AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427660 MtrunA17_Chr3g0130611 92.045 528 5 3 19 509 1 528 0.0 961
Msa0427660 MtrunA17_Chr1g0209091 40.421 522 271 6 19 503 1 519 1.95e-128 384
Msa0427660 MtrunA17_Chr1g0209111 39.216 255 141 3 32 273 12 265 7.20e-62 204
Msa0427660 MtrunA17_Chr1g0209101 39.844 256 128 3 272 503 4 257 1.79e-54 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427660 AT2G01170.1 39.923 521 267 7 19 502 3 514 3.58e-118 358
Msa0427660 AT2G01170.2 39.220 436 225 6 104 502 3 435 6.86e-91 285

Find 125 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGCATCATTTCAGTATT+TGG 0.119079 3_2:+78352282 Msa0427660:CDS
TCAACTTTGATTCAGGATTT+TGG 0.145062 3_2:+78352687 Msa0427660:intron
CAACTGGTTCTCTGTACTTT+TGG 0.160818 3_2:+78351168 Msa0427660:CDS
AATTATGCACCTGTTGCTTT+AGG 0.178838 3_2:+78353531 Msa0427660:CDS
AGATGCAAGAAAATGGTTTA+AGG 0.226303 3_2:+78353590 Msa0427660:CDS
ACTACATTCACCTTCAAAAT+TGG 0.230691 3_2:-78353288 None:intergenic
GCAGCAATCTGCATTCTTCT+TGG 0.235084 3_2:+78353261 Msa0427660:CDS
ATACATAAGAATAGCCATTT+TGG 0.251599 3_2:-78351581 None:intergenic
TTCTTCCATAAGAATGAAAA+TGG 0.252336 3_2:-78353192 None:intergenic
CAGGCCCTGCAAGTCTTGTT+TGG 0.252615 3_2:+78350646 Msa0427660:CDS
TTTGCTTGATAGCATTTCTA+TGG 0.255593 3_2:+78353445 Msa0427660:CDS
ACATTGGCCTCACTGTTATA+TGG 0.257508 3_2:+78351606 Msa0427660:CDS
ATTATGCACCTGTTGCTTTA+GGG 0.273593 3_2:+78353532 Msa0427660:CDS
GGCACTTACATTCAGCATTC+AGG 0.273760 3_2:+78352320 Msa0427660:CDS
AGGCCCTGCAAGTCTTGTTT+GGG 0.292654 3_2:+78350647 Msa0427660:CDS
GGGTATTAGATGCAAGAAAA+TGG 0.313548 3_2:+78353583 Msa0427660:CDS
CACATTTAGCTGGTCCGAAA+TGG 0.325538 3_2:+78351195 Msa0427660:CDS
GCTCCAGCTGTCTCATTGTT+TGG 0.328718 3_2:-78352723 None:intergenic
TTGAAAGTATCCCATGTAAT+AGG 0.337507 3_2:-78353510 None:intergenic
GTTTCTTCACTTGGTTTGTT+GGG 0.339481 3_2:+78350685 Msa0427660:CDS
CTCTCAACAGGCACAAATAA+AGG 0.345923 3_2:+78351542 Msa0427660:CDS
GAAGAAAATGGTCCCCATTT+CGG 0.356622 3_2:-78351209 None:intergenic
TGTCACTTCCGGAACAAAAC+TGG 0.363476 3_2:-78350362 None:intergenic
TGTTTCTTCACTTGGTTTGT+TGG 0.363835 3_2:+78350684 Msa0427660:CDS
CTTGCCTTGCCCAAATAAAA+AGG 0.366855 3_2:-78353414 None:intergenic
TGAGCATCAATGTTCCTAAC+TGG 0.368203 3_2:-78353615 None:intergenic
CTATGCCCTGTCAAGGGATA+AGG 0.370330 3_2:+78353164 Msa0427660:CDS
GAGGGTACTTTGCTCCAAAA+TGG 0.371022 3_2:+78351567 Msa0427660:CDS
TCATCGATATAATTTCAATA+TGG 0.373370 3_2:+78351666 Msa0427660:CDS
GTTGCTTTAGGGGTCGGTTT+GGG 0.377735 3_2:+78353543 Msa0427660:CDS
TCTCATTGTTTGGATCATAA+AGG 0.378149 3_2:-78352713 None:intergenic
GATGCAAGAAAATGGTTTAA+GGG 0.381285 3_2:+78353591 Msa0427660:CDS
ATCACCATTCTTGCAAAGAT+TGG 0.383163 3_2:-78353366 None:intergenic
GTGAGCCAGTATTCCCTCTA+TGG 0.384775 3_2:+78352183 Msa0427660:intron
CTGCAAGTCTTGTTTGGGGA+TGG 0.389171 3_2:+78350652 Msa0427660:CDS
TTTCTTCATGGTGTTGTGCT+TGG 0.389525 3_2:+78351225 Msa0427660:CDS
TGTTGCTTTAGGGGTCGGTT+TGG 0.389839 3_2:+78353542 Msa0427660:CDS
CATCCCCAAACAAGACTTGC+AGG 0.394578 3_2:-78350651 None:intergenic
AGAAATGCTATCAAGCAAAT+TGG 0.403456 3_2:-78353441 None:intergenic
TCAACAGAACCCTTGTTACA+TGG 0.405450 3_2:+78350330 Msa0427660:CDS
AATGGTTTAAGGGGCCAGTT+AGG 0.414282 3_2:+78353601 Msa0427660:CDS
TAGTTGTTTGTTTCTTCACT+TGG 0.416921 3_2:+78350676 Msa0427660:CDS
ACATTTAGCTGGTCCGAAAT+GGG 0.416980 3_2:+78351196 Msa0427660:CDS
GTTTGGGTCTAATAATGCTT+TGG 0.418172 3_2:+78353559 Msa0427660:CDS
TTTGTAGGAACCTTGTGTTT+TGG 0.418644 3_2:-78353222 None:intergenic
GCACAACACCATGAAGAAAA+TGG 0.419284 3_2:-78351221 None:intergenic
ATTTGGATGGGCTTACATCT+TGG 0.421982 3_2:+78352299 Msa0427660:CDS
AATGATAGAATCACTGCATA+TGG 0.426309 3_2:-78352156 None:intergenic
TGGGTCTAATAATGCTTTGG+TGG 0.434711 3_2:+78353562 Msa0427660:CDS
CAACTCTTTATCCTATTACA+TGG 0.435931 3_2:+78353499 Msa0427660:CDS
GATTCAATCTAACAGACAAC+TGG 0.436647 3_2:+78351152 Msa0427660:intron
CAGAGCCATACAGCATTTGT+AGG 0.439578 3_2:-78353237 None:intergenic
ATAACTTCAATAGCCACAAT+TGG 0.440996 3_2:+78353321 Msa0427660:CDS
ACTGGAATCACACCTCTGTA+TGG 0.444050 3_2:+78350606 Msa0427660:CDS
GCAAGAACTAAGAAGAGAAA+TGG 0.444571 3_2:+78350438 Msa0427660:CDS
CCAGGCTTGAAGTTCTTCTC+AGG 0.445201 3_2:-78353390 None:intergenic
GAATTAGCATCTGATACAAC+AGG 0.449362 3_2:+78352120 Msa0427660:CDS
GCACCTGTTGCTTTAGGGGT+CGG 0.452904 3_2:+78353537 Msa0427660:CDS
TGCAAGTCTTGTTTGGGGAT+GGG 0.454102 3_2:+78350653 Msa0427660:CDS
TAGGATAAAGAGTTGGCAAC+AGG 0.454242 3_2:-78353491 None:intergenic
CATTGGCCTCACTGTTATAT+GGG 0.456388 3_2:+78351607 Msa0427660:CDS
AGTTCCAATCTTTGCAAGAA+TGG 0.458612 3_2:+78353362 Msa0427660:CDS
GCATCATTTCAGTATTTGGA+TGG 0.461596 3_2:+78352286 Msa0427660:CDS
AGTTTAATCCTACTCTCAAC+AGG 0.469361 3_2:+78351530 Msa0427660:CDS
GGAAGATATCACAATTCTGC+TGG 0.469478 3_2:+78352783 Msa0427660:CDS
AAACCGACCCCTAAAGCAAC+AGG 0.470449 3_2:-78353540 None:intergenic
TTTCTGTGTCAGGTTATTGG+TGG 0.473306 3_2:+78352024 Msa0427660:intron
GAACTCCCTTATCCCTTGAC+AGG 0.479526 3_2:-78353170 None:intergenic
AATACTACCAAGTATTGCTA+TGG 0.480039 3_2:-78352262 None:intergenic
GCCACAATTGGATGGGTTGG+TGG 0.481482 3_2:+78353333 Msa0427660:CDS
GGGTCTAATAATGCTTTGGT+GGG 0.484279 3_2:+78353563 Msa0427660:CDS
TATAATTTCAATATGGTGGC+AGG 0.485261 3_2:+78351673 Msa0427660:CDS
TATGCCCTGTCAAGGGATAA+GGG 0.485928 3_2:+78353165 Msa0427660:CDS
ATAGCAATACTTGGTAGTAT+TGG 0.486608 3_2:+78352264 Msa0427660:CDS
TTATGCACCTGTTGCTTTAG+GGG 0.491456 3_2:+78353533 Msa0427660:CDS
CTTCAATAGCCACAATTGGA+TGG 0.494941 3_2:+78353325 Msa0427660:CDS
ATGGTTGGAAAGGCGTATGC+AGG 0.497048 3_2:+78351491 Msa0427660:intron
CATCATTTCAGTATTTGGAT+GGG 0.498028 3_2:+78352287 Msa0427660:CDS
CAGAATTGTGATATCTTCCA+TGG 0.503563 3_2:-78352779 None:intergenic
TATTGAAATTATATCGATGA+AGG 0.507414 3_2:-78351663 None:intergenic
AACTCTTTATCCTATTACAT+GGG 0.509862 3_2:+78353500 Msa0427660:CDS
TATTTGTGCCTGTTGAGAGT+AGG 0.510878 3_2:-78351538 None:intergenic
CCTGAGAAGAACTTCAAGCC+TGG 0.511772 3_2:+78353390 Msa0427660:CDS
AATATGAATTCATCCAATAG+TGG 0.513484 3_2:+78348804 None:intergenic
GGTTCTAGCCTTCTGTATGC+AGG 0.514787 3_2:+78350627 Msa0427660:CDS
GATAGTGATACTGTTACCTC+TGG 0.519304 3_2:+78352053 Msa0427660:CDS
TTCAGGTCTATGCCCTGTCA+AGG 0.519937 3_2:+78353157 Msa0427660:intron
ATAGCCACAATTGGATGGGT+TGG 0.526969 3_2:+78353330 Msa0427660:CDS
GTTTCAGTCCCCATGTAACA+AGG 0.526977 3_2:-78350340 None:intergenic
GAGAAGAGACTAAATGAGCT+TGG 0.534894 3_2:+78350409 Msa0427660:CDS
AGGTTCCTACAAATGCTGTA+TGG 0.535547 3_2:+78353232 Msa0427660:CDS
GATCCAAACAATGAGACAGC+TGG 0.539193 3_2:+78352720 Msa0427660:CDS
TCGATATAATTTCAATATGG+TGG 0.540538 3_2:+78351669 Msa0427660:CDS
TTCAATAGCCACAATTGGAT+GGG 0.541163 3_2:+78353326 Msa0427660:CDS
AGTGACAGAAAACATAGCTA+TGG 0.548979 3_2:+78350378 Msa0427660:CDS
ATGCAAGAAAATGGTTTAAG+GGG 0.550033 3_2:+78353592 Msa0427660:CDS
CTGCAGCATCATATCCATAG+AGG 0.550623 3_2:-78352197 None:intergenic
AATGGACCCATAGCAATACT+TGG 0.552434 3_2:+78352255 Msa0427660:CDS
ATACTCTATGATGCATTCCA+TGG 0.552503 3_2:+78352762 Msa0427660:CDS
ACTAAAGGTGCAGACAAGAA+TGG 0.554611 3_2:+78352237 Msa0427660:CDS
ACAGGCACAAATAAAGGCGG+AGG 0.555550 3_2:+78351548 Msa0427660:CDS
CAACAGAACCCTTGTTACAT+GGG 0.555798 3_2:+78350331 Msa0427660:CDS
CTATTCTTATGTATGTACAT+TGG 0.562884 3_2:+78351590 Msa0427660:CDS
TTGGTTTGTTGGGATTGCAA+TGG 0.572687 3_2:+78350695 Msa0427660:CDS
CATGTAATAGGATAAAGAGT+TGG 0.573094 3_2:-78353498 None:intergenic
ACCACCAACCCATCCAATTG+TGG 0.576324 3_2:-78353334 None:intergenic
TCAGGTCTATGCCCTGTCAA+GGG 0.590519 3_2:+78353158 Msa0427660:intron
GCATCATAGAGTATTTGTGC+TGG 0.596421 3_2:-78352753 None:intergenic
CATTTAACTGAAGAAACTAA+AGG 0.601435 3_2:+78352222 Msa0427660:CDS
GGCCCTGCAAGTCTTGTTTG+GGG 0.606319 3_2:+78350648 Msa0427660:CDS
ATACTACCAAGTATTGCTAT+GGG 0.606656 3_2:-78352261 None:intergenic
TTGCAGGGCCTGCATACAGA+AGG 0.612492 3_2:-78350635 None:intergenic
CATTTAGCTGGTCCGAAATG+GGG 0.626758 3_2:+78351197 Msa0427660:CDS
TGCAGCATCATATCCATAGA+GGG 0.645076 3_2:-78352196 None:intergenic
AGTGATACTGTTACCTCTGG+TGG 0.645216 3_2:+78352056 Msa0427660:CDS
ATCCCCAAACAAGACTTGCA+GGG 0.654831 3_2:-78350650 None:intergenic
AACAGAACCCTTGTTACATG+GGG 0.656415 3_2:+78350332 Msa0427660:CDS
TTTCAGTCCCCATGTAACAA+GGG 0.659735 3_2:-78350339 None:intergenic
TGTTTAGTTAGTGCCACCAG+AGG 0.660806 3_2:-78352069 None:intergenic
CAGGCACAAATAAAGGCGGA+GGG 0.669164 3_2:+78351549 Msa0427660:CDS
AACTCCCTTATCCCTTGACA+GGG 0.675866 3_2:-78353169 None:intergenic
GAAACTGCATCCAAAACACA+AGG 0.696453 3_2:+78353212 Msa0427660:CDS
TCAACAGGCACAAATAAAGG+CGG 0.709488 3_2:+78351545 Msa0427660:CDS
ATGCTGCCCATATAACAGTG+AGG 0.755036 3_2:-78351613 None:intergenic
AGAAGGCTAGAACCATACAG+AGG 0.767417 3_2:-78350618 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTGTATATTAGAT+TGG - chr3_2:78349620-78349639 None:intergenic 10.0%
!!! TCTTTATTTTATAATTGAAA+AGG - chr3_2:78351030-78351049 None:intergenic 10.0%
!!! TCTACAATTAAATTGTATTT+TGG - chr3_2:78349347-78349366 None:intergenic 15.0%
!! ATATTTAATTAGAAAAGTCA+CGG + chr3_2:78349567-78349586 Msa0427660:intron 15.0%
!! AAATTTCAAAATCGAAATTT+GGG - chr3_2:78350982-78351001 None:intergenic 15.0%
!! TTATTCACTTAAATATCATA+CGG + chr3_2:78351748-78351767 Msa0427660:intron 15.0%
!! CAAAAAAATTCAAATATGTT+AGG - chr3_2:78352618-78352637 None:intergenic 15.0%
!! AATTTCTTTCTTAGTTTCAA+AGG - chr3_2:78349483-78349502 None:intergenic 20.0%
!! TAATGTGTTCTTATTGTTAA+AGG + chr3_2:78349954-78349973 Msa0427660:intron 20.0%
!! AATATTTGAATAGTTATCTG+AGG - chr3_2:78350120-78350139 None:intergenic 20.0%
!! ATATGTAGACAGTAAATATT+TGG - chr3_2:78350950-78350969 None:intergenic 20.0%
!! CAAATTTCAAAATCGAAATT+TGG - chr3_2:78350983-78351002 None:intergenic 20.0%
!! TATTGAAATTATATCGATGA+AGG - chr3_2:78351666-78351685 None:intergenic 20.0%
!! TCATCGATATAATTTCAATA+TGG + chr3_2:78351666-78351685 Msa0427660:CDS 20.0%
!!! TAATTTGCCCAATTTTTATT+AGG + chr3_2:78351985-78352004 Msa0427660:intron 20.0%
!! GTTACTTCCTAATAAAAATT+GGG - chr3_2:78351995-78352014 None:intergenic 20.0%
!!! TGTTACTTCCTAATAAAAAT+TGG - chr3_2:78351996-78352015 None:intergenic 20.0%
!!! GACTTAAACTAAACAATTTT+TGG + chr3_2:78352637-78352656 Msa0427660:intron 20.0%
! AAAGGTCACAAATTTCTATA+CGG + chr3_2:78348831-78348850 Msa0427660:intron 25.0%
!!! AAATTGTATTTTGGACCTTT+TGG - chr3_2:78349338-78349357 None:intergenic 25.0%
! TCATTAATGAAATCACAACA+TGG + chr3_2:78349457-78349476 Msa0427660:intron 25.0%
! TTAAAAATGTGTCAAAGTGA+AGG + chr3_2:78349666-78349685 Msa0427660:intron 25.0%
! GACACATAATAAGATGAAAA+CGG - chr3_2:78349759-78349778 None:intergenic 25.0%
!!! ACTATATGATTTTAGAGTGA+TGG - chr3_2:78349856-78349875 None:intergenic 25.0%
!! TGAGAAATTTTCTATCAAGA+TGG - chr3_2:78350478-78350497 None:intergenic 25.0%
!! TGAAATATGTTCATCTTTTC+CGG + chr3_2:78350719-78350738 Msa0427660:CDS 25.0%
!! TCAAGAATAGCTTTTCATTT+AGG + chr3_2:78351051-78351070 Msa0427660:intron 25.0%
!! CAAGAATAGCTTTTCATTTA+GGG + chr3_2:78351052-78351071 Msa0427660:intron 25.0%
!! AAGTAACTCATGATTTTTCA+TGG + chr3_2:78351472-78351491 Msa0427660:intron 25.0%
!! ATACATAAGAATAGCCATTT+TGG - chr3_2:78351584-78351603 None:intergenic 25.0%
! CTATTCTTATGTATGTACAT+TGG + chr3_2:78351590-78351609 Msa0427660:CDS 25.0%
! TCGATATAATTTCAATATGG+TGG + chr3_2:78351669-78351688 Msa0427660:CDS 25.0%
! AACAATATTGAGCAATCTTA+TGG - chr3_2:78351729-78351748 None:intergenic 25.0%
!!! GTACATCTTAGAACATTTTT+TGG - chr3_2:78351961-78351980 None:intergenic 25.0%
! CATTTAACTGAAGAAACTAA+AGG + chr3_2:78352222-78352241 Msa0427660:CDS 25.0%
! ATATCTTGAAGATATAGTCA+AGG + chr3_2:78352376-78352395 Msa0427660:intron 25.0%
!!! ATGCTTCAAAACTTATTTTC+AGG - chr3_2:78352437-78352456 None:intergenic 25.0%
! TTCCTAAAAAAAAAACAGCA+AGG - chr3_2:78352550-78352569 None:intergenic 25.0%
!!! GTTTTAATCATAAAGACATG+TGG + chr3_2:78353087-78353106 Msa0427660:intron 25.0%
!! TCTCAAATGAAACAATTTTC+AGG + chr3_2:78353140-78353159 Msa0427660:intron 25.0%
! TTCTTCCATAAGAATGAAAA+TGG - chr3_2:78353195-78353214 None:intergenic 25.0%
! AACTCTTTATCCTATTACAT+GGG + chr3_2:78353500-78353519 Msa0427660:CDS 25.0%
TCATCCAATAGTGGTTAAAA+AGG + chr3_2:78348813-78348832 Msa0427660:intron 30.0%
AAGGTCACAAATTTCTATAC+GGG + chr3_2:78348832-78348851 Msa0427660:intron 30.0%
TAAATACATGGTGTGTATCT+TGG - chr3_2:78349015-78349034 None:intergenic 30.0%
TCTCTTCTGACATAAATACA+TGG - chr3_2:78349027-78349046 None:intergenic 30.0%
GTATTTATGTCAGAAGAGAT+AGG + chr3_2:78349028-78349047 Msa0427660:intron 30.0%
AGAAGAATGCACAACATAAA+TGG + chr3_2:78349130-78349149 Msa0427660:intron 30.0%
! CTATTATTCATGTTTGGCTT+TGG - chr3_2:78349182-78349201 None:intergenic 30.0%
AGGCAACTATTATTCATGTT+TGG - chr3_2:78349188-78349207 None:intergenic 30.0%
AACATGAATAATAGTTGCCT+AGG + chr3_2:78349188-78349207 Msa0427660:intron 30.0%
AACTGGTTGAGAATATATCA+GGG - chr3_2:78349229-78349248 None:intergenic 30.0%
TAACTGGTTGAGAATATATC+AGG - chr3_2:78349230-78349249 None:intergenic 30.0%
! ATTTTGGATGTTCTGATAAC+TGG - chr3_2:78349246-78349265 None:intergenic 30.0%
!! AAGATAGTTCTGATAGAAAC+CGG + chr3_2:78349310-78349329 Msa0427660:intron 30.0%
GTGATTTCATTAATGAACCA+CGG - chr3_2:78349453-78349472 None:intergenic 30.0%
ATTAAGCGACAAAAATGAGT+TGG + chr3_2:78349907-78349926 Msa0427660:intron 30.0%
CTACTATATGTTTCAGTTGA+AGG - chr3_2:78350183-78350202 None:intergenic 30.0%
CTTCAACTGAAACATATAGT+AGG + chr3_2:78350181-78350200 Msa0427660:intron 30.0%
! TAGTTGTTTGTTTCTTCACT+TGG + chr3_2:78350676-78350695 Msa0427660:CDS 30.0%
! ATAGAAGTAGTACTTTTGTC+CGG + chr3_2:78350786-78350805 Msa0427660:intron 30.0%
CAGATAGTAGTAGTACTTTA+AGG + chr3_2:78350883-78350902 Msa0427660:intron 30.0%
!! AGCAGGAACAAAGTATTTTT+AGG - chr3_2:78351090-78351109 None:intergenic 30.0%
CTGTTAGATTGAATCAAAAG+TGG - chr3_2:78351147-78351166 None:intergenic 30.0%
! TAGTTTTTGCAAAATCTCGA+TGG + chr3_2:78351388-78351407 Msa0427660:intron 30.0%
! AACTCATGATTTTTCATGGT+TGG + chr3_2:78351476-78351495 Msa0427660:intron 30.0%
! ATGATTTTTCATGGTTGGAA+AGG + chr3_2:78351481-78351500 Msa0427660:intron 30.0%
TATAATTTCAATATGGTGGC+AGG + chr3_2:78351673-78351692 Msa0427660:CDS 30.0%
ACTTAAATATCATACGGTCA+CGG + chr3_2:78351754-78351773 Msa0427660:intron 30.0%
AACTCATAATATAAGTCGTC+TGG - chr3_2:78351811-78351830 None:intergenic 30.0%
! AATTTTCTGTGTCAGGTTAT+TGG + chr3_2:78352021-78352040 Msa0427660:intron 30.0%
AATGATAGAATCACTGCATA+TGG - chr3_2:78352159-78352178 None:intergenic 30.0%
! ATACTACCAAGTATTGCTAT+GGG - chr3_2:78352264-78352283 None:intergenic 30.0%
! AATACTACCAAGTATTGCTA+TGG - chr3_2:78352265-78352284 None:intergenic 30.0%
! ATAGCAATACTTGGTAGTAT+TGG + chr3_2:78352264-78352283 Msa0427660:CDS 30.0%
ATTGGCATCATTTCAGTATT+TGG + chr3_2:78352282-78352301 Msa0427660:CDS 30.0%
CATCATTTCAGTATTTGGAT+GGG + chr3_2:78352287-78352306 Msa0427660:CDS 30.0%
TTGATACCATCTTAGAACTT+TGG - chr3_2:78352525-78352544 None:intergenic 30.0%
!!! AGCCTTGCTGTTTTTTTTTT+AGG + chr3_2:78352545-78352564 Msa0427660:intron 30.0%
!!! ACTAAACAATTTTTGGCAGA+CGG + chr3_2:78352644-78352663 Msa0427660:intron 30.0%
CCTGAATCAAAGTTGAAAAA+TGG - chr3_2:78352683-78352702 None:intergenic 30.0%
!! CCATTTTTCAACTTTGATTC+AGG + chr3_2:78352680-78352699 Msa0427660:intron 30.0%
! TCAACTTTGATTCAGGATTT+TGG + chr3_2:78352687-78352706 Msa0427660:intron 30.0%
TCTCATTGTTTGGATCATAA+AGG - chr3_2:78352716-78352735 None:intergenic 30.0%
TAGTTCTCCTGTTTATCATT+TGG + chr3_2:78352811-78352830 Msa0427660:intron 30.0%
AGTTCTCCTGTTTATCATTT+GGG + chr3_2:78352812-78352831 Msa0427660:intron 30.0%
! GAGTTCCATTTTCATTCTTA+TGG + chr3_2:78353187-78353206 Msa0427660:CDS 30.0%
ACTACATTCACCTTCAAAAT+TGG - chr3_2:78353291-78353310 None:intergenic 30.0%
ATAACTTCAATAGCCACAAT+TGG + chr3_2:78353321-78353340 Msa0427660:CDS 30.0%
AGAAATGCTATCAAGCAAAT+TGG - chr3_2:78353444-78353463 None:intergenic 30.0%
! TTTGCTTGATAGCATTTCTA+TGG + chr3_2:78353445-78353464 Msa0427660:CDS 30.0%
CATGTAATAGGATAAAGAGT+TGG - chr3_2:78353501-78353520 None:intergenic 30.0%
CAACTCTTTATCCTATTACA+TGG + chr3_2:78353499-78353518 Msa0427660:CDS 30.0%
!! TTGAAAGTATCCCATGTAAT+AGG - chr3_2:78353513-78353532 None:intergenic 30.0%
AGATGCAAGAAAATGGTTTA+AGG + chr3_2:78353590-78353609 Msa0427660:CDS 30.0%
GATGCAAGAAAATGGTTTAA+GGG + chr3_2:78353591-78353610 Msa0427660:CDS 30.0%
ATGCAAGAAAATGGTTTAAG+GGG + chr3_2:78353592-78353611 Msa0427660:CDS 30.0%
! GTGACCTTTTTAACCACTAT+TGG - chr3_2:78348820-78348839 None:intergenic 35.0%
AGGTCACAAATTTCTATACG+GGG + chr3_2:78348833-78348852 Msa0427660:intron 35.0%
ATAAGCCAAATCTTACAAGC+CGG - chr3_2:78348872-78348891 None:intergenic 35.0%
CTTATCTTAAGTGAACAGAG+AGG + chr3_2:78348887-78348906 Msa0427660:intron 35.0%
ACATAAATGGCCATCATAGT+TGG + chr3_2:78349143-78349162 Msa0427660:intron 35.0%
TGAATAATAGTTGCCTAGGA+AGG + chr3_2:78349192-78349211 Msa0427660:intron 35.0%
TTGAGAATATATCAGGGTAC+AGG - chr3_2:78349223-78349242 None:intergenic 35.0%
TCAGAACATCCAAAATGCAA+CGG + chr3_2:78349250-78349269 Msa0427660:intron 35.0%
!! TATTTTGGACCTTTTGGTAC+CGG - chr3_2:78349332-78349351 None:intergenic 35.0%
TACGCTATGACCTATAATGA+TGG + chr3_2:78349415-78349434 Msa0427660:intron 35.0%
! GACCTATAATGATGGAGAAA+TGG + chr3_2:78349423-78349442 Msa0427660:intron 35.0%
GACCATTTCTCCATCATTAT+AGG - chr3_2:78349428-78349447 None:intergenic 35.0%
TCTATCTGACCTACTATCAT+GGG - chr3_2:78349593-78349612 None:intergenic 35.0%
TTCTATCTGACCTACTATCA+TGG - chr3_2:78349594-78349613 None:intergenic 35.0%
AACGGAATTTAACAAACCTG+CGG - chr3_2:78349741-78349760 None:intergenic 35.0%
TTGGCAAATTCAGTTGAATG+TGG - chr3_2:78349781-78349800 None:intergenic 35.0%
! TGTGCTTGACTTTTCTTTGT+TGG - chr3_2:78349800-78349819 None:intergenic 35.0%
AAGTGAAACCAAAGCAGAAA+AGG + chr3_2:78350002-78350021 Msa0427660:intron 35.0%
TCAGTTGAAGGATTCAAACT+TGG - chr3_2:78350171-78350190 None:intergenic 35.0%
AGTGACAGAAAACATAGCTA+TGG + chr3_2:78350378-78350397 Msa0427660:CDS 35.0%
GCAAGAACTAAGAAGAGAAA+TGG + chr3_2:78350438-78350457 Msa0427660:CDS 35.0%
!! TGTTTCTTCACTTGGTTTGT+TGG + chr3_2:78350684-78350703 Msa0427660:CDS 35.0%
!! GTTTCTTCACTTGGTTTGTT+GGG + chr3_2:78350685-78350704 Msa0427660:CDS 35.0%
CATGCATAAAAGAGACAAAC+CGG - chr3_2:78350741-78350760 None:intergenic 35.0%
GGTCAAACTTTGGATTATCA+GGG - chr3_2:78350827-78350846 None:intergenic 35.0%
TGGTCAAACTTTGGATTATC+AGG - chr3_2:78350828-78350847 None:intergenic 35.0%
TAATCCAAAGTTTGACCATG+AGG + chr3_2:78350830-78350849 Msa0427660:intron 35.0%
TTTACCTCATGGTCAAACTT+TGG - chr3_2:78350837-78350856 None:intergenic 35.0%
GATTCAATCTAACAGACAAC+TGG + chr3_2:78351152-78351171 Msa0427660:intron 35.0%
!! AACTGGTTCTCTGTACTTTT+GGG + chr3_2:78351169-78351188 Msa0427660:CDS 35.0%
GGTTAAACTTCGTGTATGTT+TGG + chr3_2:78351300-78351319 Msa0427660:intron 35.0%
AACTTCGTGTATGTTTGGAT+TGG + chr3_2:78351305-78351324 Msa0427660:intron 35.0%
! GGTGGGTTTGATAAAAATCA+CGG + chr3_2:78351329-78351348 Msa0427660:intron 35.0%
GAAAACACTGAGTACATGTT+TGG - chr3_2:78351434-78351453 None:intergenic 35.0%
AGTTTAATCCTACTCTCAAC+AGG + chr3_2:78351530-78351549 Msa0427660:CDS 35.0%
TAATATAAGTCGTCTGGTCT+TGG - chr3_2:78351805-78351824 None:intergenic 35.0%
GAATTAGCATCTGATACAAC+AGG + chr3_2:78352120-78352139 Msa0427660:CDS 35.0%
GCATCATTTCAGTATTTGGA+TGG + chr3_2:78352286-78352305 Msa0427660:CDS 35.0%
ACGAACACTTAGTCTCATAA+TGG + chr3_2:78352400-78352419 Msa0427660:intron 35.0%
TACCATCTTAGAACTTTGGT+TGG - chr3_2:78352521-78352540 None:intergenic 35.0%
!!! CTAAACAATTTTTGGCAGAC+GGG + chr3_2:78352645-78352664 Msa0427660:intron 35.0%
ATACTCTATGATGCATTCCA+TGG + chr3_2:78352762-78352781 Msa0427660:CDS 35.0%
CAGAATTGTGATATCTTCCA+TGG - chr3_2:78352782-78352801 None:intergenic 35.0%
GTTCTCCTGTTTATCATTTG+GGG + chr3_2:78352813-78352832 Msa0427660:intron 35.0%
ATGAACCCCAAATGATAAAC+AGG - chr3_2:78352821-78352840 None:intergenic 35.0%
! ATTTGGGGTTCATTCTTCTT+TGG + chr3_2:78352828-78352847 Msa0427660:intron 35.0%
TGGTAAGTACTAAACCTGTT+TGG + chr3_2:78352883-78352902 Msa0427660:intron 35.0%
GGTAAGTACTAAACCTGTTT+GGG + chr3_2:78352884-78352903 Msa0427660:intron 35.0%
! GTTTTGCAACTCGAATGAAT+CGG - chr3_2:78352910-78352929 None:intergenic 35.0%
!! CTTATTTCTATAAGCTCTCC+AGG + chr3_2:78352974-78352993 Msa0427660:intron 35.0%
! TCTGTTTTCATAAGCTATCC+TGG - chr3_2:78352995-78353014 None:intergenic 35.0%
! TTTGTAGGAACCTTGTGTTT+TGG - chr3_2:78353225-78353244 None:intergenic 35.0%
! TCTTGGTCTACCAATTTTGA+AGG + chr3_2:78353278-78353297 Msa0427660:CDS 35.0%
TTCAATAGCCACAATTGGAT+GGG + chr3_2:78353326-78353345 Msa0427660:CDS 35.0%
AGTTCCAATCTTTGCAAGAA+TGG + chr3_2:78353362-78353381 Msa0427660:CDS 35.0%
ATCACCATTCTTGCAAAGAT+TGG - chr3_2:78353369-78353388 None:intergenic 35.0%
!! AAGCCTGGACCTTTTTATTT+GGG + chr3_2:78353405-78353424 Msa0427660:CDS 35.0%
!! AATTATGCACCTGTTGCTTT+AGG + chr3_2:78353531-78353550 Msa0427660:CDS 35.0%
!! ATTATGCACCTGTTGCTTTA+GGG + chr3_2:78353532-78353551 Msa0427660:CDS 35.0%
GTTTGGGTCTAATAATGCTT+TGG + chr3_2:78353559-78353578 Msa0427660:CDS 35.0%
GGGTATTAGATGCAAGAAAA+TGG + chr3_2:78353583-78353602 Msa0427660:CDS 35.0%
GACCAAAGTTCCAACTATGA+TGG - chr3_2:78349156-78349175 None:intergenic 40.0%
TCATAGTTGGAACTTTGGTC+TGG + chr3_2:78349156-78349175 Msa0427660:intron 40.0%
TGATAGAAACCGGTACCAAA+AGG + chr3_2:78349320-78349339 Msa0427660:intron 40.0%
GAGGATATCTTTGACATGTC+AGG - chr3_2:78349708-78349727 None:intergenic 40.0%
! TACTTGCTCCTTTTCTGCTT+TGG - chr3_2:78350013-78350032 None:intergenic 40.0%
!! ATCTGAGGCAGTATTTTCTC+AGG - chr3_2:78350105-78350124 None:intergenic 40.0%
TCAACAGAACCCTTGTTACA+TGG + chr3_2:78350330-78350349 Msa0427660:CDS 40.0%
CAACAGAACCCTTGTTACAT+GGG + chr3_2:78350331-78350350 Msa0427660:CDS 40.0%
AACAGAACCCTTGTTACATG+GGG + chr3_2:78350332-78350351 Msa0427660:CDS 40.0%
TTTCAGTCCCCATGTAACAA+GGG - chr3_2:78350342-78350361 None:intergenic 40.0%
!!! GACTGAAACCAGTTTTGTTC+CGG + chr3_2:78350354-78350373 Msa0427660:CDS 40.0%
!! GCTATGTTTTCTGTCACTTC+CGG - chr3_2:78350376-78350395 None:intergenic 40.0%
GAGAAGAGACTAAATGAGCT+TGG + chr3_2:78350409-78350428 Msa0427660:CDS 40.0%
! TCAACAATGACGCTTTTCAC+TGG + chr3_2:78350588-78350607 Msa0427660:CDS 40.0%
!! TTGGTTTGTTGGGATTGCAA+TGG + chr3_2:78350695-78350714 Msa0427660:CDS 40.0%
ATTATCAGGGTTCCATTCTC+AGG - chr3_2:78350814-78350833 None:intergenic 40.0%
TAGAACAGTCGTTTACCTCA+TGG - chr3_2:78350848-78350867 None:intergenic 40.0%
!! CAACTGGTTCTCTGTACTTT+TGG + chr3_2:78351168-78351187 Msa0427660:CDS 40.0%
ACATTTAGCTGGTCCGAAAT+GGG + chr3_2:78351196-78351215 Msa0427660:CDS 40.0%
GAAGAAAATGGTCCCCATTT+CGG - chr3_2:78351212-78351231 None:intergenic 40.0%
! AATGGGGACCATTTTCTTCA+TGG + chr3_2:78351213-78351232 Msa0427660:CDS 40.0%
GCACAACACCATGAAGAAAA+TGG - chr3_2:78351224-78351243 None:intergenic 40.0%
!! TTTCTTCATGGTGTTGTGCT+TGG + chr3_2:78351225-78351244 Msa0427660:CDS 40.0%
!! GTAGGTCTTATTGCTGGAAT+CGG + chr3_2:78351257-78351276 Msa0427660:intron 40.0%
! TTCGTGTATGTTTGGATTGG+TGG + chr3_2:78351308-78351327 Msa0427660:intron 40.0%
!! TGTATGTTTGGATTGGTGGT+GGG + chr3_2:78351312-78351331 Msa0427660:intron 40.0%
GGGTTTGATAAAAATCACGG+TGG + chr3_2:78351332-78351351 Msa0427660:intron 40.0%
GCAAAATCTCGATGGTTCAT+CGG + chr3_2:78351396-78351415 Msa0427660:intron 40.0%
CAAAATCTCGATGGTTCATC+GGG + chr3_2:78351397-78351416 Msa0427660:intron 40.0%
TATTTGTGCCTGTTGAGAGT+AGG - chr3_2:78351541-78351560 None:intergenic 40.0%
CTCTCAACAGGCACAAATAA+AGG + chr3_2:78351542-78351561 Msa0427660:CDS 40.0%
TCAACAGGCACAAATAAAGG+CGG + chr3_2:78351545-78351564 Msa0427660:CDS 40.0%
! ACATTGGCCTCACTGTTATA+TGG + chr3_2:78351606-78351625 Msa0427660:CDS 40.0%
! CATTGGCCTCACTGTTATAT+GGG + chr3_2:78351607-78351626 Msa0427660:CDS 40.0%
GAGCAATCTTATGGCAGTTA+TGG - chr3_2:78351720-78351739 None:intergenic 40.0%
GGGAGCAATTAGATAAGGAT+CGG - chr3_2:78351875-78351894 None:intergenic 40.0%
CAAGTGGGAGCAATTAGATA+AGG - chr3_2:78351880-78351899 None:intergenic 40.0%
! CACACTCAATTTTCTGTGTC+AGG + chr3_2:78352014-78352033 Msa0427660:intron 40.0%
TTTCTGTGTCAGGTTATTGG+TGG + chr3_2:78352024-78352043 Msa0427660:intron 40.0%
GATAGTGATACTGTTACCTC+TGG + chr3_2:78352053-78352072 Msa0427660:CDS 40.0%
CATATCCATAGAGGGAATAC+TGG - chr3_2:78352191-78352210 None:intergenic 40.0%
TGCAGCATCATATCCATAGA+GGG - chr3_2:78352199-78352218 None:intergenic 40.0%
! ACTAAAGGTGCAGACAAGAA+TGG + chr3_2:78352237-78352256 Msa0427660:CDS 40.0%
AATGGACCCATAGCAATACT+TGG + chr3_2:78352255-78352274 Msa0427660:CDS 40.0%
! ATTTGGATGGGCTTACATCT+TGG + chr3_2:78352299-78352318 Msa0427660:CDS 40.0%
!! TAGAACTTTGGTTGGCCTAA+TGG - chr3_2:78352513-78352532 None:intergenic 40.0%
! GCATCATAGAGTATTTGTGC+TGG - chr3_2:78352756-78352775 None:intergenic 40.0%
GGAAGATATCACAATTCTGC+TGG + chr3_2:78352783-78352802 Msa0427660:CDS 40.0%
TTTAGTACTTACCACTCTGG+CGG - chr3_2:78352877-78352896 None:intergenic 40.0%
AGGTTTAGTACTTACCACTC+TGG - chr3_2:78352880-78352899 None:intergenic 40.0%
AAAATGCCTCCTAACTAGTG+TGG + chr3_2:78353113-78353132 Msa0427660:intron 40.0%
TGAGATACACCACACTAGTT+AGG - chr3_2:78353125-78353144 None:intergenic 40.0%
GAAACTGCATCCAAAACACA+AGG + chr3_2:78353212-78353231 Msa0427660:CDS 40.0%
AGGTTCCTACAAATGCTGTA+TGG + chr3_2:78353232-78353251 Msa0427660:CDS 40.0%
CTTCAATAGCCACAATTGGA+TGG + chr3_2:78353325-78353344 Msa0427660:CDS 40.0%
! CAAGCCTGGACCTTTTTATT+TGG + chr3_2:78353404-78353423 Msa0427660:CDS 40.0%
TTGCCCAAATAAAAAGGTCC+AGG - chr3_2:78353411-78353430 None:intergenic 40.0%
!! TGGACCTTTTTATTTGGGCA+AGG + chr3_2:78353410-78353429 Msa0427660:CDS 40.0%
CTTGCCTTGCCCAAATAAAA+AGG - chr3_2:78353417-78353436 None:intergenic 40.0%
TAGGATAAAGAGTTGGCAAC+AGG - chr3_2:78353494-78353513 None:intergenic 40.0%
!! TTATGCACCTGTTGCTTTAG+GGG + chr3_2:78353533-78353552 Msa0427660:CDS 40.0%
TGGGTCTAATAATGCTTTGG+TGG + chr3_2:78353562-78353581 Msa0427660:CDS 40.0%
GGGTCTAATAATGCTTTGGT+GGG + chr3_2:78353563-78353582 Msa0427660:CDS 40.0%
TGAGCATCAATGTTCCTAAC+TGG - chr3_2:78353618-78353637 None:intergenic 40.0%
! TTCTATACGGGGCTTTTGCA+AGG + chr3_2:78348844-78348863 Msa0427660:intron 45.0%
GAAGAGATAGGTCAGCATCA+AGG + chr3_2:78349040-78349059 Msa0427660:intron 45.0%
! GCTCTGCTGCATCTTTTTCT+TGG - chr3_2:78349068-78349087 None:intergenic 45.0%
GGCCATCATAGTTGGAACTT+TGG + chr3_2:78349151-78349170 Msa0427660:intron 45.0%
GGTACAGGATTATCCTTCCT+AGG - chr3_2:78349208-78349227 None:intergenic 45.0%
! GCTGTTGTTCCGTTGCATTT+TGG - chr3_2:78349262-78349281 None:intergenic 45.0%
ATCCTCACTACTTATACCGC+AGG + chr3_2:78349722-78349741 Msa0427660:intron 45.0%
AACCTGCGGTATAAGTAGTG+AGG - chr3_2:78349727-78349746 None:intergenic 45.0%
GTTTCAGTCCCCATGTAACA+AGG - chr3_2:78350343-78350362 None:intergenic 45.0%
! TGTCACTTCCGGAACAAAAC+TGG - chr3_2:78350365-78350384 None:intergenic 45.0%
ACTGGAATCACACCTCTGTA+TGG + chr3_2:78350606-78350625 Msa0427660:CDS 45.0%
AGAAGGCTAGAACCATACAG+AGG - chr3_2:78350621-78350640 None:intergenic 45.0%
ATCCCCAAACAAGACTTGCA+GGG - chr3_2:78350653-78350672 None:intergenic 45.0%
!! TGCAAGTCTTGTTTGGGGAT+GGG + chr3_2:78350653-78350672 Msa0427660:CDS 45.0%
! TTTTGTCCGGTTCCTGAGAA+TGG + chr3_2:78350799-78350818 Msa0427660:intron 45.0%
GGTAAACGACTGTTCTAGTC+AGG + chr3_2:78350851-78350870 Msa0427660:intron 45.0%
!! TTCACTGATTCATGTGCAGC+AGG - chr3_2:78351107-78351126 None:intergenic 45.0%
! TTTTGGGCTGCACATTTAGC+TGG + chr3_2:78351185-78351204 Msa0427660:CDS 45.0%
CACATTTAGCTGGTCCGAAA+TGG + chr3_2:78351195-78351214 Msa0427660:CDS 45.0%
CATTTAGCTGGTCCGAAATG+GGG + chr3_2:78351197-78351216 Msa0427660:CDS 45.0%
!! GAGACTGTAGGTCTTATTGC+TGG + chr3_2:78351251-78351270 Msa0427660:intron 45.0%
TATTGCTGGAATCGGTACTC+AGG + chr3_2:78351265-78351284 Msa0427660:intron 45.0%
! GTACTCAGGTAAGTGGACTT+TGG + chr3_2:78351279-78351298 Msa0427660:intron 45.0%
!! GTGTATGTTTGGATTGGTGG+TGG + chr3_2:78351311-78351330 Msa0427660:intron 45.0%
!! GAGGGTACTTTGCTCCAAAA+TGG + chr3_2:78351567-78351586 Msa0427660:CDS 45.0%
ATGCTGCCCATATAACAGTG+AGG - chr3_2:78351616-78351635 None:intergenic 45.0%
! GTTCAACGGTTCTGATTGAC+TGG - chr3_2:78351783-78351802 None:intergenic 45.0%
! TTGCTCCCACTTGCTGATAA+CGG + chr3_2:78351887-78351906 Msa0427660:intron 45.0%
CTTCACCGTTATCAGCAAGT+GGG - chr3_2:78351895-78351914 None:intergenic 45.0%
ACTTCACCGTTATCAGCAAG+TGG - chr3_2:78351896-78351915 None:intergenic 45.0%
!! TTGCTGATAACGGTGAAGTG+TGG + chr3_2:78351897-78351916 Msa0427660:intron 45.0%
AGTGATACTGTTACCTCTGG+TGG + chr3_2:78352056-78352075 Msa0427660:CDS 45.0%
TGTTTAGTTAGTGCCACCAG+AGG - chr3_2:78352072-78352091 None:intergenic 45.0%
CTGCAGCATCATATCCATAG+AGG - chr3_2:78352200-78352219 None:intergenic 45.0%
GGCACTTACATTCAGCATTC+AGG + chr3_2:78352320-78352339 Msa0427660:CDS 45.0%
GTGGCTCAATGAATCTTGCA+TGG - chr3_2:78352472-78352491 None:intergenic 45.0%
!! GGCCAACCAAAGTTCTAAGA+TGG + chr3_2:78352516-78352535 Msa0427660:intron 45.0%
GATCCAAACAATGAGACAGC+TGG + chr3_2:78352720-78352739 Msa0427660:CDS 45.0%
TGGGGTTCATTCTTCTTTGG+TGG + chr3_2:78352831-78352850 Msa0427660:intron 45.0%
GATACACCACACTAGTTAGG+AGG - chr3_2:78353122-78353141 None:intergenic 45.0%
TATGCCCTGTCAAGGGATAA+GGG + chr3_2:78353165-78353184 Msa0427660:CDS 45.0%
AACTCCCTTATCCCTTGACA+GGG - chr3_2:78353172-78353191 None:intergenic 45.0%
CAGAGCCATACAGCATTTGT+AGG - chr3_2:78353240-78353259 None:intergenic 45.0%
GCAGCAATCTGCATTCTTCT+TGG + chr3_2:78353261-78353280 Msa0427660:CDS 45.0%
ATAGCCACAATTGGATGGGT+TGG + chr3_2:78353330-78353349 Msa0427660:CDS 45.0%
AATGGTTTAAGGGGCCAGTT+AGG + chr3_2:78353601-78353620 Msa0427660:CDS 45.0%
!! AGGCACCGGCTTGTAAGATT+TGG + chr3_2:78348864-78348883 Msa0427660:intron 50.0%
GATGGAGAAATGGTCAACCG+TGG + chr3_2:78349433-78349452 Msa0427660:intron 50.0%
AAGTCACGGCCCATGATAGT+AGG + chr3_2:78349581-78349600 Msa0427660:intron 50.0%
GTGAGTGACGCATTCATGTG+TGG + chr3_2:78350070-78350089 Msa0427660:intron 50.0%
! GGTTCTAGCCTTCTGTATGC+AGG + chr3_2:78350627-78350646 Msa0427660:CDS 50.0%
!! AGGCCCTGCAAGTCTTGTTT+GGG + chr3_2:78350647-78350666 Msa0427660:CDS 50.0%
CATCCCCAAACAAGACTTGC+AGG - chr3_2:78350654-78350673 None:intergenic 50.0%
!! CTGCAAGTCTTGTTTGGGGA+TGG + chr3_2:78350652-78350671 Msa0427660:CDS 50.0%
AGGGTTCCATTCTCAGGAAC+CGG - chr3_2:78350808-78350827 None:intergenic 50.0%
! TGTGCTTGGCTTGAGACTGT+AGG + chr3_2:78351239-78351258 Msa0427660:intron 50.0%
GGAATCGGTACTCAGGTAAG+TGG + chr3_2:78351272-78351291 Msa0427660:intron 50.0%
! ATGGTTGGAAAGGCGTATGC+AGG + chr3_2:78351491-78351510 Msa0427660:intron 50.0%
ACAGGCACAAATAAAGGCGG+AGG + chr3_2:78351548-78351567 Msa0427660:CDS 50.0%
CAGGCACAAATAAAGGCGGA+GGG + chr3_2:78351549-78351568 Msa0427660:CDS 50.0%
!! GTCGTCTGGTCTTGGTTCAA+CGG - chr3_2:78351797-78351816 None:intergenic 50.0%
AAGTGTGGTATCGTGACTGC+AGG + chr3_2:78351912-78351931 Msa0427660:intron 50.0%
GTGAGCCAGTATTCCCTCTA+TGG + chr3_2:78352183-78352202 Msa0427660:intron 50.0%
GCAAGTGACTCGATGCTATG+TGG - chr3_2:78352491-78352510 None:intergenic 50.0%
GCATCGAGTCACTTGCCATT+AGG + chr3_2:78352495-78352514 Msa0427660:intron 50.0%
GCTCCAGCTGTCTCATTGTT+TGG - chr3_2:78352726-78352745 None:intergenic 50.0%
TCGAATGAATCGGCCCAAAC+AGG - chr3_2:78352900-78352919 None:intergenic 50.0%
TTCAGGTCTATGCCCTGTCA+AGG + chr3_2:78353157-78353176 Msa0427660:intron 50.0%
TCAGGTCTATGCCCTGTCAA+GGG + chr3_2:78353158-78353177 Msa0427660:intron 50.0%
CTATGCCCTGTCAAGGGATA+AGG + chr3_2:78353164-78353183 Msa0427660:CDS 50.0%
GAACTCCCTTATCCCTTGAC+AGG - chr3_2:78353173-78353192 None:intergenic 50.0%
ACCACCAACCCATCCAATTG+TGG - chr3_2:78353337-78353356 None:intergenic 50.0%
CCAGGCTTGAAGTTCTTCTC+AGG - chr3_2:78353393-78353412 None:intergenic 50.0%
CCTGAGAAGAACTTCAAGCC+TGG + chr3_2:78353390-78353409 Msa0427660:CDS 50.0%
AAACCGACCCCTAAAGCAAC+AGG - chr3_2:78353543-78353562 None:intergenic 50.0%
!! TGTTGCTTTAGGGGTCGGTT+TGG + chr3_2:78353542-78353561 Msa0427660:CDS 50.0%
!! GTTGCTTTAGGGGTCGGTTT+GGG + chr3_2:78353543-78353562 Msa0427660:CDS 50.0%
TTGCAGGGCCTGCATACAGA+AGG - chr3_2:78350638-78350657 None:intergenic 55.0%
!! CAGGCCCTGCAAGTCTTGTT+TGG + chr3_2:78350646-78350665 Msa0427660:CDS 55.0%
!! GGCCCTGCAAGTCTTGTTTG+GGG + chr3_2:78350648-78350667 Msa0427660:CDS 55.0%
!! GCCACAATTGGATGGGTTGG+TGG + chr3_2:78353333-78353352 Msa0427660:CDS 55.0%
!! GCACCTGTTGCTTTAGGGGT+CGG + chr3_2:78353537-78353556 Msa0427660:CDS 55.0%
! ACGGGGCTTTTGCAAGGCAC+CGG + chr3_2:78348850-78348869 Msa0427660:intron 60.0%
! CACTACAAGTGCCGCCAGAG+TGG + chr3_2:78352863-78352882 Msa0427660:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78348807 78353653 78348807 ID=Msa0427660;Name=Msa0427660
chr3_2 mRNA 78348807 78353653 78348807 ID=Msa0427660-mRNA-1;Parent=Msa0427660;Name=Msa0427660-mRNA-1;_AED=0.23;_eAED=0.24;_QI=0|0|0|1|0.62|0.55|9|0|509
chr3_2 exon 78348807 78348825 78348807 ID=Msa0427660-mRNA-1:exon:20700;Parent=Msa0427660-mRNA-1
chr3_2 exon 78350314 78350459 78350314 ID=Msa0427660-mRNA-1:exon:20701;Parent=Msa0427660-mRNA-1
chr3_2 exon 78350558 78350740 78350558 ID=Msa0427660-mRNA-1:exon:20702;Parent=Msa0427660-mRNA-1
chr3_2 exon 78351167 78351256 78351167 ID=Msa0427660-mRNA-1:exon:20703;Parent=Msa0427660-mRNA-1
chr3_2 exon 78351503 78351694 78351503 ID=Msa0427660-mRNA-1:exon:20704;Parent=Msa0427660-mRNA-1
chr3_2 exon 78352036 78352182 78352036 ID=Msa0427660-mRNA-1:exon:20705;Parent=Msa0427660-mRNA-1
chr3_2 exon 78352192 78352341 78352192 ID=Msa0427660-mRNA-1:exon:20706;Parent=Msa0427660-mRNA-1
chr3_2 exon 78352702 78352812 78352702 ID=Msa0427660-mRNA-1:exon:20707;Parent=Msa0427660-mRNA-1
chr3_2 exon 78353162 78353653 78353162 ID=Msa0427660-mRNA-1:exon:20708;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78348807 78348825 78348807 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78350314 78350459 78350314 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78350558 78350740 78350558 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78351167 78351256 78351167 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78351503 78351694 78351503 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78352036 78352182 78352036 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78352192 78352341 78352192 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78352702 78352812 78352702 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
chr3_2 CDS 78353162 78353653 78353162 ID=Msa0427660-mRNA-1:cds;Parent=Msa0427660-mRNA-1
Gene Sequence

>Msa0427660

ATGAATTCATCCAATAGTGATTACGTAAGAACTTCTCAACAGAACCCTTGTTACATGGGGACTGAAACCAGTTTTGTTCCGGAAGTGACAGAAAACATAGCTATGGATTCAGCAGAGAAGAGACTAAATGAGCTTGGTTACAAGCAAGAACTAAGAAGAGAAATGACTATGTTCAAAACTCTTGCGATAGCATTTTCAACAATGACGCTTTTCACTGGAATCACACCTCTGTATGGTTCTAGCCTTCTGTATGCAGGCCCTGCAAGTCTTGTTTGGGGATGGGTAGTTGTTTGTTTCTTCACTTGGTTTGTTGGGATTGCAATGGCTGAAATATGTTCATCTTTTCCGACAACTGGTTCTCTGTACTTTTGGGCTGCACATTTAGCTGGTCCGAAATGGGGACCATTTTCTTCATGGTGTTGTGCTTGGCTTGAGACTGCGTATGCAGGATCACAAACATTGCAGAGTTTAATCCTACTCTCAACAGGCACAAATAAAGGCGGAGGGTACTTTGCTCCAAAATGGCTATTCTTATGTATGTACATTGGCCTCACTGTTATATGGGCAGCATTAAACACATTTGCATTAGAAGTCATTGCCTTCATCGATATAATTTCAATATGGTGGCAGGTTATTGGTGGAGCAGTGATAGTGATACTGTTACCTCTGGTGGCACTAACTAAACAATCAGCTACATATGTATTCACAAACTTTGAATTAGCATCTGATACAACAGGAGTTTCAAGCAAACCATATGCAGTGATTCTATCATTTCTTTATTCCCTCTATGGATATGATGCTGCAGCACATTTAACTGAAGAAACTAAAGGTGCAGACAAGAATGGACCCATAGCAATACTTGGTAGTATTGGCATCATTTCAGTATTTGGATGGGCTTACATCTTGGCACTTACATTCAGCATTCAGGATTTTGGTTACCTTTATGATCCAAACAATGAGACAGCTGGAGCATTTGTGCCAGCACAAATACTCTATGATGCATTCCATGGAAGATATCACAATTCTGCTGGAGCAATAGTCTATGCCCTGTCAAGGGATAAGGGAGTTCCATTTTCATTCTTATGGAAGAAACTGCATCCAAAACACAAGGTTCCTACAAATGCTGTATGGCTCTGTGCAGCAATCTGCATTCTTCTTGGTCTACCAATTTTGAAGGTGAATGTAGTCTTTACTGCAATAACTTCAATAGCCACAATTGGATGGGTTGGTGGTTATGCAGTTCCAATCTTTGCAAGAATGGTGATGCCTGAGAAGAACTTCAAGCCTGGACCTTTTTATTTGGGCAAGGCAAGCAGACCAATTTGCTTGATAGCATTTCTATGGATTTGTTACACATGTTCTGTATTCCTGTTGCCAACTCTTTATCCTATTACATGGGATACTTTCAATTATGCACCTGTTGCTTTAGGGGTCGGTTTGGGTCTAATAATGCTTTGGTGGGTATTAGATGCAAGAAAATGGTTTAAGGGGCCAGTTAGGAACATTGATGCTCAAAATGACAAAGTATAA

Protein sequence

>Msa0427660

MNSSNSDYVRTSQQNPCYMGTETSFVPEVTENIAMDSAEKRLNELGYKQELRREMTMFKTLAIAFSTMTLFTGITPLYGSSLLYAGPASLVWGWVVVCFFTWFVGIAMAEICSSFPTTGSLYFWAAHLAGPKWGPFSSWCCAWLETAYAGSQTLQSLILLSTGTNKGGGYFAPKWLFLCMYIGLTVIWAALNTFALEVIAFIDIISIWWQVIGGAVIVILLPLVALTKQSATYVFTNFELASDTTGVSSKPYAVILSFLYSLYGYDAAAHLTEETKGADKNGPIAILGSIGIISVFGWAYILALTFSIQDFGYLYDPNNETAGAFVPAQILYDAFHGRYHNSAGAIVYALSRDKGVPFSFLWKKLHPKHKVPTNAVWLCAAICILLGLPILKVNVVFTAITSIATIGWVGGYAVPIFARMVMPEKNFKPGPFYLGKASRPICLIAFLWICYTCSVFLLPTLYPITWDTFNYAPVALGVGLGLIMLWWVLDARKWFKGPVRNIDAQNDKV*