AlfalfaGEDB | Msa0787730

M. sativa cultivar zhongmu-4 / Msa0787730

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048367 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0099402 GO:1901360 GO:1901363
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787730	sp\|Q9FM80\|MTEF9_ARATH	63.291	474	145	3	33	497	42	495	0.0	571

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787730	G7K4F3	96.436	505	9	3	1	498	1	503	0.0	977

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TFs/TRs:

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Gene ID	Type	Classification
Msa0787730	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0787730	-0.800332	1.514384e-48	-8.615850e-47
Msa0006700	Msa0787730	0.801337	9.444947e-49	-8.615850e-47
Msa0008850	Msa0787730	0.816548	5.226284e-52	-8.615850e-47
Msa0020630	Msa0787730	0.811119	8.211599e-51	-8.615850e-47
Msa0027540	Msa0787730	0.801909	7.209116e-49	-8.615850e-47
Msa0029620	Msa0787730	0.815382	9.515722e-52	-8.615850e-47
Msa0032610	Msa0787730	0.800099	1.689299e-48	-8.615850e-47
Msa0044710	Msa0787730	0.814812	1.273240e-51	-8.615850e-47
Msa0050720	Msa0787730	0.808878	2.493861e-50	-8.615850e-47
Msa0055280	Msa0787730	0.814643	1.387586e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787730	MtrunA17_Chr5g0445491	96.436	505	9	3	1	498	1	503	0.0	977
Msa0787730	MtrunA17_Chr2g0294671	32.000	225	144	6	225	446	215	433	4.35e-26	111
Msa0787730	MtrunA17_Chr2g0294671	30.256	195	125	5	254	444	208	395	2.31e-17	84.7
Msa0787730	MtrunA17_Chr2g0294671	27.706	231	137	7	174	398	272	478	4.86e-17	83.6
Msa0787730	MtrunA17_Chr2g0311181	26.639	244	161	6	222	464	70	296	5.32e-25	105
Msa0787730	MtrunA17_Chr5g0428941	24.924	329	202	7	186	476	171	492	5.65e-25	108
Msa0787730	MtrunA17_Chr5g0428941	25.263	190	136	3	216	405	134	317	2.83e-11	65.9
Msa0787730	MtrunA17_Chr4g0043941	28.571	266	176	6	183	443	42	298	5.04e-24	102
Msa0787730	MtrunA17_Chr4g0043941	28.194	227	159	2	221	444	41	266	5.44e-19	88.2
Msa0787730	MtrunA17_Chr5g0417641	29.319	191	132	1	256	446	88	275	7.03e-21	93.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0787730	AT5G55580.1	63.291	474	145	3	33	497	42	495	0.0	571
Msa0787730	AT5G55580.2	73.669	357	90	1	141	497	37	389	0.0	551
Msa0787730	AT5G55580.3	58.981	373	124	3	33	396	42	394	2.99e-138	404
Msa0787730	AT2G21710.1	26.148	283	199	5	190	469	320	595	1.78e-26	113
Msa0787730	AT2G21710.1	23.256	387	271	11	101	476	127	498	1.97e-13	73.2
Msa0787730	AT4G02990.2	25.373	335	201	9	182	476	175	500	6.10e-24	105
Msa0787730	AT4G02990.1	25.373	335	201	9	182	476	175	500	6.10e-24	105
Msa0787730	AT4G38160.4	27.068	266	180	6	184	443	43	300	5.68e-23	100
Msa0787730	AT4G38160.4	29.741	232	155	6	221	446	41	270	8.14e-21	94.0
Msa0787730	AT4G38160.1	27.068	266	180	6	184	443	43	300	5.68e-23	100

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Find 99 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAAGCTAAGGTACAT+CGG	0.593674	5_2:-73752058	None:intergenic
AAAGCCGAAGTATTTGTACT+TGG	0.508230	5_2:+73751994	Msa0787730:CDS
AAATATTGTGCATATAGAGT+AGG	0.577021	5_2:-73752399	None:intergenic
AAATGAGAGAATCCATAAGT+TGG	0.528482	5_2:-73752634	None:intergenic
AACAGTAAGATATTTAATTG+AGG	0.516231	5_2:+73751507	Msa0787730:CDS
AAGACAAGCTAAGGTACATC+GGG	0.535136	5_2:-73752057	None:intergenic
AATCTTGACTAGCCTTACAC+AGG	0.642412	5_2:+73751780	Msa0787730:CDS
AATTAATGTATGTTCTGCAC+AGG	0.499032	5_2:+73751267	Msa0787730:CDS
AATTCATCCAAATTTATGAG+AGG	0.636805	5_2:+73751227	Msa0787730:CDS
AATTGAGGAAGTTGGCATCA+AGG	0.486070	5_2:+73751522	Msa0787730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGTTGAAAGGATTGTAA+GGG	-	chr5_2:73749674-73749693	None:intergenic	30.0%
AGAATGTTGAAAGGATTGTA+AGG	-	chr5_2:73749675-73749694	None:intergenic	30.0%
TTGTGAAGTTGTGTTTGAAT+TGG	+	chr5_2:73750180-73750199	Msa0787730:intron	30.0%
ATTGAACTTGTGTTGTATCT+AGG	+	chr5_2:73750275-73750294	Msa0787730:intron	30.0%
TACAGATAGACAACAAGAAA+AGG	+	chr5_2:73750631-73750650	Msa0787730:intron	30.0%
TAGACAACAAGAAAAGGAAA+AGG	+	chr5_2:73750637-73750656	Msa0787730:CDS	30.0%
AGACAACAAGAAAAGGAAAA+GGG	+	chr5_2:73750638-73750657	Msa0787730:CDS	30.0%
ACAAGAAAATAACAGTGCAA+AGG	+	chr5_2:73750724-73750743	Msa0787730:CDS	30.0%
ACTAATAAGAGGTCTAACAA+TGG	-	chr5_2:73750800-73750819	None:intergenic	30.0%
TTTCAAGAATTTCGAGAGTT+TGG	-	chr5_2:73750947-73750966	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	73749645	73752861	73749645	ID=Msa0787730;Name=Msa0787730
chr5_2	mRNA	73749645	73752861	73749645	ID=Msa0787730-mRNA-1;Parent=Msa0787730;Name=Msa0787730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.83\|1\|0.8\|0.66\|6\|508\|498
chr5_2	exon	73749645	73749956	73749645	ID=Msa0787730-mRNA-1:exon:22458;Parent=Msa0787730-mRNA-1
chr5_2	exon	73750297	73750363	73750297	ID=Msa0787730-mRNA-1:exon:22459;Parent=Msa0787730-mRNA-1
chr5_2	exon	73750636	73750745	73750636	ID=Msa0787730-mRNA-1:exon:22460;Parent=Msa0787730-mRNA-1
chr5_2	exon	73751112	73751801	73751112	ID=Msa0787730-mRNA-1:exon:22461;Parent=Msa0787730-mRNA-1
chr5_2	exon	73751965	73752513	73751965	ID=Msa0787730-mRNA-1:exon:22462;Parent=Msa0787730-mRNA-1
chr5_2	exon	73752585	73752861	73752585	ID=Msa0787730-mRNA-1:exon:22463;Parent=Msa0787730-mRNA-1
chr5_2	CDS	73749645	73749956	73749645	ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1
chr5_2	CDS	73750297	73750363	73750297	ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1
chr5_2	CDS	73750636	73750745	73750636	ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1
chr5_2	CDS	73751112	73751801	73751112	ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1
chr5_2	CDS	73751965	73752282	73751965	ID=Msa0787730-mRNA-1:cds;Parent=Msa0787730-mRNA-1
chr5_2	three_prime_UTR	73752283	73752513	73752283	ID=Msa0787730-mRNA-1:three_prime_utr;Parent=Msa0787730-mRNA-1
chr5_2	three_prime_UTR	73752585	73752861	73752585	ID=Msa0787730-mRNA-1:three_prime_utr;Parent=Msa0787730-mRNA-1

Gene Sequence

>Msa0787730

ATGGCTACTACATTTTTATCACTTTACCCTTACAATCCTTTCAACATTCTTCCAATTCCTTCCTCTAATCATGCTTCTGCTTCTTCTTCATTTCTCAAACGAAGAAAATTCACTGTTCTTTCTGCTCATTCCAATCCCAAAATTCTCAAAACCAATCGAAAATCACCCTATGGAAAATTCCTCTCTCCGTATGACTCTGATGATGAAGATGAAGAAATGGACTTTGAAGACGATGAAGATGAAGATGAAGATGATGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACGGATTTGCTGAGCCTACTGATCTTAATGCCAAAGACAAGAGATTGAAGTCAAAGACAGTTGCAGATAGACAACAAGAAAAGGAAAAGGGTGTGAGATCTCTTAACAATGGACAGAGCAAAAGATTGCCCAAAAGTCAGAGAATAGCATCCTTACAAGAAAATAACAGTGCAAAGTTTCGTAGAAATTCGATGGAGAAAAGATATCCGGAGTTGTCTGAAGAGATTCTTTTGGATGAGAAATGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATTAAGGAATCACAATTCATCCAAATTTATGAGAGGCACATGTCGTCATTTCAAATTAATGTATGTTCTGCACAGGAAAGGATAGATTACTTAATGAGTCTTGGGGTTAAACATAAAGATATAAGAAGAATCCTTTTGAGGCAACCACAAATTCTAGAATACACGGTGGAGAACAATTTGAAGACTCACGTTGCTTTCTTAATGGGCTTGGGCGTACCTAGTACCAAAATAGGGCAAATTATTGCTTCTACTCCGTCCCTTTTTTCTTACAGTGTTGAGAAATCGTTAAAACCAACAGTAAGATATTTAATTGAGGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAAGTCATTCAACTGAGTCCTCAAATTCTTGTCCGACGTATTGACATTTCATGGAATACTCGATTGATGTTTCTTAACAAAGAGTTGGATGCACCCAAAGAGAGCATTGTGAAGATGGTGACGAAACACCCTCAGCTTCTGCATTACAGTATTGATGATGGATTGCTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATGCGGACATCTTGAAAATCTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAAGCTAATCTAAAGCCGAAGTATTTGTACTTGGTAAATGAGCTTCACAATGAGGTGCAAACCTTGACCAAATACCCGATGTACCTTAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGTCATAAGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCTCTTGGATCTCTAGTTCCAACTGATGAATCCTTTTGTCAACGATGGGCTGGAACTACTCTTGATGAATATGCTGCATTTCGACAGAGATTATTGCTCAAAAAACTTGCTGAGAAATATGACAGAAAAATGTGA

Protein sequence

>Msa0787730

MATTFLSLYPYNPFNILPIPSSNHASASSSFLKRRKFTVLSAHSNPKILKTNRKSPYGKFLSPYDSDDEDEEMDFEDDEDEDEDDEDDDDDDDDDDDDDDDDDDDGFAEPTDLNAKDKRLKSKTVADRQQEKEKGVRSLNNGQSKRLPKSQRIASLQENNSAKFRRNSMEKRYPELSEEILLDEKWLPLLDYLSTFGIKESQFIQIYERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEYTVENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVRRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNADILKILTSLTQVLSLSLEANLKPKYLYLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESFCQRWAGTTLDEYAAFRQRLLLKKLAEKYDRKM*