AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1003920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003920 MtrunA17_Chr7g0214471 91.982 1110 52 2 1 1110 1 1073 0.0 2038
Msa1003920 MtrunA17_Chr4g0043451 41.778 225 121 6 195 410 98 321 5.39e-43 160
Msa1003920 MtrunA17_Chr2g0291731 31.124 347 231 4 693 1036 566 907 2.71e-34 142
Msa1003920 MtrunA17_Chr2g0291731 35.448 268 137 9 165 422 41 282 2.61e-32 136
Msa1003920 MtrunA17_Chr1g0196911 28.571 399 252 13 638 1031 769 1139 8.42e-25 112
Msa1003920 MtrunA17_Chr1g0196911 36.667 120 76 0 597 716 507 626 6.89e-21 99.8
Msa1003920 MtrunA17_Chr1g0196911 26.141 241 137 5 200 405 8 242 3.83e-14 77.8
Msa1003920 MtrunA17_Chr8g0390311 52.000 75 36 0 590 664 389 463 4.64e-20 97.1
Msa1003920 MtrunA17_Chr8g0390311 25.731 342 244 7 693 1031 658 992 2.37e-16 84.7
Msa1003920 MtrunA17_Chr7g0275961 30.675 163 104 3 598 760 257 410 1.88e-15 81.6
Msa1003920 MtrunA17_Chr7g0237931 44.000 75 39 2 590 663 231 303 2.08e-14 77.8
Msa1003920 MtrunA17_Chr5g0413681 29.371 143 75 4 599 740 283 400 2.41e-13 74.7
Msa1003920 MtrunA17_Chr7g0248251 42.169 83 44 2 581 663 262 340 9.64e-13 72.4
Msa1003920 MtrunA17_Chr4g0031431 39.437 71 42 1 593 663 252 321 2.53e-12 71.2
Msa1003920 MtrunA17_Chr1g0199321 43.056 72 38 2 593 663 244 313 4.42e-12 70.5
Msa1003920 MtrunA17_Chr4g0059201 26.768 198 113 6 597 790 320 489 8.45e-12 69.7
Msa1003920 MtrunA17_Chr7g0234671 40.580 69 40 1 595 663 77 144 1.20e-11 68.6
Msa1003920 MtrunA17_Chr4g0044631 43.478 69 36 2 596 663 14 80 1.85e-11 67.8
Msa1003920 MtrunA17_Chr5g0434171 41.429 70 38 2 595 663 34 101 1.87e-11 67.8
Msa1003920 MtrunA17_Chr2g0284461 35.870 92 55 3 575 665 272 360 3.24e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1003920 AT1G76390.1 38.095 105 52 4 586 683 20 118 2.16e-12 72.0
Msa1003920 AT1G76390.2 38.095 105 52 4 586 683 20 118 2.16e-12 72.0
Msa1003920 AT1G68940.2 26.619 278 146 12 565 804 265 522 6.16e-12 70.9
Msa1003920 AT1G68940.3 26.619 278 146 12 565 804 212 469 6.87e-12 70.5
Msa1003920 AT1G68940.1 26.619 278 146 12 565 804 265 522 6.93e-12 70.5
Msa1003920 AT5G42340.1 40.000 80 47 1 584 663 278 356 9.01e-12 69.7
Msa1003920 AT1G49780.1 43.478 69 36 2 596 663 14 80 2.93e-11 67.4
Msa1003920 AT3G07360.1 40.580 69 40 1 595 663 73 140 3.89e-11 67.4
Msa1003920 AT1G20780.1 37.895 95 51 3 596 683 23 116 4.00e-11 67.8
Msa1003920 AT1G20780.2 37.895 95 51 3 596 683 23 116 4.00e-11 67.8
Msa1003920 AT1G20780.3 37.895 95 51 3 596 683 23 116 4.00e-11 67.8

Find 156 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTCATTATACACTTTC+TGG 0.079952 7_1:+989544 None:intergenic
ATAGTAGGGGTTATCTTATT+TGG 0.182015 7_1:+988584 None:intergenic
CGATCAAACGCTTCAAAATA+AGG 0.183245 7_1:+988268 None:intergenic
ATGGACTAGTTGATGTATTA+TGG 0.202999 7_1:-985809 Msa1003920:CDS
GCTAAGCATATAATCTCTTT+AGG 0.228808 7_1:-988087 Msa1003920:CDS
AAACTTTATGATTCTTTCTT+TGG 0.229672 7_1:-989136 Msa1003920:CDS
AGTATAAATGGCTTCATCTT+TGG 0.231855 7_1:-990702 None:intergenic
ACTGTTTAAATTAGTTTCTA+TGG 0.282515 7_1:+988667 None:intergenic
CTAAGCATATAATCTCTTTA+GGG 0.289542 7_1:-988086 Msa1003920:CDS
AAGTGATCCTCTTCACTCTT+TGG 0.296475 7_1:-990597 Msa1003920:CDS
TTCAACTTCAGTAAAATATC+AGG 0.299538 7_1:-986342 Msa1003920:CDS
TTGCTTTATATTACAAAGAT+TGG 0.314400 7_1:-989500 Msa1003920:CDS
TATAATGAAAGTTTGGATTC+AGG 0.314769 7_1:-989534 Msa1003920:CDS
GAGGTTTGAACAAGGAAATT+TGG 0.318367 7_1:-988043 Msa1003920:CDS
ATGCAGCTTAGCATTATTAC+TGG 0.324069 7_1:-989867 Msa1003920:CDS
AAAGGTTTGACCTGACTCTA+AGG 0.329503 7_1:+988386 None:intergenic
GATATTGCTCCCCTTCTTCA+TGG 0.330057 7_1:-985828 Msa1003920:CDS
GAAAGTGTATAATGAAAGTT+TGG 0.337823 7_1:-989541 Msa1003920:CDS
GATATTGTTGCCTGAACTTT+GGG 0.343487 7_1:-989673 Msa1003920:CDS
AACTGTGAGAGAGGTTCTTA+TGG 0.343570 7_1:-989058 Msa1003920:CDS
TTCAAAATAAGGTTGCTAAA+TGG 0.346748 7_1:+988279 None:intergenic
CAGATTCTCCCTATACAAAA+TGG 0.348155 7_1:+985767 None:intergenic
GGAAGATGAAGAAGAAGAAA+TGG 0.363565 7_1:-986631 Msa1003920:CDS
AAGAAAGCAGGTTATAATAA+TGG 0.369011 7_1:-986845 Msa1003920:CDS
TCTAAAGTATTTCCTGTTAC+CGG 0.369352 7_1:+988315 None:intergenic
AACTTTCTGATTTGAAGAAA+TGG 0.370655 7_1:-989632 Msa1003920:CDS
CAAAGAAAAGAAGGAACAAT+TGG 0.374214 7_1:-990312 Msa1003920:CDS
TGACCTGACTCTAAGGTAAC+TGG 0.378146 7_1:+988393 None:intergenic
CGATATTGTTGCCTGAACTT+TGG 0.378191 7_1:-989674 Msa1003920:CDS
CTTATTACACTTTGAACTAC+TGG 0.379975 7_1:-987340 Msa1003920:intron
AAGATAACCCCTACTATTGA+TGG 0.384414 7_1:-988578 Msa1003920:intron
CACTTCTTTCATAAGTGGCT+TGG 0.399869 7_1:-987451 Msa1003920:CDS
AACAGAACATGTCCGGTAAC+AGG 0.401864 7_1:-988327 Msa1003920:CDS
CTTCAGTAAAATATCAGGTT+TGG 0.408794 7_1:-986337 Msa1003920:CDS
GGGTTCTTTCGTTTCTCTGT+AGG 0.417240 7_1:-988065 Msa1003920:CDS
ATAACCTGCTTTCTTTAAGA+TGG 0.427114 7_1:+986853 None:intergenic
AATTCATCAGATAGTGATAG+TGG 0.427587 7_1:-990380 Msa1003920:CDS
AGAAATGGATGAAGAGTTCA+TGG 0.427897 7_1:-986616 Msa1003920:CDS
AATTCATGAACTGGTACTCT+TGG 0.428025 7_1:+988956 None:intergenic
CATCAAGGCATGGTTTCAAA+AGG 0.431872 7_1:-988352 Msa1003920:CDS
TCTTGAGCTTCTTCACAGTA+AGG 0.432710 7_1:-987923 Msa1003920:CDS
AAGAAAACTAACCGACGAAA+TGG 0.434545 7_1:+986766 None:intergenic
AAAGAAAAGAAGGAACAATT+GGG 0.435116 7_1:-990311 Msa1003920:CDS
TTCTTTCATAAGTGGCTTGG+TGG 0.436399 7_1:-987448 Msa1003920:CDS
TGAAGCGTTTGATCGATAAC+TGG 0.436744 7_1:-988260 Msa1003920:CDS
AATATCGTCCGCGCCTGAAA+AGG 0.442304 7_1:+989690 None:intergenic
GATGTCACTTCTTTCATAAG+TGG 0.443620 7_1:-987456 Msa1003920:CDS
ATAAATTCCTGTGGTATGCT+TGG 0.444770 7_1:+988447 None:intergenic
TCTGACAAGAAATATCTTTG+AGG 0.446797 7_1:-988418 Msa1003920:CDS
AATAGACGCTCCCAAAGTTC+AGG 0.451875 7_1:+989663 None:intergenic
AACCTTGTCATCATTTAAGC+TGG 0.455375 7_1:+986952 None:intergenic
CAAGGACAGCTGCAGAAGAA+TGG 0.461431 7_1:-988730 Msa1003920:CDS
CTTTCTAAACAGTATAATGC+TGG 0.465237 7_1:-986462 Msa1003920:CDS
AATGGAAACTAGTGCTTTCA+CGG 0.469991 7_1:+990100 None:intergenic
TTCTATGTATCCATTCAGAA+TGG 0.471459 7_1:+990082 None:intergenic
GCACTAGTTTCCATTCTGAA+TGG 0.474787 7_1:-990092 Msa1003920:CDS
AACTTGTTAGAATCAATGAT+TGG 0.475567 7_1:-986591 Msa1003920:CDS
AAAGAGAAGAATTCCAGAAA+TGG 0.476144 7_1:-988707 Msa1003920:CDS
TAATACCTGTCGACTCGTAA+TGG 0.478741 7_1:+989422 None:intergenic
CATCAACTAGTCCATGAAGA+AGG 0.482713 7_1:+985817 None:intergenic
CAAGTGTCTAATGTGAAAAG+AGG 0.484843 7_1:-990335 Msa1003920:CDS
GCCGTTGATCCTCTTCATCA+AGG 0.486422 7_1:+986798 None:intergenic
ATCTCCTAGCCTTGATGAAG+AGG 0.488093 7_1:-986807 Msa1003920:CDS
CTGAGAGATGATAGCTAAGA+AGG 0.488827 7_1:+986425 None:intergenic
GGCATATAGAATTCATGAAC+TGG 0.491434 7_1:+988947 None:intergenic
TTTGAATTTCATTCAACTTG+AGG 0.494489 7_1:-990003 Msa1003920:CDS
ACCATTGCCTGTGGCGAGAA+TGG 0.494969 7_1:+989166 None:intergenic
GCTCAAGTTCTTCATTCTCA+AGG 0.497709 7_1:+986391 None:intergenic
AGCATATATGAATCCTTCAA+TGG 0.500188 7_1:+990281 None:intergenic
TCAAGATCTTCTTTCCATCA+TGG 0.500865 7_1:-990626 Msa1003920:CDS
CTTGTCTAATAACTGTTACA+TGG 0.501990 7_1:-986497 Msa1003920:CDS
ATTCCGATGGAAGGAATAGT+TGG 0.504559 7_1:+989456 None:intergenic
GTAGTTCAAAGTGTAATAAG+AGG 0.504871 7_1:+987343 None:intergenic
AGAATCTAAACATCTAGATA+TGG 0.504905 7_1:+986542 None:intergenic
TCTTTCATAAGTGGCTTGGT+GGG 0.512051 7_1:-987447 Msa1003920:CDS
CGAATTTCCCACAGTTTGAG+AGG 0.512056 7_1:+988203 None:intergenic
CTTTGAAAGAAAAGCCATCA+AGG 0.514152 7_1:-988367 Msa1003920:CDS
TTTGGAGCAGCTTCTTGCAC+AGG 0.514480 7_1:-990684 Msa1003920:CDS
TTCTTTCGTTTCTCTGTAGG+AGG 0.515913 7_1:-988062 Msa1003920:CDS
ATTATCTTCCTTGAAAGAAG+AGG 0.516340 7_1:-988124 Msa1003920:CDS
GAAAAGAGGCAAAGAAAAGA+AGG 0.518665 7_1:-990321 Msa1003920:CDS
GAACCAGTTACCTTAGAGTC+AGG 0.520909 7_1:-988396 Msa1003920:CDS
ATTGCTTATCTGATATCTTG+AGG 0.529217 7_1:+990511 None:intergenic
TTATCACAAATAAACGGTGA+TGG 0.533604 7_1:+986312 None:intergenic
TCAAAGATATTTCTTGTCAG+AGG 0.534699 7_1:+988420 None:intergenic
ATCAACTAGTCCATGAAGAA+GGG 0.539153 7_1:+985818 None:intergenic
TCATTGACAAAAGTTCAGTA+AGG 0.539896 7_1:+987869 None:intergenic
TAATGACAGGGAAGTTCACT+TGG 0.540383 7_1:-989220 Msa1003920:intron
AGCAGCTTCTTGCACAGGAA+GGG 0.540666 7_1:-990679 Msa1003920:CDS
AAAGGGAAACAGAACATGTC+CGG 0.542373 7_1:-988334 Msa1003920:CDS
ACCATTCTCGCCACAGGCAA+TGG 0.544070 7_1:-989167 Msa1003920:CDS
CTCTGTAGGAGGTTTGAACA+AGG 0.545055 7_1:-988051 Msa1003920:CDS
GAGATGATAGCTAAGAAGGC+AGG 0.545629 7_1:+986429 None:intergenic
CGACTCGTAATGGATAATGA+TGG 0.548637 7_1:+989432 None:intergenic
ACTACCATCTTAAAGAAAGC+AGG 0.549148 7_1:-986857 Msa1003920:CDS
GGCATCAAGTGCCTCTGCAA+TGG 0.549842 7_1:+986973 None:intergenic
TAATAAGAGGACAGCGATGA+GGG 0.550715 7_1:+987356 None:intergenic
CTCAAGACTTGTAATCACCT+TGG 0.550915 7_1:+989962 None:intergenic
CTAGACATGTAGATTTGATG+AGG 0.555129 7_1:-986521 Msa1003920:CDS
GTTGCATATATAAGATAGCA+AGG 0.557196 7_1:-987966 Msa1003920:CDS
GCCTTGATGAAGAGGATCAA+CGG 0.558378 7_1:-986799 Msa1003920:CDS
ATCAAGGCATGGTTTCAAAA+GGG 0.559344 7_1:-988351 Msa1003920:CDS
TTAGAATCAATGATTGGTGA+TGG 0.561943 7_1:-986585 Msa1003920:CDS
ATTATCCATTACGAGTCGAC+AGG 0.568253 7_1:-989427 Msa1003920:intron
TCAAACTGTGGGAAATTCGA+AGG 0.569601 7_1:-988199 Msa1003920:CDS
AAAGAAAAGCCATCAAGGCA+TGG 0.569716 7_1:-988362 Msa1003920:CDS
ATTATACTGTTTAGAAAGTG+AGG 0.571728 7_1:+986467 None:intergenic
ACTTCAACTTCATAGACTTG+AGG 0.573701 7_1:+989106 None:intergenic
TAGACATGTAGATTTGATGA+GGG 0.575230 7_1:-986520 Msa1003920:CDS
ATTATTTGTTATCATTCCAG+TGG 0.576441 7_1:+986880 None:intergenic
TTGCATATATAAGATAGCAA+GGG 0.577003 7_1:-987965 Msa1003920:CDS
TGATCCTCTTCATCAAGGCT+AGG 0.580353 7_1:+986803 None:intergenic
AATAATATTTGACAGCGGAA+AGG 0.581020 7_1:-988758 Msa1003920:intron
CAACGAACCATTCTCGCCAC+AGG 0.582453 7_1:-989173 Msa1003920:CDS
AATGATGGAATTCCGATGGA+AGG 0.584929 7_1:+989447 None:intergenic
AGCTTTGAAAACTGTGAGAG+AGG 0.585518 7_1:-989067 Msa1003920:CDS
TACAAAGATTGGCTCAGTGA+AGG 0.585870 7_1:-989489 Msa1003920:CDS
GAGCAGCTTCTTGCACAGGA+AGG 0.586816 7_1:-990680 Msa1003920:CDS
GCTATCATCTCTCAGCTGAA+AGG 0.587912 7_1:-986417 Msa1003920:CDS
GGATAATGATGGAATTCCGA+TGG 0.588555 7_1:+989443 None:intergenic
CTATCTTCCAAAGAGTGAAG+AGG 0.591307 7_1:+990590 None:intergenic
GGAAACAAGTTAAATAACGA+AGG 0.597175 7_1:-990440 Msa1003920:CDS
GATCACTTGAATTACCATGA+TGG 0.601325 7_1:+990612 None:intergenic
ATATGCAACTAGAATCTGAT+CGG 0.602029 7_1:+987980 None:intergenic
ATATTCTCCAAGCATACCAC+AGG 0.604413 7_1:-988454 Msa1003920:CDS
TATATGCTTAGACAATTGAG+TGG 0.608616 7_1:-990266 Msa1003920:CDS
CAGGAAGGGTTCAAAGCAAG+CGG 0.609110 7_1:-990665 Msa1003920:CDS
TTTCTTACCATCAATAGTAG+GGG 0.612144 7_1:+988571 None:intergenic
TGCCAGCTTAAATGATGACA+AGG 0.619717 7_1:-986954 Msa1003920:CDS
GTTTAGCATATACATAGAGA+TGG 0.619765 7_1:-987005 Msa1003920:CDS
GAAACAAGTTAAATAACGAA+GGG 0.623558 7_1:-990439 Msa1003920:CDS
ACTCCAACTATTCCTTCCAT+CGG 0.626415 7_1:-989459 Msa1003920:CDS
AGAGCGCAATTCTGAGACCA+AGG 0.627342 7_1:-989979 Msa1003920:CDS
TGCATATATAAGATAGCAAG+GGG 0.634241 7_1:-987964 Msa1003920:CDS
TTTGAGAGGCAAAATCAAGA+AGG 0.635942 7_1:+988217 None:intergenic
TAAGCATATAATCTCTTTAG+GGG 0.637602 7_1:-988085 Msa1003920:CDS
GACACATATAATGAGACGGA+GGG 0.637757 7_1:+986242 None:intergenic
TCAACTAGTCCATGAAGAAG+GGG 0.638307 7_1:+985819 None:intergenic
GCTAAATGTAACCATTTCGT+CGG 0.644677 7_1:-986777 Msa1003920:intron
AAATGACACATATAATGAGA+CGG 0.651445 7_1:+986238 None:intergenic
CTGTGGCGAGAATGGTTCGT+TGG 0.657069 7_1:+989174 None:intergenic
GAAGAAATGGTATGACAACA+AGG 0.658330 7_1:-989619 Msa1003920:CDS
GACAGCGGAAAGGAACATCA+AGG 0.658940 7_1:-988748 Msa1003920:intron
AAGTTGAATGAAATTCAAAG+AGG 0.660155 7_1:+990007 None:intergenic
CAAGCGGCAGAAAAGTGCAA+AGG 0.663772 7_1:-990649 Msa1003920:CDS
GTAATAAGAGGACAGCGATG+AGG 0.664032 7_1:+987355 None:intergenic
TCAAAGAGGAGAAACAATTG+TGG 0.665172 7_1:+990021 None:intergenic
GGCTGTGAATGCCATTGCAG+AGG 0.666777 7_1:-986984 Msa1003920:CDS
CTATGAAGTTGAAGTTGATG+AGG 0.667707 7_1:-989098 Msa1003920:CDS
TCATGAATTCTATATGCCTG+TGG 0.669411 7_1:-988942 Msa1003920:intron
AAGAAAAGAAGGAACAATTG+GGG 0.676981 7_1:-990310 Msa1003920:CDS
AGAAAAGAAGGAACAATTGG+GGG 0.678559 7_1:-990309 Msa1003920:CDS
AGAGGACAAATAAATTCCTG+TGG 0.684769 7_1:+988438 None:intergenic
AATAAGAGGACAGCGATGAG+GGG 0.685162 7_1:+987357 None:intergenic
TGACACATATAATGAGACGG+AGG 0.700368 7_1:+986241 None:intergenic
GGATCAAATATACAACACTG+AGG 0.761941 7_1:+989766 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAAAAAAAGACAAAA+AGG + chr7_1:987554-987573 None:intergenic 10.0%
!!! TTCATTTTACATAAAATTTT+TGG - chr7_1:987973-987992 Msa1003920:CDS 10.0%
!!! AGTGATAATAATGTTTTTAT+AGG - chr7_1:985998-986017 Msa1003920:intron 15.0%
!!! TATTAATGTTTTTTTAACGA+TGG + chr7_1:987432-987451 None:intergenic 15.0%
!!! ACTATAAATAATTTTACTGT+AGG + chr7_1:987605-987624 None:intergenic 15.0%
!!! AGATTTTTATCACAAATAAA+CGG + chr7_1:990156-990175 None:intergenic 15.0%
!! ACTAAAATATTCAAATTCAT+TGG - chr7_1:990312-990331 Msa1003920:CDS 15.0%
!!! ATACATAGAAAGTTTTCTAA+CGG - chr7_1:986390-986409 Msa1003920:CDS 20.0%
!! TTGCTTTATATTACAAAGAT+TGG - chr7_1:986959-986978 Msa1003920:CDS 20.0%
!!! TTGTTATCTTCATTTTCTTA+TGG + chr7_1:987169-987188 None:intergenic 20.0%
!! AAACTTTATGATTCTTTCTT+TGG - chr7_1:987323-987342 Msa1003920:intron 20.0%
!!! ACTGTTTAAATTAGTTTCTA+TGG + chr7_1:987795-987814 None:intergenic 20.0%
!!! TTACATAAAATTTTTGGTGT+AGG - chr7_1:987979-987998 Msa1003920:CDS 20.0%
!!! ATAGTATTGCATTTTTTGTT+GGG + chr7_1:988569-988588 None:intergenic 20.0%
!!! AATAGTATTGCATTTTTTGT+TGG + chr7_1:988570-988589 None:intergenic 20.0%
!!! GTGAGATTTTTATCAAATTT+TGG - chr7_1:988617-988636 Msa1003920:CDS 20.0%
!! TCTTTCGAAATATTATTTAC+TGG - chr7_1:988957-988976 Msa1003920:CDS 20.0%
!!! CTATTTATTTTGTAGAAGAA+AGG - chr7_1:988981-989000 Msa1003920:CDS 20.0%
!! ATTGAATTTCATTCATTGTT+TGG + chr7_1:989371-989390 None:intergenic 20.0%
!! TCATTTAGTTAAAAAATGAC+AGG - chr7_1:989807-989826 Msa1003920:CDS 20.0%
!! GATAAAAATCTTGCTAATTT+CGG - chr7_1:990165-990184 Msa1003920:CDS 20.0%
!! ATCGTAAAAAAGTTAATAAG+TGG - chr7_1:990399-990418 Msa1003920:CDS 20.0%
!! TCATATCTATAAACTAGTAT+CGG + chr7_1:990512-990531 None:intergenic 20.0%
! GAAACAAGTTAAATAACGAA+GGG - chr7_1:986020-986039 Msa1003920:intron 25.0%
! AAAGAAAAGAAGGAACAATT+GGG - chr7_1:986148-986167 Msa1003920:intron 25.0%
! AAGTTGAATGAAATTCAAAG+AGG + chr7_1:986455-986474 None:intergenic 25.0%
! TTTGAATTTCATTCAACTTG+AGG - chr7_1:986456-986475 Msa1003920:CDS 25.0%
! CCAAAGAAAAAAGAAAGTTT+CGG - chr7_1:986714-986733 Msa1003920:intron 25.0%
!! AACTTTCTGATTTGAAGAAA+TGG - chr7_1:986827-986846 Msa1003920:CDS 25.0%
! AACTTTCATTATACACTTTC+TGG + chr7_1:986918-986937 None:intergenic 25.0%
!! GAAAGTGTATAATGAAAGTT+TGG - chr7_1:986918-986937 Msa1003920:CDS 25.0%
! TATAATGAAAGTTTGGATTC+AGG - chr7_1:986925-986944 Msa1003920:CDS 25.0%
! TTGATCGATAATGAATACAA+AGG - chr7_1:987124-987143 Msa1003920:intron 25.0%
! TTAGAGATAAAGTCAGTTAA+TGG + chr7_1:987222-987241 None:intergenic 25.0%
!!! ATTTCATTTGCTTTTTCATG+TGG + chr7_1:987836-987855 None:intergenic 25.0%
!! TTTTCTTACCATCAATAGTA+GGG + chr7_1:987892-987911 None:intergenic 25.0%
!! TTTTTCTTACCATCAATAGT+AGG + chr7_1:987893-987912 None:intergenic 25.0%
!!! AAAATCCATTTGTTATCTGA+AGG + chr7_1:987938-987957 None:intergenic 25.0%
! TTCAAAATAAGGTTGCTAAA+TGG + chr7_1:988183-988202 None:intergenic 25.0%
! CTAAGCATATAATCTCTTTA+GGG - chr7_1:988373-988392 Msa1003920:CDS 25.0%
! TAAGCATATAATCTCTTTAG+GGG - chr7_1:988374-988393 Msa1003920:CDS 25.0%
! TTGCATATATAAGATAGCAA+GGG - chr7_1:988494-988513 Msa1003920:intron 25.0%
!!! TAGTATTGCATTTTTTGTTG+GGG + chr7_1:988568-988587 None:intergenic 25.0%
! CAAATAGAGGTTATAAATAG+CGG - chr7_1:988758-988777 Msa1003920:intron 25.0%
! GTTATAAATAGCGGTTATAA+CGG - chr7_1:988767-988786 Msa1003920:intron 25.0%
!!! TTGAGGTTGTTTTTATAAGA+GGG - chr7_1:989222-989241 Msa1003920:intron 25.0%
! ATAGACTGTTCAATATTTAG+AGG + chr7_1:989264-989283 None:intergenic 25.0%
! ATATTTAAAGATCAAGTGAC+TGG - chr7_1:989287-989306 Msa1003920:intron 25.0%
! AAAGTCTCTTTAACATTGAA+GGG + chr7_1:989319-989338 None:intergenic 25.0%
!! ATGTATATGCTAAACTTTTG+AGG + chr7_1:989449-989468 None:intergenic 25.0%
!!! ATTATTTGTTATCATTCCAG+TGG + chr7_1:989582-989601 None:intergenic 25.0%
! AAGAAAGCAGGTTATAATAA+TGG - chr7_1:989614-989633 Msa1003920:CDS 25.0%
!!! AACTTGTTAGAATCAATGAT+TGG - chr7_1:989868-989887 Msa1003920:CDS 25.0%
! AGAATCTAAACATCTAGATA+TGG + chr7_1:989920-989939 None:intergenic 25.0%
! ATTATACTGTTTAGAAAGTG+AGG + chr7_1:989995-990014 None:intergenic 25.0%
!! TATTTTACTGAAGTTGAACA+AGG + chr7_1:990115-990134 None:intergenic 25.0%
! TTCAACTTCAGTAAAATATC+AGG - chr7_1:990117-990136 Msa1003920:CDS 25.0%
! AAATGACACATATAATGAGA+CGG + chr7_1:990224-990243 None:intergenic 25.0%
!!! CTCATTATATGTGTCATTTT+AGG - chr7_1:990225-990244 Msa1003920:CDS 25.0%
! AATATTCAAATTCATTGGAG+TGG - chr7_1:990317-990336 Msa1003920:CDS 25.0%
! GATATTCCAAAGTGAAAAAT+AGG - chr7_1:990428-990447 Msa1003920:CDS 25.0%
ATTGCTTATCTGATATCTTG+AGG + chr7_1:985951-985970 None:intergenic 30.0%
GGAAACAAGTTAAATAACGA+AGG - chr7_1:986019-986038 Msa1003920:intron 30.0%
AATTCATCAGATAGTGATAG+TGG - chr7_1:986079-986098 Msa1003920:intron 30.0%
CAAAGAAAAGAAGGAACAAT+TGG - chr7_1:986147-986166 Msa1003920:intron 30.0%
AAGAAAAGAAGGAACAATTG+GGG - chr7_1:986149-986168 Msa1003920:intron 30.0%
AGCATATATGAATCCTTCAA+TGG + chr7_1:986181-986200 None:intergenic 30.0%
TATATGCTTAGACAATTGAG+TGG - chr7_1:986193-986212 Msa1003920:intron 30.0%
TTCTATGTATCCATTCAGAA+TGG + chr7_1:986380-986399 None:intergenic 30.0%
!! TTCTAACGGATGAAGATTTT+CGG - chr7_1:986404-986423 Msa1003920:CDS 30.0%
!!! CCGAAACTTTCTTTTTTCTT+TGG + chr7_1:986717-986736 None:intergenic 30.0%
TATGGACTCTTGTATAAACA+AGG + chr7_1:987151-987170 None:intergenic 30.0%
AGATAAAGTCAGTTAATGGT+TGG + chr7_1:987218-987237 None:intergenic 30.0%
TGACTTTATCTCTAATGACA+GGG - chr7_1:987227-987246 Msa1003920:intron 30.0%
AAAGGTGAAATTATTACCAC+AGG + chr7_1:987536-987555 None:intergenic 30.0%
TATTGACAGTGTGAAATATG+AGG + chr7_1:987685-987704 None:intergenic 30.0%
CTGTCAATAATATTTGACAG+CGG - chr7_1:987696-987715 Msa1003920:intron 30.0%
AATAATATTTGACAGCGGAA+AGG - chr7_1:987701-987720 Msa1003920:intron 30.0%
AAAGAGAAGAATTCCAGAAA+TGG - chr7_1:987752-987771 Msa1003920:intron 30.0%
!!! ATATTTTCTAGTGCCATTTC+TGG + chr7_1:987768-987787 None:intergenic 30.0%
ATAGTAGGGGTTATCTTATT+TGG + chr7_1:987878-987897 None:intergenic 30.0%
TTTCTTACCATCAATAGTAG+GGG + chr7_1:987891-987910 None:intergenic 30.0%
!! CAGATAACAAATGGATTTTC+TGG - chr7_1:987939-987958 Msa1003920:CDS 30.0%
TCAAAGATATTTCTTGTCAG+AGG + chr7_1:988042-988061 None:intergenic 30.0%
TCTGACAAGAAATATCTTTG+AGG - chr7_1:988041-988060 Msa1003920:CDS 30.0%
! TCTAAAGTATTTCCTGTTAC+CGG + chr7_1:988147-988166 None:intergenic 30.0%
ATTATCTTCCTTGAAAGAAG+AGG - chr7_1:988335-988354 Msa1003920:CDS 30.0%
! TGATTTTTCCTCTTCTTTCA+AGG + chr7_1:988346-988365 None:intergenic 30.0%
GCTAAGCATATAATCTCTTT+AGG - chr7_1:988372-988391 Msa1003920:CDS 30.0%
ATATGCAACTAGAATCTGAT+CGG + chr7_1:988482-988501 None:intergenic 30.0%
GTTGCATATATAAGATAGCA+AGG - chr7_1:988493-988512 Msa1003920:intron 30.0%
TGCATATATAAGATAGCAAG+GGG - chr7_1:988495-988514 Msa1003920:intron 30.0%
TCATTGACAAAAGTTCAGTA+AGG + chr7_1:988593-988612 None:intergenic 30.0%
! TTTTATCAGTGATGTACACT+TGG + chr7_1:988680-988699 None:intergenic 30.0%
GTATCAATGTTGTCAAATAG+AGG - chr7_1:988745-988764 Msa1003920:CDS 30.0%
CAGAATAGTGTTATCAATGA+CGG + chr7_1:988925-988944 None:intergenic 30.0%
GTAGTTCAAAGTGTAATAAG+AGG + chr7_1:989119-989138 None:intergenic 30.0%
CTTATTACACTTTGAACTAC+TGG - chr7_1:989119-989138 Msa1003920:CDS 30.0%
!!! GTTGAGGTTGTTTTTATAAG+AGG - chr7_1:989221-989240 Msa1003920:intron 30.0%
GAAAGTCTCTTTAACATTGA+AGG + chr7_1:989320-989339 None:intergenic 30.0%
GTTTAGCATATACATAGAGA+TGG - chr7_1:989454-989473 Msa1003920:CDS 30.0%
!!! AGAGCTATTTTAATCTTGTG+TGG - chr7_1:989545-989564 Msa1003920:CDS 30.0%
! ATAACCTGCTTTCTTTAAGA+TGG + chr7_1:989609-989628 None:intergenic 30.0%
GTCACTTAATGAATGTATCT+AGG - chr7_1:989777-989796 Msa1003920:CDS 30.0%
TTAGAATCAATGATTGGTGA+TGG - chr7_1:989874-989893 Msa1003920:CDS 30.0%
TAGACATGTAGATTTGATGA+GGG - chr7_1:989939-989958 Msa1003920:CDS 30.0%
CTTGTCTAATAACTGTTACA+TGG - chr7_1:989962-989981 Msa1003920:CDS 30.0%
CTTTCTAAACAGTATAATGC+TGG - chr7_1:989997-990016 Msa1003920:CDS 30.0%
CTTCAGTAAAATATCAGGTT+TGG - chr7_1:990122-990141 Msa1003920:CDS 30.0%
TTATCACAAATAAACGGTGA+TGG + chr7_1:990150-990169 None:intergenic 30.0%
! GTGGACTGTCTAATTAAATA+AGG - chr7_1:990371-990390 Msa1003920:CDS 30.0%
!! TCTCAACCTATTTTTCACTT+TGG + chr7_1:990437-990456 None:intergenic 30.0%
!! CAGAACACTTTTGAAGATTA+TGG - chr7_1:990603-990622 Msa1003920:CDS 30.0%
!! ATGGACTAGTTGATGTATTA+TGG - chr7_1:990650-990669 Msa1003920:CDS 30.0%
TCAAGATCTTCTTTCCATCA+TGG - chr7_1:985833-985852 Msa1003920:CDS 35.0%
GATCACTTGAATTACCATGA+TGG + chr7_1:985850-985869 None:intergenic 35.0%
! CTCTTTTCACATTAGACACT+TGG + chr7_1:986126-986145 None:intergenic 35.0%
CAAGTGTCTAATGTGAAAAG+AGG - chr7_1:986124-986143 Msa1003920:intron 35.0%
GAAAAGAGGCAAAGAAAAGA+AGG - chr7_1:986138-986157 Msa1003920:intron 35.0%
AGAAAAGAAGGAACAATTGG+GGG - chr7_1:986150-986169 Msa1003920:intron 35.0%
AATGGAAACTAGTGCTTTCA+CGG + chr7_1:986362-986381 None:intergenic 35.0%
TCAAAGAGGAGAAACAATTG+TGG + chr7_1:986441-986460 None:intergenic 35.0%
ATGCAGCTTAGCATTATTAC+TGG - chr7_1:986592-986611 Msa1003920:CDS 35.0%
GGATCAAATATACAACACTG+AGG + chr7_1:986696-986715 None:intergenic 35.0%
GATATTGTTGCCTGAACTTT+GGG - chr7_1:986786-986805 Msa1003920:CDS 35.0%
GAAGAAATGGTATGACAACA+AGG - chr7_1:986840-986859 Msa1003920:CDS 35.0%
CTGACTTTATCTCTAATGAC+AGG - chr7_1:987226-987245 Msa1003920:intron 35.0%
ACTTCAACTTCATAGACTTG+AGG + chr7_1:987356-987375 None:intergenic 35.0%
!! CTATGAAGTTGAAGTTGATG+AGG - chr7_1:987361-987380 Msa1003920:CDS 35.0%
AATTCATGAACTGGTACTCT+TGG + chr7_1:987506-987525 None:intergenic 35.0%
GGCATATAGAATTCATGAAC+TGG + chr7_1:987515-987534 None:intergenic 35.0%
TCATGAATTCTATATGCCTG+TGG - chr7_1:987517-987536 Msa1003920:intron 35.0%
AAGATAACCCCTACTATTGA+TGG - chr7_1:987881-987900 Msa1003920:CDS 35.0%
AGCTTCCTTCAGATAACAAA+TGG - chr7_1:987930-987949 Msa1003920:CDS 35.0%
ATAAATTCCTGTGGTATGCT+TGG + chr7_1:988015-988034 None:intergenic 35.0%
AGAGGACAAATAAATTCCTG+TGG + chr7_1:988024-988043 None:intergenic 35.0%
!! CTTGATGGCTTTTCTTTCAA+AGG + chr7_1:988094-988113 None:intergenic 35.0%
! CTTTGAAAGAAAAGCCATCA+AGG - chr7_1:988092-988111 Msa1003920:CDS 35.0%
ATCAAGGCATGGTTTCAAAA+GGG - chr7_1:988108-988127 Msa1003920:CDS 35.0%
CGATCAAACGCTTCAAAATA+AGG + chr7_1:988194-988213 None:intergenic 35.0%
TTTGAGAGGCAAAATCAAGA+AGG + chr7_1:988245-988264 None:intergenic 35.0%
! TAAGTTAAAAAAGCGCGATG+AGG - chr7_1:988287-988306 Msa1003920:CDS 35.0%
!!! GCTATCGTTTTCAAGTTACA+AGG - chr7_1:988309-988328 Msa1003920:CDS 35.0%
GAGGTTTGAACAAGGAAATT+TGG - chr7_1:988416-988435 Msa1003920:CDS 35.0%
! CTGAACTTTTGTCAATGAAG+AGG - chr7_1:988595-988614 Msa1003920:CDS 35.0%
!! CATAAAGTGCTGTCAAATAG+TGG - chr7_1:988847-988866 Msa1003920:intron 35.0%
! GATGTCACTTCTTTCATAAG+TGG - chr7_1:989003-989022 Msa1003920:CDS 35.0%
AACCTTGTCATCATTTAAGC+TGG + chr7_1:989510-989529 None:intergenic 35.0%
TCATTCCAGTGGAAGAAAAA+TGG + chr7_1:989571-989590 None:intergenic 35.0%
ACTACCATCTTAAAGAAAGC+AGG - chr7_1:989602-989621 Msa1003920:CDS 35.0%
GCTAAATGTAACCATTTCGT+CGG - chr7_1:989682-989701 Msa1003920:CDS 35.0%
AAGAAAACTAACCGACGAAA+TGG + chr7_1:989696-989715 None:intergenic 35.0%
GGAAGATGAAGAAGAAGAAA+TGG - chr7_1:989828-989847 Msa1003920:CDS 35.0%
AGAAATGGATGAAGAGTTCA+TGG - chr7_1:989843-989862 Msa1003920:CDS 35.0%
CTAGACATGTAGATTTGATG+AGG - chr7_1:989938-989957 Msa1003920:CDS 35.0%
GTGGTAGTAAAGTAGTAGTT+AGG - chr7_1:990349-990368 Msa1003920:CDS 35.0%
GTAGTAAAGTAGTAGTTAGG+TGG - chr7_1:990352-990371 Msa1003920:CDS 35.0%
ATCAACTAGTCCATGAAGAA+GGG + chr7_1:990644-990663 None:intergenic 35.0%
!!! AACTGCATGCCATTTTGTAT+AGG - chr7_1:990683-990702 Msa1003920:CDS 35.0%
!!! ACTGCATGCCATTTTGTATA+GGG - chr7_1:990684-990703 Msa1003920:CDS 35.0%
CAGATTCTCCCTATACAAAA+TGG + chr7_1:990695-990714 None:intergenic 35.0%
AAGTGATCCTCTTCACTCTT+TGG - chr7_1:985862-985881 Msa1003920:CDS 40.0%
CTATCTTCCAAAGAGTGAAG+AGG + chr7_1:985872-985891 None:intergenic 40.0%
! GCACTAGTTTCCATTCTGAA+TGG - chr7_1:986367-986386 Msa1003920:CDS 40.0%
! AACGGATGAAGATTTTCGGT+CGG - chr7_1:986408-986427 Msa1003920:CDS 40.0%
CTCAAGACTTGTAATCACCT+TGG + chr7_1:986500-986519 None:intergenic 40.0%
! CTCAAGTACGATTTTACGTG+CGG - chr7_1:986631-986650 Msa1003920:CDS 40.0%
! TCAAGTACGATTTTACGTGC+GGG - chr7_1:986632-986651 Msa1003920:CDS 40.0%
CGATATTGTTGCCTGAACTT+TGG - chr7_1:986785-986804 Msa1003920:CDS 40.0%
! TACAAAGATTGGCTCAGTGA+AGG - chr7_1:986970-986989 Msa1003920:CDS 40.0%
ACTCCAACTATTCCTTCCAT+CGG - chr7_1:987000-987019 Msa1003920:CDS 40.0%
ATTCCGATGGAAGGAATAGT+TGG + chr7_1:987006-987025 None:intergenic 40.0%
! AATGATGGAATTCCGATGGA+AGG + chr7_1:987015-987034 None:intergenic 40.0%
! GGATAATGATGGAATTCCGA+TGG + chr7_1:987019-987038 None:intergenic 40.0%
!! CGACTCGTAATGGATAATGA+TGG + chr7_1:987030-987049 None:intergenic 40.0%
ATTATCCATTACGAGTCGAC+AGG - chr7_1:987032-987051 Msa1003920:intron 40.0%
!! TAATACCTGTCGACTCGTAA+TGG + chr7_1:987040-987059 None:intergenic 40.0%
TAATGACAGGGAAGTTCACT+TGG - chr7_1:987239-987258 Msa1003920:intron 40.0%
!! AGCTTTGAAAACTGTGAGAG+AGG - chr7_1:987392-987411 Msa1003920:CDS 40.0%
AACTGTGAGAGAGGTTCTTA+TGG - chr7_1:987401-987420 Msa1003920:CDS 40.0%
TGCTACATCAAGCATATGAG+TGG + chr7_1:987640-987659 None:intergenic 40.0%
ATATTCTCCAAGCATACCAC+AGG - chr7_1:988005-988024 Msa1003920:CDS 40.0%
AAAGGTTTGACCTGACTCTA+AGG + chr7_1:988076-988095 None:intergenic 40.0%
AAAGAAAAGCCATCAAGGCA+TGG - chr7_1:988097-988116 Msa1003920:CDS 40.0%
!!! CTTTTGAAACCATGCCTTGA+TGG + chr7_1:988109-988128 None:intergenic 40.0%
CATCAAGGCATGGTTTCAAA+AGG - chr7_1:988107-988126 Msa1003920:CDS 40.0%
AAAGGGAAACAGAACATGTC+CGG - chr7_1:988125-988144 Msa1003920:CDS 40.0%
! TGAAGCGTTTGATCGATAAC+TGG - chr7_1:988199-988218 Msa1003920:CDS 40.0%
! TGATTTTGCCTCTCAAACTG+TGG - chr7_1:988248-988267 Msa1003920:CDS 40.0%
! GATTTTGCCTCTCAAACTGT+GGG - chr7_1:988249-988268 Msa1003920:CDS 40.0%
TCAAACTGTGGGAAATTCGA+AGG - chr7_1:988260-988279 Msa1003920:CDS 40.0%
TTCTTTCGTTTCTCTGTAGG+AGG - chr7_1:988397-988416 Msa1003920:CDS 40.0%
TCTTGAGCTTCTTCACAGTA+AGG - chr7_1:988536-988555 Msa1003920:intron 40.0%
CACTTCTTTCATAAGTGGCT+TGG - chr7_1:989008-989027 Msa1003920:CDS 40.0%
! TTCTTTCATAAGTGGCTTGG+TGG - chr7_1:989011-989030 Msa1003920:CDS 40.0%
!! TCTTTCATAAGTGGCTTGGT+GGG - chr7_1:989012-989031 Msa1003920:CDS 40.0%
TAATAAGAGGACAGCGATGA+GGG + chr7_1:989106-989125 None:intergenic 40.0%
AACAACCTCAACATCATGCA+AGG + chr7_1:989213-989232 None:intergenic 40.0%
CTAGAACATATTTGCACTGC+AGG - chr7_1:989415-989434 Msa1003920:intron 40.0%
TGCCAGCTTAAATGATGACA+AGG - chr7_1:989505-989524 Msa1003920:CDS 40.0%
CTGAGAGATGATAGCTAAGA+AGG + chr7_1:990037-990056 None:intergenic 40.0%
GCTCAAGTTCTTCATTCTCA+AGG + chr7_1:990071-990090 None:intergenic 40.0%
GACACATATAATGAGACGGA+GGG + chr7_1:990220-990239 None:intergenic 40.0%
TGACACATATAATGAGACGG+AGG + chr7_1:990221-990240 None:intergenic 40.0%
ATTGGAGTGGTTGAAAGTAG+TGG - chr7_1:990330-990349 Msa1003920:CDS 40.0%
GGTTGAGACAATGCAATGAT+CGG - chr7_1:990449-990468 Msa1003920:CDS 40.0%
TCAACTAGTCCATGAAGAAG+GGG + chr7_1:990643-990662 None:intergenic 40.0%
CATCAACTAGTCCATGAAGA+AGG + chr7_1:990645-990664 None:intergenic 40.0%
ATTGGGGGAAAAGCCATTGA+AGG - chr7_1:986165-986184 Msa1003920:intron 45.0%
CACAGAAAAAACTGCTGCTG+AGG - chr7_1:986534-986553 Msa1003920:CDS 45.0%
! GTTTTGCGACTCTCCTTTTC+AGG - chr7_1:986756-986775 Msa1003920:intron 45.0%
AATAGACGCTCCCAAAGTTC+AGG + chr7_1:986799-986818 None:intergenic 45.0%
! TTTTTGCTGACCATTGCCTG+TGG + chr7_1:987305-987324 None:intergenic 45.0%
GAACCAGTTACCTTAGAGTC+AGG - chr7_1:988063-988082 Msa1003920:CDS 45.0%
!! TGACCTGACTCTAAGGTAAC+TGG + chr7_1:988069-988088 None:intergenic 45.0%
AACAGAACATGTCCGGTAAC+AGG - chr7_1:988132-988151 Msa1003920:CDS 45.0%
CGAATTTCCCACAGTTTGAG+AGG + chr7_1:988259-988278 None:intergenic 45.0%
GGGTTCTTTCGTTTCTCTGT+AGG - chr7_1:988394-988413 Msa1003920:CDS 45.0%
CTCTGTAGGAGGTTTGAACA+AGG - chr7_1:988408-988427 Msa1003920:CDS 45.0%
AATAAGAGGACAGCGATGAG+GGG + chr7_1:989105-989124 None:intergenic 45.0%
GTAATAAGAGGACAGCGATG+AGG + chr7_1:989107-989126 None:intergenic 45.0%
!! CTTAGCCTTGCATGATGTTG+AGG - chr7_1:989205-989224 Msa1003920:CDS 45.0%
!!! TGTGGCCATTTTTCTTCCAC+TGG - chr7_1:989563-989582 Msa1003920:CDS 45.0%
!! ATCTCCTAGCCTTGATGAAG+AGG - chr7_1:989652-989671 Msa1003920:CDS 45.0%
TGATCCTCTTCATCAAGGCT+AGG + chr7_1:989659-989678 None:intergenic 45.0%
GCCTTGATGAAGAGGATCAA+CGG - chr7_1:989660-989679 Msa1003920:CDS 45.0%
GAGATGATAGCTAAGAAGGC+AGG + chr7_1:990033-990052 None:intergenic 45.0%
GCTATCATCTCTCAGCTGAA+AGG - chr7_1:990042-990061 Msa1003920:CDS 45.0%
GATATTGCTCCCCTTCTTCA+TGG - chr7_1:990631-990650 Msa1003920:CDS 45.0%
!!! TTTTTGTTTTTTTTTTTTAA+TGG - chr7_1:989714-989733 Msa1003920:CDS 5.0%
! TTTGGAGCAGCTTCTTGCAC+AGG - chr7_1:985775-985794 Msa1003920:CDS 50.0%
AGCAGCTTCTTGCACAGGAA+GGG - chr7_1:985780-985799 Msa1003920:CDS 50.0%
CAGGAAGGGTTCAAAGCAAG+CGG - chr7_1:985794-985813 Msa1003920:CDS 50.0%
! CAAGCGGCAGAAAAGTGCAA+AGG - chr7_1:985810-985829 Msa1003920:CDS 50.0%
!! AGAGCGCAATTCTGAGACCA+AGG - chr7_1:986480-986499 Msa1003920:CDS 50.0%
AATATCGTCCGCGCCTGAAA+AGG + chr7_1:986772-986791 None:intergenic 50.0%
GACAGCGGAAAGGAACATCA+AGG - chr7_1:987711-987730 Msa1003920:intron 50.0%
CAAGGACAGCTGCAGAAGAA+TGG - chr7_1:987729-987748 Msa1003920:intron 50.0%
ATAACGGCGCTATAGCGTAG+TGG - chr7_1:988783-988802 Msa1003920:intron 50.0%
! TGACGGATCGCAGAGTATAG+CGG + chr7_1:988908-988927 None:intergenic 50.0%
! GCGATGAGGGGCTTTTCAAT+TGG + chr7_1:989093-989112 None:intergenic 50.0%
GCCGTTGATCCTCTTCATCA+AGG + chr7_1:989664-989683 None:intergenic 50.0%
GAGCAGCTTCTTGCACAGGA+AGG - chr7_1:985779-985798 Msa1003920:CDS 55.0%
CTGTGGCGAGAATGGTTCGT+TGG + chr7_1:987288-987307 None:intergenic 55.0%
CAACGAACCATTCTCGCCAC+AGG - chr7_1:987286-987305 Msa1003920:intron 55.0%
ACCATTCTCGCCACAGGCAA+TGG - chr7_1:987292-987311 Msa1003920:intron 55.0%
ACCATTGCCTGTGGCGAGAA+TGG + chr7_1:987296-987315 None:intergenic 55.0%
GGCTGTGAATGCCATTGCAG+AGG - chr7_1:989475-989494 Msa1003920:CDS 55.0%
GGCATCAAGTGCCTCTGCAA+TGG + chr7_1:989489-989508 None:intergenic 55.0%
!! GCGACTCTCCTTTTCAGGCG+CGG - chr7_1:986761-986780 Msa1003920:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 985764 990717 985764 ID=Msa1003920;Name=Msa1003920
chr7_1 mRNA 985764 990717 985764 ID=Msa1003920-mRNA-1;Parent=Msa1003920;Name=Msa1003920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.14|0|1|1|1|8|0|1110
chr7_1 exon 989428 990717 989428 ID=Msa1003920-mRNA-1:exon:471;Parent=Msa1003920-mRNA-1
chr7_1 exon 988943 989233 988943 ID=Msa1003920-mRNA-1:exon:470;Parent=Msa1003920-mRNA-1
chr7_1 exon 988579 988765 988579 ID=Msa1003920-mRNA-1:exon:469;Parent=Msa1003920-mRNA-1
chr7_1 exon 987865 988480 987865 ID=Msa1003920-mRNA-1:exon:468;Parent=Msa1003920-mRNA-1
chr7_1 exon 987341 987485 987341 ID=Msa1003920-mRNA-1:exon:467;Parent=Msa1003920-mRNA-1
chr7_1 exon 986778 987044 986778 ID=Msa1003920-mRNA-1:exon:466;Parent=Msa1003920-mRNA-1
chr7_1 exon 986235 986652 986235 ID=Msa1003920-mRNA-1:exon:465;Parent=Msa1003920-mRNA-1
chr7_1 exon 985764 985882 985764 ID=Msa1003920-mRNA-1:exon:464;Parent=Msa1003920-mRNA-1
chr7_1 CDS 989428 990717 989428 ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1 CDS 988943 989233 988943 ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1 CDS 988579 988765 988579 ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1 CDS 987865 988480 987865 ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1 CDS 987341 987485 987341 ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1 CDS 986778 987044 986778 ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1 CDS 986235 986652 986235 ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
chr7_1 CDS 985764 985882 985764 ID=Msa1003920-mRNA-1:cds;Parent=Msa1003920-mRNA-1
Gene Sequence

>Msa1003920

ATGGCTTCATCTTTGGAGCAGCTTCTTGCACAGGAAGGGTTCAAAGCAAGCGGCAGAAAAGTGCAAAGGTCAAGATCTTCTTTCCATCATGGTAATTCAAGTGATCCTCTTCACTCTTTGGAAGATAGACTGTGTGTATCATCAAGTGAAAGAATTAAAACACAGAAAACAAAGTCTAAAACAGCCTCAAGATATCAGATAAGCAATACAAGTGACAATAAAAACATGAGATCAAGTGATAATAATGTTTTTATAGGAAACAAGTTAAATAACGAAGGGTCGAAGAACAGTGAATCTGAGAAGAACAAGTCTTACAATTCATCAGATAGTGATAGTGGATTTGACGATGCTTATTCAAACCAAGTGTCTAATGTGAAAAGAGGCAAAGAAAAGAAGGAACAATTGGGGGAAAAGCCATTGAAGGATTCATATATGCTTAGACAATTGAGTGGAAATAGAAAGAATATAAAACATCAAGAAAAATCATACTCTAGATCAAATAGTAATAGCAAAAACTATGAAGATAGCAAGAACAAAAATAGCAATCATGTTATGCAATTGCAAGATGCTTCTAGTCTTGCTATTGATGAAATTGCCGTGAAAGCACTAGTTTCCATTCTGAATGGATACATAGAAAGTTTTCTAACGGATGAAGATTTTCGGTCGGCGTTGCGCCACAATTGTTTCTCCTCTTTGAATTTCATTCAACTTGAGGAAGAGCGCAATTCTGAGACCAAGGTGATTACAAGTCTTGAGCAAGCAATTGAGTGCACAGAAAAAACTGCTGCTGAGGAAACTATATCTGCAACACATCTTAAAAGAGCAACAATGCAGCTTAGCATTATTACTGGTTTGAGTTTGAATGATCTCAAGTACGATTTTACGTGCGGGATTCAAAATTTCAAGTTATCAGCTTGTGCTCATCTTTACCTCAGTGTTGTATATTTGATCCAAAGAAAAAAGAAAGTTTCGGCGAAGCATCTTTTGCAAGTGTTTTGCGACTCTCCTTTTCAGGCGCGGACGATATTGTTGCCTGAACTTTGGGAGCGTCTATTTTCTTCGCAACTTTCTGATTTGAAGAAATGGTATGACAACAAGGAAAGTGAAATTGTTTTAGATACACAAAACAAAGCAAGAAAGATAAAGATTCTCCAGAAAGTGTATAATGAAAGTTTGGATTCAGGAACTCAATTATTTGCTTTATATTACAAAGATTGGCTCAGTGAAGGAGTAGAAACTCCAACTATTCCTTCCATCGGAATTCCATCATTATCCATTACGAGTCGACAGGGAAGTTCACTTGGTCATTCTTTTGAGTCTTCTAGCTCCAACGAACCATTCTCGCCACAGGCAATGGTCAGCAAAAAACTTTATGATTCTTTCTTTGGTAGTAAACCTCAAGTCTATGAAGTTGAAGTTGATGAGGATGAAGATAGCTTTGAAAACTGTGAGAGAGGTTCTTATGGTTCGACCATCGTTAAAAAAACATTAATATATGAATCAGAAACTGTTAAATATATCGATCAAAGTACTGAAGAGTTCACTCCAAGAGTACCAGTTCATGAATTCTATATGCCTGTGCGGAAAGGAACATCAAGGACAGCTGCAGAAGAATGGAAAGAGAAGAATTCCAGAAATGGCACTAGAAAATATTTCTCCATAGAAACTAATTTAAACAGTCACATATCTAATGATCTACCACATGAAAAAGCAAATGAAATTTCTATCAAAAAGATGCAGCCAAATAAGATAACCCCTACTATTGATGGATCATATTCTCCAAGCATACCACAGGAATTTATTTGTCCTCTGACAAGAAATATCTTTGAGGAACCAGTTACCTTAGAGTCAGGTCAAACCTTTGAAAGAAAAGCCATCAAGGCATGGTTTCAAAAGGGAAACAGAACATGTCCGGTAACAGGAAATACTTTAGAATGTGTAGTCATACCATTTAGCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAGATTTTGATCGCCTTCTTGATTTTGCCTCTCAAACTGTGGGAAATTCGAAGGAAATTAAGTTAAAAAAGCGCGATGAGGCTATCGTTTTCAAGTTACAAGGTCTATTATCTTCCTTGAAAGAAGAGGAAAAATCAACTTATGCTAAGCATATAATCTCTTTAGGGGTTCTTTCGTTTCTCTGTAGGAGGTTTGAACAAGGAAATTTGGAAGAAAAATCACATGTGATCGAGATCTTGTTAAATTGTATCCGATCAGATTCTAGTTGCATATATAAGATAGCAAGGGGTGTCAACAGAAAATTTCTTCTTGAGCTTCTTCACAGTAAGGATGTTACCCCAACAAAAAATGCAATACTATTCCTTACTGAACTTTTGTCAATGAAGAGAAGAAAGGATGTCACTTCTTTCATAAGTGGCTTGGTGGGTGAAGATGTAGTTAGTACAATGCATATTGTGCTCATGCATCTTAAGAATTCTTCTCCAATTGAAAAGCCCCTCATCGCTGTCCTCTTATTACACTTTGAACTACTGGTTGAGCAGCCTCAAAAGTTTAGCATATACATAGAGATGGCTGTGAATGCCATTGCAGAGGCACTTGATGCCAGCTTAAATGATGACAAGGTTCAAAAGAAGTGTTGCAGAGCTATTTTAATCTTGTGTGGCCATTTTTCTTCCACTGGAATGATAACAAATAATACTACCATCTTAAAGAAAGCAGGTTATAATAATGGTAGCTCAGAATTGAAATCTCCTAGCCTTGATGAAGAGGATCAACGGCTAAATGTAACCATTTCGTCGGAAGATGAAGAAGAAGAAATGGATGAAGAGTTCATGGCAAACTTGTTAGAATCAATGATTGGTGATGGAGAAAGTCTATTTTTGAAGACCATATCTAGATGTTTAGATTCTAGACATGTAGATTTGATGAGGGCTTGTCTAATAACTGTTACATGGTTGAGTTCCTCACTTTCTAAACAGTATAATGCTGGATTGCATCTTCCTGCCTTCTTAGCTATCATCTCTCAGCTGAAAGGAATCCTTGAGAATGAAGAACTTGAGCTCAAGACTCTTGCATCTATGTCCTTGTTCAACTTCAGTAAAATATCAGGTTTGGCACCATCACCGTTTATTTGTGATAAAAATCTTGCTAATTTCGGAACTATTGAAAGCAATTTTAAATGTTATTCCCTCCGTCTCATTATATGTGTCATTTTAGAATGCAGAACACTTTTGAAGATTATGGCAGACGATATTGCTCCCCTTCTTCATGGACTAGTTGATGTATTATGGACTGCTAAGAAACTGCATGCCATTTTGTATAGGGAGAATCTGTAG

Protein sequence

>Msa1003920

MASSLEQLLAQEGFKASGRKVQRSRSSFHHGNSSDPLHSLEDRLCVSSSERIKTQKTKSKTASRYQISNTSDNKNMRSSDNNVFIGNKLNNEGSKNSESEKNKSYNSSDSDSGFDDAYSNQVSNVKRGKEKKEQLGEKPLKDSYMLRQLSGNRKNIKHQEKSYSRSNSNSKNYEDSKNKNSNHVMQLQDASSLAIDEIAVKALVSILNGYIESFLTDEDFRSALRHNCFSSLNFIQLEEERNSETKVITSLEQAIECTEKTAAEETISATHLKRATMQLSIITGLSLNDLKYDFTCGIQNFKLSACAHLYLSVVYLIQRKKKVSAKHLLQVFCDSPFQARTILLPELWERLFSSQLSDLKKWYDNKESEIVLDTQNKARKIKILQKVYNESLDSGTQLFALYYKDWLSEGVETPTIPSIGIPSLSITSRQGSSLGHSFESSSSNEPFSPQAMVSKKLYDSFFGSKPQVYEVEVDEDEDSFENCERGSYGSTIVKKTLIYESETVKYIDQSTEEFTPRVPVHEFYMPVRKGTSRTAAEEWKEKNSRNGTRKYFSIETNLNSHISNDLPHEKANEISIKKMQPNKITPTIDGSYSPSIPQEFICPLTRNIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNTLECVVIPFSNLILKRLIDNWKSEDFDRLLDFASQTVGNSKEIKLKKRDEAIVFKLQGLLSSLKEEEKSTYAKHIISLGVLSFLCRRFEQGNLEEKSHVIEILLNCIRSDSSCIYKIARGVNRKFLLELLHSKDVTPTKNAILFLTELLSMKRRKDVTSFISGLVGEDVVSTMHIVLMHLKNSSPIEKPLIAVLLLHFELLVEQPQKFSIYIEMAVNAIAEALDASLNDDKVQKKCCRAILILCGHFSSTGMITNNTTILKKAGYNNGSSELKSPSLDEEDQRLNVTISSEDEEEEMDEEFMANLLESMIGDGESLFLKTISRCLDSRHVDLMRACLITVTWLSSSLSKQYNAGLHLPAFLAIISQLKGILENEELELKTLASMSLFNFSKISGLAPSPFICDKNLANFGTIESNFKCYSLRLIICVILECRTLLKIMADDIAPLLHGLVDVLWTAKKLHAILYRENL*