AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404670 MtrunA17_Chr3g0127331 98.765 162 2 0 1 162 1 162 5.16e-119 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 39 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGTAAGGTTTCCATTT+TGG 0.114718 tig0023079:-37037 None:intergenic
CTCCCCATCTCTCCTTAAAA+AGG 0.245866 tig0023079:-38196 None:intergenic
CACTGTGAACTTTCACTATT+GGG 0.252264 tig0023079:-39005 None:intergenic
CCACTGTGAACTTTCACTAT+TGG 0.288552 tig0023079:-39006 None:intergenic
GTTATATCTTACTACAATAT+TGG 0.321352 tig0023079:+39132 Msa1404670:three_prime_UTR
CTATAATCTAATCCCCAAAA+TGG 0.329374 tig0023079:+37023 Msa1404670:exon
CACTCTATCTATCTGTCTTT+CGG 0.341213 tig0023079:-36887 None:intergenic
AAAGGTAGCAACAGTTTCCT+TGG 0.390750 tig0023079:-36942 None:intergenic
CAAAATGGAAACCTTACCTT+TGG 0.392712 tig0023079:+37038 Msa1404670:exon
CTCCTCTTGGTTCAAAATCA+TGG 0.393681 tig0023079:+38240 Msa1404670:CDS
GAGATCATGTCGAGGAATCT+TGG 0.402090 tig0023079:+38894 Msa1404670:CDS
TAGAAGGAGGAAGCAGTTGT+TGG 0.420420 tig0023079:+36855 None:intergenic
AATATATAATTTAATTATCA+AGG 0.424029 tig0023079:-39188 None:intergenic
TGGCCTCGGACAATGCTCTA+TGG 0.432233 tig0023079:+38168 Msa1404670:CDS
TTATATCACACGGCTGCGTT+TGG 0.432650 tig0023079:-38965 None:intergenic
TAGAGTGTTAGATTAGAAAC+AGG 0.436604 tig0023079:+36903 Msa1404670:five_prime_UTR
CATACAGATTTCCAAAGGTA+AGG 0.450513 tig0023079:-37049 None:intergenic
ACTTTCACTATTGGGTTGAA+TGG 0.462372 tig0023079:-38997 None:intergenic
GGTGAGGTACAACGATATCT+AGG 0.477811 tig0023079:+38787 Msa1404670:CDS
AGTTCAGAAACAGACTTCAC+TGG 0.488792 tig0023079:+38850 Msa1404670:CDS
GAAGTGGAAGCTCATGGCCT+CGG 0.508465 tig0023079:+38154 Msa1404670:CDS
GGTTTGAAGATTGTTAGAGA+AGG 0.530829 tig0023079:+38739 Msa1404670:CDS
TTGTTGAGAAACAGCAAGAT+GGG 0.537051 tig0023079:-37097 None:intergenic
ATCATGGAAAGAAGTGTATG+AGG 0.545115 tig0023079:+38256 Msa1404670:CDS
CATCTTGCTGTTTCTCAACA+AGG 0.545411 tig0023079:+37099 Msa1404670:CDS
CAAGATCGATGCGATCGAGT+TGG 0.561970 tig0023079:+38281 Msa1404670:CDS
ATTGGGTTGAATGGTAGAGA+TGG 0.590103 tig0023079:-38988 None:intergenic
CTGTAGGAAGTGGAAGCTCA+TGG 0.592096 tig0023079:+38148 Msa1404670:CDS
CTTGTTGAGAAACAGCAAGA+TGG 0.595023 tig0023079:-37098 None:intergenic
ATCTTCATACAGATTTCCAA+AGG 0.614774 tig0023079:-37054 None:intergenic
TTTAAGTTGTATTTCAGACA+AGG 0.626907 tig0023079:+39228 Msa1404670:three_prime_UTR
GAGAAACAGCAAGATGGGTG+TGG 0.636024 tig0023079:-37092 None:intergenic
GATATCGTTGTACCTCACCT+TGG 0.640965 tig0023079:-38783 None:intergenic
CTATCTTGTTCACCAAGGTG+AGG 0.666547 tig0023079:+38771 Msa1404670:CDS
GTAGAGATGGTTATATCACA+CGG 0.677630 tig0023079:-38975 None:intergenic
TGACCATAGAGCATTGTCCG+AGG 0.683112 tig0023079:-38171 None:intergenic
GCTGAAGAGAGATCATGTCG+AGG 0.706201 tig0023079:+38886 Msa1404670:CDS
GACTACTATCTTGTTCACCA+AGG 0.711703 tig0023079:+38766 Msa1404670:CDS
CCAATAGTGAAAGTTCACAG+TGG 0.758241 tig0023079:+39006 Msa1404670:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTAATTAATAATAATTT+TGG + tig0023079:38469-38488 Msa1404670:intron 0.0%
!!! TTATTAATTAATAATAATTT+TGG + tig0023079:38469-38488 Msa1404670:intron 0.0%
!!! AAAAAATTAACAAATTGTTT+TGG - tig0023079:37935-37954 None:intergenic 10.0%
!!! TTTTAGAAGAAAAAAAATAT+GGG - tig0023079:38498-38517 None:intergenic 10.0%
!!! AAAAAATTAACAAATTGTTT+TGG - tig0023079:37935-37954 None:intergenic 10.0%
!!! TTTTAGAAGAAAAAAAATAT+GGG - tig0023079:38498-38517 None:intergenic 10.0%
!! AATTGTATAACAAAATTTGT+TGG - tig0023079:37548-37567 None:intergenic 15.0%
!!! AACAATAAAGATTGAATTTT+AGG - tig0023079:37728-37747 None:intergenic 15.0%
!! AATTGAATCAATCATAATAT+TGG + tig0023079:37834-37853 Msa1404670:intron 15.0%
!!! GTTTTAGAAGAAAAAAAATA+TGG - tig0023079:38499-38518 None:intergenic 15.0%
!!! ATAATTTGTTATGTTGAATA+TGG - tig0023079:38603-38622 None:intergenic 15.0%
!!! TTTTTAATTCTTCACAAAAT+AGG + tig0023079:38716-38735 Msa1404670:intron 15.0%
!!! TTTTAATTCTTCACAAAATA+GGG + tig0023079:38717-38736 Msa1404670:intron 15.0%
!!! ACAAAATTCTTTTTTTCATT+GGG + tig0023079:38917-38936 Msa1404670:CDS 15.0%
!! AATTGTATAACAAAATTTGT+TGG - tig0023079:37548-37567 None:intergenic 15.0%
!!! AACAATAAAGATTGAATTTT+AGG - tig0023079:37728-37747 None:intergenic 15.0%
!! AATTGAATCAATCATAATAT+TGG + tig0023079:37834-37853 Msa1404670:intron 15.0%
!!! GTTTTAGAAGAAAAAAAATA+TGG - tig0023079:38499-38518 None:intergenic 15.0%
!!! ATAATTTGTTATGTTGAATA+TGG - tig0023079:38603-38622 None:intergenic 15.0%
!!! TTTTTAATTCTTCACAAAAT+AGG + tig0023079:38716-38735 Msa1404670:intron 15.0%
!!! TTTTAATTCTTCACAAAATA+GGG + tig0023079:38717-38736 Msa1404670:intron 15.0%
!!! ACAAAATTCTTTTTTTCATT+GGG + tig0023079:38917-38936 Msa1404670:CDS 15.0%
!! CAAGAATATAAAAATGAAGA+TGG - tig0023079:37155-37174 None:intergenic 20.0%
!!! ATTTGAAATTCATAAGTCAA+CGG - tig0023079:37221-37240 None:intergenic 20.0%
!! TTATTGCTTCAAATTAAACT+AGG - tig0023079:37592-37611 None:intergenic 20.0%
!!! TCAATCTTTATTGTTTTGAT+CGG + tig0023079:37733-37752 Msa1404670:intron 20.0%
!! TTGACTGTAATGATATAAAA+AGG - tig0023079:37816-37835 None:intergenic 20.0%
!! ATCAATCATAATATTGGATT+AGG + tig0023079:37840-37859 Msa1404670:intron 20.0%
!!! TTGTCAAATATCTTTTTAGA+GGG - tig0023079:38042-38061 None:intergenic 20.0%
!!! CTGAGTTTATTACATTATTT+TGG + tig0023079:38092-38111 Msa1404670:intron 20.0%
!! AAAACAATTTGTCAAATTCA+AGG - tig0023079:38123-38142 None:intergenic 20.0%
!! TTTAATTCTTCACAAAATAG+GGG + tig0023079:38718-38737 Msa1404670:intron 20.0%
!!! GACAAAATTCTTTTTTTCAT+TGG + tig0023079:38916-38935 Msa1404670:CDS 20.0%
!!! CAAAATTCTTTTTTTCATTG+GGG + tig0023079:38918-38937 Msa1404670:CDS 20.0%
!! GTTATATCTTACTACAATAT+TGG + tig0023079:39132-39151 Msa1404670:three_prime_UTR 20.0%
!! TATGTATGTATAAAAAACTG+TGG + tig0023079:39158-39177 Msa1404670:three_prime_UTR 20.0%
!! CAAGAATATAAAAATGAAGA+TGG - tig0023079:37155-37174 None:intergenic 20.0%
!!! ATTTGAAATTCATAAGTCAA+CGG - tig0023079:37221-37240 None:intergenic 20.0%
!! TTATTGCTTCAAATTAAACT+AGG - tig0023079:37592-37611 None:intergenic 20.0%
!!! TCAATCTTTATTGTTTTGAT+CGG + tig0023079:37733-37752 Msa1404670:intron 20.0%
!! TTGACTGTAATGATATAAAA+AGG - tig0023079:37816-37835 None:intergenic 20.0%
!! ATCAATCATAATATTGGATT+AGG + tig0023079:37840-37859 Msa1404670:intron 20.0%
!!! TTGTCAAATATCTTTTTAGA+GGG - tig0023079:38042-38061 None:intergenic 20.0%
!!! CTGAGTTTATTACATTATTT+TGG + tig0023079:38092-38111 Msa1404670:intron 20.0%
!! AAAACAATTTGTCAAATTCA+AGG - tig0023079:38123-38142 None:intergenic 20.0%
!! TTTAATTCTTCACAAAATAG+GGG + tig0023079:38718-38737 Msa1404670:intron 20.0%
!!! GACAAAATTCTTTTTTTCAT+TGG + tig0023079:38916-38935 Msa1404670:CDS 20.0%
!!! CAAAATTCTTTTTTTCATTG+GGG + tig0023079:38918-38937 Msa1404670:CDS 20.0%
!! GTTATATCTTACTACAATAT+TGG + tig0023079:39132-39151 Msa1404670:three_prime_UTR 20.0%
!! TATGTATGTATAAAAAACTG+TGG + tig0023079:39158-39177 Msa1404670:three_prime_UTR 20.0%
! GTTTCAAGAAAGAGAAAAAA+AGG - tig0023079:36963-36982 None:intergenic 25.0%
! AATAACAATATTTCAACCGA+TGG - tig0023079:37256-37275 None:intergenic 25.0%
! TTATTAGATCTGAATCTGTA+TGG + tig0023079:37271-37290 Msa1404670:intron 25.0%
! TGTTGGATATCATATGATAT+AGG - tig0023079:37531-37550 None:intergenic 25.0%
!! TTCTTTGAAAAGAAACATAG+CGG - tig0023079:37621-37640 None:intergenic 25.0%
!! ACTGTGATTTTATGATACAT+TGG + tig0023079:37769-37788 Msa1404670:intron 25.0%
!! TTCCTTTTAATGTTACACAT+AGG + tig0023079:37961-37980 Msa1404670:intron 25.0%
! AACCTATGTGTAACATTAAA+AGG - tig0023079:37966-37985 None:intergenic 25.0%
!! CTTGTCAAATATCTTTTTAG+AGG - tig0023079:38043-38062 None:intergenic 25.0%
! TTAAATGCCATGATTATTGA+AGG + tig0023079:38379-38398 Msa1404670:intron 25.0%
! AAAATCTCCTTCAATAATCA+TGG - tig0023079:38389-38408 None:intergenic 25.0%
! ATCTAGGTTCAAGAAAAAAT+CGG + tig0023079:38803-38822 Msa1404670:CDS 25.0%
!!! TTTAAGTTGTATTTCAGACA+AGG + tig0023079:39228-39247 Msa1404670:three_prime_UTR 25.0%
! GTTTCAAGAAAGAGAAAAAA+AGG - tig0023079:36963-36982 None:intergenic 25.0%
! AATAACAATATTTCAACCGA+TGG - tig0023079:37256-37275 None:intergenic 25.0%
! TTATTAGATCTGAATCTGTA+TGG + tig0023079:37271-37290 Msa1404670:intron 25.0%
! TGTTGGATATCATATGATAT+AGG - tig0023079:37531-37550 None:intergenic 25.0%
!! TTCTTTGAAAAGAAACATAG+CGG - tig0023079:37621-37640 None:intergenic 25.0%
!! ACTGTGATTTTATGATACAT+TGG + tig0023079:37769-37788 Msa1404670:intron 25.0%
!! TTCCTTTTAATGTTACACAT+AGG + tig0023079:37961-37980 Msa1404670:intron 25.0%
! AACCTATGTGTAACATTAAA+AGG - tig0023079:37966-37985 None:intergenic 25.0%
!! CTTGTCAAATATCTTTTTAG+AGG - tig0023079:38043-38062 None:intergenic 25.0%
! TTAAATGCCATGATTATTGA+AGG + tig0023079:38379-38398 Msa1404670:intron 25.0%
! AAAATCTCCTTCAATAATCA+TGG - tig0023079:38389-38408 None:intergenic 25.0%
! ATCTAGGTTCAAGAAAAAAT+CGG + tig0023079:38803-38822 Msa1404670:CDS 25.0%
!!! TTTAAGTTGTATTTCAGACA+AGG + tig0023079:39228-39247 Msa1404670:three_prime_UTR 25.0%
! TAGAGTGTTAGATTAGAAAC+AGG + tig0023079:36903-36922 Msa1404670:five_prime_UTR 30.0%
CTATAATCTAATCCCCAAAA+TGG + tig0023079:37023-37042 Msa1404670:exon 30.0%
! AAAGGTAAGGTTTCCATTTT+GGG - tig0023079:37039-37058 None:intergenic 30.0%
ATCTTCATACAGATTTCCAA+AGG - tig0023079:37057-37076 None:intergenic 30.0%
TCTTTATCAGAAAACAGTGT+TGG + tig0023079:37402-37421 Msa1404670:intron 30.0%
!!! TTTTGTTTTCTGCGAAGAAA+TGG + tig0023079:37471-37490 Msa1404670:intron 30.0%
AAATATGAATCAAGTCCATG+TGG - tig0023079:37692-37711 None:intergenic 30.0%
!! CAAATTGTTTTACAGTCTGT+AGG + tig0023079:38132-38151 Msa1404670:intron 30.0%
! TCTATGGTCAAACCTTTTTA+AGG + tig0023079:38184-38203 Msa1404670:CDS 30.0%
!! AAACCTTTTTAAGGAGAGAT+GGG + tig0023079:38193-38212 Msa1404670:CDS 30.0%
TTTCTGCACACTTATAACAT+TGG + tig0023079:38533-38552 Msa1404670:intron 30.0%
TTATTGAACTCTGACACAAA+GGG + tig0023079:38686-38705 Msa1404670:intron 30.0%
!!! TCTTTTTTTCATTGGGGATT+TGG + tig0023079:38924-38943 Msa1404670:CDS 30.0%
GATCACATAAGTAGTGTTTA+TGG + tig0023079:39250-39269 Msa1404670:three_prime_UTR 30.0%
! TAGAGTGTTAGATTAGAAAC+AGG + tig0023079:36903-36922 Msa1404670:five_prime_UTR 30.0%
CTATAATCTAATCCCCAAAA+TGG + tig0023079:37023-37042 Msa1404670:exon 30.0%
! AAAGGTAAGGTTTCCATTTT+GGG - tig0023079:37039-37058 None:intergenic 30.0%
ATCTTCATACAGATTTCCAA+AGG - tig0023079:37057-37076 None:intergenic 30.0%
TCTTTATCAGAAAACAGTGT+TGG + tig0023079:37402-37421 Msa1404670:intron 30.0%
!!! TTTTGTTTTCTGCGAAGAAA+TGG + tig0023079:37471-37490 Msa1404670:intron 30.0%
AAATATGAATCAAGTCCATG+TGG - tig0023079:37692-37711 None:intergenic 30.0%
!! CAAATTGTTTTACAGTCTGT+AGG + tig0023079:38132-38151 Msa1404670:intron 30.0%
! TCTATGGTCAAACCTTTTTA+AGG + tig0023079:38184-38203 Msa1404670:CDS 30.0%
!! AAACCTTTTTAAGGAGAGAT+GGG + tig0023079:38193-38212 Msa1404670:CDS 30.0%
TTTCTGCACACTTATAACAT+TGG + tig0023079:38533-38552 Msa1404670:intron 30.0%
TTATTGAACTCTGACACAAA+GGG + tig0023079:38686-38705 Msa1404670:intron 30.0%
!!! TCTTTTTTTCATTGGGGATT+TGG + tig0023079:38924-38943 Msa1404670:CDS 30.0%
CACTCTATCTATCTGTCTTT+CGG - tig0023079:36890-36909 None:intergenic 35.0%
!!! TTCCTTGGATTCTGTTTTTG+TGG - tig0023079:36930-36949 None:intergenic 35.0%
! AAGGTAAGGTTTCCATTTTG+GGG - tig0023079:37038-37057 None:intergenic 35.0%
! CAAAGGTAAGGTTTCCATTT+TGG - tig0023079:37040-37059 None:intergenic 35.0%
CAAAATGGAAACCTTACCTT+TGG + tig0023079:37038-37057 Msa1404670:exon 35.0%
CATACAGATTTCCAAAGGTA+AGG - tig0023079:37052-37071 None:intergenic 35.0%
TTGTTGAGAAACAGCAAGAT+GGG - tig0023079:37100-37119 None:intergenic 35.0%
AAATCAGTTGCATGTTCCAT+CGG + tig0023079:37237-37256 Msa1404670:intron 35.0%
! TTATCAGAAAACAGTGTTGG+TGG + tig0023079:37405-37424 Msa1404670:intron 35.0%
GGATTAACAATATGTGACAG+AGG - tig0023079:37510-37529 None:intergenic 35.0%
GGTCAAATTCCAGATCATAA+TGG - tig0023079:37661-37680 None:intergenic 35.0%
TTTGACCAAAATTTGCCACA+TGG + tig0023079:37674-37693 Msa1404670:intron 35.0%
ATAGGTTAAAACCGACGATT+TGG + tig0023079:37979-37998 Msa1404670:intron 35.0%
!! AAAACCGACGATTTGGTATT+TGG + tig0023079:37986-38005 Msa1404670:intron 35.0%
ATTTGGCAACTGAGTGTTAA+CGG + tig0023079:38003-38022 Msa1404670:intron 35.0%
!! CAAACCTTTTTAAGGAGAGA+TGG + tig0023079:38192-38211 Msa1404670:CDS 35.0%
!! AACCTTTTTAAGGAGAGATG+GGG + tig0023079:38194-38213 Msa1404670:CDS 35.0%
! TTCCATGATTTTGAACCAAG+AGG - tig0023079:38245-38264 None:intergenic 35.0%
! ATCATGGAAAGAAGTGTATG+AGG + tig0023079:38256-38275 Msa1404670:CDS 35.0%
ATAATTGCAAGCGTGTGATT+AGG - tig0023079:38423-38442 None:intergenic 35.0%
ATTATTCTTGTCCCTTGAGA+TGG + tig0023079:38438-38457 Msa1404670:intron 35.0%
! TAATTTTCACGCCATCTCAA+GGG - tig0023079:38452-38471 None:intergenic 35.0%
! ATAATTTTCACGCCATCTCA+AGG - tig0023079:38453-38472 None:intergenic 35.0%
CACACTTATAACATTGGTGT+TGG + tig0023079:38539-38558 Msa1404670:intron 35.0%
CTAAAGCAAATCCAAGTAAG+AGG - tig0023079:38568-38587 None:intergenic 35.0%
CTTATTGAACTCTGACACAA+AGG + tig0023079:38685-38704 Msa1404670:intron 35.0%
GGTTTGAAGATTGTTAGAGA+AGG + tig0023079:38739-38758 Msa1404670:CDS 35.0%
GTAGAGATGGTTATATCACA+CGG - tig0023079:38978-38997 None:intergenic 35.0%
!! ACTTTCACTATTGGGTTGAA+TGG - tig0023079:39000-39019 None:intergenic 35.0%
CACTGTGAACTTTCACTATT+GGG - tig0023079:39008-39027 None:intergenic 35.0%
CACTCTATCTATCTGTCTTT+CGG - tig0023079:36890-36909 None:intergenic 35.0%
!!! TTCCTTGGATTCTGTTTTTG+TGG - tig0023079:36930-36949 None:intergenic 35.0%
! AAGGTAAGGTTTCCATTTTG+GGG - tig0023079:37038-37057 None:intergenic 35.0%
! CAAAGGTAAGGTTTCCATTT+TGG - tig0023079:37040-37059 None:intergenic 35.0%
CAAAATGGAAACCTTACCTT+TGG + tig0023079:37038-37057 Msa1404670:exon 35.0%
CATACAGATTTCCAAAGGTA+AGG - tig0023079:37052-37071 None:intergenic 35.0%
TTGTTGAGAAACAGCAAGAT+GGG - tig0023079:37100-37119 None:intergenic 35.0%
AAATCAGTTGCATGTTCCAT+CGG + tig0023079:37237-37256 Msa1404670:intron 35.0%
! TTATCAGAAAACAGTGTTGG+TGG + tig0023079:37405-37424 Msa1404670:intron 35.0%
GGATTAACAATATGTGACAG+AGG - tig0023079:37510-37529 None:intergenic 35.0%
GGTCAAATTCCAGATCATAA+TGG - tig0023079:37661-37680 None:intergenic 35.0%
TTTGACCAAAATTTGCCACA+TGG + tig0023079:37674-37693 Msa1404670:intron 35.0%
ATAGGTTAAAACCGACGATT+TGG + tig0023079:37979-37998 Msa1404670:intron 35.0%
!! AAAACCGACGATTTGGTATT+TGG + tig0023079:37986-38005 Msa1404670:intron 35.0%
ATTTGGCAACTGAGTGTTAA+CGG + tig0023079:38003-38022 Msa1404670:intron 35.0%
!! CAAACCTTTTTAAGGAGAGA+TGG + tig0023079:38192-38211 Msa1404670:CDS 35.0%
!! AACCTTTTTAAGGAGAGATG+GGG + tig0023079:38194-38213 Msa1404670:CDS 35.0%
! TTCCATGATTTTGAACCAAG+AGG - tig0023079:38245-38264 None:intergenic 35.0%
! ATCATGGAAAGAAGTGTATG+AGG + tig0023079:38256-38275 Msa1404670:CDS 35.0%
ATAATTGCAAGCGTGTGATT+AGG - tig0023079:38423-38442 None:intergenic 35.0%
ATTATTCTTGTCCCTTGAGA+TGG + tig0023079:38438-38457 Msa1404670:intron 35.0%
! TAATTTTCACGCCATCTCAA+GGG - tig0023079:38452-38471 None:intergenic 35.0%
! ATAATTTTCACGCCATCTCA+AGG - tig0023079:38453-38472 None:intergenic 35.0%
CACACTTATAACATTGGTGT+TGG + tig0023079:38539-38558 Msa1404670:intron 35.0%
CTAAAGCAAATCCAAGTAAG+AGG - tig0023079:38568-38587 None:intergenic 35.0%
CTTATTGAACTCTGACACAA+AGG + tig0023079:38685-38704 Msa1404670:intron 35.0%
GGTTTGAAGATTGTTAGAGA+AGG + tig0023079:38739-38758 Msa1404670:CDS 35.0%
GTAGAGATGGTTATATCACA+CGG - tig0023079:38978-38997 None:intergenic 35.0%
!! ACTTTCACTATTGGGTTGAA+TGG - tig0023079:39000-39019 None:intergenic 35.0%
CACTGTGAACTTTCACTATT+GGG - tig0023079:39008-39027 None:intergenic 35.0%
GACCACAAAAACAGAATCCA+AGG + tig0023079:36925-36944 Msa1404670:five_prime_UTR 40.0%
AAAGGTAGCAACAGTTTCCT+TGG - tig0023079:36945-36964 None:intergenic 40.0%
CGTGCAACAAAAACAGTAAC+TGG - tig0023079:36990-37009 None:intergenic 40.0%
CTTGTTGAGAAACAGCAAGA+TGG - tig0023079:37101-37120 None:intergenic 40.0%
!! CATCTTGCTGTTTCTCAACA+AGG + tig0023079:37099-37118 Msa1404670:CDS 40.0%
! GTGTTGGTGGAATTGAAAAC+AGG + tig0023079:37418-37437 Msa1404670:intron 40.0%
GGTTCACAGAACACAGTTAT+TGG - tig0023079:37571-37590 None:intergenic 40.0%
! CAAGTCCATGTGGCAAATTT+TGG - tig0023079:37682-37701 None:intergenic 40.0%
GCAAATCAGCAAGACATATG+CGG - tig0023079:37913-37932 None:intergenic 40.0%
GTTGCCAAATACCAAATCGT+CGG - tig0023079:37993-38012 None:intergenic 40.0%
! GTTTTACAGTCTGTAGGAAG+TGG + tig0023079:38138-38157 Msa1404670:intron 40.0%
CTCCTCTTGGTTCAAAATCA+TGG + tig0023079:38240-38259 Msa1404670:CDS 40.0%
TTACTCTGCTGAGAGTAGTA+CGG + tig0023079:38321-38340 Msa1404670:intron 40.0%
GACTACTATCTTGTTCACCA+AGG + tig0023079:38766-38785 Msa1404670:CDS 40.0%
AAAAATCGGCGACAAGTATC+TGG + tig0023079:38817-38836 Msa1404670:CDS 40.0%
AGTTCAGAAACAGACTTCAC+TGG + tig0023079:38850-38869 Msa1404670:CDS 40.0%
!! ATTGGGTTGAATGGTAGAGA+TGG - tig0023079:38991-39010 None:intergenic 40.0%
CCACTGTGAACTTTCACTAT+TGG - tig0023079:39009-39028 None:intergenic 40.0%
CCAATAGTGAAAGTTCACAG+TGG + tig0023079:39006-39025 Msa1404670:three_prime_UTR 40.0%
GACCACAAAAACAGAATCCA+AGG + tig0023079:36925-36944 Msa1404670:five_prime_UTR 40.0%
AAAGGTAGCAACAGTTTCCT+TGG - tig0023079:36945-36964 None:intergenic 40.0%
CGTGCAACAAAAACAGTAAC+TGG - tig0023079:36990-37009 None:intergenic 40.0%
CTTGTTGAGAAACAGCAAGA+TGG - tig0023079:37101-37120 None:intergenic 40.0%
!! CATCTTGCTGTTTCTCAACA+AGG + tig0023079:37099-37118 Msa1404670:CDS 40.0%
! GTGTTGGTGGAATTGAAAAC+AGG + tig0023079:37418-37437 Msa1404670:intron 40.0%
GGTTCACAGAACACAGTTAT+TGG - tig0023079:37571-37590 None:intergenic 40.0%
! CAAGTCCATGTGGCAAATTT+TGG - tig0023079:37682-37701 None:intergenic 40.0%
GCAAATCAGCAAGACATATG+CGG - tig0023079:37913-37932 None:intergenic 40.0%
GTTGCCAAATACCAAATCGT+CGG - tig0023079:37993-38012 None:intergenic 40.0%
! GTTTTACAGTCTGTAGGAAG+TGG + tig0023079:38138-38157 Msa1404670:intron 40.0%
CTCCTCTTGGTTCAAAATCA+TGG + tig0023079:38240-38259 Msa1404670:CDS 40.0%
TTACTCTGCTGAGAGTAGTA+CGG + tig0023079:38321-38340 Msa1404670:intron 40.0%
GACTACTATCTTGTTCACCA+AGG + tig0023079:38766-38785 Msa1404670:CDS 40.0%
AAAAATCGGCGACAAGTATC+TGG + tig0023079:38817-38836 Msa1404670:CDS 40.0%
AGTTCAGAAACAGACTTCAC+TGG + tig0023079:38850-38869 Msa1404670:CDS 40.0%
!! ATTGGGTTGAATGGTAGAGA+TGG - tig0023079:38991-39010 None:intergenic 40.0%
CCACTGTGAACTTTCACTAT+TGG - tig0023079:39009-39028 None:intergenic 40.0%
CCAATAGTGAAAGTTCACAG+TGG + tig0023079:39006-39025 Msa1404670:three_prime_UTR 40.0%
! CCAGATCATAATGGAAGCTG+AGG - tig0023079:37652-37671 None:intergenic 45.0%
CCTCAGCTTCCATTATGATC+TGG + tig0023079:37649-37668 Msa1404670:intron 45.0%
CTCCCCATCTCTCCTTAAAA+AGG - tig0023079:38199-38218 None:intergenic 45.0%
!! CTTTTTAAGGAGAGATGGGG+AGG + tig0023079:38197-38216 Msa1404670:CDS 45.0%
!!! GCTGCTTTTTATGCTCCTCT+TGG + tig0023079:38227-38246 Msa1404670:CDS 45.0%
CTATCTTGTTCACCAAGGTG+AGG + tig0023079:38771-38790 Msa1404670:CDS 45.0%
GATATCGTTGTACCTCACCT+TGG - tig0023079:38786-38805 None:intergenic 45.0%
GGTGAGGTACAACGATATCT+AGG + tig0023079:38787-38806 Msa1404670:CDS 45.0%
GAGATCATGTCGAGGAATCT+TGG + tig0023079:38894-38913 Msa1404670:CDS 45.0%
TTATATCACACGGCTGCGTT+TGG - tig0023079:38968-38987 None:intergenic 45.0%
! CCAGATCATAATGGAAGCTG+AGG - tig0023079:37652-37671 None:intergenic 45.0%
CCTCAGCTTCCATTATGATC+TGG + tig0023079:37649-37668 Msa1404670:intron 45.0%
CTCCCCATCTCTCCTTAAAA+AGG - tig0023079:38199-38218 None:intergenic 45.0%
!! CTTTTTAAGGAGAGATGGGG+AGG + tig0023079:38197-38216 Msa1404670:CDS 45.0%
!!! GCTGCTTTTTATGCTCCTCT+TGG + tig0023079:38227-38246 Msa1404670:CDS 45.0%
CTATCTTGTTCACCAAGGTG+AGG + tig0023079:38771-38790 Msa1404670:CDS 45.0%
GATATCGTTGTACCTCACCT+TGG - tig0023079:38786-38805 None:intergenic 45.0%
GGTGAGGTACAACGATATCT+AGG + tig0023079:38787-38806 Msa1404670:CDS 45.0%
GAGATCATGTCGAGGAATCT+TGG + tig0023079:38894-38913 Msa1404670:CDS 45.0%
TTATATCACACGGCTGCGTT+TGG - tig0023079:38968-38987 None:intergenic 45.0%
!! AATATATAATTTAATTATCA+AGG - tig0023079:39191-39210 None:intergenic 5.0%
!! AATATATAATTTAATTATCA+AGG - tig0023079:39191-39210 None:intergenic 5.0%
GAGAAACAGCAAGATGGGTG+TGG - tig0023079:37095-37114 None:intergenic 50.0%
CTGTAGGAAGTGGAAGCTCA+TGG + tig0023079:38148-38167 Msa1404670:CDS 50.0%
!! TGACCATAGAGCATTGTCCG+AGG - tig0023079:38174-38193 None:intergenic 50.0%
CAAGATCGATGCGATCGAGT+TGG + tig0023079:38281-38300 Msa1404670:CDS 50.0%
!! GGTGTTGGCTTCCTCTTACT+TGG + tig0023079:38554-38573 Msa1404670:intron 50.0%
GCTGAAGAGAGATCATGTCG+AGG + tig0023079:38886-38905 Msa1404670:CDS 50.0%
GAGAAACAGCAAGATGGGTG+TGG - tig0023079:37095-37114 None:intergenic 50.0%
CTGTAGGAAGTGGAAGCTCA+TGG + tig0023079:38148-38167 Msa1404670:CDS 50.0%
!! TGACCATAGAGCATTGTCCG+AGG - tig0023079:38174-38193 None:intergenic 50.0%
CAAGATCGATGCGATCGAGT+TGG + tig0023079:38281-38300 Msa1404670:CDS 50.0%
!! GGTGTTGGCTTCCTCTTACT+TGG + tig0023079:38554-38573 Msa1404670:intron 50.0%
GCTGAAGAGAGATCATGTCG+AGG + tig0023079:38886-38905 Msa1404670:CDS 50.0%
GAAGTGGAAGCTCATGGCCT+CGG + tig0023079:38154-38173 Msa1404670:CDS 55.0%
TGGCCTCGGACAATGCTCTA+TGG + tig0023079:38168-38187 Msa1404670:CDS 55.0%
GAAGTGGAAGCTCATGGCCT+CGG + tig0023079:38154-38173 Msa1404670:CDS 55.0%
TGGCCTCGGACAATGCTCTA+TGG + tig0023079:38168-38187 Msa1404670:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0023079 gene 36860 39270 36860 ID=Msa1404670;Name=Msa1404670
tig0023079 mRNA 36860 39270 36860 ID=Msa1404670-mRNA-1;Parent=Msa1404670;Name=Msa1404670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=182|1|1|1|1|1|3|283|162
tig0023079 exon 36860 37120 36860 ID=Msa1404670-mRNA-1:exon:23721;Parent=Msa1404670-mRNA-1
tig0023079 exon 38147 38306 38147 ID=Msa1404670-mRNA-1:exon:23722;Parent=Msa1404670-mRNA-1
tig0023079 exon 38738 39270 38738 ID=Msa1404670-mRNA-1:exon:23723;Parent=Msa1404670-mRNA-1
tig0023079 five_prime_UTR 36860 37041 36860 ID=Msa1404670-mRNA-1:five_prime_utr;Parent=Msa1404670-mRNA-1
tig0023079 CDS 37042 37120 37042 ID=Msa1404670-mRNA-1:cds;Parent=Msa1404670-mRNA-1
tig0023079 CDS 38147 38306 38147 ID=Msa1404670-mRNA-1:cds;Parent=Msa1404670-mRNA-1
tig0023079 CDS 38738 38987 38738 ID=Msa1404670-mRNA-1:cds;Parent=Msa1404670-mRNA-1
tig0023079 three_prime_UTR 38988 39270 38988 ID=Msa1404670-mRNA-1:three_prime_utr;Parent=Msa1404670-mRNA-1
Gene Sequence

>Msa1404670

ATGGAAACCTTACCTTTGGAAATCTGTATGAAGATATTCTGTTTCTTAGACCACACCCATCTTGCTGTTTCTCAACAAGTCTGTAGGAAGTGGAAGCTCATGGCCTCGGACAATGCTCTATGGTCAAACCTTTTTAAGGAGAGATGGGGAGGAGATCATGCTGCTTTTTATGCTCCTCTTGGTTCAAAATCATGGAAAGAAGTGTATGAGGCGCAAGATCGATGCGATCGAGTTGGATTGGGTTTGAAGATTGTTAGAGAAGGAAGTGACTACTATCTTGTTCACCAAGGTGAGGTACAACGATATCTAGGTTCAAGAAAAAATCGGCGACAAGTATCTGGTCATACTTCTAGTTCAGAAACAGACTTCACTGGAGAAAGTTCTGTAGCTGAAGAGAGATCATGTCGAGGAATCTTGGACAAAATTCTTTTTTTCATTGGGGATTTGGAAGCTGCTTCTGTTGATGCCAAACGCAGCCGTGTGATATAA

Protein sequence

>Msa1404670

METLPLEICMKIFCFLDHTHLAVSQQVCRKWKLMASDNALWSNLFKERWGGDHAAFYAPLGSKSWKEVYEAQDRCDRVGLGLKIVREGSDYYLVHQGEVQRYLGSRKNRRQVSGHTSSSETDFTGESSVAEERSCRGILDKILFFIGDLEAASVDAKRSRVI*