AlfalfaGEDB | Msa1003920

M. sativa cultivar zhongmu-4 / Msa1003920

KEGG: -
GO: -
PFAM: PF04564.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003920	XP_003621006.1	91.982	1110	52	2	1	1110	1	1073	0.0	2038

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003920	sp\|C6L7U1\|LIN1_LOTJA	28.286	350	241	8	684	1031	802	1143	1.51e-25	118
Msa1003920	sp\|C6L7U1\|LIN1_LOTJA	48.101	79	41	0	597	675	512	590	8.65e-19	96.7
Msa1003920	sp\|C6L7U1\|LIN1_LOTJA	24.066	241	142	5	200	405	15	249	2.88e-11	72.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003920	A2Q2S4	91.982	1110	52	2	1	1110	1	1073	0.0	2038

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa1003920	0.844502	7.266653e-59	-8.615850e-47
Msa0002690	Msa1003920	-0.811803	5.832424e-51	-8.615850e-47
Msa0002700	Msa1003920	-0.811659	6.268414e-51	-8.615850e-47
Msa0004180	Msa1003920	-0.826390	2.785005e-54	-8.615850e-47
Msa0004940	Msa1003920	0.811602	6.449583e-51	-8.615850e-47
Msa0004990	Msa1003920	0.808310	3.298293e-50	-8.615850e-47
Msa0010150	Msa1003920	0.805829	1.105025e-49	-8.615850e-47
Msa0011010	Msa1003920	0.803309	3.706707e-49	-8.615850e-47
Msa0011410	Msa1003920	-0.843317	1.509107e-58	-8.615850e-47
Msa0011440	Msa1003920	-0.830329	3.121662e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003920	MtrunA17_Chr7g0214471	91.982	1110	52	2	1	1110	1	1073	0.0	2038
Msa1003920	MtrunA17_Chr4g0043451	41.778	225	121	6	195	410	98	321	5.39e-43	160
Msa1003920	MtrunA17_Chr2g0291731	31.124	347	231	4	693	1036	566	907	2.71e-34	142
Msa1003920	MtrunA17_Chr2g0291731	35.448	268	137	9	165	422	41	282	2.61e-32	136
Msa1003920	MtrunA17_Chr1g0196911	28.571	399	252	13	638	1031	769	1139	8.42e-25	112
Msa1003920	MtrunA17_Chr1g0196911	36.667	120	76	0	597	716	507	626	6.89e-21	99.8
Msa1003920	MtrunA17_Chr1g0196911	26.141	241	137	5	200	405	8	242	3.83e-14	77.8
Msa1003920	MtrunA17_Chr8g0390311	52.000	75	36	0	590	664	389	463	4.64e-20	97.1
Msa1003920	MtrunA17_Chr8g0390311	25.731	342	244	7	693	1031	658	992	2.37e-16	84.7
Msa1003920	MtrunA17_Chr7g0275961	30.675	163	104	3	598	760	257	410	1.88e-15	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003920	AT1G76390.1	38.095	105	52	4	586	683	20	118	2.16e-12	72.0
Msa1003920	AT1G76390.2	38.095	105	52	4	586	683	20	118	2.16e-12	72.0
Msa1003920	AT1G68940.2	26.619	278	146	12	565	804	265	522	6.16e-12	70.9
Msa1003920	AT1G68940.3	26.619	278	146	12	565	804	212	469	6.87e-12	70.5
Msa1003920	AT1G68940.1	26.619	278	146	12	565	804	265	522	6.93e-12	70.5
Msa1003920	AT5G42340.1	40.000	80	47	1	584	663	278	356	9.01e-12	69.7
Msa1003920	AT1G49780.1	43.478	69	36	2	596	663	14	80	2.93e-11	67.4
Msa1003920	AT3G07360.1	40.580	69	40	1	595	663	73	140	3.89e-11	67.4
Msa1003920	AT1G20780.1	37.895	95	51	3	596	683	23	116	4.00e-11	67.8
Msa1003920	AT1G20780.2	37.895	95	51	3	596	683	23	116	4.00e-11	67.8

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Find 156 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTATGATTCTTTCTT+TGG	0.229672	7_1:-989136	Msa1003920:CDS
AAAGAAAAGAAGGAACAATT+GGG	0.435116	7_1:-990311	Msa1003920:CDS
AAAGAAAAGCCATCAAGGCA+TGG	0.569716	7_1:-988362	Msa1003920:CDS
AAAGAGAAGAATTCCAGAAA+TGG	0.476144	7_1:-988707	Msa1003920:CDS
AAAGGGAAACAGAACATGTC+CGG	0.542373	7_1:-988334	Msa1003920:CDS
AAAGGTTTGACCTGACTCTA+AGG	0.329503	7_1:+988386	None:intergenic
AAATGACACATATAATGAGA+CGG	0.651445	7_1:+986238	None:intergenic
AACAGAACATGTCCGGTAAC+AGG	0.401864	7_1:-988327	Msa1003920:CDS
AACCTTGTCATCATTTAAGC+TGG	0.455375	7_1:+986952	None:intergenic
AACTGTGAGAGAGGTTCTTA+TGG	0.343570	7_1:-989058	Msa1003920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGCTTATCTGATATCTTG+AGG	+	chr7_1:985951-985970	None:intergenic	30.0%
GGAAACAAGTTAAATAACGA+AGG	-	chr7_1:986019-986038	Msa1003920:intron	30.0%
AATTCATCAGATAGTGATAG+TGG	-	chr7_1:986079-986098	Msa1003920:intron	30.0%
CAAAGAAAAGAAGGAACAAT+TGG	-	chr7_1:986147-986166	Msa1003920:intron	30.0%
AAGAAAAGAAGGAACAATTG+GGG	-	chr7_1:986149-986168	Msa1003920:intron	30.0%
AGCATATATGAATCCTTCAA+TGG	+	chr7_1:986181-986200	None:intergenic	30.0%
TATATGCTTAGACAATTGAG+TGG	-	chr7_1:986193-986212	Msa1003920:intron	30.0%
TTCTATGTATCCATTCAGAA+TGG	+	chr7_1:986380-986399	None:intergenic	30.0%
TATGGACTCTTGTATAAACA+AGG	+	chr7_1:987151-987170	None:intergenic	30.0%
AGATAAAGTCAGTTAATGGT+TGG	+	chr7_1:987218-987237	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	985764	990717	985764	ID=Msa1003920;Name=Msa1003920
chr7_1	mRNA	985764	990717	985764	ID=Msa1003920-mRNA-1;Parent=Msa1003920;Name=Msa1003920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0.14\|0\|1\|1\|1\|8\|0\|1110
chr7_1	exon	989428	990717	989428	ID=Msa1003920-mRNA-1:exon:471;Parent=Msa1003920-mRNA-1
chr7_1	exon	988943	989233	988943	ID=Msa1003920-mRNA-1:exon:470;Parent=Msa1003920-mRNA-1
chr7_1	exon	988579	988765	988579	ID=Msa1003920-mRNA-1:exon:469;Parent=Msa1003920-mRNA-1
chr7_1	exon	987865	988480	987865	ID=Msa1003920-mRNA-1:exon:468;Parent=Msa1003920-mRNA-1
chr7_1	exon	987341	987485	987341	ID=Msa1003920-mRNA-1:exon:467;Parent=Msa1003920-mRNA-1
chr7_1	exon	986778	987044	986778	ID=Msa1003920-mRNA-1:exon:466;Parent=Msa1003920-mRNA-1
chr7_1	exon	986235	986652	986235	ID=Msa1003920-mRNA-1:exon:465;Parent=Msa1003920-mRNA-1
chr7_1	exon	985764	985882	985764	ID=Msa1003920-mRNA-1:exon:464;Parent=Msa1003920-mRNA-1
chr7_1	CDS	989428	990717	989428	ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1	CDS	988943	989233	988943	ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1	CDS	988579	988765	988579	ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1	CDS	987865	988480	987865	ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1	CDS	987341	987485	987341	ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1	CDS	986778	987044	986778	ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1	CDS	986235	986652	986235	ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1	CDS	985764	985882	985764	ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1

Gene Sequence

>Msa1003920

ATGGCTTCATCTTTGGAGCAGCTTCTTGCACAGGAAGGGTTCAAAGCAAGCGGCAGAAAAGTGCAAAGGTCAAGATCTTCTTTCCATCATGGTAATTCAAGTGATCCTCTTCACTCTTTGGAAGATAGACTGTGTGTATCATCAAGTGAAAGAATTAAAACACAGAAAACAAAGTCTAAAACAGCCTCAAGATATCAGATAAGCAATACAAGTGACAATAAAAACATGAGATCAAGTGATAATAATGTTTTTATAGGAAACAAGTTAAATAACGAAGGGTCGAAGAACAGTGAATCTGAGAAGAACAAGTCTTACAATTCATCAGATAGTGATAGTGGATTTGACGATGCTTATTCAAACCAAGTGTCTAATGTGAAAAGAGGCAAAGAAAAGAAGGAACAATTGGGGGAAAAGCCATTGAAGGATTCATATATGCTTAGACAATTGAGTGGAAATAGAAAGAATATAAAACATCAAGAAAAATCATACTCTAGATCAAATAGTAATAGCAAAAACTATGAAGATAGCAAGAACAAAAATAGCAATCATGTTATGCAATTGCAAGATGCTTCTAGTCTTGCTATTGATGAAATTGCCGTGAAAGCACTAGTTTCCATTCTGAATGGATACATAGAAAGTTTTCTAACGGATGAAGATTTTCGGTCGGCGTTGCGCCACAATTGTTTCTCCTCTTTGAATTTCATTCAACTTGAGGAAGAGCGCAATTCTGAGACCAAGGTGATTACAAGTCTTGAGCAAGCAATTGAGTGCACAGAAAAAACTGCTGCTGAGGAAACTATATCTGCAACACATCTTAAAAGAGCAACAATGCAGCTTAGCATTATTACTGGTTTGAGTTTGAATGATCTCAAGTACGATTTTACGTGCGGGATTCAAAATTTCAAGTTATCAGCTTGTGCTCATCTTTACCTCAGTGTTGTATATTTGATCCAAAGAAAAAAGAAAGTTTCGGCGAAGCATCTTTTGCAAGTGTTTTGCGACTCTCCTTTTCAGGCGCGGACGATATTGTTGCCTGAACTTTGGGAGCGTCTATTTTCTTCGCAACTTTCTGATTTGAAGAAATGGTATGACAACAAGGAAAGTGAAATTGTTTTAGATACACAAAACAAAGCAAGAAAGATAAAGATTCTCCAGAAAGTGTATAATGAAAGTTTGGATTCAGGAACTCAATTATTTGCTTTATATTACAAAGATTGGCTCAGTGAAGGAGTAGAAACTCCAACTATTCCTTCCATCGGAATTCCATCATTATCCATTACGAGTCGACAGGGAAGTTCACTTGGTCATTCTTTTGAGTCTTCTAGCTCCAACGAACCATTCTCGCCACAGGCAATGGTCAGCAAAAAACTTTATGATTCTTTCTTTGGTAGTAAACCTCAAGTCTATGAAGTTGAAGTTGATGAGGATGAAGATAGCTTTGAAAACTGTGAGAGAGGTTCTTATGGTTCGACCATCGTTAAAAAAACATTAATATATGAATCAGAAACTGTTAAATATATCGATCAAAGTACTGAAGAGTTCACTCCAAGAGTACCAGTTCATGAATTCTATATGCCTGTGCGGAAAGGAACATCAAGGACAGCTGCAGAAGAATGGAAAGAGAAGAATTCCAGAAATGGCACTAGAAAATATTTCTCCATAGAAACTAATTTAAACAGTCACATATCTAATGATCTACCACATGAAAAAGCAAATGAAATTTCTATCAAAAAGATGCAGCCAAATAAGATAACCCCTACTATTGATGGATCATATTCTCCAAGCATACCACAGGAATTTATTTGTCCTCTGACAAGAAATATCTTTGAGGAACCAGTTACCTTAGAGTCAGGTCAAACCTTTGAAAGAAAAGCCATCAAGGCATGGTTTCAAAAGGGAAACAGAACATGTCCGGTAACAGGAAATACTTTAGAATGTGTAGTCATACCATTTAGCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAGATTTTGATCGCCTTCTTGATTTTGCCTCTCAAACTGTGGGAAATTCGAAGGAAATTAAGTTAAAAAAGCGCGATGAGGCTATCGTTTTCAAGTTACAAGGTCTATTATCTTCCTTGAAAGAAGAGGAAAAATCAACTTATGCTAAGCATATAATCTCTTTAGGGGTTCTTTCGTTTCTCTGTAGGAGGTTTGAACAAGGAAATTTGGAAGAAAAATCACATGTGATCGAGATCTTGTTAAATTGTATCCGATCAGATTCTAGTTGCATATATAAGATAGCAAGGGGTGTCAACAGAAAATTTCTTCTTGAGCTTCTTCACAGTAAGGATGTTACCCCAACAAAAAATGCAATACTATTCCTTACTGAACTTTTGTCAATGAAGAGAAGAAAGGATGTCACTTCTTTCATAAGTGGCTTGGTGGGTGAAGATGTAGTTAGTACAATGCATATTGTGCTCATGCATCTTAAGAATTCTTCTCCAATTGAAAAGCCCCTCATCGCTGTCCTCTTATTACACTTTGAACTACTGGTTGAGCAGCCTCAAAAGTTTAGCATATACATAGAGATGGCTGTGAATGCCATTGCAGAGGCACTTGATGCCAGCTTAAATGATGACAAGGTTCAAAAGAAGTGTTGCAGAGCTATTTTAATCTTGTGTGGCCATTTTTCTTCCACTGGAATGATAACAAATAATACTACCATCTTAAAGAAAGCAGGTTATAATAATGGTAGCTCAGAATTGAAATCTCCTAGCCTTGATGAAGAGGATCAACGGCTAAATGTAACCATTTCGTCGGAAGATGAAGAAGAAGAAATGGATGAAGAGTTCATGGCAAACTTGTTAGAATCAATGATTGGTGATGGAGAAAGTCTATTTTTGAAGACCATATCTAGATGTTTAGATTCTAGACATGTAGATTTGATGAGGGCTTGTCTAATAACTGTTACATGGTTGAGTTCCTCACTTTCTAAACAGTATAATGCTGGATTGCATCTTCCTGCCTTCTTAGCTATCATCTCTCAGCTGAAAGGAATCCTTGAGAATGAAGAACTTGAGCTCAAGACTCTTGCATCTATGTCCTTGTTCAACTTCAGTAAAATATCAGGTTTGGCACCATCACCGTTTATTTGTGATAAAAATCTTGCTAATTTCGGAACTATTGAAAGCAATTTTAAATGTTATTCCCTCCGTCTCATTATATGTGTCATTTTAGAATGCAGAACACTTTTGAAGATTATGGCAGACGATATTGCTCCCCTTCTTCATGGACTAGTTGATGTATTATGGACTGCTAAGAAACTGCATGCCATTTTGTATAGGGAGAATCTGTAG

Protein sequence

>Msa1003920

MASSLEQLLAQEGFKASGRKVQRSRSSFHHGNSSDPLHSLEDRLCVSSSERIKTQKTKSKTASRYQISNTSDNKNMRSSDNNVFIGNKLNNEGSKNSESEKNKSYNSSDSDSGFDDAYSNQVSNVKRGKEKKEQLGEKPLKDSYMLRQLSGNRKNIKHQEKSYSRSNSNSKNYEDSKNKNSNHVMQLQDASSLAIDEIAVKALVSILNGYIESFLTDEDFRSALRHNCFSSLNFIQLEEERNSETKVITSLEQAIECTEKTAAEETISATHLKRATMQLSIITGLSLNDLKYDFTCGIQNFKLSACAHLYLSVVYLIQRKKKVSAKHLLQVFCDSPFQARTILLPELWERLFSSQLSDLKKWYDNKESEIVLDTQNKARKIKILQKVYNESLDSGTQLFALYYKDWLSEGVETPTIPSIGIPSLSITSRQGSSLGHSFESSSSNEPFSPQAMVSKKLYDSFFGSKPQVYEVEVDEDEDSFENCERGSYGSTIVKKTLIYESETVKYIDQSTEEFTPRVPVHEFYMPVRKGTSRTAAEEWKEKNSRNGTRKYFSIETNLNSHISNDLPHEKANEISIKKMQPNKITPTIDGSYSPSIPQEFICPLTRNIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNTLECVVIPFSNLILKRLIDNWKSEDFDRLLDFASQTVGNSKEIKLKKRDEAIVFKLQGLLSSLKEEEKSTYAKHIISLGVLSFLCRRFEQGNLEEKSHVIEILLNCIRSDSSCIYKIARGVNRKFLLELLHSKDVTPTKNAILFLTELLSMKRRKDVTSFISGLVGEDVVSTMHIVLMHLKNSSPIEKPLIAVLLLHFELLVEQPQKFSIYIEMAVNAIAEALDASLNDDKVQKKCCRAILILCGHFSSTGMITNNTTILKKAGYNNGSSELKSPSLDEEDQRLNVTISSEDEEEEMDEEFMANLLESMIGDGESLFLKTISRCLDSRHVDLMRACLITVTWLSSSLSKQYNAGLHLPAFLAIISQLKGILENEELELKTLASMSLFNFSKISGLAPSPFICDKNLANFGTIESNFKCYSLRLIICVILECRTLLKIMADDIAPLLHGLVDVLWTAKKLHAILYRENL*