AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1281300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281300 MtrunA17_Chr8g0351881 91.395 337 23 4 1 334 1 334 0.0 597
Msa1281300 MtrunA17_Chr3g0087771 49.176 364 105 15 18 334 10 340 8.22e-87 266
Msa1281300 MtrunA17_Chr1g0174271 32.727 330 178 10 28 334 8 316 4.34e-26 107
Msa1281300 MtrunA17_Chr2g0329041 31.436 369 161 15 32 334 8 350 1.22e-21 94.7
Msa1281300 MtrunA17_Chr4g0032951 35.294 204 97 11 155 334 181 373 1.29e-17 83.2
Msa1281300 MtrunA17_Chr7g0258181 61.667 60 23 0 275 334 202 261 1.18e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281300 AT2G42280.1 31.707 328 146 14 40 334 15 297 5.15e-23 98.6
Msa1281300 AT2G42280.3 31.707 328 146 14 40 334 15 297 6.54e-23 98.2
Msa1281300 AT2G42280.2 31.804 327 145 14 40 333 15 296 7.42e-23 97.1
Msa1281300 AT1G05805.1 29.664 327 160 14 36 334 17 301 1.02e-14 74.7
Msa1281300 AT2G43140.2 34.158 202 95 6 147 334 72 249 2.79e-13 70.1
Msa1281300 AT1G51140.1 27.744 328 192 13 32 334 15 322 4.71e-13 69.7
Msa1281300 AT2G43140.1 36.641 131 58 4 205 334 46 152 1.40e-12 66.6

Find 57 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAAATGGATTCAAAATT+TGG 0.143373 8_3:-20723841 Msa1281300:CDS
AGTTGCCAGAATGTAGATTT+TGG 0.208118 8_3:-20721253 Msa1281300:intron
ACCCTCTCTGCAATGCTTCT+AGG 0.208569 8_3:+20721094 None:intergenic
TATTGTATTCCATGTGAAAA+AGG 0.235273 8_3:+20723580 None:intergenic
ACCACTATCAACCGAATAAT+TGG 0.239497 8_3:+20723393 None:intergenic
GGATTTCCAAATGGTTCTTT+AGG 0.260650 8_3:-20723499 Msa1281300:CDS
CAATACAATGATTACTCTTA+TGG 0.263413 8_3:-20723562 Msa1281300:CDS
CAATTTGCTTGAAGAGCTTC+AGG 0.284637 8_3:+20721971 None:intergenic
AGCATTGCAGAGAGGGTAAA+AGG 0.304991 8_3:-20721088 Msa1281300:CDS
AGAGAGGTAGGAAGTGTAAA+TGG 0.308528 8_3:-20722091 Msa1281300:intron
TTCTTCCAAGATGGCTACTA+TGG 0.309052 8_3:-20721185 Msa1281300:CDS
GCGTTAAGCCGGAATTGTTT+TGG 0.328492 8_3:+20723791 None:intergenic
GTGAGTGGCAAAGCCTCTTT+TGG 0.336425 8_3:+20721117 None:intergenic
TCCAATTATTCGGTTGATAG+TGG 0.369287 8_3:-20723394 Msa1281300:intron
CCCTCTCTGCAATGCTTCTA+GGG 0.373214 8_3:+20721095 None:intergenic
CTTCTCCATAGTAGCCATCT+TGG 0.374024 8_3:+20721180 None:intergenic
ACTACATCATCTAGTGGATA+TGG 0.382484 8_3:-20722061 Msa1281300:CDS
CATTGTCTCCAAAACAATTC+CGG 0.388810 8_3:-20723799 Msa1281300:CDS
TCCCTCTACAAGTTCAGAAA+TGG 0.398455 8_3:-20723656 Msa1281300:CDS
CACTGACAAAGATTCAGAAT+TGG 0.412608 8_3:+20723621 None:intergenic
AGAAACATGGGAAATGATAA+TGG 0.418925 8_3:-20721938 Msa1281300:CDS
TTCAAATGCTTTGGAAAGTC+AGG 0.424743 8_3:-20721804 Msa1281300:intron
TCAACACCTAAAGAACCATT+TGG 0.425199 8_3:+20723493 None:intergenic
AATGGTTCTTTAGGTGTTGA+AGG 0.428511 8_3:-20723490 Msa1281300:CDS
GTCAGTGAAACAAGAAGAAA+AGG 0.437216 8_3:-20723605 Msa1281300:CDS
TTCAATGAAGAACACAGAAA+TGG 0.438657 8_3:-20723854 Msa1281300:CDS
CCCTAGAAGCATTGCAGAGA+GGG 0.444514 8_3:-20721095 Msa1281300:CDS
TGTAAAATTCGTGCCAAAAG+AGG 0.450273 8_3:-20721130 Msa1281300:CDS
ATAATTGCTCCAATCTCATT+AGG 0.465778 8_3:-20723444 Msa1281300:CDS
CTAGCTTCACCAATGACTAC+TGG 0.472078 8_3:-20721895 Msa1281300:CDS
AACCTATGTTTGTGTCTACA+AGG 0.486036 8_3:+20723734 None:intergenic
AGCTAGGCAGACTCAAATGA+TGG 0.490931 8_3:+20721209 None:intergenic
CATAATCAAGGATTTCCAAA+TGG 0.493678 8_3:-20723508 Msa1281300:CDS
AGAACTATCCCAGTAGTCAT+TGG 0.496050 8_3:+20721886 None:intergenic
TATCAAACTCAACATAATCA+AGG 0.521491 8_3:-20723520 Msa1281300:CDS
TTCCATTTCTGAACTTGTAG+AGG 0.527988 8_3:+20723654 None:intergenic
GCCTAGCTCTTCTTCCAAGA+TGG 0.534945 8_3:-20721194 Msa1281300:CDS
ACTTTCCAAAGCATTTGAAG+TGG 0.539932 8_3:+20721808 None:intergenic
TGAACGATACCGCGTTAAGC+CGG 0.550117 8_3:+20723780 None:intergenic
TGTATTAAAAGTAGAAACAT+GGG 0.555635 8_3:-20721950 Msa1281300:CDS
TCCATTTCTGAACTTGTAGA+GGG 0.558247 8_3:+20723655 None:intergenic
TAGCTTCACCAATGACTACT+GGG 0.565945 8_3:-20721894 Msa1281300:CDS
AGATTCAGAATTGGTAAACA+TGG 0.566542 8_3:+20723630 None:intergenic
TTGTATTAAAAGTAGAAACA+TGG 0.569384 8_3:-20721951 Msa1281300:CDS
CAGTAGTCATTGGTGAAGCT+AGG 0.577944 8_3:+20721896 None:intergenic
AGGCTTGTAAGTAACGAGCT+TGG 0.582153 8_3:+20723754 None:intergenic
TGGCATCTTGATAGAGCAAG+AGG 0.582833 8_3:+20722012 None:intergenic
CAAGCTTTCAACTACTCTGA+AGG 0.588993 8_3:-20723880 Msa1281300:CDS
TGCAATGCTTCTAGGGTGAG+TGG 0.590036 8_3:+20721102 None:intergenic
CAAGCTACTACATCATCTAG+TGG 0.611174 8_3:-20722067 Msa1281300:CDS
AAAACAATTCCGGCTTAACG+CGG 0.617284 8_3:-20723789 Msa1281300:CDS
GCCATCTTGGAAGAAGAGCT+AGG 0.619465 8_3:+20721193 None:intergenic
ATCTTGATAGAGCAAGAGGA+TGG 0.627820 8_3:+20722016 None:intergenic
GCTAGGCAGACTCAAATGAT+GGG 0.628666 8_3:+20721210 None:intergenic
GCTTTCAACTACTCTGAAGG+TGG 0.629565 8_3:-20723877 Msa1281300:CDS
AGCCTTGTAGACACAAACAT+AGG 0.644549 8_3:-20723736 Msa1281300:CDS
ACCCTAGAAGCATTGCAGAG+AGG 0.691130 8_3:-20721096 Msa1281300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTTTTTTTATCTTACT+TGG - chr8_3:20721611-20721630 Msa1281300:intron 15.0%
!!! ATACTAAAATTTAGTTTAGA+AGG - chr8_3:20722330-20722349 Msa1281300:intron 15.0%
!!! AAATATATGCATATTTTTCT+AGG - chr8_3:20722367-20722386 Msa1281300:intron 15.0%
!!! AGTAAAATATACTTTTTCAA+TGG + chr8_3:20722822-20722841 None:intergenic 15.0%
!!! AAAAGTATATTTTACTTTGT+AGG - chr8_3:20722826-20722845 Msa1281300:intron 15.0%
!!! AAAGTATATTTTACTTTGTA+GGG - chr8_3:20722827-20722846 Msa1281300:intron 15.0%
!!! TTACTTGGTAATATCTATTA+TGG - chr8_3:20721626-20721645 Msa1281300:intron 20.0%
!!! ATTTCTTTTTTGATAATGCT+TGG - chr8_3:20721692-20721711 Msa1281300:intron 20.0%
!!! ATCTAAGAAAGTAATTTTGT+AGG - chr8_3:20721934-20721953 Msa1281300:CDS 20.0%
!!! ATACCTGTTCTTATTTTTTA+TGG - chr8_3:20721965-20721984 Msa1281300:CDS 20.0%
!! TTTCCATAAAAAATAAGAAC+AGG + chr8_3:20721971-20721990 None:intergenic 20.0%
!! TGATAATATAGTAAAGCAAT+TGG - chr8_3:20722093-20722112 Msa1281300:intron 20.0%
!! GATAATATAGTAAAGCAATT+GGG - chr8_3:20722094-20722113 Msa1281300:intron 20.0%
!! TAATTAATTGTCTATTCATC+AGG + chr8_3:20722218-20722237 None:intergenic 20.0%
!! GAATAGACAATTAATTATCT+TGG - chr8_3:20722221-20722240 Msa1281300:intron 20.0%
!! TAATTATCTTGGACATTATT+AGG - chr8_3:20722232-20722251 Msa1281300:intron 20.0%
!! GTAAAAGTAGTTTATACATT+AGG + chr8_3:20722585-20722604 None:intergenic 20.0%
!! TCTAAAAAAACTTGTACTAA+TGG - chr8_3:20722851-20722870 Msa1281300:intron 20.0%
!! TTGTATTAAAAGTAGAAACA+TGG - chr8_3:20723031-20723050 Msa1281300:intron 20.0%
!! TGTATTAAAAGTAGAAACAT+GGG - chr8_3:20723032-20723051 Msa1281300:intron 20.0%
!! CTAAGTATAATCTTTACAAA+AGG + chr8_3:20723245-20723264 None:intergenic 20.0%
!!! AACTTTTTGAGTAAAAATTC+TGG + chr8_3:20723441-20723460 None:intergenic 20.0%
!!! AGATTCAAAATTTTGGTTTT+TGG + chr8_3:20723619-20723638 None:intergenic 20.0%
!!! CAAAATGAGATTCAAAATTT+TGG + chr8_3:20723626-20723645 None:intergenic 20.0%
!!! ATTTTTTAGTAGAGAATAGT+AGG - chr8_3:20723648-20723667 Msa1281300:CDS 20.0%
!! TCAACAATGATAAAAGTTTA+AGG + chr8_3:20723695-20723714 None:intergenic 20.0%
!! ACAGAAATGGATTCAAAATT+TGG - chr8_3:20721141-20721160 Msa1281300:CDS 25.0%
! TATTGTATTCCATGTGAAAA+AGG + chr8_3:20721405-20721424 None:intergenic 25.0%
! CAATACAATGATTACTCTTA+TGG - chr8_3:20721420-20721439 Msa1281300:intron 25.0%
! TATCAAACTCAACATAATCA+AGG - chr8_3:20721462-20721481 Msa1281300:intron 25.0%
!! TGAGTTTTTCTCCAATTATT+CGG - chr8_3:20721578-20721597 Msa1281300:intron 25.0%
! ATCAAGCTCAAATCTATTAT+CGG - chr8_3:20721716-20721735 Msa1281300:intron 25.0%
!! AAATCAGGTCTTTTCTTTTA+CGG + chr8_3:20721827-20721846 None:intergenic 25.0%
! GGATCAACTAAAAATTTAAG+AGG - chr8_3:20721862-20721881 Msa1281300:CDS 25.0%
! CAATAATACTGCACAAAATA+GGG + chr8_3:20722075-20722094 None:intergenic 25.0%
! TCAATAATACTGCACAAAAT+AGG + chr8_3:20722076-20722095 None:intergenic 25.0%
! TATATTTACTTAACACACGA+TGG - chr8_3:20722416-20722435 Msa1281300:intron 25.0%
! AACAAGACATGTATTGTTAA+GGG + chr8_3:20722540-20722559 None:intergenic 25.0%
! AAACAAGACATGTATTGTTA+AGG + chr8_3:20722541-20722560 None:intergenic 25.0%
!! TTAACAATACATGTCTTGTT+TGG - chr8_3:20722540-20722559 Msa1281300:intron 25.0%
!!! GTTGATTTTATAAACTATCC+TGG - chr8_3:20722650-20722669 Msa1281300:intron 25.0%
! TCCAAAAAATGCTACTAATA+AGG - chr8_3:20723136-20723155 Msa1281300:intron 25.0%
! CCAAAAAATGCTACTAATAA+GGG - chr8_3:20723137-20723156 Msa1281300:intron 25.0%
!!! GAATTTCCATTTTAACCAAT+TGG - chr8_3:20723219-20723238 Msa1281300:intron 25.0%
!!! CTTGTTTTAGGTAAAATAGT+GGG + chr8_3:20723343-20723362 None:intergenic 25.0%
!!! TCTTGTTTTAGGTAAAATAG+TGG + chr8_3:20723344-20723363 None:intergenic 25.0%
!!! TTGAGTAAAAATTCTGGTTT+TGG + chr8_3:20723435-20723454 None:intergenic 25.0%
! TCTCTTTAGATTCAAAATTC+GGG + chr8_3:20723474-20723493 None:intergenic 25.0%
! CTCTCTTTAGATTCAAAATT+CGG + chr8_3:20723475-20723494 None:intergenic 25.0%
TTCAATGAAGAACACAGAAA+TGG - chr8_3:20721128-20721147 Msa1281300:CDS 30.0%
AGATTCAGAATTGGTAAACA+TGG + chr8_3:20721355-20721374 None:intergenic 30.0%
CATAATCAAGGATTTCCAAA+TGG - chr8_3:20721474-20721493 Msa1281300:intron 30.0%
!! GTTGAAGGAAATGTTTTTGA+TGG - chr8_3:20721507-20721526 Msa1281300:intron 30.0%
ATAATTGCTCCAATCTCATT+AGG - chr8_3:20721538-20721557 Msa1281300:intron 30.0%
AGCACTAACAATTACACAAA+AGG + chr8_3:20721657-20721676 None:intergenic 30.0%
TCAAGCTCAAATCTATTATC+GGG - chr8_3:20721717-20721736 Msa1281300:intron 30.0%
! AGGTCTTATCTCATCAAATA+TGG + chr8_3:20721802-20721821 None:intergenic 30.0%
! AGAAAGTAATTTTGTAGGAG+TGG - chr8_3:20721939-20721958 Msa1281300:CDS 30.0%
TTAATTGTCTATTCATCAGG+AGG + chr8_3:20722215-20722234 None:intergenic 30.0%
AAAAAACTTGTACTAATGGC+AGG - chr8_3:20722855-20722874 Msa1281300:intron 30.0%
! GGTTCATTTTCAACAATTTG+TGG + chr8_3:20722993-20723012 None:intergenic 30.0%
AGAAACATGGGAAATGATAA+TGG - chr8_3:20723044-20723063 Msa1281300:intron 30.0%
!!! CCCTTATTAGTAGCATTTTT+TGG + chr8_3:20723140-20723159 None:intergenic 30.0%
AAAAGGCCAATTGGTTAAAA+TGG + chr8_3:20723228-20723247 None:intergenic 30.0%
AATCTTTACAAAAGGCCAAT+TGG + chr8_3:20723237-20723256 None:intergenic 30.0%
TTTAATTGTCTCTTTGTGAG+AGG + chr8_3:20723295-20723314 None:intergenic 30.0%
!!! GAGGACTAAAATCTTGTTTT+AGG + chr8_3:20723355-20723374 None:intergenic 30.0%
CAAAAAATTGTGAAATCGAG+GGG + chr8_3:20723402-20723421 None:intergenic 30.0%
GCAAAAAATTGTGAAATCGA+GGG + chr8_3:20723403-20723422 None:intergenic 30.0%
TGCAAAAAATTGTGAAATCG+AGG + chr8_3:20723404-20723423 None:intergenic 30.0%
ACAAAACATTATCACTTTCG+AGG - chr8_3:20723498-20723517 Msa1281300:CDS 30.0%
! AGACAAAAGTTGCCAATTTT+GGG - chr8_3:20723542-20723561 Msa1281300:CDS 30.0%
CCATATTGTTTACCCAAAAT+TGG + chr8_3:20723557-20723576 None:intergenic 30.0%
!! CCAATTTTGGGTAAACAATA+TGG - chr8_3:20723554-20723573 Msa1281300:CDS 30.0%
TTTGGGTAAACAATATGGAT+TGG - chr8_3:20723559-20723578 Msa1281300:CDS 30.0%
TTGGGTAAACAATATGGATT+GGG - chr8_3:20723560-20723579 Msa1281300:CDS 30.0%
! TTCACACATTGTCGTAATTT+TGG + chr8_3:20723587-20723606 None:intergenic 30.0%
ATTACGACAATGTGTGAAAT+TGG - chr8_3:20723589-20723608 Msa1281300:CDS 30.0%
TTACGACAATGTGTGAAATT+GGG - chr8_3:20723590-20723609 Msa1281300:CDS 30.0%
! GATTTTGGATACCAAAAACT+TGG - chr8_3:20723744-20723763 Msa1281300:CDS 30.0%
CATTGTCTCCAAAACAATTC+CGG - chr8_3:20721183-20721202 Msa1281300:CDS 35.0%
AACCTATGTTTGTGTCTACA+AGG + chr8_3:20721251-20721270 None:intergenic 35.0%
TCCATTTCTGAACTTGTAGA+GGG + chr8_3:20721330-20721349 None:intergenic 35.0%
TTCCATTTCTGAACTTGTAG+AGG + chr8_3:20721331-20721350 None:intergenic 35.0%
CACTGACAAAGATTCAGAAT+TGG + chr8_3:20721364-20721383 None:intergenic 35.0%
GTCAGTGAAACAAGAAGAAA+AGG - chr8_3:20721377-20721396 Msa1281300:intron 35.0%
!! GAAAAGGATCCTTTTTCACA+TGG - chr8_3:20721393-20721412 Msa1281300:intron 35.0%
GGATTTCCAAATGGTTCTTT+AGG - chr8_3:20721483-20721502 Msa1281300:intron 35.0%
TCAACACCTAAAGAACCATT+TGG + chr8_3:20721492-20721511 None:intergenic 35.0%
!! AATGGTTCTTTAGGTGTTGA+AGG - chr8_3:20721492-20721511 Msa1281300:intron 35.0%
! ACTCTTTTGCCTAATGAGAT+TGG + chr8_3:20721550-20721569 None:intergenic 35.0%
TAATTGGAGAAAAACTCAGC+AGG + chr8_3:20721576-20721595 None:intergenic 35.0%
!! TCCAATTATTCGGTTGATAG+TGG - chr8_3:20721588-20721607 Msa1281300:intron 35.0%
ACCACTATCAACCGAATAAT+TGG + chr8_3:20721592-20721611 None:intergenic 35.0%
!! ACACTCCAAGATGTTAGTTT+TGG - chr8_3:20721751-20721770 Msa1281300:intron 35.0%
!!! CACTCCAAGATGTTAGTTTT+GGG - chr8_3:20721752-20721771 Msa1281300:intron 35.0%
! AGGTCTTTTCTTTTACGGTT+AGG + chr8_3:20721822-20721841 None:intergenic 35.0%
! GAAAAGACCTGATTTTGTAG+CGG - chr8_3:20721832-20721851 Msa1281300:CDS 35.0%
! TGGTTGGTCAATATTGATCA+TGG + chr8_3:20722003-20722022 None:intergenic 35.0%
! TTGCTTGCTAGTTGTTAACT+AGG - chr8_3:20722027-20722046 Msa1281300:CDS 35.0%
AATAGTCAACTCTCTTAGCA+AGG + chr8_3:20722161-20722180 None:intergenic 35.0%
TATCTTGGACATTATTAGGC+TGG - chr8_3:20722236-20722255 Msa1281300:intron 35.0%
GAAGAGAAGAGGGTAAAAAT+GGG - chr8_3:20722258-20722277 Msa1281300:intron 35.0%
GAGGGTAAAAATGGGATATT+AGG - chr8_3:20722266-20722285 Msa1281300:intron 35.0%
! TGTTTTCTTCAAGAGAAGCT+TGG - chr8_3:20722473-20722492 Msa1281300:intron 35.0%
! GTTTTCTTCAAGAGAAGCTT+GGG - chr8_3:20722474-20722493 Msa1281300:intron 35.0%
!!! CTTATTTTTGTAAGCTCTCC+AGG + chr8_3:20722671-20722690 None:intergenic 35.0%
! ACTACATCATCTAGTGGATA+TGG - chr8_3:20722921-20722940 Msa1281300:intron 35.0%
! GTTTTCCACTTCAAATGCTT+TGG - chr8_3:20723169-20723188 Msa1281300:intron 35.0%
! ACTTTCCAAAGCATTTGAAG+TGG + chr8_3:20723177-20723196 None:intergenic 35.0%
!! TTCAAATGCTTTGGAAAGTC+AGG - chr8_3:20723178-20723197 Msa1281300:intron 35.0%
! CAAAATCCGGATTTTCGAAT+GGG + chr8_3:20723377-20723396 None:intergenic 35.0%
! TCAAAATCCGGATTTTCGAA+TGG + chr8_3:20723378-20723397 None:intergenic 35.0%
! GAGACAAAAGTTGCCAATTT+TGG - chr8_3:20723541-20723560 Msa1281300:CDS 35.0%
TACGACAATGTGTGAAATTG+GGG - chr8_3:20723591-20723610 Msa1281300:CDS 35.0%
AGGTACAATGCTACAAACAT+TGG + chr8_3:20723675-20723694 None:intergenic 35.0%
! AGTTGCCAGAATGTAGATTT+TGG - chr8_3:20723729-20723748 Msa1281300:CDS 35.0%
GGTATCCAAAATCTACATTC+TGG + chr8_3:20723737-20723756 None:intergenic 35.0%
! GAGAAGTTTTTACACGTTCA+AGG - chr8_3:20723819-20723838 Msa1281300:CDS 35.0%
! CTTTTGGCACGAATTTTACA+TGG + chr8_3:20723852-20723871 None:intergenic 35.0%
TGTAAAATTCGTGCCAAAAG+AGG - chr8_3:20723852-20723871 Msa1281300:CDS 35.0%
CAAGCTTTCAACTACTCTGA+AGG - chr8_3:20721102-20721121 Msa1281300:CDS 40.0%
AAAACAATTCCGGCTTAACG+CGG - chr8_3:20721193-20721212 Msa1281300:CDS 40.0%
! AGCCTTGTAGACACAAACAT+AGG - chr8_3:20721246-20721265 Msa1281300:CDS 40.0%
TCCCTCTACAAGTTCAGAAA+TGG - chr8_3:20721326-20721345 Msa1281300:intron 40.0%
AAATCTATTATCGGGCCACT+CGG - chr8_3:20721725-20721744 Msa1281300:intron 40.0%
TACGCCCAAAACTAACATCT+TGG + chr8_3:20721759-20721778 None:intergenic 40.0%
!!! GATGTTAGTTTTGGGCGTAA+TGG - chr8_3:20721760-20721779 Msa1281300:intron 40.0%
TAATCCACCGCTACAAAATC+AGG + chr8_3:20721842-20721861 None:intergenic 40.0%
!! TGATTTTGTAGCGGTGGATT+AGG - chr8_3:20721841-20721860 Msa1281300:CDS 40.0%
AACAACTAGCAAGCAAGCTT+TGG + chr8_3:20722023-20722042 None:intergenic 40.0%
TTATTAGGCTGGAAGAGAAG+AGG - chr8_3:20722247-20722266 Msa1281300:intron 40.0%
TATTAGGCTGGAAGAGAAGA+GGG - chr8_3:20722248-20722267 Msa1281300:intron 40.0%
GGAAGAGAAGAGGGTAAAAA+TGG - chr8_3:20722257-20722276 Msa1281300:intron 40.0%
GGAGAGAATCTGTGAAAAGA+AGG - chr8_3:20722287-20722306 Msa1281300:intron 40.0%
TCTTGAGTCCTAACTCCTAA+GGG - chr8_3:20722439-20722458 Msa1281300:intron 40.0%
! ATCTTTTGCCCTTAGGAGTT+AGG + chr8_3:20722450-20722469 None:intergenic 40.0%
! AACAGAGATCTTTTGCCCTT+AGG + chr8_3:20722457-20722476 None:intergenic 40.0%
! AGGTTTTGCACCATTAAGAG+AGG - chr8_3:20722875-20722894 Msa1281300:intron 40.0%
TTTGCACCATTAAGAGAGGT+AGG - chr8_3:20722879-20722898 Msa1281300:intron 40.0%
ACACTTCCTACCTCTCTTAA+TGG + chr8_3:20722888-20722907 None:intergenic 40.0%
! AGAGAGGTAGGAAGTGTAAA+TGG - chr8_3:20722891-20722910 Msa1281300:intron 40.0%
CAAGCTACTACATCATCTAG+TGG - chr8_3:20722915-20722934 Msa1281300:intron 40.0%
ATCTTGATAGAGCAAGAGGA+TGG + chr8_3:20722969-20722988 None:intergenic 40.0%
! CAATTTGCTTGAAGAGCTTC+AGG + chr8_3:20723014-20723033 None:intergenic 40.0%
TAGCTTCACCAATGACTACT+GGG - chr8_3:20723088-20723107 Msa1281300:intron 40.0%
AGAACTATCCCAGTAGTCAT+TGG + chr8_3:20723099-20723118 None:intergenic 40.0%
TACTTAGATACGCCTAAGCA+TGG - chr8_3:20723258-20723277 Msa1281300:intron 40.0%
GAACAAGAAGAACCATGCTT+AGG + chr8_3:20723273-20723292 None:intergenic 40.0%
AAATCGAGGGGATCAAAATC+CGG + chr8_3:20723390-20723409 None:intergenic 40.0%
ACGACAATGTGTGAAATTGG+GGG - chr8_3:20723592-20723611 Msa1281300:CDS 40.0%
! GATGGGTCAAACCAAGTTTT+TGG + chr8_3:20723758-20723777 None:intergenic 40.0%
TTCTTCCAAGATGGCTACTA+TGG - chr8_3:20723797-20723816 Msa1281300:CDS 40.0%
! GCTTTCAACTACTCTGAAGG+TGG - chr8_3:20721105-20721124 Msa1281300:CDS 45.0%
! GCGTTAAGCCGGAATTGTTT+TGG + chr8_3:20721194-20721213 None:intergenic 45.0%
AGGCTTGTAAGTAACGAGCT+TGG + chr8_3:20721231-20721250 None:intergenic 45.0%
! AAGACCTGATTTTGTAGCGG+TGG - chr8_3:20721835-20721854 Msa1281300:CDS 45.0%
! ACTAGCAAGCAAGCTTTGGT+TGG + chr8_3:20722019-20722038 None:intergenic 45.0%
GCAATTGGGAGTGACTTGAA+TGG - chr8_3:20722108-20722127 Msa1281300:intron 45.0%
GTCTTGAGTCCTAACTCCTA+AGG - chr8_3:20722438-20722457 Msa1281300:intron 45.0%
TTCTTCAAGAGAAGCTTGGG+AGG - chr8_3:20722477-20722496 Msa1281300:intron 45.0%
TCTTCAAGAGAAGCTTGGGA+GGG - chr8_3:20722478-20722497 Msa1281300:intron 45.0%
TGGCATCTTGATAGAGCAAG+AGG + chr8_3:20722973-20722992 None:intergenic 45.0%
CAGTAGTCATTGGTGAAGCT+AGG + chr8_3:20723089-20723108 None:intergenic 45.0%
CTAGCTTCACCAATGACTAC+TGG - chr8_3:20723087-20723106 Msa1281300:intron 45.0%
AGTCCTCCCATTCGAAAATC+CGG - chr8_3:20723368-20723387 Msa1281300:intron 45.0%
! AATCCGGATTTTCGAATGGG+AGG + chr8_3:20723374-20723393 None:intergenic 45.0%
GCTAGGCAGACTCAAATGAT+GGG + chr8_3:20723775-20723794 None:intergenic 45.0%
AGCTAGGCAGACTCAAATGA+TGG + chr8_3:20723776-20723795 None:intergenic 45.0%
CTTCTCCATAGTAGCCATCT+TGG + chr8_3:20723805-20723824 None:intergenic 45.0%
AGCATTGCAGAGAGGGTAAA+AGG - chr8_3:20723894-20723913 Msa1281300:CDS 45.0%
TGAACGATACCGCGTTAAGC+CGG + chr8_3:20721205-20721224 None:intergenic 50.0%
ATCTTGGAGTGTGATCCGAG+TGG + chr8_3:20721743-20721762 None:intergenic 50.0%
AGCTTGGGAGGGTCTTTGAT+TGG - chr8_3:20722489-20722508 Msa1281300:intron 50.0%
! GCCTAGCTCTTCTTCCAAGA+TGG - chr8_3:20723788-20723807 Msa1281300:CDS 50.0%
GCCATCTTGGAAGAAGAGCT+AGG + chr8_3:20723792-20723811 None:intergenic 50.0%
! GTGAGTGGCAAAGCCTCTTT+TGG + chr8_3:20723868-20723887 None:intergenic 50.0%
!! TGCAATGCTTCTAGGGTGAG+TGG + chr8_3:20723883-20723902 None:intergenic 50.0%
!! ACCCTAGAAGCATTGCAGAG+AGG - chr8_3:20723886-20723905 Msa1281300:CDS 50.0%
CCCTCTCTGCAATGCTTCTA+GGG + chr8_3:20723890-20723909 None:intergenic 50.0%
!! CCCTAGAAGCATTGCAGAGA+GGG - chr8_3:20723887-20723906 Msa1281300:CDS 50.0%
ACCCTCTCTGCAATGCTTCT+AGG + chr8_3:20723891-20723910 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 20721084 20723920 20721084 ID=Msa1281300;Name=Msa1281300
chr8_3 mRNA 20721084 20723920 20721084 ID=Msa1281300-mRNA-1;Parent=Msa1281300;Name=Msa1281300-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0|1|1|1|3|0|335
chr8_3 exon 20723395 20723920 20723395 ID=Msa1281300-mRNA-1:exon:7569;Parent=Msa1281300-mRNA-1
chr8_3 exon 20721805 20722103 20721805 ID=Msa1281300-mRNA-1:exon:7568;Parent=Msa1281300-mRNA-1
chr8_3 exon 20721084 20721266 20721084 ID=Msa1281300-mRNA-1:exon:7567;Parent=Msa1281300-mRNA-1
chr8_3 CDS 20723395 20723920 20723395 ID=Msa1281300-mRNA-1:cds;Parent=Msa1281300-mRNA-1
chr8_3 CDS 20721805 20722103 20721805 ID=Msa1281300-mRNA-1:cds;Parent=Msa1281300-mRNA-1
chr8_3 CDS 20721084 20721266 20721084 ID=Msa1281300-mRNA-1:cds;Parent=Msa1281300-mRNA-1
Gene Sequence

>Msa1281300

ATGAGCATTGTGTATACTCAAGCTTTCAACTACTCTGAAGGTGGTTCAATGAAGAACACAGAAATGGATTCAAAATTTGGTTACTCACAAACACAACAACATTGTCTCCAAAACAATTCCGGCTTAACGCGGTATCGTTCAGCTCCAAGCTCGTTACTTACAAGCCTTGTAGACACAAACATAGGTTTTTTCAATGATGAAACTTTCAGAAATGATAATCAGCAGCAGCAGCAGCATTATTCTCCCTCTACAAGTTCAGAAATGGAAACCATGTTTACCAATTCTGAATCTTTGTCAGTGAAACAAGAAGAAAAGGATCCTTTTTCACATGGAATACAATACAATGATTACTCTTATGGATCTCAAAATCAGATAAATTATCAAACTCAACATAATCAAGGATTTCCAAATGGTTCTTTAGGTGTTGAAGGAAATGTTTTTGATGGTTCTTCTAATAATTGCTCCAATCTCATTAGGCAAAAGAGTTCTCCTGCTGAGTTTTTCTCCAATTATTCGGTTGATAGTGGAAGTGTAAATGGACAAGCTACTACATCATCTAGTGGATATGGTACTTTGAACTTCTCATCTAGACCATCCTCTTGCTCTATCAAGATGCCACAAATTGTTGAAAATGAACCTGAAGCTCTTCAAGCAAATTGTATTAAAAGTAGAAACATGGGAAATGATAATGGTATCACAAAATGTTACATGCCTAGCTTCACCAATGACTACTGGGATAGTTCTACTTCTACATTCAGTGCTCCAAAAAATGCTACTAATAAGGGTGAATTCATGTTTTCCACTTCAAATGCTTTGGAAAGTCAGAATGTAGATTTTGGATACCAAAAACTTGGTTTGACCCATCATTTGAGTCTGCCTAGCTCTTCTTCCAAGATGGCTACTATGGAGAAGTTTTTACACGTTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTAAAAGGCTAA

Protein sequence

>Msa1281300

MSIVYTQAFNYSEGGSMKNTEMDSKFGYSQTQQHCLQNNSGLTRYRSAPSSLLTSLVDTNIGFFNDETFRNDNQQQQQHYSPSTSSEMETMFTNSESLSVKQEEKDPFSHGIQYNDYSYGSQNQINYQTQHNQGFPNGSLGVEGNVFDGSSNNCSNLIRQKSSPAEFFSNYSVDSGSVNGQATTSSSGYGTLNFSSRPSSCSIKMPQIVENEPEALQANCIKSRNMGNDNGITKCYMPSFTNDYWDSSTSTFSAPKNATNKGEFMFSTSNALESQNVDFGYQKLGLTHHLSLPSSSSKMATMEKFLHVQGSVPCKIRAKRGFATHPRSIAERVKG*