AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0325830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325830 MtrunA17_Chr2g0304231 71.818 220 26 3 2 196 109 317 5.28e-103 302
Msa0325830 MtrunA17_Chr2g0310111 57.282 206 57 2 11 191 113 312 1.20e-69 217
Msa0325830 MtrunA17_Chr8g0356981 56.796 206 64 1 11 191 100 305 1.48e-65 206
Msa0325830 MtrunA17_Chr7g0253651 52.910 189 62 2 35 196 129 317 1.14e-59 191
Msa0325830 MtrunA17_Chr2g0331311 51.759 199 68 3 25 195 116 314 1.23e-58 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0325830 AT5G46150.3 64.246 179 39 1 35 188 129 307 4.36e-74 228
Msa0325830 AT5G46150.1 64.246 179 39 1 35 188 129 307 7.92e-74 228
Msa0325830 AT5G46150.2 64.246 179 39 1 35 188 129 307 7.92e-74 228
Msa0325830 AT1G54320.1 60.440 182 47 1 35 191 132 313 4.19e-66 208
Msa0325830 AT3G12740.1 60.440 182 47 1 35 191 133 314 2.56e-65 206
Msa0325830 AT1G79450.2 56.989 186 55 1 35 195 65 250 8.76e-62 195
Msa0325830 AT1G79450.1 56.989 186 55 1 35 195 132 317 3.27e-61 196
Msa0325830 AT1G16360.2 53.769 199 67 1 22 195 119 317 5.03e-61 195
Msa0325830 AT1G16360.1 53.769 199 67 1 22 195 105 303 8.00e-61 194
Msa0325830 AT1G16360.4 56.452 186 56 1 35 195 118 303 8.22e-61 194
Msa0325830 AT5G46150.4 56.190 105 21 1 35 114 129 233 2.06e-30 113
Msa0325830 AT1G16360.3 38.679 106 40 1 35 115 118 223 3.83e-14 69.7
Msa0325830 AT1G16360.5 38.679 106 40 1 35 115 118 223 3.83e-14 69.7

Find 46 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGTATTTAACTGTAAA+TGG 0.178487 2_4:-33942536 Msa0325830:three_prime_UTR
ACATCTGAGTTTAATTATAA+TGG 0.249371 2_4:-33942500 Msa0325830:three_prime_UTR
AAAAGCATTTCTAGCTAATA+AGG 0.268840 2_4:-33942696 Msa0325830:CDS
AGTGACCGCGATCACAAATT+TGG 0.274721 2_4:-33944397 Msa0325830:CDS
AACTATAACACTTACAGTTT+TGG 0.277294 2_4:-33943479 Msa0325830:CDS
CATCAGAATTGAAGGTTAAT+AGG 0.289748 2_4:-33944438 Msa0325830:intron
AAAATATTCACAATTTGTTT+AGG 0.304539 2_4:-33944621 Msa0325830:CDS
TGAATGAGCAAGAGAAATAA+AGG 0.322039 2_4:+33944643 None:intergenic
CGATCACAAATTTGGAAAAC+AGG 0.350003 2_4:-33944389 Msa0325830:CDS
CGGTAAAATAGAAGAGGATT+TGG 0.362798 2_4:-33943537 Msa0325830:CDS
ATCAAGAAGATCTCATAGTT+TGG 0.368552 2_4:-33943598 Msa0325830:CDS
TTTCAAAATGGTACCTTGAC+TGG 0.399882 2_4:-33944352 Msa0325830:CDS
GGAATTGCTAATTTATTTGT+CGG 0.411974 2_4:-33943395 Msa0325830:CDS
TGGAAACAAGCATATGAGTA+TGG 0.419405 2_4:-33942480 Msa0325830:three_prime_UTR
TCTATCAACATCTAGCTGGC+TGG 0.427638 2_4:-33943438 Msa0325830:CDS
AAAGATGAGAAATTATGAAA+GGG 0.437871 2_4:-33942453 Msa0325830:three_prime_UTR
CTATCAACATCTAGCTGGCT+GGG 0.463891 2_4:-33943437 Msa0325830:CDS
GAGTAGACCGTGTCCCCATA+AGG 0.498211 2_4:+33942732 None:intergenic
CAGCAGCTCGTACATGGACT+CGG 0.499399 2_4:-33944577 Msa0325830:CDS
AGTGATCAGCAGCTCGTACA+TGG 0.501244 2_4:-33944583 Msa0325830:CDS
CTCTAAAGGTCTACAAGGAC+TGG 0.508713 2_4:+33944543 None:intergenic
TGTATTTGATAGTCGGTACA+TGG 0.524754 2_4:-33942611 Msa0325830:exon
TAAAGATGAGAAATTATGAA+AGG 0.528360 2_4:-33942454 Msa0325830:three_prime_UTR
ACCGTACAACTTTCGGAAGG+TGG 0.529549 2_4:+33943556 None:intergenic
CCCACCTTCCGAAAGTTGTA+CGG 0.540007 2_4:-33943557 Msa0325830:CDS
TCGGTACTTACTGGAATACT+AGG 0.551282 2_4:+33944313 None:intergenic
TTGTTCTATCAACATCTAGC+TGG 0.552699 2_4:-33943442 Msa0325830:CDS
ATGAAGTTGAAATTAAATCC+AGG 0.556980 2_4:+33944667 None:intergenic
CAGCTTTGCACCTCCAGTCA+AGG 0.557989 2_4:+33944339 None:intergenic
CAAATAAATTAGCAATTCCA+AGG 0.570864 2_4:+33943399 None:intergenic
AAGATGAGAAATTATGAAAG+GGG 0.572019 2_4:-33942452 None:intergenic
TTAATAGGAAAGGCATTGCA+TGG 0.573955 2_4:-33944423 Msa0325830:CDS
AGATCATTAGAAGACTCTAA+AGG 0.574000 2_4:+33944529 None:intergenic
ATTAAACTCAGATGTTTACT+CGG 0.574807 2_4:+33942508 None:intergenic
AAGCTGTTGTATTTGATAGT+CGG 0.577720 2_4:-33942618 Msa0325830:exon
GAATTGAAGGTTAATAGGAA+AGG 0.587031 2_4:-33944433 Msa0325830:intron
CCGTACAACTTTCGGAAGGT+GGG 0.587134 2_4:+33943557 None:intergenic
GTTGTACGGTAAAATAGAAG+AGG 0.588169 2_4:-33943543 Msa0325830:CDS
CAAAATGGTACCTTGACTGG+AGG 0.588617 2_4:-33944349 Msa0325830:CDS
AAGATCTCATAGTTTGGATG+CGG 0.596529 2_4:-33943592 Msa0325830:CDS
GGGACACGGTCTACTCAACA+TGG 0.623879 2_4:-33942725 Msa0325830:CDS
GAAGACTCTAAAGGTCTACA+AGG 0.624493 2_4:+33944538 None:intergenic
TTTACCGTACAACTTTCGGA+AGG 0.635260 2_4:+33943553 None:intergenic
ATGCAGACCTTATGGGGACA+CGG 0.649450 2_4:-33942739 Msa0325830:intron
TCAACATCTAGCTGGCTGGG+TGG 0.687856 2_4:-33943434 Msa0325830:CDS
TTTCTAGCTAATAAGGTACG+TGG 0.723570 2_4:-33942689 Msa0325830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTCACAATTTGTTT+AGG - chr2_4:33942547-33942566 Msa0325830:three_prime_UTR 15.0%
!!! TACCATTTTGAAAATTAAAT+GGG + chr2_4:33942809-33942828 None:intergenic 15.0%
!!! GTAATCATTTTTAAACTATT+GGG + chr2_4:33943019-33943038 None:intergenic 15.0%
!!! TGTAATCATTTTTAAACTAT+TGG + chr2_4:33943020-33943039 None:intergenic 15.0%
!!! ATTACAAAATACAAAGTATT+GGG + chr2_4:33943071-33943090 None:intergenic 15.0%
!! TATTACAAAATACAAAGTAT+TGG + chr2_4:33943072-33943091 None:intergenic 15.0%
!!! TTCCTTTATTTTTTTTCTTT+TGG - chr2_4:33943372-33943391 Msa0325830:intron 15.0%
!! AACCAAAAGAAAAAAAATAA+AGG + chr2_4:33943377-33943396 None:intergenic 15.0%
!! AAAAAGCAAATATTCAATTA+TGG + chr2_4:33943871-33943890 None:intergenic 15.0%
!!! TATTAAGAACTTTTATTTTG+AGG - chr2_4:33944020-33944039 Msa0325830:intron 15.0%
!!! AAAATATTCACAATTTGTTT+AGG - chr2_4:33942547-33942566 Msa0325830:three_prime_UTR 15.0%
!!! TACCATTTTGAAAATTAAAT+GGG + chr2_4:33942809-33942828 None:intergenic 15.0%
!!! GTAATCATTTTTAAACTATT+GGG + chr2_4:33943019-33943038 None:intergenic 15.0%
!!! TGTAATCATTTTTAAACTAT+TGG + chr2_4:33943020-33943039 None:intergenic 15.0%
!!! ATTACAAAATACAAAGTATT+GGG + chr2_4:33943071-33943090 None:intergenic 15.0%
!! TATTACAAAATACAAAGTAT+TGG + chr2_4:33943072-33943091 None:intergenic 15.0%
!!! TTCCTTTATTTTTTTTCTTT+TGG - chr2_4:33943372-33943391 Msa0325830:intron 15.0%
!! AACCAAAAGAAAAAAAATAA+AGG + chr2_4:33943377-33943396 None:intergenic 15.0%
!! AAAAAGCAAATATTCAATTA+TGG + chr2_4:33943871-33943890 None:intergenic 15.0%
!!! TATTAAGAACTTTTATTTTG+AGG - chr2_4:33944020-33944039 Msa0325830:intron 15.0%
!!! TACCCATTTAATTTTCAAAA+TGG - chr2_4:33942804-33942823 Msa0325830:intron 20.0%
!!! GTACCATTTTGAAAATTAAA+TGG + chr2_4:33942810-33942829 None:intergenic 20.0%
!!! ATTGTTATTGTTATGAATGT+TGG - chr2_4:33943039-33943058 Msa0325830:intron 20.0%
!!! TTTTTTAGTGAAACTTCTAT+TGG - chr2_4:33943126-33943145 Msa0325830:intron 20.0%
!! ATACAGAAATGAAAATGTTA+AGG + chr2_4:33943260-33943279 None:intergenic 20.0%
!!! ATTACTTGAGTTTTTAATGT+CGG - chr2_4:33943278-33943297 Msa0325830:intron 20.0%
!!! ATTTGATTTATAGTCGATAA+TGG - chr2_4:33944150-33944169 Msa0325830:intron 20.0%
!! TTCTATGCAAATAATATCAT+AGG + chr2_4:33944314-33944333 None:intergenic 20.0%
!! CTATTGTATTTAACTGTAAA+TGG - chr2_4:33944632-33944651 Msa0325830:CDS 20.0%
!! ACATCTGAGTTTAATTATAA+TGG - chr2_4:33944668-33944687 Msa0325830:CDS 20.0%
!! TAAAGATGAGAAATTATGAA+AGG - chr2_4:33944714-33944733 Msa0325830:CDS 20.0%
!! AAAGATGAGAAATTATGAAA+GGG - chr2_4:33944715-33944734 Msa0325830:CDS 20.0%
!!! TACCCATTTAATTTTCAAAA+TGG - chr2_4:33942804-33942823 Msa0325830:intron 20.0%
!!! GTACCATTTTGAAAATTAAA+TGG + chr2_4:33942810-33942829 None:intergenic 20.0%
!!! ATTGTTATTGTTATGAATGT+TGG - chr2_4:33943039-33943058 Msa0325830:intron 20.0%
!!! TTTTTTAGTGAAACTTCTAT+TGG - chr2_4:33943126-33943145 Msa0325830:intron 20.0%
!! ATACAGAAATGAAAATGTTA+AGG + chr2_4:33943260-33943279 None:intergenic 20.0%
!!! ATTACTTGAGTTTTTAATGT+CGG - chr2_4:33943278-33943297 Msa0325830:intron 20.0%
!!! ATTTGATTTATAGTCGATAA+TGG - chr2_4:33944150-33944169 Msa0325830:intron 20.0%
!! TTCTATGCAAATAATATCAT+AGG + chr2_4:33944314-33944333 None:intergenic 20.0%
!! CTATTGTATTTAACTGTAAA+TGG - chr2_4:33944632-33944651 Msa0325830:CDS 20.0%
!! ACATCTGAGTTTAATTATAA+TGG - chr2_4:33944668-33944687 Msa0325830:CDS 20.0%
!! TAAAGATGAGAAATTATGAA+AGG - chr2_4:33944714-33944733 Msa0325830:CDS 20.0%
!!! ATATTTTTGGTGGAAAAGAA+TGG + chr2_4:33942474-33942493 None:intergenic 25.0%
! ATGAAGTTGAAATTAAATCC+AGG + chr2_4:33942504-33942523 None:intergenic 25.0%
! TGTTTAGGTATGTAAAAAGT+AGG - chr2_4:33942562-33942581 Msa0325830:three_prime_UTR 25.0%
!! TTACTTGAGTTTTTAATGTC+GGG - chr2_4:33943279-33943298 Msa0325830:intron 25.0%
!! AAGTAAATGCTGCTTAATAT+TGG + chr2_4:33943318-33943337 None:intergenic 25.0%
! AATATTAAGCAGCATTTACT+TGG - chr2_4:33943317-33943336 Msa0325830:intron 25.0%
! ATATTAAGCAGCATTTACTT+GGG - chr2_4:33943318-33943337 Msa0325830:intron 25.0%
! TAAAAAAAGTCAGTATCAGT+AGG + chr2_4:33943457-33943476 None:intergenic 25.0%
!! AACTATAACACTTACAGTTT+TGG - chr2_4:33943689-33943708 Msa0325830:intron 25.0%
! CAAATAAATTAGCAATTCCA+AGG + chr2_4:33943772-33943791 None:intergenic 25.0%
! GGAATTGCTAATTTATTTGT+CGG - chr2_4:33943773-33943792 Msa0325830:intron 25.0%
! TCTTAATAACAACTAGATGT+AGG + chr2_4:33944008-33944027 None:intergenic 25.0%
! TCACATCAATAAACTAATAG+AGG - chr2_4:33944077-33944096 Msa0325830:intron 25.0%
!! TTGTCAATAGACTTTTAAAC+TGG - chr2_4:33944120-33944139 Msa0325830:intron 25.0%
! TGCTAGTTATTGTATAATCA+TGG - chr2_4:33944214-33944233 Msa0325830:intron 25.0%
!!! AAAAGCATTTCTAGCTAATA+AGG - chr2_4:33944472-33944491 Msa0325830:intron 25.0%
! ATTAAACTCAGATGTTTACT+CGG + chr2_4:33944663-33944682 None:intergenic 25.0%
!!! ATATTTTTGGTGGAAAAGAA+TGG + chr2_4:33942474-33942493 None:intergenic 25.0%
! ATGAAGTTGAAATTAAATCC+AGG + chr2_4:33942504-33942523 None:intergenic 25.0%
! TGTTTAGGTATGTAAAAAGT+AGG - chr2_4:33942562-33942581 Msa0325830:three_prime_UTR 25.0%
!! TTACTTGAGTTTTTAATGTC+GGG - chr2_4:33943279-33943298 Msa0325830:intron 25.0%
!! AAGTAAATGCTGCTTAATAT+TGG + chr2_4:33943318-33943337 None:intergenic 25.0%
! AATATTAAGCAGCATTTACT+TGG - chr2_4:33943317-33943336 Msa0325830:intron 25.0%
! ATATTAAGCAGCATTTACTT+GGG - chr2_4:33943318-33943337 Msa0325830:intron 25.0%
! TAAAAAAAGTCAGTATCAGT+AGG + chr2_4:33943457-33943476 None:intergenic 25.0%
!! AACTATAACACTTACAGTTT+TGG - chr2_4:33943689-33943708 Msa0325830:intron 25.0%
! CAAATAAATTAGCAATTCCA+AGG + chr2_4:33943772-33943791 None:intergenic 25.0%
! GGAATTGCTAATTTATTTGT+CGG - chr2_4:33943773-33943792 Msa0325830:intron 25.0%
! TCTTAATAACAACTAGATGT+AGG + chr2_4:33944008-33944027 None:intergenic 25.0%
! TCACATCAATAAACTAATAG+AGG - chr2_4:33944077-33944096 Msa0325830:intron 25.0%
!! TTGTCAATAGACTTTTAAAC+TGG - chr2_4:33944120-33944139 Msa0325830:intron 25.0%
! TGCTAGTTATTGTATAATCA+TGG - chr2_4:33944214-33944233 Msa0325830:intron 25.0%
!!! AAAAGCATTTCTAGCTAATA+AGG - chr2_4:33944472-33944491 Msa0325830:intron 25.0%
! ATTAAACTCAGATGTTTACT+CGG + chr2_4:33944663-33944682 None:intergenic 25.0%
!!! AGGAGAATGTATATTTTTGG+TGG + chr2_4:33942484-33942503 None:intergenic 30.0%
ACCAAAAATATACATTCTCC+TGG - chr2_4:33942483-33942502 Msa0325830:three_prime_UTR 30.0%
! TCCAGGAGAATGTATATTTT+TGG + chr2_4:33942487-33942506 None:intergenic 30.0%
TGAATGAGCAAGAGAAATAA+AGG + chr2_4:33942528-33942547 None:intergenic 30.0%
AGATCATTAGAAGACTCTAA+AGG + chr2_4:33942642-33942661 None:intergenic 30.0%
CTATTAACCTTCAATTCTGA+TGG + chr2_4:33942732-33942751 None:intergenic 30.0%
CATCAGAATTGAAGGTTAAT+AGG - chr2_4:33942730-33942749 Msa0325830:CDS 30.0%
GAATTGAAGGTTAATAGGAA+AGG - chr2_4:33942735-33942754 Msa0325830:CDS 30.0%
CAAAATACGATTCAAAAGCT+CGG + chr2_4:33942877-33942896 None:intergenic 30.0%
!!! CTTGTTTTGATCTAAAACAC+TGG - chr2_4:33942925-33942944 Msa0325830:intron 30.0%
AATAGGTGAAAATTAGGCAA+AGG + chr2_4:33942962-33942981 None:intergenic 30.0%
CTGTCAAATAGGTGAAAATT+AGG + chr2_4:33942968-33942987 None:intergenic 30.0%
ATGAAAATGTTAAGGACTTC+AGG + chr2_4:33943252-33943271 None:intergenic 30.0%
! TACTTGAGTTTTTAATGTCG+GGG - chr2_4:33943280-33943299 Msa0325830:intron 30.0%
AAAAGAAAATAGATCTCCGT+AGG + chr2_4:33943346-33943365 None:intergenic 30.0%
CTGAAATACAGAAATCAGAA+TGG + chr2_4:33943543-33943562 None:intergenic 30.0%
ATCAAGAAGATCTCATAGTT+TGG - chr2_4:33943570-33943589 Msa0325830:CDS 30.0%
! CTATTTTACCGTACAACTTT+CGG + chr2_4:33943622-33943641 None:intergenic 30.0%
!! TATAACACTTACAGTTTTGG+AGG - chr2_4:33943692-33943711 Msa0325830:intron 30.0%
GATGGAGATCAATATACTAA+AGG + chr2_4:33943801-33943820 None:intergenic 30.0%
! ATAATTTCTTGTTTGCTGAC+AGG + chr2_4:33944058-33944077 None:intergenic 30.0%
! TCAATAGACTTTTAAACTGG+TGG - chr2_4:33944123-33944142 Msa0325830:intron 30.0%
! ATTTTTGATGCAGACCTTAT+GGG - chr2_4:33944422-33944441 Msa0325830:CDS 30.0%
! AAGCTGTTGTATTTGATAGT+CGG - chr2_4:33944550-33944569 Msa0325830:CDS 30.0%
!!! AGGAGAATGTATATTTTTGG+TGG + chr2_4:33942484-33942503 None:intergenic 30.0%
ACCAAAAATATACATTCTCC+TGG - chr2_4:33942483-33942502 Msa0325830:three_prime_UTR 30.0%
! TCCAGGAGAATGTATATTTT+TGG + chr2_4:33942487-33942506 None:intergenic 30.0%
TGAATGAGCAAGAGAAATAA+AGG + chr2_4:33942528-33942547 None:intergenic 30.0%
AGATCATTAGAAGACTCTAA+AGG + chr2_4:33942642-33942661 None:intergenic 30.0%
CTATTAACCTTCAATTCTGA+TGG + chr2_4:33942732-33942751 None:intergenic 30.0%
CATCAGAATTGAAGGTTAAT+AGG - chr2_4:33942730-33942749 Msa0325830:CDS 30.0%
GAATTGAAGGTTAATAGGAA+AGG - chr2_4:33942735-33942754 Msa0325830:CDS 30.0%
CAAAATACGATTCAAAAGCT+CGG + chr2_4:33942877-33942896 None:intergenic 30.0%
!!! CTTGTTTTGATCTAAAACAC+TGG - chr2_4:33942925-33942944 Msa0325830:intron 30.0%
AATAGGTGAAAATTAGGCAA+AGG + chr2_4:33942962-33942981 None:intergenic 30.0%
CTGTCAAATAGGTGAAAATT+AGG + chr2_4:33942968-33942987 None:intergenic 30.0%
ATGAAAATGTTAAGGACTTC+AGG + chr2_4:33943252-33943271 None:intergenic 30.0%
! TACTTGAGTTTTTAATGTCG+GGG - chr2_4:33943280-33943299 Msa0325830:intron 30.0%
AAAAGAAAATAGATCTCCGT+AGG + chr2_4:33943346-33943365 None:intergenic 30.0%
CTGAAATACAGAAATCAGAA+TGG + chr2_4:33943543-33943562 None:intergenic 30.0%
ATCAAGAAGATCTCATAGTT+TGG - chr2_4:33943570-33943589 Msa0325830:CDS 30.0%
! CTATTTTACCGTACAACTTT+CGG + chr2_4:33943622-33943641 None:intergenic 30.0%
!! TATAACACTTACAGTTTTGG+AGG - chr2_4:33943692-33943711 Msa0325830:intron 30.0%
GATGGAGATCAATATACTAA+AGG + chr2_4:33943801-33943820 None:intergenic 30.0%
! ATAATTTCTTGTTTGCTGAC+AGG + chr2_4:33944058-33944077 None:intergenic 30.0%
! TCAATAGACTTTTAAACTGG+TGG - chr2_4:33944123-33944142 Msa0325830:intron 30.0%
! ATTTTTGATGCAGACCTTAT+GGG - chr2_4:33944422-33944441 Msa0325830:CDS 30.0%
! AAGCTGTTGTATTTGATAGT+CGG - chr2_4:33944550-33944569 Msa0325830:CDS 30.0%
!! TTTTTGGTGGAAAAGAATGG+AGG + chr2_4:33942471-33942490 None:intergenic 35.0%
ATCAATCCACAAGGTACAAT+AGG + chr2_4:33942666-33942685 None:intergenic 35.0%
!! TTAATAGGAAAGGCATTGCA+TGG - chr2_4:33942745-33942764 Msa0325830:intron 35.0%
! GTTTTCCAAATTTGTGATCG+CGG + chr2_4:33942779-33942798 None:intergenic 35.0%
CGATCACAAATTTGGAAAAC+AGG - chr2_4:33942779-33942798 Msa0325830:intron 35.0%
TTTCAAAATGGTACCTTGAC+TGG - chr2_4:33942816-33942835 Msa0325830:intron 35.0%
! CGAGCTTTTGAATCGTATTT+TGG - chr2_4:33942875-33942894 Msa0325830:intron 35.0%
AACAAGTTGTCACACAAGAA+AGG + chr2_4:33942911-33942930 None:intergenic 35.0%
GTGAAAATTAGGCAAAGGAA+AGG + chr2_4:33942957-33942976 None:intergenic 35.0%
TACCAAGAACTCTGTCAAAT+AGG + chr2_4:33942979-33942998 None:intergenic 35.0%
GCATGAAAAATTGCACTGAA+AGG + chr2_4:33943214-33943233 None:intergenic 35.0%
AAAATGTTAAGGACTTCAGG+TGG + chr2_4:33943249-33943268 None:intergenic 35.0%
TGCTTAATATTGGACGATGA+AGG + chr2_4:33943308-33943327 None:intergenic 35.0%
AGAAATCAGAATGGTCAACA+GGG + chr2_4:33943534-33943553 None:intergenic 35.0%
AAGATCTCATAGTTTGGATG+CGG - chr2_4:33943576-33943595 Msa0325830:CDS 35.0%
GTTGTACGGTAAAATAGAAG+AGG - chr2_4:33943625-33943644 Msa0325830:intron 35.0%
CGGTAAAATAGAAGAGGATT+TGG - chr2_4:33943631-33943650 Msa0325830:intron 35.0%
TTGTTCTATCAACATCTAGC+TGG - chr2_4:33943726-33943745 Msa0325830:intron 35.0%
TGCTTCATATGAAAAGTCCT+AGG - chr2_4:33943831-33943850 Msa0325830:intron 35.0%
TGGACACTGTTATATTACCT+AGG + chr2_4:33943851-33943870 None:intergenic 35.0%
!! ATGCTGCACTTGCTATTATT+TGG - chr2_4:33943922-33943941 Msa0325830:intron 35.0%
! ATAGACTTTTAAACTGGTGG+TGG - chr2_4:33944126-33944145 Msa0325830:intron 35.0%
TCAAGCTCAACAAATGATTG+GGG + chr2_4:33944382-33944401 None:intergenic 35.0%
CTCAAGCTCAACAAATGATT+GGG + chr2_4:33944383-33944402 None:intergenic 35.0%
! CATTTTTGATGCAGACCTTA+TGG - chr2_4:33944421-33944440 Msa0325830:CDS 35.0%
! TTTTTGATGCAGACCTTATG+GGG - chr2_4:33944423-33944442 Msa0325830:CDS 35.0%
!! TTTCTAGCTAATAAGGTACG+TGG - chr2_4:33944479-33944498 Msa0325830:intron 35.0%
!! TCAGTTTTCGCTTTTGTTAC+AGG + chr2_4:33944509-33944528 None:intergenic 35.0%
! TGTATTTGATAGTCGGTACA+TGG - chr2_4:33944557-33944576 Msa0325830:CDS 35.0%
TGGAAACAAGCATATGAGTA+TGG - chr2_4:33944688-33944707 Msa0325830:CDS 35.0%
!! TTTTTGGTGGAAAAGAATGG+AGG + chr2_4:33942471-33942490 None:intergenic 35.0%
ATCAATCCACAAGGTACAAT+AGG + chr2_4:33942666-33942685 None:intergenic 35.0%
!! TTAATAGGAAAGGCATTGCA+TGG - chr2_4:33942745-33942764 Msa0325830:intron 35.0%
! GTTTTCCAAATTTGTGATCG+CGG + chr2_4:33942779-33942798 None:intergenic 35.0%
CGATCACAAATTTGGAAAAC+AGG - chr2_4:33942779-33942798 Msa0325830:intron 35.0%
TTTCAAAATGGTACCTTGAC+TGG - chr2_4:33942816-33942835 Msa0325830:intron 35.0%
! CGAGCTTTTGAATCGTATTT+TGG - chr2_4:33942875-33942894 Msa0325830:intron 35.0%
AACAAGTTGTCACACAAGAA+AGG + chr2_4:33942911-33942930 None:intergenic 35.0%
GTGAAAATTAGGCAAAGGAA+AGG + chr2_4:33942957-33942976 None:intergenic 35.0%
TACCAAGAACTCTGTCAAAT+AGG + chr2_4:33942979-33942998 None:intergenic 35.0%
GCATGAAAAATTGCACTGAA+AGG + chr2_4:33943214-33943233 None:intergenic 35.0%
AAAATGTTAAGGACTTCAGG+TGG + chr2_4:33943249-33943268 None:intergenic 35.0%
TGCTTAATATTGGACGATGA+AGG + chr2_4:33943308-33943327 None:intergenic 35.0%
AGAAATCAGAATGGTCAACA+GGG + chr2_4:33943534-33943553 None:intergenic 35.0%
AAGATCTCATAGTTTGGATG+CGG - chr2_4:33943576-33943595 Msa0325830:CDS 35.0%
GTTGTACGGTAAAATAGAAG+AGG - chr2_4:33943625-33943644 Msa0325830:intron 35.0%
CGGTAAAATAGAAGAGGATT+TGG - chr2_4:33943631-33943650 Msa0325830:intron 35.0%
TTGTTCTATCAACATCTAGC+TGG - chr2_4:33943726-33943745 Msa0325830:intron 35.0%
TGCTTCATATGAAAAGTCCT+AGG - chr2_4:33943831-33943850 Msa0325830:intron 35.0%
TGGACACTGTTATATTACCT+AGG + chr2_4:33943851-33943870 None:intergenic 35.0%
!! ATGCTGCACTTGCTATTATT+TGG - chr2_4:33943922-33943941 Msa0325830:intron 35.0%
! ATAGACTTTTAAACTGGTGG+TGG - chr2_4:33944126-33944145 Msa0325830:intron 35.0%
TCAAGCTCAACAAATGATTG+GGG + chr2_4:33944382-33944401 None:intergenic 35.0%
CTCAAGCTCAACAAATGATT+GGG + chr2_4:33944383-33944402 None:intergenic 35.0%
! CATTTTTGATGCAGACCTTA+TGG - chr2_4:33944421-33944440 Msa0325830:CDS 35.0%
! TTTTTGATGCAGACCTTATG+GGG - chr2_4:33944423-33944442 Msa0325830:CDS 35.0%
!! TTTCTAGCTAATAAGGTACG+TGG - chr2_4:33944479-33944498 Msa0325830:intron 35.0%
!! TCAGTTTTCGCTTTTGTTAC+AGG + chr2_4:33944509-33944528 None:intergenic 35.0%
! TGTATTTGATAGTCGGTACA+TGG - chr2_4:33944557-33944576 Msa0325830:CDS 35.0%
TGGAAACAAGCATATGAGTA+TGG - chr2_4:33944688-33944707 Msa0325830:CDS 35.0%
! GAAGACTCTAAAGGTCTACA+AGG + chr2_4:33942633-33942652 None:intergenic 40.0%
GATCTTCCTATTGTACCTTG+TGG - chr2_4:33942657-33942676 Msa0325830:CDS 40.0%
! TACCTTGTGGATTGATAGCA+TGG - chr2_4:33942670-33942689 Msa0325830:CDS 40.0%
GATACATACAAATTCCGTCG+TGG - chr2_4:33942705-33942724 Msa0325830:CDS 40.0%
TCGGTACTTACTGGAATACT+AGG + chr2_4:33942858-33942877 None:intergenic 40.0%
TTCAAAAGCTCGGTACTTAC+TGG + chr2_4:33942867-33942886 None:intergenic 40.0%
CACCTATTTGACAGAGTTCT+TGG - chr2_4:33942974-33942993 Msa0325830:intron 40.0%
AGCATTTACTTGGGTTCCTA+CGG - chr2_4:33943327-33943346 Msa0325830:intron 40.0%
CAGAAATCAGAATGGTCAAC+AGG + chr2_4:33943535-33943554 None:intergenic 40.0%
TTTACCGTACAACTTTCGGA+AGG + chr2_4:33943618-33943637 None:intergenic 40.0%
GGTGGAAAAAATGACTTCCT+TGG - chr2_4:33943752-33943771 Msa0325830:intron 40.0%
ATTGATCTCCATCATCTTCC+TGG - chr2_4:33943808-33943827 Msa0325830:intron 40.0%
!! GACTTTTCATATGAAGCACC+AGG + chr2_4:33943829-33943848 None:intergenic 40.0%
AGTGCAGCATGATGAATTAG+TGG + chr2_4:33943912-33943931 None:intergenic 40.0%
CAAGCTCAACAAATGATTGG+GGG + chr2_4:33944381-33944400 None:intergenic 40.0%
GCTCAAGCTCAACAAATGAT+TGG + chr2_4:33944384-33944403 None:intergenic 40.0%
CTGCATCAAAAATGAAGCAC+AGG + chr2_4:33944415-33944434 None:intergenic 40.0%
! GAAGACTCTAAAGGTCTACA+AGG + chr2_4:33942633-33942652 None:intergenic 40.0%
GATCTTCCTATTGTACCTTG+TGG - chr2_4:33942657-33942676 Msa0325830:CDS 40.0%
! TACCTTGTGGATTGATAGCA+TGG - chr2_4:33942670-33942689 Msa0325830:CDS 40.0%
GATACATACAAATTCCGTCG+TGG - chr2_4:33942705-33942724 Msa0325830:CDS 40.0%
TCGGTACTTACTGGAATACT+AGG + chr2_4:33942858-33942877 None:intergenic 40.0%
TTCAAAAGCTCGGTACTTAC+TGG + chr2_4:33942867-33942886 None:intergenic 40.0%
CACCTATTTGACAGAGTTCT+TGG - chr2_4:33942974-33942993 Msa0325830:intron 40.0%
AGCATTTACTTGGGTTCCTA+CGG - chr2_4:33943327-33943346 Msa0325830:intron 40.0%
CAGAAATCAGAATGGTCAAC+AGG + chr2_4:33943535-33943554 None:intergenic 40.0%
TTTACCGTACAACTTTCGGA+AGG + chr2_4:33943618-33943637 None:intergenic 40.0%
GGTGGAAAAAATGACTTCCT+TGG - chr2_4:33943752-33943771 Msa0325830:intron 40.0%
ATTGATCTCCATCATCTTCC+TGG - chr2_4:33943808-33943827 Msa0325830:intron 40.0%
!! GACTTTTCATATGAAGCACC+AGG + chr2_4:33943829-33943848 None:intergenic 40.0%
AGTGCAGCATGATGAATTAG+TGG + chr2_4:33943912-33943931 None:intergenic 40.0%
CAAGCTCAACAAATGATTGG+GGG + chr2_4:33944381-33944400 None:intergenic 40.0%
GCTCAAGCTCAACAAATGAT+TGG + chr2_4:33944384-33944403 None:intergenic 40.0%
CTGCATCAAAAATGAAGCAC+AGG + chr2_4:33944415-33944434 None:intergenic 40.0%
! CTCTAAAGGTCTACAAGGAC+TGG + chr2_4:33942628-33942647 None:intergenic 45.0%
CTCCATGCTATCAATCCACA+AGG + chr2_4:33942675-33942694 None:intergenic 45.0%
TCAATTCTGATGGTCCACGA+CGG + chr2_4:33942722-33942741 None:intergenic 45.0%
TCGTGGACCATCAGAATTGA+AGG - chr2_4:33942722-33942741 Msa0325830:CDS 45.0%
AGTGACCGCGATCACAAATT+TGG - chr2_4:33942771-33942790 Msa0325830:intron 45.0%
CAAAATGGTACCTTGACTGG+AGG - chr2_4:33942819-33942838 Msa0325830:intron 45.0%
TCTATCAACATCTAGCTGGC+TGG - chr2_4:33943730-33943749 Msa0325830:intron 45.0%
CTATCAACATCTAGCTGGCT+GGG - chr2_4:33943731-33943750 Msa0325830:intron 45.0%
! ATGAAGCACCAGGAAGATGA+TGG + chr2_4:33943819-33943838 None:intergenic 45.0%
! CTCTAAAGGTCTACAAGGAC+TGG + chr2_4:33942628-33942647 None:intergenic 45.0%
CTCCATGCTATCAATCCACA+AGG + chr2_4:33942675-33942694 None:intergenic 45.0%
TCAATTCTGATGGTCCACGA+CGG + chr2_4:33942722-33942741 None:intergenic 45.0%
TCGTGGACCATCAGAATTGA+AGG - chr2_4:33942722-33942741 Msa0325830:CDS 45.0%
AGTGACCGCGATCACAAATT+TGG - chr2_4:33942771-33942790 Msa0325830:intron 45.0%
CAAAATGGTACCTTGACTGG+AGG - chr2_4:33942819-33942838 Msa0325830:intron 45.0%
TCTATCAACATCTAGCTGGC+TGG - chr2_4:33943730-33943749 Msa0325830:intron 45.0%
CTATCAACATCTAGCTGGCT+GGG - chr2_4:33943731-33943750 Msa0325830:intron 45.0%
! ATGAAGCACCAGGAAGATGA+TGG + chr2_4:33943819-33943838 None:intergenic 45.0%
!! AAAAAAAATAATAGAAAAAA+AGG + chr2_4:33943980-33943999 None:intergenic 5.0%
!! AAAAAAAATAATAGAAAAAA+AGG + chr2_4:33943980-33943999 None:intergenic 5.0%
AGTGATCAGCAGCTCGTACA+TGG - chr2_4:33942585-33942604 Msa0325830:three_prime_UTR 50.0%
CCGTACAACTTTCGGAAGGT+GGG + chr2_4:33943614-33943633 None:intergenic 50.0%
CCCACCTTCCGAAAGTTGTA+CGG - chr2_4:33943611-33943630 Msa0325830:intron 50.0%
ACCGTACAACTTTCGGAAGG+TGG + chr2_4:33943615-33943634 None:intergenic 50.0%
ATGCAGACCTTATGGGGACA+CGG - chr2_4:33944429-33944448 Msa0325830:intron 50.0%
AGTGATCAGCAGCTCGTACA+TGG - chr2_4:33942585-33942604 Msa0325830:three_prime_UTR 50.0%
CCGTACAACTTTCGGAAGGT+GGG + chr2_4:33943614-33943633 None:intergenic 50.0%
CCCACCTTCCGAAAGTTGTA+CGG - chr2_4:33943611-33943630 Msa0325830:intron 50.0%
ACCGTACAACTTTCGGAAGG+TGG + chr2_4:33943615-33943634 None:intergenic 50.0%
ATGCAGACCTTATGGGGACA+CGG - chr2_4:33944429-33944448 Msa0325830:intron 50.0%
CAGCAGCTCGTACATGGACT+CGG - chr2_4:33942591-33942610 Msa0325830:three_prime_UTR 55.0%
CAGCTTTGCACCTCCAGTCA+AGG + chr2_4:33942832-33942851 None:intergenic 55.0%
TCAACATCTAGCTGGCTGGG+TGG - chr2_4:33943734-33943753 Msa0325830:intron 55.0%
GAGTAGACCGTGTCCCCATA+AGG + chr2_4:33944439-33944458 None:intergenic 55.0%
GGGACACGGTCTACTCAACA+TGG - chr2_4:33944443-33944462 Msa0325830:intron 55.0%
CAGCAGCTCGTACATGGACT+CGG - chr2_4:33942591-33942610 Msa0325830:three_prime_UTR 55.0%
CAGCTTTGCACCTCCAGTCA+AGG + chr2_4:33942832-33942851 None:intergenic 55.0%
TCAACATCTAGCTGGCTGGG+TGG - chr2_4:33943734-33943753 Msa0325830:intron 55.0%
GAGTAGACCGTGTCCCCATA+AGG + chr2_4:33944439-33944458 None:intergenic 55.0%
GGGACACGGTCTACTCAACA+TGG - chr2_4:33944443-33944462 Msa0325830:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 33942453 33944737 33942453 ID=Msa0325830;Name=Msa0325830
chr2_4 mRNA 33942453 33944737 33942453 ID=Msa0325830-mRNA-1;Parent=Msa0325830;Name=Msa0325830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.33|0.25|1|0.66|0.5|4|172|236
chr2_4 exon 33942453 33942755 33942453 ID=Msa0325830-mRNA-1:exon:10875;Parent=Msa0325830-mRNA-1
chr2_4 exon 33943387 33943627 33943387 ID=Msa0325830-mRNA-1:exon:10874;Parent=Msa0325830-mRNA-1
chr2_4 exon 33944324 33944446 33944324 ID=Msa0325830-mRNA-1:exon:10873;Parent=Msa0325830-mRNA-1
chr2_4 exon 33944522 33944737 33944522 ID=Msa0325830-mRNA-1:exon:10872;Parent=Msa0325830-mRNA-1
chr2_4 CDS 33944522 33944737 33944522 ID=Msa0325830-mRNA-1:cds;Parent=Msa0325830-mRNA-1
chr2_4 CDS 33944324 33944446 33944324 ID=Msa0325830-mRNA-1:cds;Parent=Msa0325830-mRNA-1
chr2_4 CDS 33943387 33943627 33943387 ID=Msa0325830-mRNA-1:cds;Parent=Msa0325830-mRNA-1
chr2_4 CDS 33942625 33942755 33942625 ID=Msa0325830-mRNA-1:cds;Parent=Msa0325830-mRNA-1
chr2_4 three_prime_UTR 33942453 33942624 33942453 ID=Msa0325830-mRNA-1:three_prime_utr;Parent=Msa0325830-mRNA-1
Gene Sequence

>Msa0325830

ATGTTTTTGTTAATTCCTCCATTCTTTTCCACCAAAAATATACATTCTCCTGGATTTAATTTCAACTTCATACCTTTATTTCTCTTGCTCATTCAAAATATTCACAATTTGTTTAGGTATGTAAAAAGTAGGAGTGATCAGCAGCTCGTACATGGACTCGGATACAATGATACCAGTCCTTGTAGACCTTTAGAGTCTTCTAATGATCTTCCTATTGTTAATAGGAAAGGCATTGCATGGAAGAGTGACCGCGATCACAAATTTGGAAAACAGGTTTACCCATTTAATTTTCAAAATGGTACCTTGACTGGAGGTGCAAAGCTGAATCCTAGTATTCCACTTAGTGATCAAGAAGATCTCATAGTTTGGATGCGGACTGCTGCTCTTCCCACCTTCCGAAAGTTGTACGGTAAAATAGAAGAGGATTTGGATGCAGATGATGTTATAGTAGTCAATCTAAAGAATAACTATAACACTTACAGTTTTGGAGGAAAGAAGAAGCTTGTTCTATCAACATCTAGCTGGCTGGGTGGAAAAAATGACTTCCTTGGAATTGCTAATTTATTTGTCGGAACCTTTAACCTTATGGGGACACGGTCTACTCAACATGGAATAAGAAAAGCATTTCTAGCTAATAAGGTACGTGGTACACCTGTAACAAAAGCGAAAACTGAAGATACATATTCTTGTAACAAAAGCTGTTGTATTTGA

Protein sequence

>Msa0325830

MFLLIPPFFSTKNIHSPGFNFNFIPLFLLLIQNIHNLFRYVKSRSDQQLVHGLGYNDTSPCRPLESSNDLPIVNRKGIAWKSDRDHKFGKQVYPFNFQNGTLTGGAKLNPSIPLSDQEDLIVWMRTAALPTFRKLYGKIEEDLDADDVIVVNLKNNYNTYSFGGKKKLVLSTSSWLGGKNDFLGIANLFVGTFNLMGTRSTQHGIRKAFLANKVRGTPVTKAKTEDTYSCNKSCCI*