Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480600 | XP_003602304.1 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 5.61e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480600 | G7J857 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 2.68e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0480600 | 0.806009 | 1.012732e-49 | -8.615850e-47 |
| Msa0039330 | Msa0480600 | 0.805754 | 1.146093e-49 | -8.615850e-47 |
| Msa0043730 | Msa0480600 | 0.806448 | 8.185310e-50 | -8.615850e-47 |
| Msa0048000 | Msa0480600 | 0.811003 | 8.699821e-51 | -8.615850e-47 |
| Msa0050730 | Msa0480600 | 0.806549 | 7.795284e-50 | -8.615850e-47 |
| Msa0050760 | Msa0480600 | 0.816307 | 5.915176e-52 | -8.615850e-47 |
| Msa0090100 | Msa0480600 | 0.800324 | 1.520302e-48 | -8.615850e-47 |
| Msa0092990 | Msa0480600 | 0.812895 | 3.367096e-51 | -8.615850e-47 |
| Msa0102750 | Msa0480600 | 0.838571 | 2.657755e-57 | -8.615850e-47 |
| Msa0105700 | Msa0480600 | 0.805412 | 1.351810e-49 | -8.615850e-47 |
| Msa0115810 | Msa0480600 | 0.809441 | 1.889013e-50 | -8.615850e-47 |
| Msa0120340 | Msa0480600 | 0.835288 | 1.830704e-56 | -8.615850e-47 |
| Msa0152170 | Msa0480600 | 0.804752 | 1.857991e-49 | -8.615850e-47 |
| Msa0182570 | Msa0480600 | 0.808106 | 3.645859e-50 | -8.615850e-47 |
| Msa0188630 | Msa0480600 | 0.803110 | 4.076055e-49 | -8.615850e-47 |
| Msa0195770 | Msa0480600 | 0.801640 | 8.184364e-49 | -8.615850e-47 |
| Msa0217400 | Msa0480600 | 0.819124 | 1.369368e-52 | -8.615850e-47 |
| Msa0223290 | Msa0480600 | 0.824093 | 9.730688e-54 | -8.615850e-47 |
| Msa0223380 | Msa0480600 | 0.851285 | 9.805092e-61 | -8.615850e-47 |
| Msa0233610 | Msa0480600 | 0.822019 | 2.963315e-53 | -8.615850e-47 |
| Msa0365490 | Msa0480600 | 0.836352 | 9.842698e-57 | -8.615850e-47 |
| Msa0376590 | Msa0480600 | 0.800724 | 1.260157e-48 | -8.615850e-47 |
| Msa0377530 | Msa0480600 | 0.808014 | 3.812754e-50 | -8.615850e-47 |
| Msa0388030 | Msa0480600 | -0.808017 | 3.808051e-50 | -8.615850e-47 |
| Msa0389810 | Msa0480600 | 0.813339 | 2.690865e-51 | -8.615850e-47 |
| Msa0425300 | Msa0480600 | 0.844621 | 6.747502e-59 | -8.615850e-47 |
| Msa0442850 | Msa0480600 | 0.830382 | 3.030342e-55 | -8.615850e-47 |
| Msa0449760 | Msa0480600 | 0.805437 | 1.335231e-49 | -8.615850e-47 |
| Msa0457010 | Msa0480600 | 0.806564 | 7.737333e-50 | -8.615850e-47 |
| Msa0458440 | Msa0480600 | 0.837045 | 6.550280e-57 | -8.615850e-47 |
| Msa0464900 | Msa0480600 | 0.823363 | 1.442396e-53 | -8.615850e-47 |
| Msa0465680 | Msa0480600 | -0.809880 | 1.520303e-50 | -8.615850e-47 |
| Msa0467900 | Msa0480600 | -0.805279 | 1.441049e-49 | -8.615850e-47 |
| Msa0468130 | Msa0480600 | 0.810151 | 1.329446e-50 | -8.615850e-47 |
| Msa0473240 | Msa0480600 | 0.841208 | 5.463398e-58 | -8.615850e-47 |
| Msa0480320 | Msa0480600 | 0.801357 | 9.355363e-49 | -8.615850e-47 |
| Msa0480600 | Msa0484780 | 0.817372 | 3.412054e-52 | -8.615850e-47 |
| Msa0480600 | Msa0490350 | 0.824983 | 6.004577e-54 | -8.615850e-47 |
| Msa0480600 | Msa0491520 | 0.814482 | 1.506262e-51 | -8.615850e-47 |
| Msa0480600 | Msa0505060 | 0.827693 | 1.359139e-54 | -8.615850e-47 |
| Msa0480600 | Msa0508200 | 0.827074 | 1.911790e-54 | -8.615850e-47 |
| Msa0480600 | Msa0517490 | 0.817708 | 2.866439e-52 | -8.615850e-47 |
| Msa0480600 | Msa0530650 | 0.807458 | 5.004895e-50 | -8.615850e-47 |
| Msa0480600 | Msa0535060 | 0.801351 | 9.380454e-49 | -8.615850e-47 |
| Msa0480600 | Msa0553460 | 0.820002 | 8.632135e-53 | -8.615850e-47 |
| Msa0480600 | Msa0562440 | 0.822613 | 2.157361e-53 | -8.615850e-47 |
| Msa0480600 | Msa0581920 | 0.809716 | 1.649334e-50 | -8.615850e-47 |
| Msa0480600 | Msa0585700 | 0.823654 | 1.233231e-53 | -8.615850e-47 |
| Msa0480600 | Msa0587190 | 0.807743 | 4.355053e-50 | -8.615850e-47 |
| Msa0480600 | Msa0599580 | 0.826237 | 3.029245e-54 | -8.615850e-47 |
| Msa0480600 | Msa0607540 | 0.818262 | 2.149053e-52 | -8.615850e-47 |
| Msa0480600 | Msa0621590 | 0.844650 | 6.629169e-59 | -8.615850e-47 |
| Msa0480600 | Msa0627350 | 0.805074 | 1.590643e-49 | -8.615850e-47 |
| Msa0480600 | Msa0647830 | 0.817680 | 2.908339e-52 | -8.615850e-47 |
| Msa0480600 | Msa0660300 | 0.814767 | 1.302848e-51 | -8.615850e-47 |
| Msa0480600 | Msa0662650 | 0.811762 | 5.953286e-51 | -8.615850e-47 |
| Msa0480600 | Msa0663710 | 0.809303 | 2.022802e-50 | -8.615850e-47 |
| Msa0480600 | Msa0679550 | 0.811242 | 7.719531e-51 | -8.615850e-47 |
| Msa0480600 | Msa0690440 | 0.818123 | 2.309392e-52 | -8.615850e-47 |
| Msa0480600 | Msa0693380 | 0.803945 | 2.736475e-49 | -8.615850e-47 |
| Msa0480600 | Msa0708860 | 0.808141 | 3.583353e-50 | -8.615850e-47 |
| Msa0480600 | Msa0715110 | 0.849565 | 2.981042e-60 | -8.615850e-47 |
| Msa0480600 | Msa0743260 | 0.819005 | 1.457226e-52 | -8.615850e-47 |
| Msa0480600 | Msa0757050 | 0.802566 | 5.278529e-49 | -8.615850e-47 |
| Msa0480600 | Msa0757080 | 0.837426 | 5.234530e-57 | -8.615850e-47 |
| Msa0480600 | Msa0791910 | 0.822007 | 2.982291e-53 | -8.615850e-47 |
| Msa0480600 | Msa0792090 | 0.806711 | 7.204671e-50 | -8.615850e-47 |
| Msa0480600 | Msa0798070 | 0.836234 | 1.054694e-56 | -8.615850e-47 |
| Msa0480600 | Msa0810760 | 0.806399 | 8.381827e-50 | -8.615850e-47 |
| Msa0480600 | Msa0818110 | 0.825239 | 5.225106e-54 | -8.615850e-47 |
| Msa0480600 | Msa0827470 | 0.806605 | 7.585263e-50 | -8.615850e-47 |
| Msa0480600 | Msa0855430 | 0.804046 | 2.607205e-49 | -8.615850e-47 |
| Msa0480600 | Msa0891040 | 0.827306 | 1.682890e-54 | -8.615850e-47 |
| Msa0480600 | Msa0893810 | 0.829634 | 4.613259e-55 | -8.615850e-47 |
| Msa0480600 | Msa0908170 | 0.824702 | 6.993626e-54 | -8.615850e-47 |
| Msa0480600 | Msa0910980 | -0.818647 | 1.757250e-52 | -8.615850e-47 |
| Msa0480600 | Msa0927670 | 0.800804 | 1.213494e-48 | -8.615850e-47 |
| Msa0480600 | Msa0930400 | -0.802833 | 4.650591e-49 | -8.615850e-47 |
| Msa0480600 | Msa0933440 | 0.817255 | 3.626161e-52 | -8.615850e-47 |
| Msa0480600 | Msa0946080 | 0.814159 | 1.775590e-51 | -8.615850e-47 |
| Msa0480600 | Msa0959010 | 0.814168 | 1.767466e-51 | -8.615850e-47 |
| Msa0480600 | Msa0960160 | 0.800156 | 1.645139e-48 | -8.615850e-47 |
| Msa0480600 | Msa0976250 | 0.836524 | 8.897796e-57 | -8.615850e-47 |
| Msa0480600 | Msa0978700 | 0.802056 | 6.723852e-49 | -8.615850e-47 |
| Msa0480600 | Msa0982270 | 0.811716 | 6.091962e-51 | -8.615850e-47 |
| Msa0480600 | Msa0990960 | 0.818699 | 1.710723e-52 | -8.615850e-47 |
| Msa0480600 | Msa0992490 | -0.811179 | 7.966981e-51 | -8.615850e-47 |
| Msa0480600 | Msa0993530 | 0.819431 | 1.165883e-52 | -8.615850e-47 |
| Msa0480600 | Msa0996170 | 0.802475 | 5.512446e-49 | -8.615850e-47 |
| Msa0480600 | Msa1006850 | 0.826460 | 2.679853e-54 | -8.615850e-47 |
| Msa0480600 | Msa1015060 | 0.800036 | 1.740194e-48 | -8.615850e-47 |
| Msa0480600 | Msa1021340 | 0.805709 | 1.171265e-49 | -8.615850e-47 |
| Msa0480600 | Msa1021510 | 0.804831 | 1.788426e-49 | -8.615850e-47 |
| Msa0480600 | Msa1039880 | 0.826757 | 2.276886e-54 | -8.615850e-47 |
| Msa0480600 | Msa1043920 | 0.814249 | 1.695901e-51 | -8.615850e-47 |
| Msa0480600 | Msa1047720 | 0.806655 | 7.402326e-50 | -8.615850e-47 |
| Msa0480600 | Msa1068200 | -0.809523 | 1.814189e-50 | -8.615850e-47 |
| Msa0480600 | Msa1082500 | 0.822973 | 1.778655e-53 | -8.615850e-47 |
| Msa0480600 | Msa1087470 | 0.828649 | 7.996286e-55 | -8.615850e-47 |
| Msa0480600 | Msa1092090 | 0.825735 | 3.985937e-54 | -8.615850e-47 |
| Msa0480600 | Msa1092820 | 0.815114 | 1.091262e-51 | -8.615850e-47 |
| Msa0480600 | Msa1100480 | 0.812739 | 3.643758e-51 | -8.615850e-47 |
| Msa0480600 | Msa1105500 | 0.803652 | 3.147111e-49 | -8.615850e-47 |
| Msa0480600 | Msa1135880 | 0.808865 | 2.509945e-50 | -8.615850e-47 |
| Msa0480600 | Msa1151710 | 0.818671 | 1.735983e-52 | -8.615850e-47 |
| Msa0480600 | Msa1162550 | -0.810222 | 1.283140e-50 | -8.615850e-47 |
| Msa0480600 | Msa1199560 | 0.808448 | 3.082561e-50 | -8.615850e-47 |
| Msa0480600 | Msa1219430 | 0.824851 | 6.450276e-54 | -8.615850e-47 |
| Msa0480600 | Msa1233500 | 0.853225 | 2.750757e-61 | -8.615850e-47 |
| Msa0480600 | Msa1233890 | 0.817816 | 2.710233e-52 | -8.615850e-47 |
| Msa0480600 | Msa1247030 | 0.813751 | 2.184699e-51 | -8.615850e-47 |
| Msa0480600 | Msa1275770 | 0.830379 | 3.036422e-55 | -8.615850e-47 |
| Msa0480600 | Msa1276440 | 0.801177 | 1.018220e-48 | -8.615850e-47 |
| Msa0480600 | Msa1279210 | 0.807839 | 4.155399e-50 | -8.615850e-47 |
| Msa0480600 | Msa1306750 | 0.820894 | 5.390211e-53 | -8.615850e-47 |
| Msa0480600 | Msa1307740 | 0.809019 | 2.327119e-50 | -8.615850e-47 |
| Msa0480600 | Msa1308590 | 0.802703 | 4.947834e-49 | -8.615850e-47 |
| Msa0480600 | Msa1310210 | 0.803573 | 3.268679e-49 | -8.615850e-47 |
| Msa0480600 | Msa1316560 | -0.801594 | 8.363976e-49 | -8.615850e-47 |
| Msa0480600 | Msa1328700 | 0.801325 | 9.495321e-49 | -8.615850e-47 |
| Msa0480600 | Msa1369530 | 0.822267 | 2.595822e-53 | -8.615850e-47 |
| Msa0480600 | Msa1386430 | 0.829701 | 4.443006e-55 | -8.615850e-47 |
| Msa0480600 | Msa1390120 | 0.812469 | 4.174673e-51 | -8.615850e-47 |
| Msa0480600 | Msa1395530 | 0.819126 | 1.367941e-52 | -8.615850e-47 |
| Msa0480600 | Msa1397260 | 0.813145 | 2.968725e-51 | -8.615850e-47 |
| Msa0480600 | Msa1401140 | 0.816705 | 4.819109e-52 | -8.615850e-47 |
| Msa0480600 | Msa1404540 | 0.823597 | 1.271464e-53 | -8.615850e-47 |
| Msa0480600 | Msa1404670 | 0.999009 | 8.098674e-286 | -8.615850e-47 |
| Msa0480600 | Msa1407650 | 0.810247 | 1.267191e-50 | -8.615850e-47 |
| Msa0480600 | Msa1408790 | 0.824734 | 6.873805e-54 | -8.615850e-47 |
| Msa0480600 | Msa1431060 | 0.814745 | 1.317157e-51 | -8.615850e-47 |
| Msa0480600 | Msa1435400 | 0.808898 | 2.470082e-50 | -8.615850e-47 |
| Msa0480600 | Msa1436040 | 0.825964 | 3.516968e-54 | -8.615850e-47 |
| Msa0480600 | Msa1440600 | 0.815992 | 6.955615e-52 | -8.615850e-47 |
| Msa0480600 | Msa1451620 | -0.800180 | 1.626581e-48 | -8.615850e-47 |
| Msa0480600 | Msa1455390 | 0.998139 | 4.156778e-257 | -8.615850e-47 |
| Msa0480600 | Msa1458550 | 0.838498 | 2.774450e-57 | -8.615850e-47 |
| Msa0480600 | Msa1461250 | -0.807517 | 4.862179e-50 | -8.615850e-47 |
| Msa0258760 | Msa0480600 | 0.803637 | 3.169604e-49 | -8.615850e-47 |
| Msa0260810 | Msa0480600 | 0.816432 | 5.547435e-52 | -8.615850e-47 |
| Msa0266000 | Msa0480600 | -0.822521 | 2.265461e-53 | -8.615850e-47 |
| Msa0269280 | Msa0480600 | 0.810481 | 1.128508e-50 | -8.615850e-47 |
| Msa0269450 | Msa0480600 | 0.813271 | 2.784808e-51 | -8.615850e-47 |
| Msa0276920 | Msa0480600 | 0.806848 | 6.737917e-50 | -8.615850e-47 |
| Msa0296560 | Msa0480600 | 0.804732 | 1.875868e-49 | -8.615850e-47 |
| Msa0304290 | Msa0480600 | 0.800342 | 1.507788e-48 | -8.615850e-47 |
| Msa0304700 | Msa0480600 | 0.822431 | 2.377900e-53 | -8.615850e-47 |
| Msa0305890 | Msa0480600 | 0.800269 | 1.560306e-48 | -8.615850e-47 |
| Msa0323080 | Msa0480600 | 0.811210 | 7.844254e-51 | -8.615850e-47 |
| Msa0333720 | Msa0480600 | -0.809653 | 1.701437e-50 | -8.615850e-47 |
| Msa0335040 | Msa0480600 | 0.831125 | 1.993124e-55 | -8.615850e-47 |
| Msa0344830 | Msa0480600 | 0.826645 | 2.421464e-54 | -8.615850e-47 |
| Msa0344870 | Msa0480600 | 0.830938 | 2.215491e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480600 | MtrunA17_Chr3g0127331 | 98.765 | 162 | 2 | 0 | 1 | 162 | 1 | 162 | 5.16e-119 | 332 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGGTAAGGTTTCCATTT+TGG | 0.114718 | 3_3:-85906224 | None:intergenic |
| CTCCCCATCTCTCCTTAAAA+AGG | 0.245866 | 3_3:-85907384 | None:intergenic |
| CACTGTGAACTTTCACTATT+GGG | 0.252264 | 3_3:-85908247 | None:intergenic |
| CCACTGTGAACTTTCACTAT+TGG | 0.288552 | 3_3:-85908248 | None:intergenic |
| GTTATATCTTACTACAATAT+TGG | 0.321352 | 3_3:+85908374 | Msa0480600:three_prime_UTR |
| CTATAATCTAATCCCCAAAA+TGG | 0.329374 | 3_3:+85906210 | Msa0480600:exon |
| CACTCTATCTATCTGTCTTT+CGG | 0.341213 | 3_3:-85906074 | None:intergenic |
| AAAGGTAGCAACAGTTTCCT+TGG | 0.390750 | 3_3:-85906129 | None:intergenic |
| CAAAATGGAAACCTTACCTT+TGG | 0.392712 | 3_3:+85906225 | Msa0480600:exon |
| CTCCTCTTGGTTCAAAATCA+TGG | 0.393681 | 3_3:+85907428 | Msa0480600:CDS |
| GAGATCATGTCGAGGAATCT+TGG | 0.402090 | 3_3:+85908136 | Msa0480600:CDS |
| TAGAAGGAGGAAGCAGTTGT+TGG | 0.420420 | 3_3:+85906042 | None:intergenic |
| AATATATAATTTAATTATCA+AGG | 0.424029 | 3_3:-85908430 | None:intergenic |
| TGGCCTCGGACAATGCTCTA+TGG | 0.432233 | 3_3:+85907356 | Msa0480600:CDS |
| TTATATCACACGGCTGCGTT+TGG | 0.432650 | 3_3:-85908207 | None:intergenic |
| TAGAGTGTTAGATTAGAAAC+AGG | 0.436604 | 3_3:+85906090 | Msa0480600:five_prime_UTR |
| CATACAGATTTCCAAAGGTA+AGG | 0.450513 | 3_3:-85906236 | None:intergenic |
| ACTTTCACTATTGGGTTGAA+TGG | 0.462372 | 3_3:-85908239 | None:intergenic |
| GGTGAGGTACAACGATATCT+AGG | 0.477811 | 3_3:+85908029 | Msa0480600:CDS |
| AGTTCAGAAACAGACTTCAC+TGG | 0.488792 | 3_3:+85908092 | Msa0480600:CDS |
| GAAGTGGAAGCTCATGGCCT+CGG | 0.508465 | 3_3:+85907342 | Msa0480600:CDS |
| GGTTTGAAGATTGTTAGAGA+AGG | 0.530829 | 3_3:+85907981 | Msa0480600:CDS |
| TTGTTGAGAAACAGCAAGAT+GGG | 0.537051 | 3_3:-85906284 | None:intergenic |
| ATCATGGAAAGAAGTGTATG+AGG | 0.545115 | 3_3:+85907444 | Msa0480600:CDS |
| CATCTTGCTGTTTCTCAACA+AGG | 0.545411 | 3_3:+85906286 | Msa0480600:CDS |
| CAAGATCGATGCGATCGAGT+TGG | 0.561970 | 3_3:+85907469 | Msa0480600:CDS |
| ATTGGGTTGAATGGTAGAGA+TGG | 0.590103 | 3_3:-85908230 | None:intergenic |
| CTGTAGGAAGTGGAAGCTCA+TGG | 0.592096 | 3_3:+85907336 | Msa0480600:CDS |
| CTTGTTGAGAAACAGCAAGA+TGG | 0.595023 | 3_3:-85906285 | None:intergenic |
| ATCTTCATACAGATTTCCAA+AGG | 0.614774 | 3_3:-85906241 | None:intergenic |
| TTTAAGTTGTATTTCAGACA+AGG | 0.626907 | 3_3:+85908470 | Msa0480600:three_prime_UTR |
| GAGAAACAGCAAGATGGGTG+TGG | 0.636024 | 3_3:-85906279 | None:intergenic |
| GATATCGTTGTACCTCACCT+TGG | 0.640965 | 3_3:-85908025 | None:intergenic |
| CTATCTTGTTCACCAAGGTG+AGG | 0.666547 | 3_3:+85908013 | Msa0480600:CDS |
| GTAGAGATGGTTATATCACA+CGG | 0.677630 | 3_3:-85908217 | None:intergenic |
| TGACCATAGAGCATTGTCCG+AGG | 0.683112 | 3_3:-85907359 | None:intergenic |
| GCTGAAGAGAGATCATGTCG+AGG | 0.706201 | 3_3:+85908128 | Msa0480600:CDS |
| GACTACTATCTTGTTCACCA+AGG | 0.711703 | 3_3:+85908008 | Msa0480600:CDS |
| CCAATAGTGAAAGTTCACAG+TGG | 0.758241 | 3_3:+85908248 | Msa0480600:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATTAATAATAATTT+TGG | + | chr3_3:85907657-85907676 | Msa0480600:intron | 0.0% |
| !!! | AAAAAATTAACAAATTGTTT+TGG | - | chr3_3:85907123-85907142 | None:intergenic | 10.0% |
| !! | AATTGTATAACAAAATTTGT+TGG | - | chr3_3:85906708-85906727 | None:intergenic | 15.0% |
| !!! | AACAATAAAGATTGAATTTT+AGG | - | chr3_3:85906916-85906935 | None:intergenic | 15.0% |
| !! | AATTGAATCAATCATAATAT+TGG | + | chr3_3:85907022-85907041 | Msa0480600:intron | 15.0% |
| !!! | TTTTAGAAGGAAAAAAATAT+GGG | - | chr3_3:85907686-85907705 | None:intergenic | 15.0% |
| !!! | ATAATTTGTTATGTTGAATA+TGG | - | chr3_3:85907826-85907845 | None:intergenic | 15.0% |
| !!! | TTTTTAATTCTTCACAAAAT+AGG | + | chr3_3:85907958-85907977 | Msa0480600:intron | 15.0% |
| !!! | TTTTAATTCTTCACAAAATA+GGG | + | chr3_3:85907959-85907978 | Msa0480600:intron | 15.0% |
| !!! | ACAAAATTCTTTTTTTCATT+GGG | + | chr3_3:85908159-85908178 | Msa0480600:CDS | 15.0% |
| !! | CAAGAATATAAAAATGAAGA+TGG | - | chr3_3:85906342-85906361 | None:intergenic | 20.0% |
| !!! | ATTTGAAATTCATAAGTCAA+CGG | - | chr3_3:85906408-85906427 | None:intergenic | 20.0% |
| !! | TTATTGCTTCAAATTAAACT+AGG | - | chr3_3:85906752-85906771 | None:intergenic | 20.0% |
| !!! | TCAATCTTTATTGTTTTGAT+CGG | + | chr3_3:85906921-85906940 | Msa0480600:intron | 20.0% |
| !! | TTGACTGTAATGATATAAAA+AGG | - | chr3_3:85907004-85907023 | None:intergenic | 20.0% |
| !! | ATCAATCATAATATTGGATT+AGG | + | chr3_3:85907028-85907047 | Msa0480600:intron | 20.0% |
| !!! | TTGTCAAATATCTTTTTAGA+GGG | - | chr3_3:85907230-85907249 | None:intergenic | 20.0% |
| !!! | CTGAGTTTATTACATTATTT+TGG | + | chr3_3:85907280-85907299 | Msa0480600:intron | 20.0% |
| !! | AAAACAATTTGTCAAATTCA+AGG | - | chr3_3:85907311-85907330 | None:intergenic | 20.0% |
| !!! | GTTTTAGAAGGAAAAAAATA+TGG | - | chr3_3:85907687-85907706 | None:intergenic | 20.0% |
| !! | TTTAAGAGAACTTATAACAT+TGG | + | chr3_3:85907756-85907775 | Msa0480600:intron | 20.0% |
| !! | TTTAATTCTTCACAAAATAG+GGG | + | chr3_3:85907960-85907979 | Msa0480600:intron | 20.0% |
| !!! | GACAAAATTCTTTTTTTCAT+TGG | + | chr3_3:85908158-85908177 | Msa0480600:CDS | 20.0% |
| !!! | CAAAATTCTTTTTTTCATTG+GGG | + | chr3_3:85908160-85908179 | Msa0480600:CDS | 20.0% |
| !! | GTTATATCTTACTACAATAT+TGG | + | chr3_3:85908374-85908393 | Msa0480600:three_prime_UTR | 20.0% |
| !! | TATGTATGTATAAAAAACTG+TGG | + | chr3_3:85908400-85908419 | Msa0480600:three_prime_UTR | 20.0% |
| ! | GTTTCAAGAAAGAGAAAAAA+AGG | - | chr3_3:85906150-85906169 | None:intergenic | 25.0% |
| ! | AATAACAATATTTCAACCGA+TGG | - | chr3_3:85906443-85906462 | None:intergenic | 25.0% |
| ! | TTATTAGATCTGAATCTGTA+TGG | + | chr3_3:85906458-85906477 | Msa0480600:intron | 25.0% |
| ! | TGTTGGATATCATATGATAT+AGG | - | chr3_3:85906691-85906710 | None:intergenic | 25.0% |
| !! | ACTGTGATTTTATGATACAT+TGG | + | chr3_3:85906957-85906976 | Msa0480600:intron | 25.0% |
| !! | TTCCTTTTAATGTTACACAT+AGG | + | chr3_3:85907149-85907168 | Msa0480600:intron | 25.0% |
| ! | AACCTATGTGTAACATTAAA+AGG | - | chr3_3:85907154-85907173 | None:intergenic | 25.0% |
| !! | CTTGTCAAATATCTTTTTAG+AGG | - | chr3_3:85907231-85907250 | None:intergenic | 25.0% |
| ! | TTAAATGCCATGATTATTGA+AGG | + | chr3_3:85907567-85907586 | Msa0480600:intron | 25.0% |
| ! | AAAATCTCCTTCAATAATCA+TGG | - | chr3_3:85907577-85907596 | None:intergenic | 25.0% |
| !!! | AGCAATTATGTTGTTTTAGA+AGG | - | chr3_3:85907699-85907718 | None:intergenic | 25.0% |
| ! | ATCTAGGTTCAAGAAAAAAT+CGG | + | chr3_3:85908045-85908064 | Msa0480600:CDS | 25.0% |
| !!! | TTTAAGTTGTATTTCAGACA+AGG | + | chr3_3:85908470-85908489 | Msa0480600:three_prime_UTR | 25.0% |
| ! | TAGAGTGTTAGATTAGAAAC+AGG | + | chr3_3:85906090-85906109 | Msa0480600:five_prime_UTR | 30.0% |
| CTATAATCTAATCCCCAAAA+TGG | + | chr3_3:85906210-85906229 | Msa0480600:exon | 30.0% | |
| ! | AAAGGTAAGGTTTCCATTTT+GGG | - | chr3_3:85906226-85906245 | None:intergenic | 30.0% |
| ATCTTCATACAGATTTCCAA+AGG | - | chr3_3:85906244-85906263 | None:intergenic | 30.0% | |
| TCTTTATCAGAAAACAGTGT+TGG | + | chr3_3:85906562-85906581 | Msa0480600:intron | 30.0% | |
| !!! | TTTTGTTTTCTGCGAAGAAA+TGG | + | chr3_3:85906631-85906650 | Msa0480600:intron | 30.0% |
| AAATATGAATCAAGTCCATG+TGG | - | chr3_3:85906880-85906899 | None:intergenic | 30.0% | |
| ATAGGTTAAAACCGACTATT+TGG | + | chr3_3:85907167-85907186 | Msa0480600:intron | 30.0% | |
| AAAACCGACTATTTGGTATT+TGG | + | chr3_3:85907174-85907193 | Msa0480600:intron | 30.0% | |
| !! | CAAATTGTTTTACAGTCTGT+AGG | + | chr3_3:85907320-85907339 | Msa0480600:intron | 30.0% |
| ! | TCTATGGTCAAACCTTTTTA+AGG | + | chr3_3:85907372-85907391 | Msa0480600:CDS | 30.0% |
| !! | AAACCTTTTTAAGGAGAGAT+GGG | + | chr3_3:85907381-85907400 | Msa0480600:CDS | 30.0% |
| ! | TAATTTTCATGCCATCTCAA+GGG | - | chr3_3:85907640-85907659 | None:intergenic | 30.0% |
| ! | ATAATTTTCATGCCATCTCA+AGG | - | chr3_3:85907641-85907660 | None:intergenic | 30.0% |
| TTTCTGCACACTTATAACAT+TGG | + | chr3_3:85907721-85907740 | Msa0480600:intron | 30.0% | |
| AGAACTTATAACATTGGTGT+TGG | + | chr3_3:85907762-85907781 | Msa0480600:intron | 30.0% | |
| ATTATTGAACTCTGACACAA+AGG | + | chr3_3:85907927-85907946 | Msa0480600:intron | 30.0% | |
| TTATTGAACTCTGACACAAA+GGG | + | chr3_3:85907928-85907947 | Msa0480600:intron | 30.0% | |
| !!! | TCTTTTTTTCATTGGGGATT+TGG | + | chr3_3:85908166-85908185 | Msa0480600:CDS | 30.0% |
| CACTCTATCTATCTGTCTTT+CGG | - | chr3_3:85906077-85906096 | None:intergenic | 35.0% | |
| !!! | TTCCTTGGATTCTGTTTTTG+TGG | - | chr3_3:85906117-85906136 | None:intergenic | 35.0% |
| ! | AAGGTAAGGTTTCCATTTTG+GGG | - | chr3_3:85906225-85906244 | None:intergenic | 35.0% |
| ! | CAAAGGTAAGGTTTCCATTT+TGG | - | chr3_3:85906227-85906246 | None:intergenic | 35.0% |
| CAAAATGGAAACCTTACCTT+TGG | + | chr3_3:85906225-85906244 | Msa0480600:exon | 35.0% | |
| CATACAGATTTCCAAAGGTA+AGG | - | chr3_3:85906239-85906258 | None:intergenic | 35.0% | |
| TTGTTGAGAAACAGCAAGAT+GGG | - | chr3_3:85906287-85906306 | None:intergenic | 35.0% | |
| AAATCAGTTGCATGTTCCAT+CGG | + | chr3_3:85906424-85906443 | Msa0480600:intron | 35.0% | |
| ! | TTATCAGAAAACAGTGTTGG+TGG | + | chr3_3:85906565-85906584 | Msa0480600:intron | 35.0% |
| GGATTAACAATATGTGACAG+AGG | - | chr3_3:85906670-85906689 | None:intergenic | 35.0% | |
| ! | CTGTGTTTCTTTGAAAAGCA+TGG | - | chr3_3:85906815-85906834 | None:intergenic | 35.0% |
| GGTCAAATTCCAGATCATAA+TGG | - | chr3_3:85906849-85906868 | None:intergenic | 35.0% | |
| TTTGACCAAAATTTGCCACA+TGG | + | chr3_3:85906862-85906881 | Msa0480600:intron | 35.0% | |
| GTTGCCAAATACCAAATAGT+CGG | - | chr3_3:85907181-85907200 | None:intergenic | 35.0% | |
| ATTTGGCAACTGAGTGTTAA+CGG | + | chr3_3:85907191-85907210 | Msa0480600:intron | 35.0% | |
| !! | CAAACCTTTTTAAGGAGAGA+TGG | + | chr3_3:85907380-85907399 | Msa0480600:CDS | 35.0% |
| !! | AACCTTTTTAAGGAGAGATG+GGG | + | chr3_3:85907382-85907401 | Msa0480600:CDS | 35.0% |
| ! | TTCCATGATTTTGAACCAAG+AGG | - | chr3_3:85907433-85907452 | None:intergenic | 35.0% |
| ! | ATCATGGAAAGAAGTGTATG+AGG | + | chr3_3:85907444-85907463 | Msa0480600:CDS | 35.0% |
| ATAATTGCAAGCGTGTGATT+AGG | - | chr3_3:85907611-85907630 | None:intergenic | 35.0% | |
| ATTATTCTTGTCCCTTGAGA+TGG | + | chr3_3:85907626-85907645 | Msa0480600:intron | 35.0% | |
| CTAAAGCAAATCCAAGTAAG+AGG | - | chr3_3:85907791-85907810 | None:intergenic | 35.0% | |
| ! | ACAATAGAAAGTCTTGTGTG+TGG | + | chr3_3:85907899-85907918 | Msa0480600:intron | 35.0% |
| GGTTTGAAGATTGTTAGAGA+AGG | + | chr3_3:85907981-85908000 | Msa0480600:CDS | 35.0% | |
| GTAGAGATGGTTATATCACA+CGG | - | chr3_3:85908220-85908239 | None:intergenic | 35.0% | |
| !! | ACTTTCACTATTGGGTTGAA+TGG | - | chr3_3:85908242-85908261 | None:intergenic | 35.0% |
| CACTGTGAACTTTCACTATT+GGG | - | chr3_3:85908250-85908269 | None:intergenic | 35.0% | |
| GACCACAAAAACAGAATCCA+AGG | + | chr3_3:85906112-85906131 | Msa0480600:five_prime_UTR | 40.0% | |
| AAAGGTAGCAACAGTTTCCT+TGG | - | chr3_3:85906132-85906151 | None:intergenic | 40.0% | |
| CGTGCAACAAAAACAGTAAC+TGG | - | chr3_3:85906177-85906196 | None:intergenic | 40.0% | |
| CTTGTTGAGAAACAGCAAGA+TGG | - | chr3_3:85906288-85906307 | None:intergenic | 40.0% | |
| !! | CATCTTGCTGTTTCTCAACA+AGG | + | chr3_3:85906286-85906305 | Msa0480600:CDS | 40.0% |
| ! | GTGTTGGTGGAATTGAAAAC+AGG | + | chr3_3:85906578-85906597 | Msa0480600:intron | 40.0% |
| GGTTCACAGAACACAGTTAT+TGG | - | chr3_3:85906731-85906750 | None:intergenic | 40.0% | |
| AAACACACCGCTATGTTTCT+TGG | + | chr3_3:85906771-85906790 | Msa0480600:intron | 40.0% | |
| AACACACCGCTATGTTTCTT+GGG | + | chr3_3:85906772-85906791 | Msa0480600:intron | 40.0% | |
| ! | CAAGTCCATGTGGCAAATTT+TGG | - | chr3_3:85906870-85906889 | None:intergenic | 40.0% |
| GCAAATCAGCAAGACATATG+CGG | - | chr3_3:85907101-85907120 | None:intergenic | 40.0% | |
| ! | GTTTTACAGTCTGTAGGAAG+TGG | + | chr3_3:85907326-85907345 | Msa0480600:intron | 40.0% |
| CTCCTCTTGGTTCAAAATCA+TGG | + | chr3_3:85907428-85907447 | Msa0480600:CDS | 40.0% | |
| TTACTCTGCTGAGAGTAGTA+CGG | + | chr3_3:85907509-85907528 | Msa0480600:intron | 40.0% | |
| GACTACTATCTTGTTCACCA+AGG | + | chr3_3:85908008-85908027 | Msa0480600:CDS | 40.0% | |
| AAAAATCGGCGACAAGTATC+TGG | + | chr3_3:85908059-85908078 | Msa0480600:CDS | 40.0% | |
| AGTTCAGAAACAGACTTCAC+TGG | + | chr3_3:85908092-85908111 | Msa0480600:CDS | 40.0% | |
| !! | ATTGGGTTGAATGGTAGAGA+TGG | - | chr3_3:85908233-85908252 | None:intergenic | 40.0% |
| CCACTGTGAACTTTCACTAT+TGG | - | chr3_3:85908251-85908270 | None:intergenic | 40.0% | |
| CCAATAGTGAAAGTTCACAG+TGG | + | chr3_3:85908248-85908267 | Msa0480600:three_prime_UTR | 40.0% | |
| GCATGGTGAAAGTTAGAGTC+TGG | - | chr3_3:85906798-85906817 | None:intergenic | 45.0% | |
| ! | CCAGATCATAATGGAAGCTG+AGG | - | chr3_3:85906840-85906859 | None:intergenic | 45.0% |
| CCTCAGCTTCCATTATGATC+TGG | + | chr3_3:85906837-85906856 | Msa0480600:intron | 45.0% | |
| CTCCCCATCTCTCCTTAAAA+AGG | - | chr3_3:85907387-85907406 | None:intergenic | 45.0% | |
| !! | CTTTTTAAGGAGAGATGGGG+AGG | + | chr3_3:85907385-85907404 | Msa0480600:CDS | 45.0% |
| !!! | GCTGCTTTTTATGCTCCTCT+TGG | + | chr3_3:85907415-85907434 | Msa0480600:CDS | 45.0% |
| CTATCTTGTTCACCAAGGTG+AGG | + | chr3_3:85908013-85908032 | Msa0480600:CDS | 45.0% | |
| GATATCGTTGTACCTCACCT+TGG | - | chr3_3:85908028-85908047 | None:intergenic | 45.0% | |
| GGTGAGGTACAACGATATCT+AGG | + | chr3_3:85908029-85908048 | Msa0480600:CDS | 45.0% | |
| GAGATCATGTCGAGGAATCT+TGG | + | chr3_3:85908136-85908155 | Msa0480600:CDS | 45.0% | |
| TTATATCACACGGCTGCGTT+TGG | - | chr3_3:85908210-85908229 | None:intergenic | 45.0% | |
| !! | AATATATAATTTAATTATCA+AGG | - | chr3_3:85908433-85908452 | None:intergenic | 5.0% |
| GAGAAACAGCAAGATGGGTG+TGG | - | chr3_3:85906282-85906301 | None:intergenic | 50.0% | |
| GTCTGGCCCAAGAAACATAG+CGG | - | chr3_3:85906781-85906800 | None:intergenic | 50.0% | |
| CTGTAGGAAGTGGAAGCTCA+TGG | + | chr3_3:85907336-85907355 | Msa0480600:CDS | 50.0% | |
| !! | TGACCATAGAGCATTGTCCG+AGG | - | chr3_3:85907362-85907381 | None:intergenic | 50.0% |
| CAAGATCGATGCGATCGAGT+TGG | + | chr3_3:85907469-85907488 | Msa0480600:CDS | 50.0% | |
| !! | GGTGTTGGCTTCCTCTTACT+TGG | + | chr3_3:85907777-85907796 | Msa0480600:intron | 50.0% |
| GCTGAAGAGAGATCATGTCG+AGG | + | chr3_3:85908128-85908147 | Msa0480600:CDS | 50.0% | |
| GAAGTGGAAGCTCATGGCCT+CGG | + | chr3_3:85907342-85907361 | Msa0480600:CDS | 55.0% | |
| TGGCCTCGGACAATGCTCTA+TGG | + | chr3_3:85907356-85907375 | Msa0480600:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85906047 | 85908512 | 85906047 | ID=Msa0480600;Name=Msa0480600 |
| chr3_3 | mRNA | 85906047 | 85908512 | 85906047 | ID=Msa0480600-mRNA-1;Parent=Msa0480600;Name=Msa0480600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=182|1|1|1|1|1|3|283|162 |
| chr3_3 | exon | 85906047 | 85906307 | 85906047 | ID=Msa0480600-mRNA-1:exon:24772;Parent=Msa0480600-mRNA-1 |
| chr3_3 | exon | 85907335 | 85907494 | 85907335 | ID=Msa0480600-mRNA-1:exon:24773;Parent=Msa0480600-mRNA-1 |
| chr3_3 | exon | 85907980 | 85908512 | 85907980 | ID=Msa0480600-mRNA-1:exon:24774;Parent=Msa0480600-mRNA-1 |
| chr3_3 | five_prime_UTR | 85906047 | 85906228 | 85906047 | ID=Msa0480600-mRNA-1:five_prime_utr;Parent=Msa0480600-mRNA-1 |
| chr3_3 | CDS | 85906229 | 85906307 | 85906229 | ID=Msa0480600-mRNA-1:cds;Parent=Msa0480600-mRNA-1 |
| chr3_3 | CDS | 85907335 | 85907494 | 85907335 | ID=Msa0480600-mRNA-1:cds;Parent=Msa0480600-mRNA-1 |
| chr3_3 | CDS | 85907980 | 85908229 | 85907980 | ID=Msa0480600-mRNA-1:cds;Parent=Msa0480600-mRNA-1 |
| chr3_3 | three_prime_UTR | 85908230 | 85908512 | 85908230 | ID=Msa0480600-mRNA-1:three_prime_utr;Parent=Msa0480600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
