AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0659040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659040 MtrunA17_Chr8g0383291 95.167 538 14 4 1 535 1 529 0.0 1051
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0659040 AT2G21860.1 63.867 512 159 5 20 527 22 511 0.0 685

Find 129 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTTGGATCATTAATT+TGG 0.084716 4_3:-69274049 None:intergenic
TATTGCAAATAACTAAATTT+TGG 0.087334 4_3:-69274154 None:intergenic
AATTCAGAGTGTTACCATTT+TGG 0.198620 4_3:+69271033 Msa0659040:five_prime_UTR
ATTCACACATTCATCCAATT+TGG 0.214697 4_3:-69274062 None:intergenic
CACTATTTCATATGAGTCTT+TGG 0.227130 4_3:-69273082 None:intergenic
CTAGATTTGAAGAACAAATT+AGG 0.233092 4_3:+69272985 Msa0659040:CDS
TTGGTATGAACCGGTGTTTC+AGG 0.234337 4_3:+69273644 Msa0659040:CDS
GAAGTAAAGGGAAGCATATT+TGG 0.240241 4_3:+69273027 Msa0659040:CDS
CCCTCTCAACTCTGCTTCTT+GGG 0.260895 4_3:+69271345 Msa0659040:CDS
GCCCTCTCAACTCTGCTTCT+TGG 0.274661 4_3:+69271344 Msa0659040:CDS
GCATGGAGAAGAATAGTAAA+AGG 0.274747 4_3:-69271182 None:intergenic
AAGAATAGTAAAAGGGAAAA+AGG 0.282457 4_3:-69271174 None:intergenic
TTTGCAATAAGCTTGTTATC+AGG 0.304552 4_3:+69274168 Msa0659040:three_prime_UTR
TATTTCAGTGTATTAGATAA+TGG 0.312534 4_3:+69273744 Msa0659040:CDS
TCATGCATTGATCCTCCATT+AGG 0.313626 4_3:+69273993 Msa0659040:CDS
CAAACGAAGAGTCGGTTAAC+TGG 0.314699 4_3:+69272911 Msa0659040:CDS
TCCAAATTAATGATCCAAAT+TGG 0.322012 4_3:+69274048 Msa0659040:CDS
TTCGTCCTCTCTCTTTCATT+TGG 0.322166 4_3:-69273906 None:intergenic
TGGAGCTGGCGCGTTGTAGC+GGG 0.328165 4_3:+69273549 Msa0659040:CDS
GAGTTATTTCAAATGAGTTT+TGG 0.328583 4_3:+69273766 Msa0659040:CDS
GCTGCAGGGCAGTCTTATAC+TGG 0.330058 4_3:+69273852 Msa0659040:CDS
TACTAATCAATGCTTATATA+AGG 0.337300 4_3:+69273166 Msa0659040:CDS
TTCATACGAAAGTGCGAATC+TGG 0.340979 4_3:+69273365 Msa0659040:CDS
TTCTCCTCCTCCATACCATT+TGG 0.346423 4_3:-69273683 None:intergenic
CATGCATTGATCCTCCATTA+GGG 0.358125 4_3:+69273994 Msa0659040:CDS
TCAACCATTGGAGGCACATA+TGG 0.360449 4_3:-69273456 None:intergenic
TATGGAGGAGGAGAAAATAT+AGG 0.367865 4_3:+69273691 Msa0659040:CDS
TCATTTGGATATGCTCCATC+TGG 0.369299 4_3:-69273891 None:intergenic
GACGCAGTTCTGACGATATA+CGG 0.372251 4_3:+69273130 Msa0659040:CDS
GTTAAGAGAGGTAAGGTATA+TGG 0.378832 4_3:+69273714 Msa0659040:CDS
GATGATGGAGGAAAGCAATA+AGG 0.384790 4_3:-69271241 None:intergenic
GGAGGCACATATGGCTTAGT+AGG 0.394962 4_3:-69273447 None:intergenic
TGGGGTTTGTTCCACTATCA+TGG 0.398219 4_3:+69273819 Msa0659040:CDS
ATGGAGGAGGAGAAAATATA+GGG 0.404522 4_3:+69273692 Msa0659040:CDS
TGTAGCTAATGACCTTAGTT+GGG 0.414877 4_3:+69273800 Msa0659040:CDS
TCAGGTATTTAATTGCTTGT+TGG 0.415100 4_3:+69273263 Msa0659040:CDS
TAATTACATACTTGATCAAC+AGG 0.415438 4_3:-69273330 None:intergenic
TTCTATAGAGGAAAAGCAAA+AGG 0.423876 4_3:+69273615 Msa0659040:CDS
GTCTATGATGAATGTTGAAA+TGG 0.425350 4_3:+69274219 Msa0659040:three_prime_UTR
GTTGAAGAACTGCGGTCGTC+AGG 0.430709 4_3:+69273245 Msa0659040:CDS
ATTGCAGAAGATTTGTTTGT+TGG 0.430954 4_3:+69273507 Msa0659040:CDS
AATCGAATCATGTATATTCC+AGG 0.431762 4_3:+69274197 Msa0659040:three_prime_UTR
GAGATTCACAATGAAGTAAA+GGG 0.435424 4_3:+69273015 Msa0659040:CDS
GAACCCTCTGGAGTCCCTAA+TGG 0.441951 4_3:-69274008 None:intergenic
CATGGAGAAGAATAGTAAAA+GGG 0.442617 4_3:-69271181 None:intergenic
ATGGAGCTGGCGCGTTGTAG+CGG 0.444125 4_3:+69273548 Msa0659040:CDS
GAATGAATAAGAAACCAAAA+TGG 0.444706 4_3:-69271047 None:intergenic
ATGTAGCTAATGACCTTAGT+TGG 0.456001 4_3:+69273799 Msa0659040:CDS
CATGGAGCTGCTAAAGCTGC+AGG 0.462494 4_3:+69273837 Msa0659040:CDS
CAGCCTTCAGTAATTCTCTC+TGG 0.462625 4_3:-69272864 None:intergenic
CCTCCAATGGTTGAATTTCG+CGG 0.464187 4_3:+69273465 Msa0659040:CDS
CTTTAGCAGCTCCATGATAG+TGG 0.464240 4_3:-69273830 None:intergenic
TGAGATTCACAATGAAGTAA+AGG 0.466183 4_3:+69273014 Msa0659040:CDS
TGCCCGCGAAATTCAACCAT+TGG 0.472472 4_3:-69273468 None:intergenic
CTGTAACACGCAAAGCGAAA+AGG 0.472645 4_3:-69273391 None:intergenic
TTGCAATAAGCTTGTTATCA+GGG 0.481767 4_3:+69274169 Msa0659040:three_prime_UTR
CTCCAATGGTTGAATTTCGC+GGG 0.485968 4_3:+69273466 Msa0659040:CDS
CTGCAGGGCAGTCTTATACT+GGG 0.487163 4_3:+69273853 Msa0659040:CDS
GAATGAAAACTTGAACCCTC+TGG 0.494780 4_3:-69274020 None:intergenic
CATTTGAAGGCCAAATGGTA+TGG 0.506239 4_3:+69273673 Msa0659040:CDS
CCCAAGAAGCAGAGTTGAGA+GGG 0.506484 4_3:-69271345 None:intergenic
AGAGAGATTGAGAATGAGCA+TGG 0.506508 4_3:-69271199 None:intergenic
AGAAATGTGAAATCAAAGAG+TGG 0.510895 4_3:+69273946 Msa0659040:CDS
GCAGTACTTGTTAGTCCAGA+TGG 0.511090 4_3:+69273876 Msa0659040:CDS
CAGAAGATTTGTTTGTTGGT+TGG 0.512517 4_3:+69273511 Msa0659040:CDS
CAAGGGAATTGATCATATGC+TGG 0.512768 4_3:-69273579 None:intergenic
AGATTGAAATGGGTTGATGA+AGG 0.515244 4_3:+69272790 Msa0659040:CDS
CAATATCAGCTATTCTATAG+AGG 0.515759 4_3:+69273603 Msa0659040:CDS
TAGAGAGTTTGCAATGGAGC+TGG 0.516155 4_3:+69273535 Msa0659040:CDS
CAGAGAGAATTACTGAAGGC+TGG 0.524861 4_3:+69272865 Msa0659040:CDS
TGCAAACTGTAACCGAAGCA+TGG 0.534436 4_3:+69273103 Msa0659040:CDS
TCCACGGTTGTTGATGATGA+TGG 0.535345 4_3:-69271256 None:intergenic
AGTGGAACAAACCCCAACTA+AGG 0.536966 4_3:-69273812 None:intergenic
TTCAGTAATTCTCTCTGGAG+TGG 0.537115 4_3:-69272859 None:intergenic
AGAAAATATAGGGTTAAGAG+AGG 0.541135 4_3:+69273702 Msa0659040:CDS
GTGAGGATGGTGGCTATAGT+TGG 0.542421 4_3:+69271307 Msa0659040:CDS
TTTCGTATGAAGCGATGCAT+CGG 0.549436 4_3:-69273353 None:intergenic
TGGGAAGATGAAGTTGCAGT+TGG 0.559282 4_3:-69271087 None:intergenic
ATATAGGGTTAAGAGAGGTA+AGG 0.560870 4_3:+69273707 Msa0659040:CDS
TTCAACATTCATCATAGACC+TGG 0.562335 4_3:-69274215 None:intergenic
TCTATAGAGGAAAAGCAAAA+GGG 0.562818 4_3:+69273616 Msa0659040:CDS
GATTGAAATGGGTTGATGAA+GGG 0.563961 4_3:+69272791 Msa0659040:CDS
GTAGCTAATGACCTTAGTTG+GGG 0.568269 4_3:+69273801 Msa0659040:CDS
GGATGAGCCTCCGGTGAGGA+TGG 0.570432 4_3:+69271294 Msa0659040:CDS
AAGATGAAGTTGCAGTTGGA+AGG 0.572125 4_3:-69271083 None:intergenic
TGCAGGGCAGTCTTATACTG+GGG 0.572559 4_3:+69273854 Msa0659040:CDS
ACTGCGTCGATCCCATGCTT+CGG 0.573705 4_3:-69273115 None:intergenic
GGAGCTGGCGCGTTGTAGCG+GGG 0.580346 4_3:+69273550 Msa0659040:CDS
GAAATGTGAAATCAAAGAGT+GGG 0.580566 4_3:+69273947 Msa0659040:CDS
TGTGACGATGGATGAGCCTC+CGG 0.581185 4_3:+69271285 Msa0659040:CDS
ATGGTGGCTATAGTTGGCCA+TGG 0.581673 4_3:+69271313 Msa0659040:CDS
CGCTGTTACAAACGAAGAGT+CGG 0.585099 4_3:+69272903 Msa0659040:CDS
CCGCGAAATTCAACCATTGG+AGG 0.586866 4_3:-69273465 None:intergenic
GCAAACTGTAACCGAAGCAT+GGG 0.587392 4_3:+69273104 Msa0659040:CDS
ATGGAGCTGCTAAAGCTGCA+GGG 0.587852 4_3:+69273838 Msa0659040:CDS
AGGAAAGCAATAAGGAGTAG+TGG 0.591834 4_3:-69271233 None:intergenic
GAAAAGTAGGTTGCATAGCT+CGG 0.592376 4_3:+69270965 None:intergenic
GAGGCACATATGGCTTAGTA+GGG 0.597220 4_3:-69273446 None:intergenic
AAGGCCAAATGGTATGGAGG+AGG 0.599053 4_3:+69273679 Msa0659040:CDS
TAAGCCATATGTGCCTCCAA+TGG 0.599741 4_3:+69273452 Msa0659040:CDS
ACTATAGCCACCATCCTCAC+CGG 0.601762 4_3:-69271304 None:intergenic
TTGATCTCCCACGTTGACAA+TGG 0.605791 4_3:-69274264 None:intergenic
TCCCAAGAAGCAGAGTTGAG+AGG 0.610361 4_3:-69271346 None:intergenic
AACTGTATGTTGAAGAACTG+CGG 0.613073 4_3:+69273237 Msa0659040:CDS
TGAGAGGGCTGACAGCTCCA+TGG 0.617554 4_3:-69271330 None:intergenic
TGAGTTTGAAGCACATGTGT+GGG 0.620501 4_3:-69271106 None:intergenic
GATTTGAAGAACAAATTAGG+AGG 0.621101 4_3:+69272988 Msa0659040:CDS
CATCGTCACATCAGAGTCCA+CGG 0.621255 4_3:-69271272 None:intergenic
CCCTCTGGAGTCCCTAATGG+AGG 0.622618 4_3:-69274005 None:intergenic
GTTGGTTAGAGAGTTTGCAA+TGG 0.622715 4_3:+69273529 Msa0659040:CDS
CAATTTGACCATTGTCAACG+TGG 0.624072 4_3:+69274256 Msa0659040:three_prime_UTR
TTGACAATGGTCAAATTGAG+AGG 0.633237 4_3:-69274251 None:intergenic
TGAGCCTCCGGTGAGGATGG+TGG 0.634453 4_3:+69271297 Msa0659040:CDS
ATTAGATTGAATGCACTCGT+CGG 0.634851 4_3:-69272833 None:intergenic
TTGAAGGCCAAATGGTATGG+AGG 0.635847 4_3:+69273676 Msa0659040:CDS
TTGAGTTTGAAGCACATGTG+TGG 0.641740 4_3:-69271107 None:intergenic
AATTTGACCATTGTCAACGT+GGG 0.644321 4_3:+69274257 Msa0659040:three_prime_UTR
CATATCCAAATGAAAGAGAG+AGG 0.645957 4_3:+69273901 Msa0659040:CDS
AGAATAGCTGATATTGACAA+GGG 0.651578 4_3:-69273596 None:intergenic
TCCATCATCATCAACAACCG+TGG 0.662563 4_3:+69271255 Msa0659040:CDS
CCTCCATTAGGGACTCCAGA+GGG 0.662863 4_3:+69274005 Msa0659040:CDS
TAGAATAGCTGATATTGACA+AGG 0.664980 4_3:-69273597 None:intergenic
CGTGGACTCTGATGTGACGA+TGG 0.665005 4_3:+69271273 Msa0659040:CDS
TCCTCCATTAGGGACTCCAG+AGG 0.675079 4_3:+69274004 Msa0659040:CDS
ATAGCTCGGTAAGCAGCGAG+TGG 0.680601 4_3:+69270979 Msa0659040:five_prime_UTR
CGATGGATGAGCCTCCGGTG+AGG 0.688939 4_3:+69271290 Msa0659040:CDS
ACTCCAGAGAGAATTACTGA+AGG 0.689331 4_3:+69272861 Msa0659040:CDS
ATAGCCACCATCCTCACCGG+AGG 0.702930 4_3:-69271301 None:intergenic
ACGGTTGTTGATGATGATGG+AGG 0.719236 4_3:-69271253 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAAAAGAAATATGT+GGG - chr4_3:69272296-69272315 None:intergenic 10.0%
!! TTATATCCTTATATAAAAAC+AGG - chr4_3:69271440-69271459 None:intergenic 15.0%
!! ATTTCAATATAAAAATAGCT+TGG - chr4_3:69271497-69271516 None:intergenic 15.0%
!!! TTATTTTATTTATCCAAACA+GGG - chr4_3:69271570-69271589 None:intergenic 15.0%
!!! TTTATTTTATTTATCCAAAC+AGG - chr4_3:69271571-69271590 None:intergenic 15.0%
!!! GATCTTTTTTCTTTATTTAT+AGG + chr4_3:69272188-69272207 Msa0659040:intron 15.0%
!! TTATGATATAGTAGTTAATT+AGG - chr4_3:69272249-69272268 None:intergenic 15.0%
!! GATTAAATAAAAGAAATATG+TGG - chr4_3:69272297-69272316 None:intergenic 15.0%
!!! ATTGCAAATAACTAAATTTT+GGG - chr4_3:69274156-69274175 None:intergenic 15.0%
!!! TATTGCAAATAACTAAATTT+TGG - chr4_3:69274157-69274176 None:intergenic 15.0%
!!! CTATAACCTGTTTTTATATA+AGG + chr4_3:69271431-69271450 Msa0659040:intron 20.0%
!! ACAACTTATATGAAAACATT+TGG - chr4_3:69271596-69271615 None:intergenic 20.0%
!! TATAACTTTATTGAGTTTAC+GGG - chr4_3:69271755-69271774 None:intergenic 20.0%
!! GTATAACTTTATTGAGTTTA+CGG - chr4_3:69271756-69271775 None:intergenic 20.0%
!! ACTCAATAAAGTTATACATA+AGG + chr4_3:69271759-69271778 Msa0659040:intron 20.0%
!!! ATTGTTTTATCATTTCTATC+AGG + chr4_3:69272215-69272234 Msa0659040:intron 20.0%
!! ATATAGTAGTTAATTAGGTT+GGG - chr4_3:69272244-69272263 None:intergenic 20.0%
!!! TTATTTCTTTCAAATTTGCT+TGG + chr4_3:69272350-69272369 Msa0659040:intron 20.0%
!!! TTTGACTATTTTCTTACTTA+TGG + chr4_3:69272466-69272485 Msa0659040:intron 20.0%
!!! TTGACTATTTTCTTACTTAT+GGG + chr4_3:69272467-69272486 Msa0659040:intron 20.0%
!! AAGCATATTTGGAAAAATAT+TGG + chr4_3:69273038-69273057 Msa0659040:CDS 20.0%
!! AGCATATTTGGAAAAATATT+GGG + chr4_3:69273039-69273058 Msa0659040:CDS 20.0%
!! TACTAATCAATGCTTATATA+AGG + chr4_3:69273166-69273185 Msa0659040:CDS 20.0%
!! TATTTCAGTGTATTAGATAA+TGG + chr4_3:69273744-69273763 Msa0659040:CDS 20.0%
! GAATGAATAAGAAACCAAAA+TGG - chr4_3:69271050-69271069 None:intergenic 25.0%
! AAGAATAGTAAAAGGGAAAA+AGG - chr4_3:69271177-69271196 None:intergenic 25.0%
! ACATGAAACTCATTTGAATT+TGG - chr4_3:69271789-69271808 None:intergenic 25.0%
!! AAATTTATTGTAGTTTGTGG+TGG + chr4_3:69271870-69271889 Msa0659040:intron 25.0%
! TTACATACTTTAGCAAATCA+TGG + chr4_3:69271965-69271984 Msa0659040:intron 25.0%
! AGTTAATTCTCAAATCTTTG+AGG - chr4_3:69272080-69272099 None:intergenic 25.0%
! GATATAGTAGTTAATTAGGT+TGG - chr4_3:69272245-69272264 None:intergenic 25.0%
!!! AATGATTTTACTGGCTAAAA+CGG - chr4_3:69272272-69272291 None:intergenic 25.0%
!!! TTTAAGTTCTAAAGTGCTAA+TGG + chr4_3:69272540-69272559 Msa0659040:intron 25.0%
!!! AACAAGTTGAAATTAGCTTT+TGG - chr4_3:69272603-69272622 None:intergenic 25.0%
! GTTGTAAAGCTATCATTTAA+AGG + chr4_3:69272620-69272639 Msa0659040:intron 25.0%
! TGATTAAAGGGAACATTAAA+TGG - chr4_3:69272763-69272782 None:intergenic 25.0%
! ATTTAATGTTCCCTTTAATC+AGG + chr4_3:69272762-69272781 Msa0659040:intron 25.0%
!! AATCTTTTTGCCTGATTAAA+GGG - chr4_3:69272775-69272794 None:intergenic 25.0%
! CTAGATTTGAAGAACAAATT+AGG + chr4_3:69272985-69273004 Msa0659040:CDS 25.0%
! GCATATTTGGAAAAATATTG+GGG + chr4_3:69273040-69273059 Msa0659040:CDS 25.0%
! TAATTACATACTTGATCAAC+AGG - chr4_3:69273333-69273352 None:intergenic 25.0%
! GAAAAATAATTGTCTTGAGT+TGG + chr4_3:69273413-69273432 Msa0659040:CDS 25.0%
!! TTTCAGGTAAAAACATTTGA+AGG + chr4_3:69273660-69273679 Msa0659040:CDS 25.0%
!!! GAGTTATTTCAAATGAGTTT+TGG + chr4_3:69273766-69273785 Msa0659040:CDS 25.0%
! TCCAAATTAATGATCCAAAT+TGG + chr4_3:69274048-69274067 Msa0659040:CDS 25.0%
! TCCAATTTGGATCATTAATT+TGG - chr4_3:69274052-69274071 None:intergenic 25.0%
!! AATTCAGAGTGTTACCATTT+TGG + chr4_3:69271033-69271052 Msa0659040:five_prime_UTR 30.0%
CATGGAGAAGAATAGTAAAA+GGG - chr4_3:69271184-69271203 None:intergenic 30.0%
AGTAAGCTGAAAACAACTTA+TGG + chr4_3:69271653-69271672 Msa0659040:intron 30.0%
AACATATGCATATAGTGAGA+TGG + chr4_3:69271846-69271865 Msa0659040:intron 30.0%
ACATATGCATATAGTGAGAT+GGG + chr4_3:69271847-69271866 Msa0659040:intron 30.0%
GGGAAATTTATTGTAGTTTG+TGG + chr4_3:69271867-69271886 Msa0659040:intron 30.0%
GAAGGCAATAATATAATGTG+CGG + chr4_3:69271903-69271922 Msa0659040:intron 30.0%
GCGGATATAACATTAAAATC+TGG + chr4_3:69271922-69271941 Msa0659040:intron 30.0%
TTGGAATAGCATGATTCATA+AGG + chr4_3:69271994-69272013 Msa0659040:intron 30.0%
TCTACGTTAATAAACATCTC+TGG - chr4_3:69272166-69272185 None:intergenic 30.0%
GAGATGTTTATTAACGTAGA+AGG + chr4_3:69272166-69272185 Msa0659040:intron 30.0%
! TATGTGGGTAATGATTTTAC+TGG - chr4_3:69272281-69272300 None:intergenic 30.0%
!! TGTCATAATAGTTTTGCTAG+AGG + chr4_3:69272437-69272456 Msa0659040:intron 30.0%
!! GTCATAATAGTTTTGCTAGA+GGG + chr4_3:69272438-69272457 Msa0659040:intron 30.0%
ATTGAGAAGCTTATCCAAAA+AGG + chr4_3:69272696-69272715 Msa0659040:intron 30.0%
TCCAAAAAGGTTCATACTAA+CGG + chr4_3:69272709-69272728 Msa0659040:intron 30.0%
! CAATCTTTTTGCCTGATTAA+AGG - chr4_3:69272776-69272795 None:intergenic 30.0%
ATCAGGCAAAAAGATTGAAA+TGG + chr4_3:69272779-69272798 Msa0659040:intron 30.0%
TCAGGCAAAAAGATTGAAAT+GGG + chr4_3:69272780-69272799 Msa0659040:intron 30.0%
GATTTGAAGAACAAATTAGG+AGG + chr4_3:69272988-69273007 Msa0659040:CDS 30.0%
TGAGATTCACAATGAAGTAA+AGG + chr4_3:69273014-69273033 Msa0659040:CDS 30.0%
GAGATTCACAATGAAGTAAA+GGG + chr4_3:69273015-69273034 Msa0659040:CDS 30.0%
!!! GTCTTTGGTTTTATCTAACT+CGG - chr4_3:69273070-69273089 None:intergenic 30.0%
CACTATTTCATATGAGTCTT+TGG - chr4_3:69273085-69273104 None:intergenic 30.0%
!! AAGTTTTTCAATACTGGAAC+TGG - chr4_3:69273192-69273211 None:intergenic 30.0%
ATTGAAAAACTTGAGAGCAA+AGG + chr4_3:69273200-69273219 Msa0659040:CDS 30.0%
TTGAAAAACTTGAGAGCAAA+GGG + chr4_3:69273201-69273220 Msa0659040:CDS 30.0%
TCAGGTATTTAATTGCTTGT+TGG + chr4_3:69273263-69273282 Msa0659040:CDS 30.0%
! TGAAGAGCTTTTCTACAATT+AGG - chr4_3:69273291-69273310 None:intergenic 30.0%
! ATTGCAGAAGATTTGTTTGT+TGG + chr4_3:69273507-69273526 Msa0659040:CDS 30.0%
AGAATAGCTGATATTGACAA+GGG - chr4_3:69273599-69273618 None:intergenic 30.0%
TAGAATAGCTGATATTGACA+AGG - chr4_3:69273600-69273619 None:intergenic 30.0%
CAATATCAGCTATTCTATAG+AGG + chr4_3:69273603-69273622 Msa0659040:CDS 30.0%
TTCTATAGAGGAAAAGCAAA+AGG + chr4_3:69273615-69273634 Msa0659040:CDS 30.0%
TCTATAGAGGAAAAGCAAAA+GGG + chr4_3:69273616-69273635 Msa0659040:CDS 30.0%
!! AATGTTTTTACCTGAAACAC+CGG - chr4_3:69273657-69273676 None:intergenic 30.0%
AAAAACATTTGAAGGCCAAA+TGG + chr4_3:69273668-69273687 Msa0659040:CDS 30.0%
AGAAAATATAGGGTTAAGAG+AGG + chr4_3:69273702-69273721 Msa0659040:CDS 30.0%
!!! AAATGAGTTTTGGACAATTG+TGG + chr4_3:69273776-69273795 Msa0659040:CDS 30.0%
AGAAATGTGAAATCAAAGAG+TGG + chr4_3:69273946-69273965 Msa0659040:CDS 30.0%
GAAATGTGAAATCAAAGAGT+GGG + chr4_3:69273947-69273966 Msa0659040:CDS 30.0%
ATTCACACATTCATCCAATT+TGG - chr4_3:69274065-69274084 None:intergenic 30.0%
!! TTTGCAATAAGCTTGTTATC+AGG + chr4_3:69274168-69274187 Msa0659040:three_prime_UTR 30.0%
!! TTGCAATAAGCTTGTTATCA+GGG + chr4_3:69274169-69274188 Msa0659040:three_prime_UTR 30.0%
AATCGAATCATGTATATTCC+AGG + chr4_3:69274197-69274216 Msa0659040:three_prime_UTR 30.0%
GTCTATGATGAATGTTGAAA+TGG + chr4_3:69274219-69274238 Msa0659040:three_prime_UTR 30.0%
GCATGGAGAAGAATAGTAAA+AGG - chr4_3:69271185-69271204 None:intergenic 35.0%
! TTGAGTTTACGGGTATGTTT+TGG - chr4_3:69271745-69271764 None:intergenic 35.0%
!! GTAATCCAAGAGTGCTATTT+AGG + chr4_3:69271818-69271837 Msa0659040:intron 35.0%
! TAGCAAATCATGGATTGTGT+TGG + chr4_3:69271975-69271994 Msa0659040:intron 35.0%
CATGATTCATAAGGAAACAC+AGG + chr4_3:69272003-69272022 Msa0659040:intron 35.0%
AAAATCCAAAGACATGTTGC+AGG - chr4_3:69272137-69272156 None:intergenic 35.0%
! TCCGTTAGTATGAACCTTTT+TGG - chr4_3:69272713-69272732 None:intergenic 35.0%
!! AGATTGAAATGGGTTGATGA+AGG + chr4_3:69272790-69272809 Msa0659040:CDS 35.0%
!! GATTGAAATGGGTTGATGAA+GGG + chr4_3:69272791-69272810 Msa0659040:CDS 35.0%
ATTAGATTGAATGCACTCGT+CGG - chr4_3:69272836-69272855 None:intergenic 35.0%
! GAAGTAAAGGGAAGCATATT+TGG + chr4_3:69273027-69273046 Msa0659040:CDS 35.0%
!! GCTCTCAAGTTTTTCAATAC+TGG - chr4_3:69273198-69273217 None:intergenic 35.0%
AACTGTATGTTGAAGAACTG+CGG + chr4_3:69273237-69273256 Msa0659040:CDS 35.0%
! CAGAAGATTTGTTTGTTGGT+TGG + chr4_3:69273511-69273530 Msa0659040:CDS 35.0%
! GAAAAGCAAAAGGGTCTTTT+TGG + chr4_3:69273625-69273644 Msa0659040:CDS 35.0%
TATGGAGGAGGAGAAAATAT+AGG + chr4_3:69273691-69273710 Msa0659040:CDS 35.0%
ATGGAGGAGGAGAAAATATA+GGG + chr4_3:69273692-69273711 Msa0659040:CDS 35.0%
ATATAGGGTTAAGAGAGGTA+AGG + chr4_3:69273707-69273726 Msa0659040:CDS 35.0%
GTTAAGAGAGGTAAGGTATA+TGG + chr4_3:69273714-69273733 Msa0659040:CDS 35.0%
ATGTAGCTAATGACCTTAGT+TGG + chr4_3:69273799-69273818 Msa0659040:CDS 35.0%
TGTAGCTAATGACCTTAGTT+GGG + chr4_3:69273800-69273819 Msa0659040:CDS 35.0%
CATATCCAAATGAAAGAGAG+AGG + chr4_3:69273901-69273920 Msa0659040:CDS 35.0%
TTCAACATTCATCATAGACC+TGG - chr4_3:69274218-69274237 None:intergenic 35.0%
TTGACAATGGTCAAATTGAG+AGG - chr4_3:69274254-69274273 None:intergenic 35.0%
AAGATGAAGTTGCAGTTGGA+AGG - chr4_3:69271086-69271105 None:intergenic 40.0%
! TGAGTTTGAAGCACATGTGT+GGG - chr4_3:69271109-69271128 None:intergenic 40.0%
! TTGAGTTTGAAGCACATGTG+TGG - chr4_3:69271110-69271129 None:intergenic 40.0%
AGAGAGATTGAGAATGAGCA+TGG - chr4_3:69271202-69271221 None:intergenic 40.0%
AGGAAAGCAATAAGGAGTAG+TGG - chr4_3:69271236-69271255 None:intergenic 40.0%
!! GATGATGGAGGAAAGCAATA+AGG - chr4_3:69271244-69271263 None:intergenic 40.0%
TCTATACTGTAGACCCTGTT+TGG + chr4_3:69271554-69271573 Msa0659040:intron 40.0%
ACTCTCCTAAATAGCACTCT+TGG - chr4_3:69271826-69271845 None:intergenic 40.0%
! TTCAGTAATTCTCTCTGGAG+TGG - chr4_3:69272862-69272881 None:intergenic 40.0%
ACTCCAGAGAGAATTACTGA+AGG + chr4_3:69272861-69272880 Msa0659040:CDS 40.0%
TTTCGTATGAAGCGATGCAT+CGG - chr4_3:69273356-69273375 None:intergenic 40.0%
! TTCATACGAAAGTGCGAATC+TGG + chr4_3:69273365-69273384 Msa0659040:CDS 40.0%
GTTGGTTAGAGAGTTTGCAA+TGG + chr4_3:69273529-69273548 Msa0659040:CDS 40.0%
CAAGGGAATTGATCATATGC+TGG - chr4_3:69273582-69273601 None:intergenic 40.0%
!! AGGGTCTTTTTGGTATGAAC+CGG + chr4_3:69273635-69273654 Msa0659040:CDS 40.0%
CATTTGAAGGCCAAATGGTA+TGG + chr4_3:69273673-69273692 Msa0659040:CDS 40.0%
GTAGCTAATGACCTTAGTTG+GGG + chr4_3:69273801-69273820 Msa0659040:CDS 40.0%
TCATTTGGATATGCTCCATC+TGG - chr4_3:69273894-69273913 None:intergenic 40.0%
TTCGTCCTCTCTCTTTCATT+TGG - chr4_3:69273909-69273928 None:intergenic 40.0%
! TCATGCATTGATCCTCCATT+AGG + chr4_3:69273993-69274012 Msa0659040:CDS 40.0%
! CATGCATTGATCCTCCATTA+GGG + chr4_3:69273994-69274013 Msa0659040:CDS 40.0%
GAATGAAAACTTGAACCCTC+TGG - chr4_3:69274023-69274042 None:intergenic 40.0%
TGGGAAGATGAAGTTGCAGT+TGG - chr4_3:69271090-69271109 None:intergenic 45.0%
!! ACGGTTGTTGATGATGATGG+AGG - chr4_3:69271256-69271275 None:intergenic 45.0%
TCCATCATCATCAACAACCG+TGG + chr4_3:69271255-69271274 Msa0659040:CDS 45.0%
!! TCCACGGTTGTTGATGATGA+TGG - chr4_3:69271259-69271278 None:intergenic 45.0%
! TGTGGTGGAGAAGAAAGAGA+AGG + chr4_3:69271885-69271904 Msa0659040:intron 45.0%
TGCAACCTGCAACATGTCTT+TGG + chr4_3:69272129-69272148 Msa0659040:intron 45.0%
! AATTTGCTTGGACAGCATGC+AGG + chr4_3:69272362-69272381 Msa0659040:intron 45.0%
CAGCCTTCAGTAATTCTCTC+TGG - chr4_3:69272867-69272886 None:intergenic 45.0%
CAGAGAGAATTACTGAAGGC+TGG + chr4_3:69272865-69272884 Msa0659040:CDS 45.0%
CGCTGTTACAAACGAAGAGT+CGG + chr4_3:69272903-69272922 Msa0659040:CDS 45.0%
CAAACGAAGAGTCGGTTAAC+TGG + chr4_3:69272911-69272930 Msa0659040:CDS 45.0%
TGCAAACTGTAACCGAAGCA+TGG + chr4_3:69273103-69273122 Msa0659040:CDS 45.0%
GCAAACTGTAACCGAAGCAT+GGG + chr4_3:69273104-69273123 Msa0659040:CDS 45.0%
! GACGCAGTTCTGACGATATA+CGG + chr4_3:69273130-69273149 Msa0659040:CDS 45.0%
CTGTAACACGCAAAGCGAAA+AGG - chr4_3:69273394-69273413 None:intergenic 45.0%
GAGGCACATATGGCTTAGTA+GGG - chr4_3:69273449-69273468 None:intergenic 45.0%
TAAGCCATATGTGCCTCCAA+TGG + chr4_3:69273452-69273471 Msa0659040:CDS 45.0%
! TCAACCATTGGAGGCACATA+TGG - chr4_3:69273459-69273478 None:intergenic 45.0%
CCTCCAATGGTTGAATTTCG+CGG + chr4_3:69273465-69273484 Msa0659040:CDS 45.0%
CTCCAATGGTTGAATTTCGC+GGG + chr4_3:69273466-69273485 Msa0659040:CDS 45.0%
TAGAGAGTTTGCAATGGAGC+TGG + chr4_3:69273535-69273554 Msa0659040:CDS 45.0%
TTGGTATGAACCGGTGTTTC+AGG + chr4_3:69273644-69273663 Msa0659040:CDS 45.0%
TTGAAGGCCAAATGGTATGG+AGG + chr4_3:69273676-69273695 Msa0659040:CDS 45.0%
TTCTCCTCCTCCATACCATT+TGG - chr4_3:69273686-69273705 None:intergenic 45.0%
AGTGGAACAAACCCCAACTA+AGG - chr4_3:69273815-69273834 None:intergenic 45.0%
! TGGGGTTTGTTCCACTATCA+TGG + chr4_3:69273819-69273838 Msa0659040:CDS 45.0%
CTTTAGCAGCTCCATGATAG+TGG - chr4_3:69273833-69273852 None:intergenic 45.0%
! GCAGTACTTGTTAGTCCAGA+TGG + chr4_3:69273876-69273895 Msa0659040:CDS 45.0%
CATCGTCACATCAGAGTCCA+CGG - chr4_3:69271275-69271294 None:intergenic 50.0%
ACTATAGCCACCATCCTCAC+CGG - chr4_3:69271307-69271326 None:intergenic 50.0%
! GTGAGGATGGTGGCTATAGT+TGG + chr4_3:69271307-69271326 Msa0659040:CDS 50.0%
ATGGTGGCTATAGTTGGCCA+TGG + chr4_3:69271313-69271332 Msa0659040:CDS 50.0%
CCCAAGAAGCAGAGTTGAGA+GGG - chr4_3:69271348-69271367 None:intergenic 50.0%
CCCTCTCAACTCTGCTTCTT+GGG + chr4_3:69271345-69271364 Msa0659040:CDS 50.0%
TCCCAAGAAGCAGAGTTGAG+AGG - chr4_3:69271349-69271368 None:intergenic 50.0%
! GGAGGCACATATGGCTTAGT+AGG - chr4_3:69273450-69273469 None:intergenic 50.0%
CCGCGAAATTCAACCATTGG+AGG - chr4_3:69273468-69273487 None:intergenic 50.0%
TGCCCGCGAAATTCAACCAT+TGG - chr4_3:69273471-69273490 None:intergenic 50.0%
AAGGCCAAATGGTATGGAGG+AGG + chr4_3:69273679-69273698 Msa0659040:CDS 50.0%
ATGGAGCTGCTAAAGCTGCA+GGG + chr4_3:69273838-69273857 Msa0659040:CDS 50.0%
! CTGCAGGGCAGTCTTATACT+GGG + chr4_3:69273853-69273872 Msa0659040:CDS 50.0%
! TGCAGGGCAGTCTTATACTG+GGG + chr4_3:69273854-69273873 Msa0659040:CDS 50.0%
ATAGCTCGGTAAGCAGCGAG+TGG + chr4_3:69270979-69270998 Msa0659040:five_prime_UTR 55.0%
CGTGGACTCTGATGTGACGA+TGG + chr4_3:69271273-69271292 Msa0659040:CDS 55.0%
TGTGACGATGGATGAGCCTC+CGG + chr4_3:69271285-69271304 Msa0659040:CDS 55.0%
GCCCTCTCAACTCTGCTTCT+TGG + chr4_3:69271344-69271363 Msa0659040:CDS 55.0%
! ACTGCGTCGATCCCATGCTT+CGG - chr4_3:69273118-69273137 None:intergenic 55.0%
GTTGAAGAACTGCGGTCGTC+AGG + chr4_3:69273245-69273264 Msa0659040:CDS 55.0%
CATGGAGCTGCTAAAGCTGC+AGG + chr4_3:69273837-69273856 Msa0659040:CDS 55.0%
! GCTGCAGGGCAGTCTTATAC+TGG + chr4_3:69273852-69273871 Msa0659040:CDS 55.0%
TCCTCCATTAGGGACTCCAG+AGG + chr4_3:69274004-69274023 Msa0659040:CDS 55.0%
CCTCCATTAGGGACTCCAGA+GGG + chr4_3:69274005-69274024 Msa0659040:CDS 55.0%
!! GAACCCTCTGGAGTCCCTAA+TGG - chr4_3:69274011-69274030 None:intergenic 55.0%
ATAGCCACCATCCTCACCGG+AGG - chr4_3:69271304-69271323 None:intergenic 60.0%
TGAGAGGGCTGACAGCTCCA+TGG - chr4_3:69271333-69271352 None:intergenic 60.0%
ATGGAGCTGGCGCGTTGTAG+CGG + chr4_3:69273548-69273567 Msa0659040:CDS 60.0%
!! CCCTCTGGAGTCCCTAATGG+AGG - chr4_3:69274008-69274027 None:intergenic 60.0%
CGATGGATGAGCCTCCGGTG+AGG + chr4_3:69271290-69271309 Msa0659040:CDS 65.0%
GGATGAGCCTCCGGTGAGGA+TGG + chr4_3:69271294-69271313 Msa0659040:CDS 65.0%
TGAGCCTCCGGTGAGGATGG+TGG + chr4_3:69271297-69271316 Msa0659040:CDS 65.0%
TGGAGCTGGCGCGTTGTAGC+GGG + chr4_3:69273549-69273568 Msa0659040:CDS 65.0%
GGAGCTGGCGCGTTGTAGCG+GGG + chr4_3:69273550-69273569 Msa0659040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 69270973 69274278 69270973 ID=Msa0659040;Name=Msa0659040
chr4_3 mRNA 69270973 69274278 69270973 ID=Msa0659040-mRNA-1;Parent=Msa0659040;Name=Msa0659040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=106|1|1|1|1|1|2|196|535
chr4_3 exon 69270973 69271387 69270973 ID=Msa0659040-mRNA-1:exon:20249;Parent=Msa0659040-mRNA-1
chr4_3 exon 69272784 69274278 69272784 ID=Msa0659040-mRNA-1:exon:20250;Parent=Msa0659040-mRNA-1
chr4_3 five_prime_UTR 69270973 69271078 69270973 ID=Msa0659040-mRNA-1:five_prime_utr;Parent=Msa0659040-mRNA-1
chr4_3 CDS 69271079 69271387 69271079 ID=Msa0659040-mRNA-1:cds;Parent=Msa0659040-mRNA-1
chr4_3 CDS 69272784 69274082 69272784 ID=Msa0659040-mRNA-1:cds;Parent=Msa0659040-mRNA-1
chr4_3 three_prime_UTR 69274083 69274278 69274083 ID=Msa0659040-mRNA-1:three_prime_utr;Parent=Msa0659040-mRNA-1
Gene Sequence

>Msa0659040

ATGTCCTTCCAACTGCAACTTCATCTTCCCACACATGTGCTTCAAACTCAAACAAATAATCGTTTCTATGCTCAACACTACTTTCTCTCTTCTAACCTTTTTCCCTTTTACTATTCTTCTCCATGCTCATTCTCAATCTCTCTTTCTTCACACACCACTACTCCTTATTGCTTTCCTCCATCATCATCAACAACCGTGGACTCTGATGTGACGATGGATGAGCCTCCGGTGAGGATGGTGGCTATAGTTGGCCATGGAGCTGTCAGCCCTCTCAACTCTGCTTCTTGGGAACAAGTCATGCTTCATACTGCAAAAAGATTGAAATGGGTTGATGAAGGGTATGAACTTCTTGTATTTACCGACGAGTGCATTCAATCTAATGAACCACTCCAGAGAGAATTACTGAAGGCTGGTATATTAGTGATTGTCGCTGTTACAAACGAAGAGTCGGTTAACTGGATTAAAATCAGCAGCAAAACTATTGAAAATGTAATATGCTTTGACTCTTCACTAGATTTGAAGAACAAATTAGGAGGCTATGAGATTCACAATGAAGTAAAGGGAAGCATATTTGGAAAAATATTGGGGAGTTCCGAGTTAGATAAAACCAAAGACTCATATGAAATAGTGCAAACTGTAACCGAAGCATGGGATCGACGCAGTTCTGACGATATACGGTTCTGTTTGCTGTTACTAATCAATGCTTATATAAGGCCAGTTCCAGTATTGAAAAACTTGAGAGCAAAGGGTTTTTCAACTTTAAACTGTATGTTGAAGAACTGCGGTCGTCAGGTATTTAATTGCTTGTTGGATCCTAATTGTAGAAAAGCTCTTCAATGTCTGAATAAGTGTAGTCCTGTTGATCAAGTATGTAATTACCGATGCATCGCTTCATACGAAAGTGCGAATCTGGAAGCCTTTTCGCTTTGCGTGTTACAGAAAAATAATTGTCTTGAGTTGGAAGCAGAAGTCCCTACTAAGCCATATGTGCCTCCAATGGTTGAATTTCGCGGGCAGAACTTGAGTCATGAAATTGCAGAAGATTTGTTTGTTGGTTGGTTAGAGAGTTTGCAATGGAGCTGGCGCGTTGTAGCGGGGCAGAATCCAGCATATGATCAATTCCCTTGTCAATATCAGCTATTCTATAGAGGAAAAGCAAAAGGGTCTTTTTGGTATGAACCGGTGTTTCAGGTAAAAACATTTGAAGGCCAAATGGTATGGAGGAGGAGAAAATATAGGGTTAAGAGAGGTAAGGTATATGGCACATTCTATTTCAGTGTATTAGATAATGGAGTTATTTCAAATGAGTTTTGGACAATTGTGGATGTAGCTAATGACCTTAGTTGGGGTTTGTTCCACTATCATGGAGCTGCTAAAGCTGCAGGGCAGTCTTATACTGGGGCAGTACTTGTTAGTCCAGATGGAGCATATCCAAATGAAAGAGAGAGGACGAAAATTGTTGCTGCACTAGAGAAATGTGAAATCAAAGAGTGGGAGCTTTTCTTTGTTGACAATTGTTCATGCATTGATCCTCCATTAGGGACTCCAGAGGGTTCAAGTTTTCATTCTGTAGTCCAAATTAATGATCCAAATTGGATGAATGTGTGA

Protein sequence

>Msa0659040

MSFQLQLHLPTHVLQTQTNNRFYAQHYFLSSNLFPFYYSSPCSFSISLSSHTTTPYCFPPSSSTTVDSDVTMDEPPVRMVAIVGHGAVSPLNSASWEQVMLHTAKRLKWVDEGYELLVFTDECIQSNEPLQRELLKAGILVIVAVTNEESVNWIKISSKTIENVICFDSSLDLKNKLGGYEIHNEVKGSIFGKILGSSELDKTKDSYEIVQTVTEAWDRRSSDDIRFCLLLLINAYIRPVPVLKNLRAKGFSTLNCMLKNCGRQVFNCLLDPNCRKALQCLNKCSPVDQVCNYRCIASYESANLEAFSLCVLQKNNCLELEAEVPTKPYVPPMVEFRGQNLSHEIAEDLFVGWLESLQWSWRVVAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVFQVKTFEGQMVWRRRKYRVKRGKVYGTFYFSVLDNGVISNEFWTIVDVANDLSWGLFHYHGAAKAAGQSYTGAVLVSPDGAYPNERERTKIVAALEKCEIKEWELFFVDNCSCIDPPLGTPEGSSFHSVVQINDPNWMNV*