Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787730 | sp|Q9FM80|MTEF9_ARATH | 63.291 | 474 | 145 | 3 | 33 | 497 | 42 | 495 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787730 | G7K4F3 | 96.436 | 505 | 9 | 3 | 1 | 498 | 1 | 503 | 0.0 | 977 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0787730 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0787730 | -0.800332 | 1.514384e-48 | -8.615850e-47 |
| Msa0006700 | Msa0787730 | 0.801337 | 9.444947e-49 | -8.615850e-47 |
| Msa0008850 | Msa0787730 | 0.816548 | 5.226284e-52 | -8.615850e-47 |
| Msa0020630 | Msa0787730 | 0.811119 | 8.211599e-51 | -8.615850e-47 |
| Msa0027540 | Msa0787730 | 0.801909 | 7.209116e-49 | -8.615850e-47 |
| Msa0029620 | Msa0787730 | 0.815382 | 9.515722e-52 | -8.615850e-47 |
| Msa0032610 | Msa0787730 | 0.800099 | 1.689299e-48 | -8.615850e-47 |
| Msa0044710 | Msa0787730 | 0.814812 | 1.273240e-51 | -8.615850e-47 |
| Msa0050720 | Msa0787730 | 0.808878 | 2.493861e-50 | -8.615850e-47 |
| Msa0055280 | Msa0787730 | 0.814643 | 1.387586e-51 | -8.615850e-47 |
| Msa0067150 | Msa0787730 | 0.817456 | 3.266642e-52 | -8.615850e-47 |
| Msa0068410 | Msa0787730 | 0.827506 | 1.506519e-54 | -8.615850e-47 |
| Msa0075310 | Msa0787730 | 0.800762 | 1.237913e-48 | -8.615850e-47 |
| Msa0101060 | Msa0787730 | 0.821591 | 3.722059e-53 | -8.615850e-47 |
| Msa0112420 | Msa0787730 | 0.816784 | 4.625250e-52 | -8.615850e-47 |
| Msa0114250 | Msa0787730 | 0.805805 | 1.117879e-49 | -8.615850e-47 |
| Msa0620640 | Msa0787730 | 0.806328 | 8.677283e-50 | -8.615850e-47 |
| Msa0620750 | Msa0787730 | 0.809650 | 1.703574e-50 | -8.615850e-47 |
| Msa0624730 | Msa0787730 | 0.800239 | 1.582465e-48 | -8.615850e-47 |
| Msa0626230 | Msa0787730 | 0.822803 | 1.948268e-53 | -8.615850e-47 |
| Msa0638280 | Msa0787730 | 0.816023 | 6.846274e-52 | -8.615850e-47 |
| Msa0638320 | Msa0787730 | 0.814253 | 1.692395e-51 | -8.615850e-47 |
| Msa0650650 | Msa0787730 | 0.811281 | 7.574311e-51 | -8.615850e-47 |
| Msa0650740 | Msa0787730 | 0.808362 | 3.215179e-50 | -8.615850e-47 |
| Msa0677270 | Msa0787730 | 0.814795 | 1.284573e-51 | -8.615850e-47 |
| Msa0714600 | Msa0787730 | 0.816423 | 5.573668e-52 | -8.615850e-47 |
| Msa0726610 | Msa0787730 | 0.807186 | 5.715312e-50 | -8.615850e-47 |
| Msa0728280 | Msa0787730 | 0.804344 | 2.259296e-49 | -8.615850e-47 |
| Msa0728380 | Msa0787730 | 0.812166 | 4.860876e-51 | -8.615850e-47 |
| Msa0728540 | Msa0787730 | 0.802244 | 6.149827e-49 | -8.615850e-47 |
| Msa0739610 | Msa0787730 | 0.832652 | 8.367020e-56 | -8.615850e-47 |
| Msa0743640 | Msa0787730 | 0.815605 | 8.486756e-52 | -8.615850e-47 |
| Msa0743650 | Msa0787730 | 0.916696 | 1.305106e-85 | -8.615850e-47 |
| Msa0750380 | Msa0787730 | 0.804840 | 1.780640e-49 | -8.615850e-47 |
| Msa0754350 | Msa0787730 | 0.810573 | 1.077554e-50 | -8.615850e-47 |
| Msa0776480 | Msa0787730 | 0.803231 | 3.847495e-49 | -8.615850e-47 |
| Msa0780140 | Msa0787730 | 0.812364 | 4.399340e-51 | -8.615850e-47 |
| Msa0787720 | Msa0787730 | 0.801282 | 9.690650e-49 | -8.615850e-47 |
| Msa0787730 | Msa0789270 | 0.821791 | 3.346135e-53 | -8.615850e-47 |
| Msa0787730 | Msa0789280 | 0.823614 | 1.259764e-53 | -8.615850e-47 |
| Msa0787730 | Msa0789290 | 0.817800 | 2.733237e-52 | -8.615850e-47 |
| Msa0787730 | Msa0789300 | 0.817579 | 3.065751e-52 | -8.615850e-47 |
| Msa0787730 | Msa0792510 | 0.812028 | 5.209313e-51 | -8.615850e-47 |
| Msa0787730 | Msa0813190 | 0.817998 | 2.465660e-52 | -8.615850e-47 |
| Msa0787730 | Msa0824140 | 0.802197 | 6.289760e-49 | -8.615850e-47 |
| Msa0787730 | Msa0824760 | 0.805414 | 1.350505e-49 | -8.615850e-47 |
| Msa0787730 | Msa0824770 | 0.832573 | 8.751831e-56 | -8.615850e-47 |
| Msa0787730 | Msa0828570 | 0.819191 | 1.322263e-52 | -8.615850e-47 |
| Msa0787730 | Msa0830720 | 0.810246 | 1.267972e-50 | -8.615850e-47 |
| Msa0787730 | Msa0834460 | 0.803623 | 3.191099e-49 | -8.615850e-47 |
| Msa0787730 | Msa0847200 | 0.813088 | 3.055623e-51 | -8.615850e-47 |
| Msa0787730 | Msa0863250 | 0.808978 | 2.374285e-50 | -8.615850e-47 |
| Msa0787730 | Msa0863760 | 0.812646 | 3.818476e-51 | -8.615850e-47 |
| Msa0787730 | Msa0863770 | 0.915957 | 3.172167e-85 | -8.615850e-47 |
| Msa0787730 | Msa0887070 | 0.814573 | 1.438373e-51 | -8.615850e-47 |
| Msa0787730 | Msa0899700 | 0.812338 | 4.457494e-51 | -8.615850e-47 |
| Msa0787730 | Msa0950410 | 0.820231 | 7.652405e-53 | -8.615850e-47 |
| Msa0787730 | Msa0950620 | 0.809368 | 1.958395e-50 | -8.615850e-47 |
| Msa0787730 | Msa0964680 | 0.832351 | 9.933204e-56 | -8.615850e-47 |
| Msa0787730 | Msa1004210 | 0.800941 | 1.137702e-48 | -8.615850e-47 |
| Msa0787730 | Msa1037020 | 0.814215 | 1.725645e-51 | -8.615850e-47 |
| Msa0787730 | Msa1046610 | 0.804211 | 2.408074e-49 | -8.615850e-47 |
| Msa0787730 | Msa1130210 | -0.811641 | 6.325593e-51 | -8.615850e-47 |
| Msa0787730 | Msa1164530 | 0.814394 | 1.575554e-51 | -8.615850e-47 |
| Msa0787730 | Msa1177240 | 0.807231 | 5.593075e-50 | -8.615850e-47 |
| Msa0787730 | Msa1182830 | 0.811059 | 8.458662e-51 | -8.615850e-47 |
| Msa0787730 | Msa1222030 | -0.802773 | 4.785749e-49 | -8.615850e-47 |
| Msa0787730 | Msa1241820 | 0.805616 | 1.224947e-49 | -8.615850e-47 |
| Msa0787730 | Msa1282920 | 0.818863 | 1.570084e-52 | -8.615850e-47 |
| Msa0787730 | Msa1335970 | -0.809824 | 1.563297e-50 | -8.615850e-47 |
| Msa0787730 | Msa1358870 | -0.800790 | 1.221535e-48 | -8.615850e-47 |
| Msa0787730 | Msa1397540 | 0.833937 | 4.003290e-56 | -8.615850e-47 |
| Msa0787730 | Msa1421870 | 0.803178 | 3.946291e-49 | -8.615850e-47 |
| Msa0787730 | Msa1427830 | 0.857046 | 2.131027e-62 | -8.615850e-47 |
| Msa0787730 | Msa1440610 | 0.808552 | 2.927613e-50 | -8.615850e-47 |
| Msa0787730 | Msa1450020 | 0.802485 | 5.487594e-49 | -8.615850e-47 |
| Msa0787730 | Msa1454110 | 0.860920 | 1.475210e-63 | -8.615850e-47 |
| Msa0125440 | Msa0787730 | 0.804806 | 1.810263e-49 | -8.615850e-47 |
| Msa0159750 | Msa0787730 | 0.812193 | 4.794716e-51 | -8.615850e-47 |
| Msa0168100 | Msa0787730 | 0.822221 | 2.660067e-53 | -8.615850e-47 |
| Msa0169620 | Msa0787730 | 0.812288 | 4.570803e-51 | -8.615850e-47 |
| Msa0182930 | Msa0787730 | 0.800682 | 1.285284e-48 | -8.615850e-47 |
| Msa0198440 | Msa0787730 | 0.814245 | 1.699320e-51 | -8.615850e-47 |
| Msa0223100 | Msa0787730 | 0.843135 | 1.687966e-58 | -8.615850e-47 |
| Msa0223290 | Msa0787730 | 0.841275 | 5.246264e-58 | -8.615850e-47 |
| Msa0223380 | Msa0787730 | 0.847018 | 1.507812e-59 | -8.615850e-47 |
| Msa0377280 | Msa0787730 | 0.807478 | 4.956565e-50 | -8.615850e-47 |
| Msa0379540 | Msa0787730 | 0.808967 | 2.387516e-50 | -8.615850e-47 |
| Msa0404220 | Msa0787730 | 0.811179 | 7.967822e-51 | -8.615850e-47 |
| Msa0404690 | Msa0787730 | 0.803882 | 2.820142e-49 | -8.615850e-47 |
| Msa0418430 | Msa0787730 | 0.801735 | 7.827682e-49 | -8.615850e-47 |
| Msa0419620 | Msa0787730 | -0.818912 | 1.530295e-52 | -8.615850e-47 |
| Msa0431520 | Msa0787730 | 0.803454 | 3.460203e-49 | -8.615850e-47 |
| Msa0431830 | Msa0787730 | 0.811921 | 5.496757e-51 | -8.615850e-47 |
| Msa0462590 | Msa0787730 | 0.812163 | 4.867030e-51 | -8.615850e-47 |
| Msa0467920 | Msa0787730 | -0.821780 | 3.366414e-53 | -8.615850e-47 |
| Msa0482680 | Msa0787730 | 0.813140 | 2.976377e-51 | -8.615850e-47 |
| Msa0240780 | Msa0787730 | 0.838666 | 2.511210e-57 | -8.615850e-47 |
| Msa0252180 | Msa0787730 | 0.800172 | 1.632676e-48 | -8.615850e-47 |
| Msa0265210 | Msa0787730 | 0.821984 | 3.018823e-53 | -8.615850e-47 |
| Msa0265580 | Msa0787730 | 0.816221 | 6.182422e-52 | -8.615850e-47 |
| Msa0278670 | Msa0787730 | 0.810904 | 9.140472e-51 | -8.615850e-47 |
| Msa0282170 | Msa0787730 | 0.820447 | 6.826517e-53 | -8.615850e-47 |
| Msa0288240 | Msa0787730 | 0.819640 | 1.044264e-52 | -8.615850e-47 |
| Msa0288330 | Msa0787730 | 0.816330 | 5.845156e-52 | -8.615850e-47 |
| Msa0302650 | Msa0787730 | 0.818719 | 1.692763e-52 | -8.615850e-47 |
| Msa0318070 | Msa0787730 | 0.813524 | 2.450957e-51 | -8.615850e-47 |
| Msa0326670 | Msa0787730 | 0.813809 | 2.121015e-51 | -8.615850e-47 |
| Msa0336270 | Msa0787730 | 0.800163 | 1.639486e-48 | -8.615850e-47 |
| Msa0519220 | Msa0787730 | 0.806813 | 6.854827e-50 | -8.615850e-47 |
| Msa0530380 | Msa0787730 | 0.815308 | 9.880451e-52 | -8.615850e-47 |
| Msa0530950 | Msa0787730 | 0.801608 | 8.310404e-49 | -8.615850e-47 |
| Msa0549740 | Msa0787730 | 0.801012 | 1.100601e-48 | -8.615850e-47 |
| Msa0577230 | Msa0787730 | 0.804213 | 2.406478e-49 | -8.615850e-47 |
| Msa0579340 | Msa0787730 | 0.832639 | 8.427520e-56 | -8.615850e-47 |
| Msa0583740 | Msa0787730 | 0.804769 | 1.842695e-49 | -8.615850e-47 |
| Msa0593810 | Msa0787730 | 0.807836 | 4.159852e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787730 | MtrunA17_Chr5g0445491 | 96.436 | 505 | 9 | 3 | 1 | 498 | 1 | 503 | 0.0 | 977 |
| Msa0787730 | MtrunA17_Chr2g0294671 | 32.000 | 225 | 144 | 6 | 225 | 446 | 215 | 433 | 4.35e-26 | 111 |
| Msa0787730 | MtrunA17_Chr2g0294671 | 30.256 | 195 | 125 | 5 | 254 | 444 | 208 | 395 | 2.31e-17 | 84.7 |
| Msa0787730 | MtrunA17_Chr2g0294671 | 27.706 | 231 | 137 | 7 | 174 | 398 | 272 | 478 | 4.86e-17 | 83.6 |
| Msa0787730 | MtrunA17_Chr2g0311181 | 26.639 | 244 | 161 | 6 | 222 | 464 | 70 | 296 | 5.32e-25 | 105 |
| Msa0787730 | MtrunA17_Chr5g0428941 | 24.924 | 329 | 202 | 7 | 186 | 476 | 171 | 492 | 5.65e-25 | 108 |
| Msa0787730 | MtrunA17_Chr5g0428941 | 25.263 | 190 | 136 | 3 | 216 | 405 | 134 | 317 | 2.83e-11 | 65.9 |
| Msa0787730 | MtrunA17_Chr4g0043941 | 28.571 | 266 | 176 | 6 | 183 | 443 | 42 | 298 | 5.04e-24 | 102 |
| Msa0787730 | MtrunA17_Chr4g0043941 | 28.194 | 227 | 159 | 2 | 221 | 444 | 41 | 266 | 5.44e-19 | 88.2 |
| Msa0787730 | MtrunA17_Chr5g0417641 | 29.319 | 191 | 132 | 1 | 256 | 446 | 88 | 275 | 7.03e-21 | 93.2 |
| Msa0787730 | MtrunA17_Chr6g0448821 | 28.378 | 222 | 155 | 3 | 222 | 443 | 119 | 336 | 1.35e-20 | 93.6 |
| Msa0787730 | MtrunA17_Chr4g0034981 | 23.630 | 292 | 185 | 5 | 189 | 444 | 277 | 566 | 2.20e-19 | 91.3 |
| Msa0787730 | MtrunA17_Chr4g0034981 | 24.476 | 286 | 198 | 7 | 171 | 445 | 184 | 462 | 2.92e-12 | 68.9 |
| Msa0787730 | MtrunA17_Chr1g0212691 | 26.484 | 219 | 154 | 4 | 225 | 441 | 215 | 428 | 1.07e-17 | 85.9 |
| Msa0787730 | MtrunA17_Chr1g0212691 | 24.681 | 235 | 167 | 6 | 222 | 452 | 108 | 336 | 5.99e-15 | 77.4 |
| Msa0787730 | MtrunA17_Chr8g0391881 | 27.064 | 218 | 152 | 4 | 225 | 440 | 162 | 374 | 2.94e-17 | 83.6 |
| Msa0787730 | MtrunA17_Chr8g0391881 | 25.683 | 183 | 133 | 3 | 222 | 403 | 86 | 266 | 2.88e-13 | 71.2 |
| Msa0787730 | MtrunA17_Chr7g0250261 | 25.984 | 254 | 173 | 7 | 220 | 470 | 42 | 283 | 7.55e-16 | 78.2 |
| Msa0787730 | MtrunA17_Chr0c29g0494001 | 25.984 | 254 | 173 | 7 | 220 | 470 | 42 | 283 | 7.55e-16 | 78.2 |
| Msa0787730 | MtrunA17_Chr2g0304101 | 23.767 | 223 | 155 | 4 | 222 | 440 | 70 | 281 | 8.64e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0787730 | AT5G55580.1 | 63.291 | 474 | 145 | 3 | 33 | 497 | 42 | 495 | 0.0 | 571 |
| Msa0787730 | AT5G55580.2 | 73.669 | 357 | 90 | 1 | 141 | 497 | 37 | 389 | 0.0 | 551 |
| Msa0787730 | AT5G55580.3 | 58.981 | 373 | 124 | 3 | 33 | 396 | 42 | 394 | 2.99e-138 | 404 |
| Msa0787730 | AT2G21710.1 | 26.148 | 283 | 199 | 5 | 190 | 469 | 320 | 595 | 1.78e-26 | 113 |
| Msa0787730 | AT2G21710.1 | 23.256 | 387 | 271 | 11 | 101 | 476 | 127 | 498 | 1.97e-13 | 73.2 |
| Msa0787730 | AT4G02990.2 | 25.373 | 335 | 201 | 9 | 182 | 476 | 175 | 500 | 6.10e-24 | 105 |
| Msa0787730 | AT4G02990.1 | 25.373 | 335 | 201 | 9 | 182 | 476 | 175 | 500 | 6.10e-24 | 105 |
| Msa0787730 | AT4G38160.4 | 27.068 | 266 | 180 | 6 | 184 | 443 | 43 | 300 | 5.68e-23 | 100 |
| Msa0787730 | AT4G38160.4 | 29.741 | 232 | 155 | 6 | 221 | 446 | 41 | 270 | 8.14e-21 | 94.0 |
| Msa0787730 | AT4G38160.1 | 27.068 | 266 | 180 | 6 | 184 | 443 | 43 | 300 | 5.68e-23 | 100 |
| Msa0787730 | AT4G38160.1 | 29.741 | 232 | 155 | 6 | 221 | 446 | 41 | 270 | 8.14e-21 | 94.0 |
| Msa0787730 | AT4G38160.2 | 27.068 | 266 | 180 | 6 | 184 | 443 | 43 | 300 | 7.20e-23 | 100 |
| Msa0787730 | AT4G38160.2 | 29.741 | 232 | 155 | 6 | 221 | 446 | 41 | 270 | 9.28e-21 | 94.4 |
| Msa0787730 | AT4G38160.3 | 27.068 | 266 | 180 | 6 | 184 | 443 | 43 | 300 | 1.97e-22 | 99.4 |
| Msa0787730 | AT4G38160.3 | 29.741 | 232 | 155 | 6 | 221 | 446 | 41 | 270 | 1.88e-20 | 93.6 |
| Msa0787730 | AT1G78930.1 | 27.523 | 218 | 154 | 3 | 226 | 443 | 341 | 554 | 2.11e-22 | 101 |
| Msa0787730 | AT1G78930.1 | 28.485 | 165 | 110 | 3 | 215 | 376 | 397 | 556 | 2.13e-14 | 76.3 |
| Msa0787730 | AT2G03050.1 | 26.339 | 224 | 155 | 5 | 222 | 443 | 33 | 248 | 2.76e-20 | 91.3 |
| Msa0787730 | AT2G03050.2 | 26.339 | 224 | 155 | 5 | 222 | 443 | 34 | 249 | 3.08e-20 | 91.3 |
| Msa0787730 | AT2G44020.1 | 25.424 | 295 | 182 | 5 | 187 | 445 | 145 | 437 | 4.88e-20 | 93.6 |
| Msa0787730 | AT2G44020.1 | 25.957 | 235 | 152 | 8 | 215 | 446 | 83 | 298 | 2.50e-11 | 66.2 |
| Msa0787730 | AT2G21710.2 | 24.481 | 241 | 175 | 4 | 190 | 427 | 320 | 556 | 5.08e-20 | 93.6 |
| Msa0787730 | AT2G21710.2 | 23.256 | 387 | 271 | 11 | 101 | 476 | 127 | 498 | 4.86e-13 | 72.0 |
| Msa0787730 | AT4G14605.2 | 26.484 | 219 | 154 | 5 | 225 | 443 | 236 | 447 | 1.03e-19 | 92.4 |
| Msa0787730 | AT4G14605.2 | 26.222 | 225 | 137 | 6 | 180 | 398 | 262 | 463 | 9.77e-14 | 73.9 |
| Msa0787730 | AT4G14605.1 | 26.484 | 219 | 154 | 5 | 225 | 443 | 236 | 447 | 1.03e-19 | 92.4 |
| Msa0787730 | AT4G14605.1 | 26.222 | 225 | 137 | 6 | 180 | 398 | 262 | 463 | 9.77e-14 | 73.9 |
| Msa0787730 | AT2G21710.3 | 24.268 | 239 | 174 | 4 | 190 | 425 | 320 | 554 | 1.79e-19 | 92.0 |
| Msa0787730 | AT2G21710.3 | 23.256 | 387 | 271 | 11 | 101 | 476 | 127 | 498 | 3.64e-13 | 72.4 |
| Msa0787730 | AT2G34620.1 | 26.389 | 216 | 145 | 4 | 255 | 466 | 85 | 290 | 2.40e-19 | 89.0 |
| Msa0787730 | AT2G36000.1 | 27.200 | 250 | 158 | 8 | 222 | 465 | 74 | 305 | 1.43e-18 | 87.4 |
| Msa0787730 | AT2G36000.2 | 27.200 | 250 | 158 | 8 | 222 | 465 | 74 | 305 | 1.50e-18 | 87.0 |
| Msa0787730 | AT3G18870.1 | 25.591 | 254 | 131 | 8 | 225 | 470 | 69 | 272 | 2.60e-16 | 79.7 |
Find 99 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAGCACCTTTGGAATTA+AGG | 0.140140 | 5_2:+73751198 | Msa0787730:CDS |
| AGCAATAATTTGCCCTATTT+TGG | 0.169836 | 5_2:-73751437 | None:intergenic |
| GACTCACGTTGCTTTCTTAA+TGG | 0.188627 | 5_2:+73751396 | Msa0787730:CDS |
| CATGTGGTACAAATTGTTTC+AGG | 0.204396 | 5_2:-73752814 | None:intergenic |
| CATCTTCACAATGCTCTCTT+TGG | 0.219102 | 5_2:-73751653 | None:intergenic |
| TGACTTCAATCTCTTGTCTT+TGG | 0.225373 | 5_2:-73750328 | None:intergenic |
| CGTTGCTTTCTTAATGGGCT+TGG | 0.237557 | 5_2:+73751402 | Msa0787730:CDS |
| GGATGCTATTCTCTGACTTT+TGG | 0.242258 | 5_2:-73750699 | None:intergenic |
| ACATGTGCCTCTCATAAATT+TGG | 0.244120 | 5_2:-73751234 | None:intergenic |
| TAAACTTAAGAGCCAACTTA+TGG | 0.283678 | 5_2:+73752622 | Msa0787730:three_prime_UTR |
| TCCGACGTATTGACATTTCA+TGG | 0.299707 | 5_2:+73751590 | Msa0787730:CDS |
| CTCCTTAGGAAATTTATTCT+TGG | 0.307382 | 5_2:-73751727 | None:intergenic |
| ATCTTCACAATGCTCTCTTT+GGG | 0.327138 | 5_2:-73751652 | None:intergenic |
| ACTAAACAAGCTCACCTTTC+AGG | 0.329385 | 5_2:-73752506 | None:intergenic |
| GCTAAGGTACATCGGGTATT+TGG | 0.329609 | 5_2:-73752050 | None:intergenic |
| CCAAGAGGAAATGGTCCTTT+TGG | 0.331786 | 5_2:-73752133 | None:intergenic |
| CTTGATTACTTAAGCACCTT+TGG | 0.335021 | 5_2:+73751190 | Msa0787730:CDS |
| TCGTCCTCGTCATAAGTTCT+TGG | 0.344950 | 5_2:+73752093 | Msa0787730:CDS |
| ACTCACGTTGCTTTCTTAAT+GGG | 0.345489 | 5_2:+73751397 | Msa0787730:CDS |
| TAGATTACTTAATGAGTCTT+GGG | 0.347132 | 5_2:+73751296 | Msa0787730:CDS |
| GATGTACCTTAGCTTGTCTT+TGG | 0.348758 | 5_2:+73752060 | Msa0787730:CDS |
| GGCGTACCTAGTACCAAAAT+AGG | 0.359195 | 5_2:+73751424 | Msa0787730:CDS |
| GTTGCTTTCTTAATGGGCTT+GGG | 0.365837 | 5_2:+73751403 | Msa0787730:CDS |
| GTTGTCTGAAGAGATTCTTT+TGG | 0.368169 | 5_2:+73751147 | Msa0787730:CDS |
| GCATGATTAGAGGAAGGAAT+TGG | 0.374741 | 5_2:-73749696 | None:intergenic |
| TTGAAGTCAAAGACAGTTGC+AGG | 0.386479 | 5_2:+73750342 | Msa0787730:CDS |
| CAATCAACTTGCACGAGTAC+TGG | 0.402183 | 5_2:+73752306 | Msa0787730:three_prime_UTR |
| AGAAGCAGAAGCATGATTAG+AGG | 0.407915 | 5_2:-73749706 | None:intergenic |
| TGATGATGAAGATGAAGAAA+TGG | 0.419929 | 5_2:+73749842 | Msa0787730:CDS |
| GAATTTGTGGTTGCCTCAAA+AGG | 0.421558 | 5_2:-73751345 | None:intergenic |
| CTGCATTACAGTATTGATGA+TGG | 0.426933 | 5_2:+73751697 | Msa0787730:CDS |
| ACCGTGTATTCTAGAATTTG+TGG | 0.436537 | 5_2:-73751358 | None:intergenic |
| AGATATTTAATTGAGGAAGT+TGG | 0.438021 | 5_2:+73751514 | Msa0787730:CDS |
| ATAGATTACTTAATGAGTCT+TGG | 0.440723 | 5_2:+73751295 | Msa0787730:CDS |
| AGAATGTTGAAAGGATTGTA+AGG | 0.447642 | 5_2:-73749672 | None:intergenic |
| GCAGGTGCTATCTCTGTCCT+TGG | 0.454121 | 5_2:+73751961 | Msa0787730:intron |
| CAAAGAGAGCATTGTGAAGA+TGG | 0.456446 | 5_2:+73751654 | Msa0787730:CDS |
| ACTAGAGATCCAAGAGGAAA+TGG | 0.462060 | 5_2:-73752142 | None:intergenic |
| TTTATCATTGCTGTTTCAGT+TGG | 0.462519 | 5_2:+73752483 | Msa0787730:three_prime_UTR |
| TAGACAACAAGAAAAGGAAA+AGG | 0.464265 | 5_2:+73750637 | Msa0787730:CDS |
| CCAAAAGGACCATTTCCTCT+TGG | 0.467379 | 5_2:+73752133 | Msa0787730:CDS |
| TGACAAAAGGATTCATCAGT+TGG | 0.470816 | 5_2:-73752166 | None:intergenic |
| TTCGATGGAGAAAAGATATC+CGG | 0.473213 | 5_2:+73751123 | Msa0787730:CDS |
| AATTGTCCATGTATCATGTA+TGG | 0.474000 | 5_2:-73752782 | None:intergenic |
| TATGACGAGGACGAATTCTC+TGG | 0.474277 | 5_2:-73752084 | None:intergenic |
| TCCAGCCCATCGTTGACAAA+AGG | 0.483266 | 5_2:-73752179 | None:intergenic |
| AATTGAGGAAGTTGGCATCA+AGG | 0.486070 | 5_2:+73751522 | Msa0787730:CDS |
| TCAATTAAATATCTTACTGT+TGG | 0.487640 | 5_2:-73751505 | None:intergenic |
| GATGTTTCTTAACAAAGAGT+TGG | 0.488384 | 5_2:+73751624 | Msa0787730:CDS |
| TACAGATAGACAACAAGAAA+AGG | 0.490910 | 5_2:+73750631 | Msa0787730:intron |
| TTCCAAGAATAAATTTCCTA+AGG | 0.495242 | 5_2:+73751725 | Msa0787730:CDS |
| AATTAATGTATGTTCTGCAC+AGG | 0.499032 | 5_2:+73751267 | Msa0787730:CDS |
| ATTATACAGTTCATCAATGA+AGG | 0.506760 | 5_2:-73752664 | None:intergenic |
| AAAGCCGAAGTATTTGTACT+TGG | 0.508230 | 5_2:+73751994 | Msa0787730:CDS |
| GCGTACCTAGTACCAAAATA+GGG | 0.510052 | 5_2:+73751425 | Msa0787730:CDS |
| AACAGTAAGATATTTAATTG+AGG | 0.516231 | 5_2:+73751507 | Msa0787730:CDS |
| TTGTGATTCCTTAATTCCAA+AGG | 0.518718 | 5_2:-73751206 | None:intergenic |
| ACCAATCGAAAATCACCCTA+TGG | 0.522397 | 5_2:+73749795 | Msa0787730:CDS |
| TCTTTGGCATTAAGATCAGT+AGG | 0.525087 | 5_2:-73750312 | None:intergenic |
| ATGTGGTACAAATTGTTTCA+GGG | 0.525874 | 5_2:-73752813 | None:intergenic |
| CGGCTTTAGATTAGCTTCCA+AGG | 0.526666 | 5_2:-73751978 | None:intergenic |
| ATAAATTTCCTAAGGAGCAT+AGG | 0.526985 | 5_2:+73751733 | Msa0787730:CDS |
| AAATGAGAGAATCCATAAGT+TGG | 0.528482 | 5_2:-73752634 | None:intergenic |
| TTTACCAAGTACAAATACTT+CGG | 0.532246 | 5_2:-73751998 | None:intergenic |
| AAGACAAGCTAAGGTACATC+GGG | 0.535136 | 5_2:-73752057 | None:intergenic |
| GCTGTTTCAGTTGGCCTGAA+AGG | 0.536391 | 5_2:+73752492 | Msa0787730:three_prime_UTR |
| GTAGTTTCGTAGAAATTCGA+TGG | 0.537172 | 5_2:+73751108 | Msa0787730:intron |
| GTACATCGGGTATTTGGTCA+AGG | 0.541793 | 5_2:-73752044 | None:intergenic |
| GGAATTGGAAGAATGTTGAA+AGG | 0.542797 | 5_2:-73749681 | None:intergenic |
| TCCCTAAAGAAAGCTCCAAA+AGG | 0.551170 | 5_2:+73752118 | Msa0787730:CDS |
| TCTGGTCCAAAGACAAGCTA+AGG | 0.551617 | 5_2:-73752066 | None:intergenic |
| AGACAACAAGAAAAGGAAAA+GGG | 0.551962 | 5_2:+73750638 | Msa0787730:CDS |
| TTGTGACCATACATGATACA+TGG | 0.557384 | 5_2:+73752776 | Msa0787730:three_prime_UTR |
| CACGAGTACTGGAAAATGAT+CGG | 0.571795 | 5_2:+73752317 | Msa0787730:three_prime_UTR |
| AAATATTGTGCATATAGAGT+AGG | 0.577021 | 5_2:-73752399 | None:intergenic |
| ATACGTCGGACAAGAATTTG+AGG | 0.578103 | 5_2:-73751577 | None:intergenic |
| ATGTATGTTCTGCACAGGAA+AGG | 0.591778 | 5_2:+73751272 | Msa0787730:CDS |
| AAAGACAAGCTAAGGTACAT+CGG | 0.593674 | 5_2:-73752058 | None:intergenic |
| AGATTACTTAATGAGTCTTG+GGG | 0.595406 | 5_2:+73751297 | Msa0787730:CDS |
| TTTATTTCAACTCGTACATG+TGG | 0.598013 | 5_2:-73752830 | None:intergenic |
| AGAATCTCTTCAGACAACTC+CGG | 0.598051 | 5_2:-73751142 | None:intergenic |
| GTGCTTAAGTAATCAAGAAG+TGG | 0.598694 | 5_2:-73751184 | None:intergenic |
| GCAGAAGCATGATTAGAGGA+AGG | 0.598929 | 5_2:-73749702 | None:intergenic |
| TCTTCATCATCAGAGTCATA+CGG | 0.598960 | 5_2:-73749831 | None:intergenic |
| CATCAGAGTCATACGGAGAG+AGG | 0.602302 | 5_2:-73749824 | None:intergenic |
| ATACTGTAATGCAGAAGCTG+AGG | 0.609678 | 5_2:-73751688 | None:intergenic |
| ACAAGAAAATAACAGTGCAA+AGG | 0.615006 | 5_2:+73750724 | Msa0787730:CDS |
| TACTGTAATGCAGAAGCTGA+GGG | 0.620289 | 5_2:-73751687 | None:intergenic |
| GGTAAATGAGCTTCACAATG+AGG | 0.633064 | 5_2:+73752015 | Msa0787730:CDS |
| GGTGTGAGATCTCTTAACAA+TGG | 0.634820 | 5_2:+73750659 | Msa0787730:CDS |
| AATTCATCCAAATTTATGAG+AGG | 0.636805 | 5_2:+73751227 | Msa0787730:CDS |
| GAATGTTGAAAGGATTGTAA+GGG | 0.639767 | 5_2:-73749671 | None:intergenic |
| AATCTTGACTAGCCTTACAC+AGG | 0.642412 | 5_2:+73751780 | Msa0787730:CDS |
| ACCACAAATTCTAGAATACA+CGG | 0.657650 | 5_2:+73751357 | Msa0787730:CDS |
| TATAGAGTAGGCACATCACA+TGG | 0.663477 | 5_2:-73752387 | None:intergenic |
| TCCATGAAATGTCAATACGT+CGG | 0.677987 | 5_2:-73751591 | None:intergenic |
| GTTGGAACTAGAGATCCAAG+AGG | 0.745944 | 5_2:-73752148 | None:intergenic |
| GAAACCAAGAACTTATGACG+AGG | 0.752928 | 5_2:-73752097 | None:intergenic |
| ACAAATTCTAGAATACACGG+TGG | 0.791192 | 5_2:+73751360 | Msa0787730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTACTAAAATTAAAAAT+TGG | - | chr5_2:73750030-73750049 | None:intergenic | 10.0% |
| !! | AAAATACTAAAATTTCATCA+TGG | - | chr5_2:73749982-73750001 | None:intergenic | 15.0% |
| !! | ATATATTTGAATTGAAGTAA+TGG | + | chr5_2:73750110-73750129 | Msa0787730:intron | 15.0% |
| !! | TATATTTGAATTGAAGTAAT+GGG | + | chr5_2:73750111-73750130 | Msa0787730:intron | 15.0% |
| !!! | AGTGCATTAATTTTAATTTT+TGG | + | chr5_2:73750244-73750263 | Msa0787730:intron | 15.0% |
| !! | ATAATATAACTACTAATAAG+AGG | - | chr5_2:73750811-73750830 | None:intergenic | 15.0% |
| !! | AGTAGTTATATTATGTTATT+AGG | + | chr5_2:73750817-73750836 | Msa0787730:intron | 15.0% |
| !! | CATTGTAATTATATGTATTT+AGG | + | chr5_2:73751001-73751020 | Msa0787730:intron | 15.0% |
| !!! | TTTTAGTAGAAAATTTGAAG+TGG | + | chr5_2:73750038-73750057 | Msa0787730:intron | 20.0% |
| !!! | TTTAGTAGAAAATTTGAAGT+GGG | + | chr5_2:73750039-73750058 | Msa0787730:intron | 20.0% |
| !!! | CTTGGTAGTTTTAATTTTAA+GGG | + | chr5_2:73750386-73750405 | Msa0787730:intron | 20.0% |
| !!! | TTGGTAGTTTTAATTTTAAG+GGG | + | chr5_2:73750387-73750406 | Msa0787730:intron | 20.0% |
| !! | TAGACACTTTATAATATTGT+AGG | + | chr5_2:73750430-73750449 | Msa0787730:intron | 20.0% |
| !! | TATAATATTGTAGGTGTATT+TGG | + | chr5_2:73750439-73750458 | Msa0787730:intron | 20.0% |
| !! | TCAATTAAATATCTTACTGT+TGG | - | chr5_2:73751508-73751527 | None:intergenic | 20.0% |
| !! | AACAGTAAGATATTTAATTG+AGG | + | chr5_2:73751507-73751526 | Msa0787730:CDS | 20.0% |
| !!! | GAATATACAACTTTTAATGA+AGG | - | chr5_2:73752711-73752730 | None:intergenic | 20.0% |
| ! | GTTTGAATTGGAGAAATAAA+TGG | + | chr5_2:73750192-73750211 | Msa0787730:intron | 25.0% |
| !! | ATGTTTGAAAAAGTTTTGCT+TGG | + | chr5_2:73750368-73750387 | Msa0787730:intron | 25.0% |
| !!! | GCTTGGTAGTTTTAATTTTA+AGG | + | chr5_2:73750385-73750404 | Msa0787730:intron | 25.0% |
| !! | ATAAAGTGTCTATGCTATAT+AGG | - | chr5_2:73750422-73750441 | None:intergenic | 25.0% |
| ! | AATTCATCCAAATTTATGAG+AGG | + | chr5_2:73751227-73751246 | Msa0787730:CDS | 25.0% |
| ! | ATAGATTACTTAATGAGTCT+TGG | + | chr5_2:73751295-73751314 | Msa0787730:CDS | 25.0% |
| ! | TAGATTACTTAATGAGTCTT+GGG | + | chr5_2:73751296-73751315 | Msa0787730:CDS | 25.0% |
| !! | ATATAAGAAGAATCCTTTTG+AGG | + | chr5_2:73751332-73751351 | Msa0787730:CDS | 25.0% |
| ! | AGATATTTAATTGAGGAAGT+TGG | + | chr5_2:73751514-73751533 | Msa0787730:CDS | 25.0% |
| ! | TTCCAAGAATAAATTTCCTA+AGG | + | chr5_2:73751725-73751744 | Msa0787730:CDS | 25.0% |
| ! | TTTACCAAGTACAAATACTT+CGG | - | chr5_2:73752001-73752020 | None:intergenic | 25.0% |
| ! | AAATATTGTGCATATAGAGT+AGG | - | chr5_2:73752402-73752421 | None:intergenic | 25.0% |
| ! | ATTATACAGTTCATCAATGA+AGG | - | chr5_2:73752667-73752686 | None:intergenic | 25.0% |
| GAATGTTGAAAGGATTGTAA+GGG | - | chr5_2:73749674-73749693 | None:intergenic | 30.0% | |
| AGAATGTTGAAAGGATTGTA+AGG | - | chr5_2:73749675-73749694 | None:intergenic | 30.0% | |
| !!! | CGATTGGTTTTGAGAATTTT+GGG | - | chr5_2:73749783-73749802 | None:intergenic | 30.0% |
| !!! | TCGATTGGTTTTGAGAATTT+TGG | - | chr5_2:73749784-73749803 | None:intergenic | 30.0% |
| ! | TGATGATGAAGATGAAGAAA+TGG | + | chr5_2:73749842-73749861 | Msa0787730:CDS | 30.0% |
| TTGTGAAGTTGTGTTTGAAT+TGG | + | chr5_2:73750180-73750199 | Msa0787730:intron | 30.0% | |
| ATTGAACTTGTGTTGTATCT+AGG | + | chr5_2:73750275-73750294 | Msa0787730:intron | 30.0% | |
| TACAGATAGACAACAAGAAA+AGG | + | chr5_2:73750631-73750650 | Msa0787730:intron | 30.0% | |
| TAGACAACAAGAAAAGGAAA+AGG | + | chr5_2:73750637-73750656 | Msa0787730:CDS | 30.0% | |
| AGACAACAAGAAAAGGAAAA+GGG | + | chr5_2:73750638-73750657 | Msa0787730:CDS | 30.0% | |
| !!! | TGCACTGTTATTTTCTTGTA+AGG | - | chr5_2:73750723-73750742 | None:intergenic | 30.0% |
| ACAAGAAAATAACAGTGCAA+AGG | + | chr5_2:73750724-73750743 | Msa0787730:CDS | 30.0% | |
| !! | AACAGTGCAAAGGTATTAAA+TGG | + | chr5_2:73750734-73750753 | Msa0787730:intron | 30.0% |
| ACTAATAAGAGGTCTAACAA+TGG | - | chr5_2:73750800-73750819 | None:intergenic | 30.0% | |
| !!! | TTTTGGGACTGAATATTGAT+TGG | + | chr5_2:73750915-73750934 | Msa0787730:intron | 30.0% |
| ! | TTTGGGACTGAATATTGATT+GGG | + | chr5_2:73750916-73750935 | Msa0787730:intron | 30.0% |
| TTTCAAGAATTTCGAGAGTT+TGG | - | chr5_2:73750947-73750966 | None:intergenic | 30.0% | |
| AAACTCTCGAAATTCTTGAA+AGG | + | chr5_2:73750946-73750965 | Msa0787730:intron | 30.0% | |
| AACTCTCGAAATTCTTGAAA+GGG | + | chr5_2:73750947-73750966 | Msa0787730:intron | 30.0% | |
| ! | AGATTCTTTTGGATGAGAAA+TGG | + | chr5_2:73751158-73751177 | Msa0787730:CDS | 30.0% |
| TTGTGATTCCTTAATTCCAA+AGG | - | chr5_2:73751209-73751228 | None:intergenic | 30.0% | |
| AATTAATGTATGTTCTGCAC+AGG | + | chr5_2:73751267-73751286 | Msa0787730:CDS | 30.0% | |
| AGATTACTTAATGAGTCTTG+GGG | + | chr5_2:73751297-73751316 | Msa0787730:CDS | 30.0% | |
| !! | ACCACAAATTCTAGAATACA+CGG | + | chr5_2:73751357-73751376 | Msa0787730:CDS | 30.0% |
| !! | AGCAATAATTTGCCCTATTT+TGG | - | chr5_2:73751440-73751459 | None:intergenic | 30.0% |
| CTCAACACTGTAAGAAAAAA+GGG | - | chr5_2:73751473-73751492 | None:intergenic | 30.0% | |
| TCTCAACACTGTAAGAAAAA+AGG | - | chr5_2:73751474-73751493 | None:intergenic | 30.0% | |
| GATGTTTCTTAACAAAGAGT+TGG | + | chr5_2:73751624-73751643 | Msa0787730:CDS | 30.0% | |
| CTCCTTAGGAAATTTATTCT+TGG | - | chr5_2:73751730-73751749 | None:intergenic | 30.0% | |
| ! | ATAAATTTCCTAAGGAGCAT+AGG | + | chr5_2:73751733-73751752 | Msa0787730:CDS | 30.0% |
| ATGCAAAAATAACCTGTGTA+AGG | - | chr5_2:73751795-73751814 | None:intergenic | 30.0% | |
| CGTTATAAGGATCAAACAAA+AGG | - | chr5_2:73751903-73751922 | None:intergenic | 30.0% | |
| !! | TTTATCATTGCTGTTTCAGT+TGG | + | chr5_2:73752483-73752502 | Msa0787730:three_prime_UTR | 30.0% |
| TAAACTTAAGAGCCAACTTA+TGG | + | chr5_2:73752622-73752641 | Msa0787730:three_prime_UTR | 30.0% | |
| AAATGAGAGAATCCATAAGT+TGG | - | chr5_2:73752637-73752656 | None:intergenic | 30.0% | |
| AATTGTCCATGTATCATGTA+TGG | - | chr5_2:73752785-73752804 | None:intergenic | 30.0% | |
| ATGTGGTACAAATTGTTTCA+GGG | - | chr5_2:73752816-73752835 | None:intergenic | 30.0% | |
| TTTATTTCAACTCGTACATG+TGG | - | chr5_2:73752833-73752852 | None:intergenic | 30.0% | |
| GGAATTGGAAGAATGTTGAA+AGG | - | chr5_2:73749684-73749703 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAGAATTTTGGGAT+TGG | - | chr5_2:73749778-73749797 | None:intergenic | 35.0% |
| TCTTCATCATCAGAGTCATA+CGG | - | chr5_2:73749834-73749853 | None:intergenic | 35.0% | |
| AACTTGTGTTGTATCTAGGA+CGG | + | chr5_2:73750279-73750298 | Msa0787730:intron | 35.0% | |
| TCTTTGGCATTAAGATCAGT+AGG | - | chr5_2:73750315-73750334 | None:intergenic | 35.0% | |
| TGACTTCAATCTCTTGTCTT+TGG | - | chr5_2:73750331-73750350 | None:intergenic | 35.0% | |
| ! | GATGCTATTCTCTGACTTTT+GGG | - | chr5_2:73750701-73750720 | None:intergenic | 35.0% |
| TTATTGAATGCCCAAAAGTC+AGG | + | chr5_2:73750883-73750902 | Msa0787730:intron | 35.0% | |
| TATTGAATGCCCAAAAGTCA+GGG | + | chr5_2:73750884-73750903 | Msa0787730:intron | 35.0% | |
| ! | ATAAAATGCCCCTGACTTTT+GGG | - | chr5_2:73750896-73750915 | None:intergenic | 35.0% |
| ! | AATAAAATGCCCCTGACTTT+TGG | - | chr5_2:73750897-73750916 | None:intergenic | 35.0% |
| !!! | AAGTCAGGGGCATTTTATTT+TGG | + | chr5_2:73750898-73750917 | Msa0787730:intron | 35.0% |
| !!! | AGTCAGGGGCATTTTATTTT+GGG | + | chr5_2:73750899-73750918 | Msa0787730:intron | 35.0% |
| GTAGTTTCGTAGAAATTCGA+TGG | + | chr5_2:73751108-73751127 | Msa0787730:intron | 35.0% | |
| TTCGATGGAGAAAAGATATC+CGG | + | chr5_2:73751123-73751142 | Msa0787730:CDS | 35.0% | |
| ! | GTTGTCTGAAGAGATTCTTT+TGG | + | chr5_2:73751147-73751166 | Msa0787730:CDS | 35.0% |
| GTGCTTAAGTAATCAAGAAG+TGG | - | chr5_2:73751187-73751206 | None:intergenic | 35.0% | |
| CTTGATTACTTAAGCACCTT+TGG | + | chr5_2:73751190-73751209 | Msa0787730:CDS | 35.0% | |
| !! | CTTAAGCACCTTTGGAATTA+AGG | + | chr5_2:73751198-73751217 | Msa0787730:CDS | 35.0% |
| ACATGTGCCTCTCATAAATT+TGG | - | chr5_2:73751237-73751256 | None:intergenic | 35.0% | |
| !! | ACCGTGTATTCTAGAATTTG+TGG | - | chr5_2:73751361-73751380 | None:intergenic | 35.0% |
| !! | ACAAATTCTAGAATACACGG+TGG | + | chr5_2:73751360-73751379 | Msa0787730:CDS | 35.0% |
| ! | ACTCACGTTGCTTTCTTAAT+GGG | + | chr5_2:73751397-73751416 | Msa0787730:CDS | 35.0% |
| !!! | ATTTGCCCTATTTTGGTACT+AGG | - | chr5_2:73751433-73751452 | None:intergenic | 35.0% |
| ACACTGTAAGAAAAAAGGGA+CGG | - | chr5_2:73751469-73751488 | None:intergenic | 35.0% | |
| TGGCATCAAGGAAAAAGATT+TGG | + | chr5_2:73751534-73751553 | Msa0787730:CDS | 35.0% | |
| GGCATCAAGGAAAAAGATTT+GGG | + | chr5_2:73751535-73751554 | Msa0787730:CDS | 35.0% | |
| TCCATGAAATGTCAATACGT+CGG | - | chr5_2:73751594-73751613 | None:intergenic | 35.0% | |
| ATCTTCACAATGCTCTCTTT+GGG | - | chr5_2:73751655-73751674 | None:intergenic | 35.0% | |
| !! | CTGCATTACAGTATTGATGA+TGG | + | chr5_2:73751697-73751716 | Msa0787730:CDS | 35.0% |
| ! | TTTTCATTCCTATGCTCCTT+AGG | - | chr5_2:73751744-73751763 | None:intergenic | 35.0% |
| GAGCATAGGAATGAAAAATG+CGG | + | chr5_2:73751747-73751766 | Msa0787730:CDS | 35.0% | |
| TTATTCTCCCTTTGCACAAA+AGG | + | chr5_2:73751829-73751848 | Msa0787730:intron | 35.0% | |
| ! | CTTTGTTCCTTTTGTGCAAA+GGG | - | chr5_2:73751839-73751858 | None:intergenic | 35.0% |
| ! | TCTTTGTTCCTTTTGTGCAA+AGG | - | chr5_2:73751840-73751859 | None:intergenic | 35.0% |
| GCACAAAAGGAACAAAGAAA+AGG | + | chr5_2:73751842-73751861 | Msa0787730:intron | 35.0% | |
| TAACTGAGTGTCACGTTATA+AGG | - | chr5_2:73751916-73751935 | None:intergenic | 35.0% | |
| ! | AAAGCCGAAGTATTTGTACT+TGG | + | chr5_2:73751994-73752013 | Msa0787730:CDS | 35.0% |
| AAAGACAAGCTAAGGTACAT+CGG | - | chr5_2:73752061-73752080 | None:intergenic | 35.0% | |
| !!! | TCCTTTTGGAGCTTTCTTTA+GGG | - | chr5_2:73752122-73752141 | None:intergenic | 35.0% |
| TGACAAAAGGATTCATCAGT+TGG | - | chr5_2:73752169-73752188 | None:intergenic | 35.0% | |
| ! | ATGAATCCTTTTGTCAACGA+TGG | + | chr5_2:73752173-73752192 | Msa0787730:CDS | 35.0% |
| ! | TGAATCCTTTTGTCAACGAT+GGG | + | chr5_2:73752174-73752193 | Msa0787730:CDS | 35.0% |
| ! | ATTAATCCCTGTCTTATTGC+AGG | + | chr5_2:73752563-73752582 | Msa0787730:intron | 35.0% |
| GTCACAAGTGTAACAAAAAG+TGG | - | chr5_2:73752763-73752782 | None:intergenic | 35.0% | |
| TTGTGACCATACATGATACA+TGG | + | chr5_2:73752776-73752795 | Msa0787730:three_prime_UTR | 35.0% | |
| CATGTGGTACAAATTGTTTC+AGG | - | chr5_2:73752817-73752836 | None:intergenic | 35.0% | |
| GCATGATTAGAGGAAGGAAT+TGG | - | chr5_2:73749699-73749718 | None:intergenic | 40.0% | |
| ! | AGAAGCAGAAGCATGATTAG+AGG | - | chr5_2:73749709-73749728 | None:intergenic | 40.0% |
| ACCAATCGAAAATCACCCTA+TGG | + | chr5_2:73749795-73749814 | Msa0787730:CDS | 40.0% | |
| ! | TCCATAGGGTGATTTTCGAT+TGG | - | chr5_2:73749799-73749818 | None:intergenic | 40.0% |
| ! | GGAGAGAGGAATTTTCCATA+GGG | - | chr5_2:73749813-73749832 | None:intergenic | 40.0% |
| TTGAAGTCAAAGACAGTTGC+AGG | + | chr5_2:73750342-73750361 | Msa0787730:CDS | 40.0% | |
| TGTCAGACACTAACACGTTA+TGG | - | chr5_2:73750468-73750487 | None:intergenic | 40.0% | |
| TTGAATGTAACCACACGAGT+CGG | - | chr5_2:73750496-73750515 | None:intergenic | 40.0% | |
| ACTAACTCACACACTGACAA+TGG | - | chr5_2:73750569-73750588 | None:intergenic | 40.0% | |
| GGTGTGAGATCTCTTAACAA+TGG | + | chr5_2:73750659-73750678 | Msa0787730:CDS | 40.0% | |
| ! | GGATGCTATTCTCTGACTTT+TGG | - | chr5_2:73750702-73750721 | None:intergenic | 40.0% |
| GCTGCAGTTATTGTGTGATT+AGG | + | chr5_2:73750839-73750858 | Msa0787730:intron | 40.0% | |
| TTATTGTGTGATTAGGCAGC+AGG | + | chr5_2:73750846-73750865 | Msa0787730:intron | 40.0% | |
| ATTGAATGCCCAAAAGTCAG+GGG | + | chr5_2:73750885-73750904 | Msa0787730:intron | 40.0% | |
| !!! | ACCCACAACTCGAGTTTTTT+GGG | + | chr5_2:73750974-73750993 | Msa0787730:intron | 40.0% |
| AGCACCACAGGTACATTAAT+TGG | - | chr5_2:73751053-73751072 | None:intergenic | 40.0% | |
| ! | TTAATGTACCTGTGGTGCTA+TGG | + | chr5_2:73751054-73751073 | Msa0787730:intron | 40.0% |
| ATAAGATTCCATAGCACCAC+AGG | - | chr5_2:73751065-73751084 | None:intergenic | 40.0% | |
| AGAATCTCTTCAGACAACTC+CGG | - | chr5_2:73751145-73751164 | None:intergenic | 40.0% | |
| ATGTATGTTCTGCACAGGAA+AGG | + | chr5_2:73751272-73751291 | Msa0787730:CDS | 40.0% | |
| GAATTTGTGGTTGCCTCAAA+AGG | - | chr5_2:73751348-73751367 | None:intergenic | 40.0% | |
| ! | GACTCACGTTGCTTTCTTAA+TGG | + | chr5_2:73751396-73751415 | Msa0787730:CDS | 40.0% |
| !! | GTTGCTTTCTTAATGGGCTT+GGG | + | chr5_2:73751403-73751422 | Msa0787730:CDS | 40.0% |
| GCGTACCTAGTACCAAAATA+GGG | + | chr5_2:73751425-73751444 | Msa0787730:CDS | 40.0% | |
| AATTGAGGAAGTTGGCATCA+AGG | + | chr5_2:73751522-73751541 | Msa0787730:CDS | 40.0% | |
| ATACGTCGGACAAGAATTTG+AGG | - | chr5_2:73751580-73751599 | None:intergenic | 40.0% | |
| ! | TCCGACGTATTGACATTTCA+TGG | + | chr5_2:73751590-73751609 | Msa0787730:CDS | 40.0% |
| CATCTTCACAATGCTCTCTT+TGG | - | chr5_2:73751656-73751675 | None:intergenic | 40.0% | |
| !! | CAAAGAGAGCATTGTGAAGA+TGG | + | chr5_2:73751654-73751673 | Msa0787730:CDS | 40.0% |
| TACTGTAATGCAGAAGCTGA+GGG | - | chr5_2:73751690-73751709 | None:intergenic | 40.0% | |
| ATACTGTAATGCAGAAGCTG+AGG | - | chr5_2:73751691-73751710 | None:intergenic | 40.0% | |
| !! | AATCTTGACTAGCCTTACAC+AGG | + | chr5_2:73751780-73751799 | Msa0787730:CDS | 40.0% |
| GGTAAATGAGCTTCACAATG+AGG | + | chr5_2:73752015-73752034 | Msa0787730:CDS | 40.0% | |
| AAGACAAGCTAAGGTACATC+GGG | - | chr5_2:73752060-73752079 | None:intergenic | 40.0% | |
| !! | GATGTACCTTAGCTTGTCTT+TGG | + | chr5_2:73752060-73752079 | Msa0787730:CDS | 40.0% |
| GAAACCAAGAACTTATGACG+AGG | - | chr5_2:73752100-73752119 | None:intergenic | 40.0% | |
| TCCCTAAAGAAAGCTCCAAA+AGG | + | chr5_2:73752118-73752137 | Msa0787730:CDS | 40.0% | |
| !!! | GTCCTTTTGGAGCTTTCTTT+AGG | - | chr5_2:73752123-73752142 | None:intergenic | 40.0% |
| ACTAGAGATCCAAGAGGAAA+TGG | - | chr5_2:73752145-73752164 | None:intergenic | 40.0% | |
| !! | CACGAGTACTGGAAAATGAT+CGG | + | chr5_2:73752317-73752336 | Msa0787730:three_prime_UTR | 40.0% |
| TATAGAGTAGGCACATCACA+TGG | - | chr5_2:73752390-73752409 | None:intergenic | 40.0% | |
| ACTAAACAAGCTCACCTTTC+AGG | - | chr5_2:73752509-73752528 | None:intergenic | 40.0% | |
| ! | GCAGAAGCATGATTAGAGGA+AGG | - | chr5_2:73749705-73749724 | None:intergenic | 45.0% |
| ! | CGGAGAGAGGAATTTTCCAT+AGG | - | chr5_2:73749814-73749833 | None:intergenic | 45.0% |
| !!! | GACCCACAACTCGAGTTTTT+TGG | + | chr5_2:73750973-73750992 | Msa0787730:intron | 45.0% |
| ! | CCCCAAAAAACTCGAGTTGT+GGG | - | chr5_2:73750978-73750997 | None:intergenic | 45.0% |
| !!! | CCCACAACTCGAGTTTTTTG+GGG | + | chr5_2:73750975-73750994 | Msa0787730:intron | 45.0% |
| ! | TCCCCAAAAAACTCGAGTTG+TGG | - | chr5_2:73750979-73750998 | None:intergenic | 45.0% |
| GCAGCCAATTAATGTACCTG+TGG | + | chr5_2:73751046-73751065 | Msa0787730:intron | 45.0% | |
| !! | CGTTGCTTTCTTAATGGGCT+TGG | + | chr5_2:73751402-73751421 | Msa0787730:CDS | 45.0% |
| GGCGTACCTAGTACCAAAAT+AGG | + | chr5_2:73751424-73751443 | Msa0787730:CDS | 45.0% | |
| ! | TTATTGACTACTGTGCCTGC+AGG | + | chr5_2:73751943-73751962 | Msa0787730:intron | 45.0% |
| !! | CGGCTTTAGATTAGCTTCCA+AGG | - | chr5_2:73751981-73752000 | None:intergenic | 45.0% |
| GTACATCGGGTATTTGGTCA+AGG | - | chr5_2:73752047-73752066 | None:intergenic | 45.0% | |
| GCTAAGGTACATCGGGTATT+TGG | - | chr5_2:73752053-73752072 | None:intergenic | 45.0% | |
| TCTGGTCCAAAGACAAGCTA+AGG | - | chr5_2:73752069-73752088 | None:intergenic | 45.0% | |
| TATGACGAGGACGAATTCTC+TGG | - | chr5_2:73752087-73752106 | None:intergenic | 45.0% | |
| TCGTCCTCGTCATAAGTTCT+TGG | + | chr5_2:73752093-73752112 | Msa0787730:CDS | 45.0% | |
| ! | CCAAGAGGAAATGGTCCTTT+TGG | - | chr5_2:73752136-73752155 | None:intergenic | 45.0% |
| CCAAAAGGACCATTTCCTCT+TGG | + | chr5_2:73752133-73752152 | Msa0787730:CDS | 45.0% | |
| GTTGGAACTAGAGATCCAAG+AGG | - | chr5_2:73752151-73752170 | None:intergenic | 45.0% | |
| CAATCAACTTGCACGAGTAC+TGG | + | chr5_2:73752306-73752325 | Msa0787730:three_prime_UTR | 45.0% | |
| CCACAACCTGCAATAAGACA+GGG | - | chr5_2:73752572-73752591 | None:intergenic | 45.0% | |
| ACCACAACCTGCAATAAGAC+AGG | - | chr5_2:73752573-73752592 | None:intergenic | 45.0% | |
| CATCAGAGTCATACGGAGAG+AGG | - | chr5_2:73749827-73749846 | None:intergenic | 50.0% | |
| ! | TCCTTTTGTCAACGATGGGC+TGG | + | chr5_2:73752178-73752197 | Msa0787730:CDS | 50.0% |
| TCCAGCCCATCGTTGACAAA+AGG | - | chr5_2:73752182-73752201 | None:intergenic | 50.0% | |
| ! | GCTGTTTCAGTTGGCCTGAA+AGG | + | chr5_2:73752492-73752511 | Msa0787730:three_prime_UTR | 50.0% |
| ! | CCCTGTCTTATTGCAGGTTG+TGG | + | chr5_2:73752569-73752588 | Msa0787730:intron | 50.0% |
| !! | TGACACAACACCGACTCGTG+TGG | + | chr5_2:73750483-73750502 | Msa0787730:intron | 55.0% |
| AGGACAGAGATAGCACCTGC+AGG | - | chr5_2:73751961-73751980 | None:intergenic | 55.0% | |
| ! | GCAGGTGCTATCTCTGTCCT+TGG | + | chr5_2:73751961-73751980 | Msa0787730:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 73749645 | 73752861 | 73749645 | ID=Msa0787730;Name=Msa0787730 |
| chr5_2 | mRNA | 73749645 | 73752861 | 73749645 | ID=Msa0787730-mRNA-1;Parent=Msa0787730;Name=Msa0787730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.83|1|0.8|0.66|6|508|498 |
| chr5_2 | exon | 73749645 | 73749956 | 73749645 | ID=Msa0787730-mRNA-1:exon:22458;Parent=Msa0787730-mRNA-1 |
| chr5_2 | exon | 73750297 | 73750363 | 73750297 | ID=Msa0787730-mRNA-1:exon:22459;Parent=Msa0787730-mRNA-1 |
| chr5_2 | exon | 73750636 | 73750745 | 73750636 | ID=Msa0787730-mRNA-1:exon:22460;Parent=Msa0787730-mRNA-1 |
| chr5_2 | exon | 73751112 | 73751801 | 73751112 | ID=Msa0787730-mRNA-1:exon:22461;Parent=Msa0787730-mRNA-1 |
| chr5_2 | exon | 73751965 | 73752513 | 73751965 | ID=Msa0787730-mRNA-1:exon:22462;Parent=Msa0787730-mRNA-1 |
| chr5_2 | exon | 73752585 | 73752861 | 73752585 | ID=Msa0787730-mRNA-1:exon:22463;Parent=Msa0787730-mRNA-1 |
| chr5_2 | CDS | 73749645 | 73749956 | 73749645 | ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1 |
| chr5_2 | CDS | 73750297 | 73750363 | 73750297 | ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1 |
| chr5_2 | CDS | 73750636 | 73750745 | 73750636 | ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1 |
| chr5_2 | CDS | 73751112 | 73751801 | 73751112 | ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1 |
| chr5_2 | CDS | 73751965 | 73752282 | 73751965 | ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1 |
| chr5_2 | three_prime_UTR | 73752283 | 73752513 | 73752283 | ID=Msa0787730-mRNA-1:three_prime_utr;Parent=Msa0787730-mRNA-1 |
| chr5_2 | three_prime_UTR | 73752585 | 73752861 | 73752585 | ID=Msa0787730-mRNA-1:three_prime_utr;Parent=Msa0787730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
