AlfalfaGEDB | Msa1404670

M. sativa cultivar zhongmu-4 / Msa1404670

KEGG: -
GO: -
PFAM: PF12937.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404670	XP_003602304.1	98.765	162	2	0	1	162	1	162	5.61e-115	332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404670	G7J857	98.765	162	2	0	1	162	1	162	2.68e-115	332

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011720	Msa1404670	0.805882	1.076936e-49	-8.615850e-47
Msa0039330	Msa1404670	0.805078	1.588239e-49	-8.615850e-47
Msa0043730	Msa1404670	0.803896	2.800468e-49	-8.615850e-47
Msa0048000	Msa1404670	0.810210	1.290948e-50	-8.615850e-47
Msa0050730	Msa1404670	0.805317	1.415365e-49	-8.615850e-47
Msa0050760	Msa1404670	0.814341	1.618581e-51	-8.615850e-47
Msa0092990	Msa1404670	0.811110	8.245767e-51	-8.615850e-47
Msa0102750	Msa1404670	0.838016	3.693108e-57	-8.615850e-47
Msa0105700	Msa1404670	0.805603	1.232587e-49	-8.615850e-47
Msa0115810	Msa1404670	0.810259	1.260167e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1404670	MtrunA17_Chr3g0127331	98.765	162	2	0	1	162	1	162	5.16e-119	332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 39 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTAGCAACAGTTTCCT+TGG	0.390750	tig0023079:-36942	None:intergenic
AATATATAATTTAATTATCA+AGG	0.424029	tig0023079:-39188	None:intergenic
ACTTTCACTATTGGGTTGAA+TGG	0.462372	tig0023079:-38997	None:intergenic
AGTTCAGAAACAGACTTCAC+TGG	0.488792	tig0023079:+38850	Msa1404670:CDS
ATCATGGAAAGAAGTGTATG+AGG	0.545115	tig0023079:+38256	Msa1404670:CDS
ATCTTCATACAGATTTCCAA+AGG	0.614774	tig0023079:-37054	None:intergenic
ATTGGGTTGAATGGTAGAGA+TGG	0.590103	tig0023079:-38988	None:intergenic
CAAAATGGAAACCTTACCTT+TGG	0.392712	tig0023079:+37038	Msa1404670:exon
CAAAGGTAAGGTTTCCATTT+TGG	0.114718	tig0023079:-37037	None:intergenic
CAAGATCGATGCGATCGAGT+TGG	0.561970	tig0023079:+38281	Msa1404670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATAATCTAATCCCCAAAA+TGG	+	tig0023079:37023-37042	Msa1404670:exon	30.0%
ATCTTCATACAGATTTCCAA+AGG	-	tig0023079:37057-37076	None:intergenic	30.0%
TCTTTATCAGAAAACAGTGT+TGG	+	tig0023079:37402-37421	Msa1404670:intron	30.0%
AAATATGAATCAAGTCCATG+TGG	-	tig0023079:37692-37711	None:intergenic	30.0%
TTTCTGCACACTTATAACAT+TGG	+	tig0023079:38533-38552	Msa1404670:intron	30.0%
TTATTGAACTCTGACACAAA+GGG	+	tig0023079:38686-38705	Msa1404670:intron	30.0%
GATCACATAAGTAGTGTTTA+TGG	+	tig0023079:39250-39269	Msa1404670:three_prime_UTR	30.0%
CTATAATCTAATCCCCAAAA+TGG	+	tig0023079:37023-37042	Msa1404670:exon	30.0%
ATCTTCATACAGATTTCCAA+AGG	-	tig0023079:37057-37076	None:intergenic	30.0%
TCTTTATCAGAAAACAGTGT+TGG	+	tig0023079:37402-37421	Msa1404670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023079	gene	36860	39270	36860	ID=Msa1404670;Name=Msa1404670
tig0023079	mRNA	36860	39270	36860	ID=Msa1404670-mRNA-1;Parent=Msa1404670;Name=Msa1404670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=182\|1\|1\|1\|1\|1\|3\|283\|162
tig0023079	exon	36860	37120	36860	ID=Msa1404670-mRNA-1:exon:23721;Parent=Msa1404670-mRNA-1
tig0023079	exon	38147	38306	38147	ID=Msa1404670-mRNA-1:exon:23722;Parent=Msa1404670-mRNA-1
tig0023079	exon	38738	39270	38738	ID=Msa1404670-mRNA-1:exon:23723;Parent=Msa1404670-mRNA-1
tig0023079	five_prime_UTR	36860	37041	36860	ID=Msa1404670-mRNA-1:five_prime_utr;Parent=Msa1404670-mRNA-1
tig0023079	CDS	37042	37120	37042	ID=Msa1404670-mRNA-1:cds;Parent=Msa1404670-mRNA-1
tig0023079	CDS	38147	38306	38147	ID=Msa1404670-mRNA-1:cds;Parent=Msa1404670-mRNA-1
tig0023079	CDS	38738	38987	38738	ID=Msa1404670-mRNA-1:cds;Parent=Msa1404670-mRNA-1
tig0023079	three_prime_UTR	38988	39270	38988	ID=Msa1404670-mRNA-1:three_prime_utr;Parent=Msa1404670-mRNA-1

Gene Sequence

>Msa1404670

ATGGAAACCTTACCTTTGGAAATCTGTATGAAGATATTCTGTTTCTTAGACCACACCCATCTTGCTGTTTCTCAACAAGTCTGTAGGAAGTGGAAGCTCATGGCCTCGGACAATGCTCTATGGTCAAACCTTTTTAAGGAGAGATGGGGAGGAGATCATGCTGCTTTTTATGCTCCTCTTGGTTCAAAATCATGGAAAGAAGTGTATGAGGCGCAAGATCGATGCGATCGAGTTGGATTGGGTTTGAAGATTGTTAGAGAAGGAAGTGACTACTATCTTGTTCACCAAGGTGAGGTACAACGATATCTAGGTTCAAGAAAAAATCGGCGACAAGTATCTGGTCATACTTCTAGTTCAGAAACAGACTTCACTGGAGAAAGTTCTGTAGCTGAAGAGAGATCATGTCGAGGAATCTTGGACAAAATTCTTTTTTTCATTGGGGATTTGGAAGCTGCTTCTGTTGATGCCAAACGCAGCCGTGTGATATAA

Protein sequence

>Msa1404670

METLPLEICMKIFCFLDHTHLAVSQQVCRKWKLMASDNALWSNLFKERWGGDHAAFYAPLGSKSWKEVYEAQDRCDRVGLGLKIVREGSDYYLVHQGEVQRYLGSRKNRRQVSGHTSSSETDFTGESSVAEERSCRGILDKILFFIGDLEAASVDAKRSRVI*