AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079480 MtrunA17_Chr7g0264491 91.696 566 25 7 1 553 1 557 0.0 1013
Msa1079480 MtrunA17_Chr1g0180881 56.631 558 223 6 4 553 15 561 0.0 617
Msa1079480 MtrunA17_Chr3g0145921 36.340 388 238 3 165 548 187 569 5.12e-72 240
Msa1079480 MtrunA17_Chr3g0090001 39.496 238 144 0 312 549 165 402 2.83e-51 181
Msa1079480 MtrunA17_Chr1g0146481 30.065 306 207 2 247 551 250 549 2.68e-42 159
Msa1079480 MtrunA17_Chr4g0021031 32.119 302 197 5 252 547 200 499 1.55e-36 142
Msa1079480 MtrunA17_Chr3g0126401 30.693 303 199 5 253 549 216 513 4.27e-30 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079480 AT2G36990.1 51.476 542 232 7 19 553 30 547 8.71e-178 513
Msa1079480 AT1G08540.1 38.674 362 217 1 188 549 212 568 8.67e-80 261
Msa1079480 AT5G13730.1 35.135 296 189 1 253 548 122 414 5.59e-47 170
Msa1079480 AT3G53920.1 29.693 293 205 1 259 550 278 570 1.31e-41 158
Msa1079480 AT1G64860.1 29.032 341 227 6 222 549 161 499 3.43e-33 133
Msa1079480 AT5G24120.1 29.697 330 219 5 227 549 193 516 1.04e-32 132
Msa1079480 AT5G24120.3 29.697 330 219 5 227 549 193 516 1.04e-32 132
Msa1079480 AT5G24120.2 29.697 330 219 5 227 549 193 516 1.04e-32 132
Msa1079480 AT1G64860.2 28.378 296 198 5 222 504 161 455 2.20e-27 116
Msa1079480 AT3G53920.2 26.866 134 98 0 258 391 277 410 2.12e-17 85.1

Find 133 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAAAGTTGCTTTGTTTC+AGG 0.090588 7_2:-78685179 None:intergenic
ACCTGTTACCCTCGTGTTTA+AGG 0.141819 7_2:-78684469 None:intergenic
CTGTTCCTGCAGCTTCTTCT+TGG 0.168969 7_2:+78684239 Msa1079480:CDS
ATCAAACTTCAGTCTCATTT+TGG 0.184227 7_2:+78685353 Msa1079480:CDS
GAGAAATCTTTGTCAGAAAT+TGG 0.213726 7_2:+78688316 Msa1079480:CDS
CTGAGTACCTTCCTTTCTTT+TGG 0.217852 7_2:-78688265 None:intergenic
TCGCTTTGCTATTTCTTCTT+TGG 0.231759 7_2:-78686461 None:intergenic
AGAATTCTTCCTTCCCCTTC+AGG 0.247343 7_2:+78684044 Msa1079480:CDS
ATGCTCTGCGCTTGTTCTTA+TGG 0.275437 7_2:+78685153 Msa1079480:CDS
GGTTCAGTACTTACGCTTAC+TGG 0.283353 7_2:+78685829 Msa1079480:CDS
TACATAGTTGTATCTAATTA+AGG 0.293695 7_2:+78683971 Msa1079480:five_prime_UTR
GGAGAATTTCTATGCCCTTT+TGG 0.304880 7_2:+78686384 Msa1079480:intron
TTTGTACTTTCCGAAGAATA+AGG 0.337871 7_2:-78683935 None:intergenic
ACCTTAAACACGAGGGTAAC+AGG 0.338504 7_2:+78684468 Msa1079480:CDS
CTGCCTTCAGGACTTATTGC+AGG 0.346270 7_2:+78685535 Msa1079480:CDS
AATATCATAGGAGGGAAGTA+TGG 0.346762 7_2:+78685761 Msa1079480:intron
GGGGCGTGGTCTCTGCCTTC+AGG 0.350007 7_2:+78685523 Msa1079480:CDS
TACCGGCAGACGAATTGTTT+TGG 0.351152 7_2:-78685892 None:intergenic
GGGGAAGGAAGAATTCTAGA+AGG 0.369676 7_2:-78684038 None:intergenic
ACTGAACCGGCAACCAGCTT+GGG 0.373184 7_2:-78685814 None:intergenic
GGTGGATAAGGCAAACAATA+AGG 0.378088 7_2:+78685850 Msa1079480:CDS
CTTCCGCAATCTTGCCCAAA+AGG 0.380574 7_2:-78686399 None:intergenic
TCAAACCCCAAGCTGGTTGC+CGG 0.391074 7_2:+78685808 Msa1079480:CDS
GGAACCAACTTTGGCTGAAT+GGG 0.405490 7_2:+78685379 Msa1079480:CDS
CAAGAAGAAGCTGCAGGAAC+AGG 0.414267 7_2:-78684238 None:intergenic
CTTTGCTATTTCTTCTTTGG+TGG 0.415934 7_2:-78686458 None:intergenic
AGTGGCTGAAGAGTTGAAAT+TGG 0.417620 7_2:+78684810 Msa1079480:CDS
GCCTGCTGATGGTTTCCAAT+GGG 0.420481 7_2:+78684735 Msa1079480:CDS
TCTGATACCTCCTTATTCTT+CGG 0.428059 7_2:+78683925 Msa1079480:five_prime_UTR
AGGAATTACAGTAGATAGGT+TGG 0.431039 7_2:+78686486 Msa1079480:CDS
GGCTGAATGGGCAGATGGTG+TGG 0.432577 7_2:+78685391 Msa1079480:CDS
TACTGAACCGGCAACCAGCT+TGG 0.433442 7_2:-78685815 None:intergenic
CAAGGTGTTGGGTGTGTGTA+AGG 0.434469 7_2:+78688339 Msa1079480:CDS
GGGAACCAACTTTGGCTGAA+TGG 0.437966 7_2:+78685378 Msa1079480:CDS
GATGATGATTCACTACCTCT+TGG 0.440294 7_2:+78684853 Msa1079480:CDS
GTATGCAGCAGTTGCATCTT+CGG 0.440704 7_2:+78684550 Msa1079480:CDS
CTAAGATTTGGTATTGAAGA+TGG 0.445284 7_2:+78688289 Msa1079480:CDS
TAAGGAGAGGGTCAGACAAT+TGG 0.454557 7_2:+78688357 Msa1079480:CDS
AAGGTACTCAGGCTAAGATT+TGG 0.454745 7_2:+78688277 Msa1079480:CDS
TCAATTGATTGCTCAAATAC+AGG 0.459560 7_2:+78685217 Msa1079480:CDS
GAAGAAACGAAATCCTCTTC+CGG 0.460270 7_2:-78684694 None:intergenic
GCTTGAGCTTGTTCAACGCT+TGG 0.460500 7_2:-78688384 None:intergenic
TTTGCTATTTCTTCTTTGGT+GGG 0.461967 7_2:-78686457 None:intergenic
TTTCGATGGAGCGAGCTGTA+TGG 0.462748 7_2:+78686539 Msa1079480:CDS
AGACTCGGACACAACTTTCC+AGG 0.467003 7_2:+78686564 Msa1079480:CDS
ATTGGCTTCTTCGCCGGAAG+AGG 0.467488 7_2:+78684681 Msa1079480:CDS
TCAGAAATTGGCAAGGTGTT+GGG 0.477054 7_2:+78688328 Msa1079480:CDS
TCAACTATGCTGCCTGCTGA+TGG 0.478314 7_2:+78684724 Msa1079480:CDS
ATGATGATTCACTACCTCTT+GGG 0.478340 7_2:+78684854 Msa1079480:CDS
TTTATATAATTGCTCAACCT+TGG 0.481097 7_2:-78688474 None:intergenic
TTCCAAAACAATTCGTCTGC+CGG 0.487773 7_2:+78685890 Msa1079480:CDS
GTCAGAAATTGGCAAGGTGT+TGG 0.493182 7_2:+78688327 Msa1079480:CDS
TTCGATGGAGCGAGCTGTAT+GGG 0.496745 7_2:+78686540 Msa1079480:CDS
CTTCAGATTGGCTTCTTCGC+CGG 0.497531 7_2:+78684675 Msa1079480:intron
AGACTGGCCGACTCTTCACT+TGG 0.501392 7_2:+78684963 Msa1079480:intron
AAGAGCATCGTGATGAGTAT+AGG 0.501804 7_2:+78684308 Msa1079480:CDS
GCTGAATGGGCAGATGGTGT+GGG 0.502616 7_2:+78685392 Msa1079480:CDS
AGTAAGCGTAAGTACTGAAC+CGG 0.503207 7_2:-78685827 None:intergenic
TTCCGCAATCTTGCCCAAAA+GGG 0.503563 7_2:-78686398 None:intergenic
CTCAAAACAAGCTGCTGCAG+TGG 0.504669 7_2:+78684792 Msa1079480:CDS
GAGTAGGAATTACAGTAGAT+AGG 0.505400 7_2:+78686482 Msa1079480:CDS
CTTACGCTTACTGGTGGATA+AGG 0.505548 7_2:+78685838 Msa1079480:CDS
TCTAGAAGGGAATGGTGTAG+AGG 0.506405 7_2:-78684024 None:intergenic
TACAAGAACTCCGCTTTCGA+TGG 0.512841 7_2:+78686525 Msa1079480:CDS
TCTTGCTAAGCAAGCTCTAT+CGG 0.513578 7_2:+78684768 Msa1079480:CDS
CTAGAAGGGAATGGTGTAGA+GGG 0.515945 7_2:-78684023 None:intergenic
TGCCTGCTGATGGTTTCCAA+TGG 0.519704 7_2:+78684734 Msa1079480:CDS
ACAAAATCGTGAGGTCAATA+CGG 0.521532 7_2:+78684991 Msa1079480:CDS
CGCCAACTCATCAACATGGC+CGG 0.524927 7_2:-78684520 None:intergenic
TACCGGCCATGTTGATGAGT+TGG 0.528770 7_2:+78684518 Msa1079480:CDS
TCTGCCCATTCAGCCAAAGT+TGG 0.529812 7_2:-78685383 None:intergenic
AGGGAAGTATGGGCCTTATG+AGG 0.530509 7_2:+78685772 Msa1079480:CDS
GCGAGCTGTATGGGCAGACT+CGG 0.531907 7_2:+78686549 Msa1079480:CDS
AAGTTGAAAGAAGGACTTGA+CGG 0.532097 7_2:+78685125 Msa1079480:CDS
GAAGGGAATGGTGTAGAGGG+AGG 0.533281 7_2:-78684020 None:intergenic
TCACATTGCTAAATATTACC+AGG 0.536733 7_2:+78685502 Msa1079480:CDS
TCCCATTGGAAACCATCAGC+AGG 0.540739 7_2:-78684736 None:intergenic
GAAGGCAGAGACCACGCCCC+TGG 0.545314 7_2:-78685520 None:intergenic
ATTTGTGAGAAAATCAATAC+CGG 0.546496 7_2:+78684501 Msa1079480:CDS
CAAGAGTAAGTGCATCCCAT+TGG 0.548221 7_2:-78684750 None:intergenic
GGTCAATACGGCTTAAAGAA+AGG 0.550085 7_2:+78685003 Msa1079480:CDS
GGGAAGGAAGAATTCTAGAA+GGG 0.551200 7_2:-78684037 None:intergenic
CAAAAGAAAGGAAGGTACTC+AGG 0.556105 7_2:+78688266 Msa1079480:CDS
GTAGGCCAAGAAGAAGCTGC+AGG 0.556382 7_2:-78684244 None:intergenic
GTTCTTTCCAAGTGAAGAGT+CGG 0.560295 7_2:-78684970 None:intergenic
AAGAATAAGGAGGTATCAGA+TGG 0.560374 7_2:-78683922 None:intergenic
TGAGGTTGAGCGTTGAAGTG+TGG 0.561105 7_2:+78683861 Msa1079480:five_prime_UTR
AGGAATAAGGGTACCTGAAG+GGG 0.561538 7_2:-78684057 None:intergenic
ATATCATAGGAGGGAAGTAT+GGG 0.564621 7_2:+78685762 Msa1079480:intron
AAAAGTCTGATGTACAAAGA+AGG 0.564894 7_2:+78685087 Msa1079480:CDS
TTTGCCTCCAAAAGAAAGGA+AGG 0.566764 7_2:+78688258 Msa1079480:CDS
GATTCATGCCAACTTACGCC+TGG 0.569755 7_2:+78685475 Msa1079480:CDS
CACAATGAAGTCGTTTCTGA+AGG 0.570570 7_2:-78685430 None:intergenic
GCAGGAACAGGTTGGTCATG+AGG 0.571003 7_2:-78684226 None:intergenic
GAAAAGTTCAAACCCCAAGC+TGG 0.571259 7_2:+78685801 Msa1079480:CDS
GCTAAATATTACCAGGGGCG+TGG 0.578026 7_2:+78685509 Msa1079480:CDS
GAAGAAATAGCAAAGCGAGT+AGG 0.578606 7_2:+78686466 Msa1079480:CDS
AGCCATGTACGCAACCTCCT+AGG 0.580915 7_2:+78688232 Msa1079480:CDS
TTGCTATTTCTTCTTTGGTG+GGG 0.584906 7_2:-78686456 None:intergenic
GTTGGGTGTGTGTAAGGAGA+GGG 0.590883 7_2:+78688345 Msa1079480:CDS
CACATTGCTAAATATTACCA+GGG 0.594851 7_2:+78685503 Msa1079480:CDS
CATCAAGTTGTTGACTAACA+AGG 0.596849 7_2:-78688411 None:intergenic
TAGGAATAAGGGTACCTGAA+GGG 0.599072 7_2:-78684058 None:intergenic
ATCTTTGTCAGAAATTGGCA+AGG 0.600345 7_2:+78688321 Msa1079480:CDS
GGAAGAATTCTAGAAGGGAA+TGG 0.601143 7_2:-78684032 None:intergenic
TCTTGTAAAAGAACGGAGGT+AGG 0.606736 7_2:-78684289 None:intergenic
TCTGAAGGTCACGACAGCTA+AGG 0.610151 7_2:-78685415 None:intergenic
ACGATGCTCTTGTAAAAGAA+CGG 0.614648 7_2:-78684296 None:intergenic
GTGTTGCAAAACAACTAATG+AGG 0.615119 7_2:+78688209 Msa1079480:CDS
AAGAAGCTGCAGGAACAGGT+TGG 0.620481 7_2:-78684234 None:intergenic
GTACTTTCCGAAGAATAAGG+AGG 0.622553 7_2:-78683932 None:intergenic
CTGAACCGGCAACCAGCTTG+GGG 0.623406 7_2:-78685813 None:intergenic
ATACCTGCAATAAGTCCTGA+AGG 0.625468 7_2:-78685538 None:intergenic
ACAGCTCGCTCCATCGAAAG+CGG 0.630654 7_2:-78686535 None:intergenic
TCTTTACACATATGAAGTAG+CGG 0.632505 7_2:-78684331 None:intergenic
ATAAGGGTACCTGAAGGGGA+AGG 0.633867 7_2:-78684053 None:intergenic
ATTTAGCAATGTGAACTACC+AGG 0.636377 7_2:-78685493 None:intergenic
CTTCAGAAACGACTTCATTG+TGG 0.636469 7_2:+78685431 Msa1079480:CDS
TAAAGAAGACAAATCACCCC+AGG 0.636708 7_2:+78684348 Msa1079480:CDS
TCAGTACTTACGCTTACTGG+TGG 0.637515 7_2:+78685832 Msa1079480:CDS
TGTTGGGTGTGTGTAAGGAG+AGG 0.638170 7_2:+78688344 Msa1079480:CDS
TTGGAGGCAAAATACCTAGG+AGG 0.638755 7_2:-78688246 None:intergenic
GGATAAGGCAAACAATAAGG+AGG 0.639166 7_2:+78685853 Msa1079480:CDS
ACTTTGGCTGAATGGGCAGA+TGG 0.654006 7_2:+78685386 Msa1079480:CDS
AAAGCTAGAACTAACCCAAG+AGG 0.661385 7_2:-78684868 None:intergenic
GATAAGGCAAACAATAAGGA+GGG 0.667443 7_2:+78685854 Msa1079480:CDS
TTGGAAAGAACAAAATCGTG+AGG 0.689756 7_2:+78684982 Msa1079480:CDS
ACATTGCTAAATATTACCAG+GGG 0.701498 7_2:+78685504 Msa1079480:CDS
TGAAGGCAACCTTAAACACG+AGG 0.708109 7_2:+78684460 Msa1079480:intron
TATGCGCCAACTCATCAACA+TGG 0.709920 7_2:-78684524 None:intergenic
ATGCTCTTGTAAAAGAACGG+AGG 0.736774 7_2:-78684293 None:intergenic
TTGATCAATAGCATACACCA+AGG 0.737692 7_2:+78688457 Msa1079480:three_prime_UTR
GAAGGCAACCTTAAACACGA+GGG 0.769287 7_2:+78684461 Msa1079480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATGTATTAAATAAAATA+AGG - chr7_2:78687923-78687942 None:intergenic 10.0%
!!! TATTTTAGATTTTTTTTTTG+AGG + chr7_2:78688518-78688537 Msa1079480:three_prime_UTR 10.0%
!!! ATTTTAGATTTTTTTTTTGA+GGG + chr7_2:78688519-78688538 Msa1079480:three_prime_UTR 10.0%
!! ATCTATTAAAGAAACAAATT+TGG - chr7_2:78684640-78684659 None:intergenic 15.0%
!! ACATACTTAAATATATGATT+TGG - chr7_2:78687116-78687135 None:intergenic 15.0%
!! CTATACAATGTATATATATA+TGG - chr7_2:78687150-78687169 None:intergenic 15.0%
!! CATATATATATACATTGTAT+AGG + chr7_2:78687148-78687167 Msa1079480:intron 15.0%
!! AATATGAATAGATAGAATAA+TGG + chr7_2:78687702-78687721 Msa1079480:intron 15.0%
!! TACATAGTTGTATCTAATTA+AGG + chr7_2:78683971-78683990 Msa1079480:five_prime_UTR 20.0%
!! AACAAAAGAAATAGGAATAA+GGG - chr7_2:78684072-78684091 None:intergenic 20.0%
!! TAACAAAAGAAATAGGAATA+AGG - chr7_2:78684073-78684092 None:intergenic 20.0%
!! TTACTGATAACAAAAGAAAT+AGG - chr7_2:78684080-78684099 None:intergenic 20.0%
!!! CTACTATTTTATTTTACTGA+AGG + chr7_2:78684443-78684462 Msa1079480:intron 20.0%
!! CAAAACATTTCAATGAAATA+TGG - chr7_2:78685257-78685276 None:intergenic 20.0%
!!! ATTTCATTGAAATGTTTTGT+AGG + chr7_2:78685258-78685277 Msa1079480:intron 20.0%
!!! TGTAATGGTAGTTATTTTAT+TGG - chr7_2:78686283-78686302 None:intergenic 20.0%
!! AAAAAATCGTACATTAAAGA+AGG + chr7_2:78686424-78686443 Msa1079480:CDS 20.0%
!! AAAATTGATATTTACGTTGA+AGG - chr7_2:78686595-78686614 None:intergenic 20.0%
!! TGATAACTGTTTAAACATAT+TGG + chr7_2:78686771-78686790 Msa1079480:intron 20.0%
!!! ACCATTAAAAAAGAAACTTT+TGG - chr7_2:78686908-78686927 None:intergenic 20.0%
!!! ATTCTTTTGGTTTAGTATTT+TGG + chr7_2:78687079-78687098 Msa1079480:intron 20.0%
!!! TTCTTTTGGTTTAGTATTTT+GGG + chr7_2:78687080-78687099 Msa1079480:intron 20.0%
!! ACATGTAAGTAAACTATATT+AGG + chr7_2:78687936-78687955 Msa1079480:intron 20.0%
! ATTTGTCTTAATTGTTGAGA+AGG + chr7_2:78684178-78684197 Msa1079480:intron 25.0%
!!! ATTGATTTTCTCACAAATTG+AGG - chr7_2:78684499-78684518 None:intergenic 25.0%
! ATTTGTGAGAAAATCAATAC+CGG + chr7_2:78684501-78684520 Msa1079480:CDS 25.0%
! AGTAACGCATAAACAAATAA+AGG - chr7_2:78684911-78684930 None:intergenic 25.0%
! TTAGAGAAAAAGTTGAAAGA+AGG + chr7_2:78685116-78685135 Msa1079480:CDS 25.0%
!! ATGTTTTGTAGGTTCAATTA+AGG + chr7_2:78685269-78685288 Msa1079480:intron 25.0%
!! TGTTTTGTAGGTTCAATTAA+GGG + chr7_2:78685270-78685289 Msa1079480:intron 25.0%
! GAAATAATTTAAACAGCCAT+TGG - chr7_2:78685572-78685591 None:intergenic 25.0%
! AAAACCTCAAGATAAATGTT+TGG + chr7_2:78685602-78685621 Msa1079480:intron 25.0%
! TGTTGCAGTAATTATCTTAA+TGG + chr7_2:78685696-78685715 Msa1079480:intron 25.0%
!! CTTTAACATTCATTTTCTGA+TGG + chr7_2:78685737-78685756 Msa1079480:intron 25.0%
!! TTTTCTGATGGTAATATCAT+AGG + chr7_2:78685749-78685768 Msa1079480:intron 25.0%
!!! AGGTTTTATCAAACTAGTTA+AGG - chr7_2:78685936-78685955 None:intergenic 25.0%
!! ACTAGTTTGATAAAACCTTA+AGG + chr7_2:78685938-78685957 Msa1079480:intron 25.0%
! CTAGTTTGATAAAACCTTAA+GGG + chr7_2:78685939-78685958 Msa1079480:intron 25.0%
!! TATATGTTTGTTAGTTGAAG+CGG + chr7_2:78686159-78686178 Msa1079480:intron 25.0%
!! TCTTGTAGTCAATTACATTT+TGG - chr7_2:78686819-78686838 None:intergenic 25.0%
!!! GCCAAAAGTTTCTTTTTTAA+TGG + chr7_2:78686904-78686923 Msa1079480:intron 25.0%
!!! TTTCTTTTTTAATGGTGTGA+GGG + chr7_2:78686912-78686931 Msa1079480:intron 25.0%
! GCTTATCTAATATAAACAGT+TGG - chr7_2:78686955-78686974 None:intergenic 25.0%
! TGTTTATATTAGATAAGCCT+GGG + chr7_2:78686957-78686976 Msa1079480:intron 25.0%
! AACATACTACCATAAACATA+AGG + chr7_2:78686986-78687005 Msa1079480:intron 25.0%
! ACATACTACCATAAACATAA+GGG + chr7_2:78686987-78687006 Msa1079480:intron 25.0%
! TAAACTAGTTAAACAAAACC+AGG + chr7_2:78687026-78687045 Msa1079480:intron 25.0%
! TTGAAATACTGAAAAGAGAT+AGG + chr7_2:78687458-78687477 Msa1079480:intron 25.0%
!! AATAGATAGAATAATGGAGA+TGG + chr7_2:78687708-78687727 Msa1079480:intron 25.0%
! ATTATTATTGAACTTCTCTG+TGG + chr7_2:78687738-78687757 Msa1079480:intron 25.0%
!! TACAATTTTACAATTCCTCT+AGG + chr7_2:78687831-78687850 Msa1079480:intron 25.0%
!!! TATATTAGGCCTTGTTTATT+GGG + chr7_2:78687950-78687969 Msa1079480:intron 25.0%
! TAATAAGATGTTGGTCAATT+TGG - chr7_2:78688140-78688159 None:intergenic 25.0%
! CTGCAATTATAATAAGATGT+TGG - chr7_2:78688149-78688168 None:intergenic 25.0%
! CAACATCTTATTATAATTGC+AGG + chr7_2:78688147-78688166 Msa1079480:intron 25.0%
! TTTATATAATTGCTCAACCT+TGG - chr7_2:78688477-78688496 None:intergenic 25.0%
TTTGTACTTTCCGAAGAATA+AGG - chr7_2:78683938-78683957 None:intergenic 30.0%
TCTTTACACATATGAAGTAG+CGG - chr7_2:78684334-78684353 None:intergenic 30.0%
GTATATTGTCTACTTCAGAT+TGG + chr7_2:78684663-78684682 Msa1079480:intron 30.0%
!! GTACATCAGACTTTTTAGTA+AGG - chr7_2:78685082-78685101 None:intergenic 30.0%
AAAAGTCTGATGTACAAAGA+AGG + chr7_2:78685087-78685106 Msa1079480:CDS 30.0%
TCAATTGATTGCTCAAATAC+AGG + chr7_2:78685217-78685236 Msa1079480:CDS 30.0%
CTGTTGCATATAACACATTA+TGG - chr7_2:78685306-78685325 None:intergenic 30.0%
CATAATGTGTTATATGCAAC+AGG + chr7_2:78685304-78685323 Msa1079480:intron 30.0%
! ATCAAACTTCAGTCTCATTT+TGG + chr7_2:78685353-78685372 Msa1079480:CDS 30.0%
TCACATTGCTAAATATTACC+AGG + chr7_2:78685502-78685521 Msa1079480:CDS 30.0%
CACATTGCTAAATATTACCA+GGG + chr7_2:78685503-78685522 Msa1079480:CDS 30.0%
ACATTGCTAAATATTACCAG+GGG + chr7_2:78685504-78685523 Msa1079480:CDS 30.0%
TTAGCCAAACATTTATCTTG+AGG - chr7_2:78685609-78685628 None:intergenic 30.0%
GATAAATGTTTGGCTAAAGT+TGG + chr7_2:78685612-78685631 Msa1079480:intron 30.0%
!!! TGTTTTGGAATGCAGAAATA+AGG - chr7_2:78685880-78685899 None:intergenic 30.0%
!!! AATGAACAGATTGGTTTTAC+CGG - chr7_2:78685912-78685931 None:intergenic 30.0%
AGTTAAGGAAATGAACAGAT+TGG - chr7_2:78685921-78685940 None:intergenic 30.0%
AGAAAGTAAACAAACCCTTA+AGG - chr7_2:78685956-78685975 None:intergenic 30.0%
!! TGTGTTCGTTTTAAATTGCT+AGG + chr7_2:78686009-78686028 Msa1079480:intron 30.0%
!! TCGTTTTAAATTGCTAGGAA+AGG + chr7_2:78686014-78686033 Msa1079480:intron 30.0%
!! CGTTTTAAATTGCTAGGAAA+GGG + chr7_2:78686015-78686034 Msa1079480:intron 30.0%
CAATTGTGATAGAGAAAAGA+TGG + chr7_2:78686060-78686079 Msa1079480:intron 30.0%
AAGAAACGTGAGAAGTAAAT+GGG + chr7_2:78686192-78686211 Msa1079480:intron 30.0%
CTTCAAAATGAGAAAAGCTT+AGG - chr7_2:78686219-78686238 None:intergenic 30.0%
!! TCGATTCTATTTCTGTAACA+TGG + chr7_2:78686342-78686361 Msa1079480:intron 30.0%
TTCTCCTGAAAATAATATGC+TGG - chr7_2:78686370-78686389 None:intergenic 30.0%
!! TTTGCTATTTCTTCTTTGGT+GGG - chr7_2:78686460-78686479 None:intergenic 30.0%
ATACTTGTGCAAATTTGAGA+TGG - chr7_2:78686843-78686862 None:intergenic 30.0%
ACAAGTATTAAGTTCTGTTG+TGG + chr7_2:78686855-78686874 Msa1079480:intron 30.0%
!!! GTTTCTTTTTTAATGGTGTG+AGG + chr7_2:78686911-78686930 Msa1079480:intron 30.0%
CTGTTTATATTAGATAAGCC+TGG + chr7_2:78686956-78686975 Msa1079480:intron 30.0%
! GGTTTCATTCATCATTCTTT+TGG + chr7_2:78687066-78687085 Msa1079480:intron 30.0%
AAGCTTGTGAAATATGATGT+TGG + chr7_2:78687176-78687195 Msa1079480:intron 30.0%
!! TATGATGTTGGTCTTGTTTA+AGG + chr7_2:78687188-78687207 Msa1079480:intron 30.0%
! ATTTAGTCTAGTTTAACCTG+AGG - chr7_2:78687219-78687238 None:intergenic 30.0%
AAACCTACTAAATATGCATG+TGG + chr7_2:78687247-78687266 Msa1079480:intron 30.0%
! ATTTTGTTCCTTACAGAAGT+TGG + chr7_2:78687299-78687318 Msa1079480:intron 30.0%
TCAATTCTGTAATAAGAGAG+TGG + chr7_2:78687581-78687600 Msa1079480:intron 30.0%
TAAGAGAGTGGATCAAATAT+AGG + chr7_2:78687593-78687612 Msa1079480:intron 30.0%
AAGAGAGTGGATCAAATATA+GGG + chr7_2:78687594-78687613 Msa1079480:intron 30.0%
TGTTTATGTTGGATTACCTT+GGG - chr7_2:78687877-78687896 None:intergenic 30.0%
TTGTTTATGTTGGATTACCT+TGG - chr7_2:78687878-78687897 None:intergenic 30.0%
!! CTATATTAGGCCTTGTTTAT+TGG + chr7_2:78687949-78687968 Msa1079480:intron 30.0%
TTAATTTATGCCTGTATGTG+AGG - chr7_2:78688048-78688067 None:intergenic 30.0%
! CTAAGATTTGGTATTGAAGA+TGG + chr7_2:78688289-78688308 Msa1079480:CDS 30.0%
GAGAAATCTTTGTCAGAAAT+TGG + chr7_2:78688316-78688335 Msa1079480:CDS 30.0%
!! AAGAATAAGGAGGTATCAGA+TGG - chr7_2:78683925-78683944 None:intergenic 35.0%
TCTGATACCTCCTTATTCTT+CGG + chr7_2:78683925-78683944 Msa1079480:five_prime_UTR 35.0%
TACTGTGCAGAAAAACTAGT+AGG - chr7_2:78684265-78684284 None:intergenic 35.0%
ACGATGCTCTTGTAAAAGAA+CGG - chr7_2:78684299-78684318 None:intergenic 35.0%
GACAAAAATAACTGAACCTG+GGG - chr7_2:78684367-78684386 None:intergenic 35.0%
CGACAAAAATAACTGAACCT+GGG - chr7_2:78684368-78684387 None:intergenic 35.0%
ACGACAAAAATAACTGAACC+TGG - chr7_2:78684369-78684388 None:intergenic 35.0%
ATGATGATTCACTACCTCTT+GGG + chr7_2:78684854-78684873 Msa1079480:CDS 35.0%
!! TCTAGCTTTGTGGTTAACTT+TGG + chr7_2:78684882-78684901 Msa1079480:intron 35.0%
! CAGTCTGAATCGCAAATTTT+AGG - chr7_2:78684949-78684968 None:intergenic 35.0%
CTAAAATTTGCGATTCAGAC+TGG + chr7_2:78684947-78684966 Msa1079480:intron 35.0%
TTGGAAAGAACAAAATCGTG+AGG + chr7_2:78684982-78685001 Msa1079480:CDS 35.0%
ACAAAATCGTGAGGTCAATA+CGG + chr7_2:78684991-78685010 Msa1079480:CDS 35.0%
AAGTTGAAAGAAGGACTTGA+CGG + chr7_2:78685125-78685144 Msa1079480:CDS 35.0%
!! CTCAAAAGTTGCTTTGTTTC+AGG - chr7_2:78685182-78685201 None:intergenic 35.0%
! AACTTCAGTCTCATTTTGGA+AGG + chr7_2:78685357-78685376 Msa1079480:CDS 35.0%
!! ACTTCAGTCTCATTTTGGAA+GGG + chr7_2:78685358-78685377 Msa1079480:CDS 35.0%
ATTTAGCAATGTGAACTACC+AGG - chr7_2:78685496-78685515 None:intergenic 35.0%
TCTGATGGTAATATCATAGG+AGG + chr7_2:78685752-78685771 Msa1079480:intron 35.0%
CTGATGGTAATATCATAGGA+GGG + chr7_2:78685753-78685772 Msa1079480:intron 35.0%
AATATCATAGGAGGGAAGTA+TGG + chr7_2:78685761-78685780 Msa1079480:intron 35.0%
! ATATCATAGGAGGGAAGTAT+GGG + chr7_2:78685762-78685781 Msa1079480:intron 35.0%
GATAAGGCAAACAATAAGGA+GGG + chr7_2:78685854-78685873 Msa1079480:CDS 35.0%
TGTGATAGAGAAAAGATGGA+AGG + chr7_2:78686064-78686083 Msa1079480:intron 35.0%
CAAGAAACGTGAGAAGTAAA+TGG + chr7_2:78686191-78686210 Msa1079480:intron 35.0%
!!! GCTTTTCTCATTTTGAAGTG+TGG + chr7_2:78686221-78686240 Msa1079480:intron 35.0%
!!! CATTTTGAAGTGTGGATTGT+CGG + chr7_2:78686229-78686248 Msa1079480:intron 35.0%
AGGCATGGAATTGTTGTATA+TGG + chr7_2:78686253-78686272 Msa1079480:intron 35.0%
! GGTACCAGCATATTATTTTC+AGG + chr7_2:78686363-78686382 Msa1079480:intron 35.0%
! GAGAATTTCTATGCCCTTTT+GGG + chr7_2:78686385-78686404 Msa1079480:CDS 35.0%
!! TTGCTATTTCTTCTTTGGTG+GGG - chr7_2:78686459-78686478 None:intergenic 35.0%
!! CTTTGCTATTTCTTCTTTGG+TGG - chr7_2:78686461-78686480 None:intergenic 35.0%
!! TCGCTTTGCTATTTCTTCTT+TGG - chr7_2:78686464-78686483 None:intergenic 35.0%
GAGTAGGAATTACAGTAGAT+AGG + chr7_2:78686482-78686501 Msa1079480:CDS 35.0%
AGGAATTACAGTAGATAGGT+TGG + chr7_2:78686486-78686505 Msa1079480:CDS 35.0%
TAGTAAGTGATATCGTTGCA+GGG - chr7_2:78686619-78686638 None:intergenic 35.0%
ATCAGTGCAAGCAAAAAACT+CGG - chr7_2:78686755-78686774 None:intergenic 35.0%
TTAAGTTCTGTTGTGGATGA+TGG + chr7_2:78686862-78686881 Msa1079480:intron 35.0%
GCTTGATACCCTTATGTTTA+TGG - chr7_2:78686998-78687017 None:intergenic 35.0%
ACTAGTTAAACAAAACCAGG+TGG + chr7_2:78687029-78687048 Msa1079480:intron 35.0%
TTAAACAAAACCAGGTGGTT+TGG + chr7_2:78687034-78687053 Msa1079480:intron 35.0%
CAAATGATCCAACTTCTGTA+AGG - chr7_2:78687310-78687329 None:intergenic 35.0%
! ATCAAGAGGTGCATATTAAC+AGG - chr7_2:78687341-78687360 None:intergenic 35.0%
TGTTAATATGCACCTCTTGA+TGG + chr7_2:78687340-78687359 Msa1079480:intron 35.0%
!! CATTGAGTTTACTTTTGTGC+TGG - chr7_2:78687409-78687428 None:intergenic 35.0%
ATTGCAACATTAGAGAGAGT+CGG + chr7_2:78687488-78687507 Msa1079480:intron 35.0%
! TCTTGCTATGTCTAACGATT+GGG - chr7_2:78687623-78687642 None:intergenic 35.0%
GACCAAGAAAAGCTAACTAT+TGG + chr7_2:78687641-78687660 Msa1079480:intron 35.0%
!!! CTCCAATAGTTAGCTTTTCT+TGG - chr7_2:78687646-78687665 None:intergenic 35.0%
!! TACGATTCGGTTGTTTATGT+TGG - chr7_2:78687888-78687907 None:intergenic 35.0%
GACGAACATTTACTACGATT+CGG - chr7_2:78687901-78687920 None:intergenic 35.0%
AGCATGAATATATCTCTAGC+AGG - chr7_2:78687976-78687995 None:intergenic 35.0%
GAGATATATTCATGCTAGAG+CGG + chr7_2:78687980-78687999 Msa1079480:intron 35.0%
AGATATATTCATGCTAGAGC+GGG + chr7_2:78687981-78688000 Msa1079480:intron 35.0%
! GTTTTGCAACACATACAGTT+GGG - chr7_2:78688201-78688220 None:intergenic 35.0%
! TGTTTTGCAACACATACAGT+TGG - chr7_2:78688202-78688221 None:intergenic 35.0%
GTGTTGCAAAACAACTAATG+AGG + chr7_2:78688209-78688228 Msa1079480:CDS 35.0%
! GTATTTTGCCTCCAAAAGAA+AGG + chr7_2:78688254-78688273 Msa1079480:CDS 35.0%
ATCTTTGTCAGAAATTGGCA+AGG + chr7_2:78688321-78688340 Msa1079480:CDS 35.0%
! CATCAAGTTGTTGACTAACA+AGG - chr7_2:78688414-78688433 None:intergenic 35.0%
TTGATCAATAGCATACACCA+AGG + chr7_2:78688457-78688476 Msa1079480:three_prime_UTR 35.0%
GTACTTTCCGAAGAATAAGG+AGG - chr7_2:78683935-78683954 None:intergenic 40.0%
! GGAAGAATTCTAGAAGGGAA+TGG - chr7_2:78684035-78684054 None:intergenic 40.0%
! GGGAAGGAAGAATTCTAGAA+GGG - chr7_2:78684040-78684059 None:intergenic 40.0%
!! TAGGAATAAGGGTACCTGAA+GGG - chr7_2:78684061-78684080 None:intergenic 40.0%
!! ATAGGAATAAGGGTACCTGA+AGG - chr7_2:78684062-78684081 None:intergenic 40.0%
TCTTGTAAAAGAACGGAGGT+AGG - chr7_2:78684292-78684311 None:intergenic 40.0%
ATGCTCTTGTAAAAGAACGG+AGG - chr7_2:78684296-78684315 None:intergenic 40.0%
!! AAGAGCATCGTGATGAGTAT+AGG + chr7_2:78684308-78684327 Msa1079480:CDS 40.0%
TAAAGAAGACAAATCACCCC+AGG + chr7_2:78684348-78684367 Msa1079480:CDS 40.0%
GAAGAAACGAAATCCTCTTC+CGG - chr7_2:78684697-78684716 None:intergenic 40.0%
TCTTGCTAAGCAAGCTCTAT+CGG + chr7_2:78684768-78684787 Msa1079480:CDS 40.0%
AGTGGCTGAAGAGTTGAAAT+TGG + chr7_2:78684810-78684829 Msa1079480:CDS 40.0%
GATGATGATTCACTACCTCT+TGG + chr7_2:78684853-78684872 Msa1079480:CDS 40.0%
AAAGCTAGAACTAACCCAAG+AGG - chr7_2:78684871-78684890 None:intergenic 40.0%
!! TTGGGTTAGTTCTAGCTTTG+TGG + chr7_2:78684872-78684891 Msa1079480:intron 40.0%
GTTCTTTCCAAGTGAAGAGT+CGG - chr7_2:78684973-78684992 None:intergenic 40.0%
GGTCAATACGGCTTAAAGAA+AGG + chr7_2:78685003-78685022 Msa1079480:CDS 40.0%
!! TTTTGGAAGGGAACCAACTT+TGG + chr7_2:78685370-78685389 Msa1079480:CDS 40.0%
CACAATGAAGTCGTTTCTGA+AGG - chr7_2:78685433-78685452 None:intergenic 40.0%
CTTCAGAAACGACTTCATTG+TGG + chr7_2:78685431-78685450 Msa1079480:CDS 40.0%
ATACCTGCAATAAGTCCTGA+AGG - chr7_2:78685541-78685560 None:intergenic 40.0%
AAAGTTGGAACTGCAGTTGT+AGG + chr7_2:78685627-78685646 Msa1079480:intron 40.0%
! ACTTTTCGACACTCCTCATA+AGG - chr7_2:78685788-78685807 None:intergenic 40.0%
!! AGTAAGCGTAAGTACTGAAC+CGG - chr7_2:78685830-78685849 None:intergenic 40.0%
GGTGGATAAGGCAAACAATA+AGG + chr7_2:78685850-78685869 Msa1079480:CDS 40.0%
GGATAAGGCAAACAATAAGG+AGG + chr7_2:78685853-78685872 Msa1079480:CDS 40.0%
TTCCAAAACAATTCGTCTGC+CGG + chr7_2:78685890-78685909 Msa1079480:CDS 40.0%
! GGAGAATTTCTATGCCCTTT+TGG + chr7_2:78686384-78686403 Msa1079480:intron 40.0%
GAAGAAATAGCAAAGCGAGT+AGG + chr7_2:78686466-78686485 Msa1079480:CDS 40.0%
CTAGTAAGTGATATCGTTGC+AGG - chr7_2:78686620-78686639 None:intergenic 40.0%
! TTCAACTCCCCATTTTGTAC+TGG + chr7_2:78686710-78686729 Msa1079480:intron 40.0%
CAAATCAAAACCAAACCACC+TGG - chr7_2:78687047-78687066 None:intergenic 40.0%
!!! CAGGTGGTTTGGTTTTGATT+TGG + chr7_2:78687045-78687064 Msa1079480:intron 40.0%
! CTTGTTTAAGGTTGATCCTC+AGG + chr7_2:78687200-78687219 Msa1079480:intron 40.0%
CTGCCACATGCATATTTAGT+AGG - chr7_2:78687253-78687272 None:intergenic 40.0%
AATATGCATGTGGCAGTGAT+TGG + chr7_2:78687257-78687276 Msa1079480:intron 40.0%
AAAACAGGCATACCATCAAG+AGG - chr7_2:78687355-78687374 None:intergenic 40.0%
!!! ATGCCTGTTTTTGCAAGTGA+CGG + chr7_2:78687364-78687383 Msa1079480:intron 40.0%
TTGCAACATTAGAGAGAGTC+GGG + chr7_2:78687489-78687508 Msa1079480:intron 40.0%
AGATGCTTGAATCTCGACTT+AGG + chr7_2:78687531-78687550 Msa1079480:intron 40.0%
AATCTCGACTTAGGTGGTTT+GGG + chr7_2:78687540-78687559 Msa1079480:intron 40.0%
! GTCTTGCTATGTCTAACGAT+TGG - chr7_2:78687624-78687643 None:intergenic 40.0%
AACAGAGTGGTTACACAACA+GGG + chr7_2:78687771-78687790 Msa1079480:intron 40.0%
!! TGTATGATGGGTGTATGACA+CGG + chr7_2:78688004-78688023 Msa1079480:intron 40.0%
TTTATGCCTGTATGTGAGGT+CGG - chr7_2:78688044-78688063 None:intergenic 40.0%
!! CTTTTGGAGGCAAAATACCT+AGG - chr7_2:78688252-78688271 None:intergenic 40.0%
TTTGCCTCCAAAAGAAAGGA+AGG + chr7_2:78688258-78688277 Msa1079480:CDS 40.0%
! AGTACCTTCCTTTCTTTTGG+AGG - chr7_2:78688265-78688284 None:intergenic 40.0%
! CTGAGTACCTTCCTTTCTTT+TGG - chr7_2:78688268-78688287 None:intergenic 40.0%
!! CAAAAGAAAGGAAGGTACTC+AGG + chr7_2:78688266-78688285 Msa1079480:CDS 40.0%
! AAGGTACTCAGGCTAAGATT+TGG + chr7_2:78688277-78688296 Msa1079480:CDS 40.0%
! TCAGAAATTGGCAAGGTGTT+GGG + chr7_2:78688328-78688347 Msa1079480:CDS 40.0%
CTAGAAGGGAATGGTGTAGA+GGG - chr7_2:78684026-78684045 None:intergenic 45.0%
TCTAGAAGGGAATGGTGTAG+AGG - chr7_2:78684027-78684046 None:intergenic 45.0%
GGGGAAGGAAGAATTCTAGA+AGG - chr7_2:78684041-78684060 None:intergenic 45.0%
AGAATTCTTCCTTCCCCTTC+AGG + chr7_2:78684044-78684063 Msa1079480:CDS 45.0%
!! AGGAATAAGGGTACCTGAAG+GGG - chr7_2:78684060-78684079 None:intergenic 45.0%
TGAAGGCAACCTTAAACACG+AGG + chr7_2:78684460-78684479 Msa1079480:intron 45.0%
GAAGGCAACCTTAAACACGA+GGG + chr7_2:78684461-78684480 Msa1079480:intron 45.0%
ACCTTAAACACGAGGGTAAC+AGG + chr7_2:78684468-78684487 Msa1079480:CDS 45.0%
ACCTGTTACCCTCGTGTTTA+AGG - chr7_2:78684472-78684491 None:intergenic 45.0%
TATGCGCCAACTCATCAACA+TGG - chr7_2:78684527-78684546 None:intergenic 45.0%
GTATGCAGCAGTTGCATCTT+CGG + chr7_2:78684550-78684569 Msa1079480:CDS 45.0%
CAAGAGTAAGTGCATCCCAT+TGG - chr7_2:78684753-78684772 None:intergenic 45.0%
ATGCTCTGCGCTTGTTCTTA+TGG + chr7_2:78685153-78685172 Msa1079480:CDS 45.0%
GGAACCAACTTTGGCTGAAT+GGG + chr7_2:78685379-78685398 Msa1079480:CDS 45.0%
GAAAAGTTCAAACCCCAAGC+TGG + chr7_2:78685801-78685820 Msa1079480:CDS 45.0%
GGTTCAGTACTTACGCTTAC+TGG + chr7_2:78685829-78685848 Msa1079480:CDS 45.0%
TCAGTACTTACGCTTACTGG+TGG + chr7_2:78685832-78685851 Msa1079480:CDS 45.0%
! CTTACGCTTACTGGTGGATA+AGG + chr7_2:78685838-78685857 Msa1079480:CDS 45.0%
! TACCGGCAGACGAATTGTTT+TGG - chr7_2:78685895-78685914 None:intergenic 45.0%
! TTGAAGTGTGGATTGTCGGT+AGG + chr7_2:78686233-78686252 Msa1079480:intron 45.0%
TTCCGCAATCTTGCCCAAAA+GGG - chr7_2:78686401-78686420 None:intergenic 45.0%
TACAAGAACTCCGCTTTCGA+TGG + chr7_2:78686525-78686544 Msa1079480:CDS 45.0%
CCACTCACCAGTACAAAATG+GGG - chr7_2:78686720-78686739 None:intergenic 45.0%
GCCACTCACCAGTACAAAAT+GGG - chr7_2:78686721-78686740 None:intergenic 45.0%
GGTAGTATGTTATGCTTCCC+AGG - chr7_2:78686977-78686996 None:intergenic 45.0%
ACTCCGTCACTTGCAAAAAC+AGG - chr7_2:78687370-78687389 None:intergenic 45.0%
!! TTTTGCAAGTGACGGAGTGT+TGG + chr7_2:78687372-78687391 Msa1079480:intron 45.0%
! TTTGCAAGTGACGGAGTGTT+GGG + chr7_2:78687373-78687392 Msa1079480:intron 45.0%
TGCAACATTAGAGAGAGTCG+GGG + chr7_2:78687490-78687509 Msa1079480:intron 45.0%
TGCTTGAATCTCGACTTAGG+TGG + chr7_2:78687534-78687553 Msa1079480:intron 45.0%
GAATCTCGACTTAGGTGGTT+TGG + chr7_2:78687539-78687558 Msa1079480:intron 45.0%
TGGATAACTGTCCAACAGAG+TGG + chr7_2:78687758-78687777 Msa1079480:intron 45.0%
CTGTTGTGTAACCACTCTGT+TGG - chr7_2:78687772-78687791 None:intergenic 45.0%
CAACAGAGTGGTTACACAAC+AGG + chr7_2:78687770-78687789 Msa1079480:intron 45.0%
ACAGAGTGGTTACACAACAG+GGG + chr7_2:78687772-78687791 Msa1079480:intron 45.0%
CTAGGCTCTCTAATTCCTAG+AGG - chr7_2:78687849-78687868 None:intergenic 45.0%
TCTAGCAGGCCCAATAAACA+AGG - chr7_2:78687962-78687981 None:intergenic 45.0%
TTGGAGGCAAAATACCTAGG+AGG - chr7_2:78688249-78688268 None:intergenic 45.0%
GTCAGAAATTGGCAAGGTGT+TGG + chr7_2:78688327-78688346 Msa1079480:CDS 45.0%
TAAGGAGAGGGTCAGACAAT+TGG + chr7_2:78688357-78688376 Msa1079480:CDS 45.0%
!!! AAAATGTTTTTTTTTTTAAA+AGG - chr7_2:78683896-78683915 None:intergenic 5.0%
!! ATTAAAAAAAATTAATGTAA+TGG - chr7_2:78686298-78686317 None:intergenic 5.0%
!! TGAGGTTGAGCGTTGAAGTG+TGG + chr7_2:78683861-78683880 Msa1079480:five_prime_UTR 50.0%
!! ATAAGGGTACCTGAAGGGGA+AGG - chr7_2:78684056-78684075 None:intergenic 50.0%
AAGAAGCTGCAGGAACAGGT+TGG - chr7_2:78684237-78684256 None:intergenic 50.0%
CAAGAAGAAGCTGCAGGAAC+AGG - chr7_2:78684241-78684260 None:intergenic 50.0%
CTGTTCCTGCAGCTTCTTCT+TGG + chr7_2:78684239-78684258 Msa1079480:CDS 50.0%
! TACCGGCCATGTTGATGAGT+TGG + chr7_2:78684518-78684537 Msa1079480:CDS 50.0%
!! CTTCAGATTGGCTTCTTCGC+CGG + chr7_2:78684675-78684694 Msa1079480:intron 50.0%
TCAACTATGCTGCCTGCTGA+TGG + chr7_2:78684724-78684743 Msa1079480:CDS 50.0%
TGCCTGCTGATGGTTTCCAA+TGG + chr7_2:78684734-78684753 Msa1079480:CDS 50.0%
GCCTGCTGATGGTTTCCAAT+GGG + chr7_2:78684735-78684754 Msa1079480:CDS 50.0%
TCCCATTGGAAACCATCAGC+AGG - chr7_2:78684739-78684758 None:intergenic 50.0%
!!! CACTGCAGCAGCTTGTTTTG+AGG - chr7_2:78684794-78684813 None:intergenic 50.0%
CTCAAAACAAGCTGCTGCAG+TGG + chr7_2:78684792-78684811 Msa1079480:CDS 50.0%
GGGAACCAACTTTGGCTGAA+TGG + chr7_2:78685378-78685397 Msa1079480:CDS 50.0%
TCTGCCCATTCAGCCAAAGT+TGG - chr7_2:78685386-78685405 None:intergenic 50.0%
ACTTTGGCTGAATGGGCAGA+TGG + chr7_2:78685386-78685405 Msa1079480:CDS 50.0%
TCTGAAGGTCACGACAGCTA+AGG - chr7_2:78685418-78685437 None:intergenic 50.0%
GATTCATGCCAACTTACGCC+TGG + chr7_2:78685475-78685494 Msa1079480:CDS 50.0%
GTGAACTACCAGGCGTAAGT+TGG - chr7_2:78685486-78685505 None:intergenic 50.0%
GCTAAATATTACCAGGGGCG+TGG + chr7_2:78685509-78685528 Msa1079480:CDS 50.0%
CTGCCTTCAGGACTTATTGC+AGG + chr7_2:78685535-78685554 Msa1079480:CDS 50.0%
! GCAGGTATCGTCACTACCAA+TGG + chr7_2:78685553-78685572 Msa1079480:intron 50.0%
! AGGGAAGTATGGGCCTTATG+AGG + chr7_2:78685772-78685791 Msa1079480:CDS 50.0%
! TGCCCTTTTGGGCAAGATTG+CGG + chr7_2:78686396-78686415 Msa1079480:CDS 50.0%
CTTCCGCAATCTTGCCCAAA+AGG - chr7_2:78686402-78686421 None:intergenic 50.0%
TTTCGATGGAGCGAGCTGTA+TGG + chr7_2:78686539-78686558 Msa1079480:CDS 50.0%
TTCGATGGAGCGAGCTGTAT+GGG + chr7_2:78686540-78686559 Msa1079480:CDS 50.0%
AGACTCGGACACAACTTTCC+AGG + chr7_2:78686564-78686583 Msa1079480:CDS 50.0%
TCGGACACAACTTTCCAGGT+AGG + chr7_2:78686568-78686587 Msa1079480:intron 50.0%
CGGACACAACTTTCCAGGTA+GGG + chr7_2:78686569-78686588 Msa1079480:intron 50.0%
TTTACGTTGAAGGCCCTACC+TGG - chr7_2:78686585-78686604 None:intergenic 50.0%
!! CCCCATTTTGTACTGGTGAG+TGG + chr7_2:78686717-78686736 Msa1079480:intron 50.0%
CGCCACTCACCAGTACAAAA+TGG - chr7_2:78686722-78686741 None:intergenic 50.0%
GGATTACCTTGGGAGAGACT+AGG - chr7_2:78687867-78687886 None:intergenic 50.0%
ATGCTAGAGCGGGTGTATGA+TGG + chr7_2:78687991-78688010 Msa1079480:intron 50.0%
TGCTAGAGCGGGTGTATGAT+GGG + chr7_2:78687992-78688011 Msa1079480:intron 50.0%
CTGTAACCGACCTCACATAC+AGG + chr7_2:78688035-78688054 Msa1079480:intron 50.0%
TACCTAGGAGGTTGCGTACA+TGG - chr7_2:78688237-78688256 None:intergenic 50.0%
!! CAAGGTGTTGGGTGTGTGTA+AGG + chr7_2:78688339-78688358 Msa1079480:CDS 50.0%
TGTTGGGTGTGTGTAAGGAG+AGG + chr7_2:78688344-78688363 Msa1079480:CDS 50.0%
GTTGGGTGTGTGTAAGGAGA+GGG + chr7_2:78688345-78688364 Msa1079480:CDS 50.0%
! GCTTGAGCTTGTTCAACGCT+TGG - chr7_2:78688387-78688406 None:intergenic 50.0%
GAAGGGAATGGTGTAGAGGG+AGG - chr7_2:78684023-78684042 None:intergenic 55.0%
!! GCAGGAACAGGTTGGTCATG+AGG - chr7_2:78684229-78684248 None:intergenic 55.0%
GTAGGCCAAGAAGAAGCTGC+AGG - chr7_2:78684247-78684266 None:intergenic 55.0%
CGCCAACTCATCAACATGGC+CGG - chr7_2:78684523-78684542 None:intergenic 55.0%
! ATTGGCTTCTTCGCCGGAAG+AGG + chr7_2:78684681-78684700 Msa1079480:CDS 55.0%
! AGACTGGCCGACTCTTCACT+TGG + chr7_2:78684963-78684982 Msa1079480:intron 55.0%
GCTGAATGGGCAGATGGTGT+GGG + chr7_2:78685392-78685411 Msa1079480:CDS 55.0%
TCAAACCCCAAGCTGGTTGC+CGG + chr7_2:78685808-78685827 Msa1079480:CDS 55.0%
ACTGAACCGGCAACCAGCTT+GGG - chr7_2:78685817-78685836 None:intergenic 55.0%
TACTGAACCGGCAACCAGCT+TGG - chr7_2:78685818-78685837 None:intergenic 55.0%
! GTGTGGATTGTCGGTAGGCA+TGG + chr7_2:78686238-78686257 Msa1079480:intron 55.0%
ACAGCTCGCTCCATCGAAAG+CGG - chr7_2:78686538-78686557 None:intergenic 55.0%
AGAGAGCCTAGTCTCTCCCA+AGG + chr7_2:78687858-78687877 Msa1079480:intron 55.0%
AGCCATGTACGCAACCTCCT+AGG + chr7_2:78688232-78688251 Msa1079480:CDS 55.0%
GGCTGAATGGGCAGATGGTG+TGG + chr7_2:78685391-78685410 Msa1079480:CDS 60.0%
CTGAACCGGCAACCAGCTTG+GGG - chr7_2:78685816-78685835 None:intergenic 60.0%
GCGAGCTGTATGGGCAGACT+CGG + chr7_2:78686549-78686568 Msa1079480:CDS 60.0%
GAAGGCAGAGACCACGCCCC+TGG - chr7_2:78685523-78685542 None:intergenic 70.0%
GGGGCGTGGTCTCTGCCTTC+AGG + chr7_2:78685523-78685542 Msa1079480:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78683854 78688573 78683854 ID=Msa1079480;Name=Msa1079480
chr7_2 mRNA 78683854 78688573 78683854 ID=Msa1079480-mRNA-1;Parent=Msa1079480;Name=Msa1079480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=157|1|1|1|1|1|9|117|553
chr7_2 exon 78683854 78684065 78683854 ID=Msa1079480-mRNA-1:exon:19561;Parent=Msa1079480-mRNA-1
chr7_2 exon 78684218 78684369 78684218 ID=Msa1079480-mRNA-1:exon:19562;Parent=Msa1079480-mRNA-1
chr7_2 exon 78684465 78684589 78684465 ID=Msa1079480-mRNA-1:exon:19563;Parent=Msa1079480-mRNA-1
chr7_2 exon 78684681 78684875 78684681 ID=Msa1079480-mRNA-1:exon:19564;Parent=Msa1079480-mRNA-1
chr7_2 exon 78684965 78685238 78684965 ID=Msa1079480-mRNA-1:exon:19565;Parent=Msa1079480-mRNA-1
chr7_2 exon 78685326 78685556 78685326 ID=Msa1079480-mRNA-1:exon:19566;Parent=Msa1079480-mRNA-1
chr7_2 exon 78685771 78685911 78685771 ID=Msa1079480-mRNA-1:exon:19567;Parent=Msa1079480-mRNA-1
chr7_2 exon 78686385 78686585 78686385 ID=Msa1079480-mRNA-1:exon:19568;Parent=Msa1079480-mRNA-1
chr7_2 exon 78688169 78688573 78688169 ID=Msa1079480-mRNA-1:exon:19569;Parent=Msa1079480-mRNA-1
chr7_2 five_prime_UTR 78683854 78684010 78683854 ID=Msa1079480-mRNA-1:five_prime_utr;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78684011 78684065 78684011 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78684218 78684369 78684218 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78684465 78684589 78684465 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78684681 78684875 78684681 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78684965 78685238 78684965 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78685326 78685556 78685326 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78685771 78685911 78685771 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78686385 78686585 78686385 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 CDS 78688169 78688456 78688169 ID=Msa1079480-mRNA-1:cds;Parent=Msa1079480-mRNA-1
chr7_2 three_prime_UTR 78688457 78688573 78688457 ID=Msa1079480-mRNA-1:three_prime_utr;Parent=Msa1079480-mRNA-1
Gene Sequence

>Msa1079480

ATGTTTTCTCCTCCCTCTACACCATTCCCTTCTAGAATTCTTCCTTCCCCTTCAGTTATGATGCCTCATGACCAACCTGTTCCTGCAGCTTCTTCTTGGCCTACTAGTTTTTCTGCACAGTATTTTCCTACCTCCGTTCTTTTACAAGAGCATCGTGATGAGTATAGGCCGCTACTTCATATGTGTAAAGAAGACAAATCACCCCAGGCAACCTTAAACACGAGGGTAACAGGTGTGACCTCAATTTGTGAGAAAATCAATACCGGCCATGTTGATGAGTTGGCGCATAACTGTATGCAGCAGTTGCATCTTCGGTGTCATTTACAAAACTTATTGGCTTCTTCGCCGGAAGAGGATTTCGTTTCTTCTTCTTCTTCAACTATGCTGCCTGCTGATGGTTTCCAATGGGATGCACTTACTCTTGCTAAGCAAGCTCTATCGGCCTCAAAACAAGCTGCTGCAGTGGCTGAAGAGTTGAAATTGGTTAAAATTGACGATGATAATGATGATGATTCACTACCTCTTGGACTGGCCGACTCTTCACTTGGAAAGAACAAAATCGTGAGGTCAATACGGCTTAAAGAAAGGCGATCTAAACAGAGAAAAGTGTCTAACTCAAAAGTTCTTGATGACGAAATGTACCTTACTAAAAAGTCTGATGTACAAAGAAGGTTACATTTAGAGAAAAAGTTGAAAGAAGGACTTGACGGAAATGATGCTCTGCGCTTGTTCTTATGGAGTCCTGAAACAAAGCAACTTTTGAGCATTGAAGAAGAATCTCAATTGATTGCTCAAATACAGGATTTATTTAAATTGAAAGAAACAAAGATCAAACTTCAGTCTCATTTTGGAAGGGAACCAACTTTGGCTGAATGGGCAGATGGTGTGGGCCTTAGCTGTCGTGACCTTCAGAAACGACTTCATTGTGGTAACAGAAGCAAAGATAAACTGATTCATGCCAACTTACGCCTGGTAGTTCACATTGCTAAATATTACCAGGGGCGTGGTCTCTGCCTTCAGGACTTATTGCAGGAGGGAAGTATGGGCCTTATGAGGAGTGTCGAAAAGTTCAAACCCCAAGCTGGTTGCCGGTTCAGTACTTACGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTGCATTCCAAAACAATTCGTCTGCCGGAGAATTTCTATGCCCTTTTGGGCAAGATTGCGGAAGCAAAAAAATCGTACATTAAAGAAGGAAATCTTCACCCCACCAAAGAAGAAATAGCAAAGCGAGTAGGAATTACAGTAGATAGGTTGGAAATGTTGCTATTTTCTACAAGAACTCCGCTTTCGATGGAGCGAGCTGTATGGGCAGACTCGGACACAACTTTCCAGGAGATTACTGCAGACTCTGCAATTGAGATCCCAACTGTATGTGTTGCAAAACAACTAATGAGGAGCCATGTACGCAACCTCCTAGGTATTTTGCCTCCAAAAGAAAGGAAGGTACTCAGGCTAAGATTTGGTATTGAAGATGGCTATGAGAAATCTTTGTCAGAAATTGGCAAGGTGTTGGGTGTGTGTAAGGAGAGGGTCAGACAATTGGAGAGCCAAGCGTTGAACAAGCTCAAGCAGTGCCTTGTTAGTCAACAACTTGATGCATATGTTGACTTGATTGTATAG

Protein sequence

>Msa1079480

MFSPPSTPFPSRILPSPSVMMPHDQPVPAASSWPTSFSAQYFPTSVLLQEHRDEYRPLLHMCKEDKSPQATLNTRVTGVTSICEKINTGHVDELAHNCMQQLHLRCHLQNLLASSPEEDFVSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAEELKLVKIDDDNDDDSLPLGLADSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSDVQRRLHLEKKLKEGLDGNDALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLCLQDLLQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSAIEIPTVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLSEIGKVLGVCKERVRQLESQALNKLKQCLVSQQLDAYVDLIV*