AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0622450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622450 MtrunA17_Chr7g0249261 98.131 214 4 0 1 214 1 214 1.13e-153 424
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0622450 AT4G12800.1 79.358 218 39 2 2 214 3 219 2.72e-102 295
Msa0622450 AT4G12800.2 79.358 218 39 2 2 214 65 281 3.39e-102 297

Find 96 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTCCTTCTTTATGTTT+TGG 0.217771 4_2:+74883247 Msa0622450:CDS
GCAGGCTCTCTTGCAGCTGC+TGG 0.244287 4_2:+74883032 Msa0622450:CDS
ATTTGATTGATAGTTGAAAT+TGG 0.261868 4_2:+74883520 Msa0622450:three_prime_UTR
AGCATTTGCCTTACAATCTA+TGG 0.270605 4_2:+74883071 Msa0622450:CDS
CTTGAATTTGCATTGAACTA+TGG 0.275527 4_2:+74881958 Msa0622450:five_prime_UTR
CAGGCTCTCTTGCAGCTGCT+GGG 0.294839 4_2:+74883033 Msa0622450:CDS
GCTCCATCTTTGACCTTAAC+AGG 0.301389 4_2:+74883128 Msa0622450:CDS
GCATATTCGGTGTTCCTTAG+AGG 0.320651 4_2:-74883002 None:intergenic
GTGGCATTTCTGGTGTTACC+TGG 0.330300 4_2:+74883222 Msa0622450:CDS
TCGTTAAAGCCGGGCCTCTA+AGG 0.342506 4_2:+74882988 Msa0622450:CDS
GCCTGCTGATCCGGCATATT+CGG 0.350236 4_2:-74883015 None:intergenic
TTTGTTTACTTGACAAAGTA+AGG 0.358068 4_2:-74883275 None:intergenic
GCAATTTAACTTCACTGTTA+AGG 0.363545 4_2:+74882185 Msa0622450:CDS
TCAGCTGTTTGGAGCGGATC+GGG 0.396097 4_2:-74883164 None:intergenic
TGGACCAACCATCAGCTGTT+TGG 0.398888 4_2:-74883175 None:intergenic
TGCAAGAGAGCCTGCTGATC+CGG 0.399513 4_2:-74883024 None:intergenic
CATAGTTCAATGCAAATTCA+AGG 0.412347 4_2:-74881957 None:intergenic
CAATGCAAATTCAAGGTTTG+TGG 0.412400 4_2:-74881950 None:intergenic
AAGTTAAATTGCCTTCTAGA+AGG 0.412684 4_2:-74882174 None:intergenic
ATGAAACTCCATAGATTGTA+AGG 0.413757 4_2:-74883079 None:intergenic
GTCCAGCTTCACTAGACCTT+TGG 0.414369 4_2:+74882107 Msa0622450:CDS
GTTTCAAGGCTTCCAATGAA+TGG 0.415748 4_2:-74882837 None:intergenic
TGCAGTGAACCCACTACTTA+GGG 0.418933 4_2:+74882920 Msa0622450:CDS
ACAAGTGGGCTTGATGTAAC+TGG 0.422772 4_2:-74882861 None:intergenic
GTCACACCTAGGGGACTTTG+TGG 0.427623 4_2:+74882129 Msa0622450:CDS
CTGCTTCTTACGGCCTGTTA+AGG 0.438239 4_2:-74883141 None:intergenic
TCCATCAGTTGCCTTCTAGA+AGG 0.443118 4_2:+74882163 Msa0622450:CDS
ACCGAATATGCCGGATCAGC+AGG 0.445265 4_2:+74883014 Msa0622450:CDS
GAGGCCCGGCTTTAACGAAC+GGG 0.446312 4_2:-74882983 None:intergenic
TTTGTGTGCTAATGAGATAA+TGG 0.449976 4_2:+74883329 Msa0622450:three_prime_UTR
CTGCAGTGAACCCACTACTT+AGG 0.453704 4_2:+74882919 Msa0622450:CDS
ATCAACGGTGACCCATTCAT+TGG 0.455192 4_2:+74882825 Msa0622450:CDS
CATGGCAGCTGCTTCTCCTA+TGG 0.458111 4_2:+74882071 Msa0622450:exon
TTCACTGCAGTTCTGTAGCC+TGG 0.467820 4_2:-74882906 None:intergenic
CGTTGATTGGTTGAATCACT+TGG 0.469160 4_2:-74882809 None:intergenic
GCGGATCGGGCTGCTTCTTA+CGG 0.470007 4_2:-74883151 None:intergenic
TTCGGTGTTCCTTAGAGGCC+CGG 0.471580 4_2:-74882997 None:intergenic
TTTCAAGGCTTCCAATGAAT+GGG 0.476089 4_2:-74882836 None:intergenic
ATGAATGGGTCACCGTTGAT+TGG 0.494570 4_2:-74882822 None:intergenic
AGTTCTGTTGATTCCACAAG+TGG 0.497526 4_2:-74882043 None:intergenic
GGAGTTTCATCATTCAATGA+AGG 0.498940 4_2:+74883092 Msa0622450:CDS
GTAGGCCCGTTCGTTAAAGC+CGG 0.500427 4_2:+74882978 Msa0622450:CDS
CATCAAGCCCACTTGTTGCA+TGG 0.506359 4_2:+74882868 Msa0622450:CDS
TCTCTGTGCTGCTCCACTTG+TGG 0.508713 4_2:+74882030 Msa0622450:five_prime_UTR
CGGCCTGTTAAGGTCAAAGA+TGG 0.509120 4_2:-74883131 None:intergenic
GACCAAAGGTCTAGTGAAGC+TGG 0.510695 4_2:-74882109 None:intergenic
GATGGTTGGTCCAAGTTCAC+TGG 0.512448 4_2:+74883185 Msa0622450:CDS
TGGCATTTCTGGTGTTACCT+GGG 0.515577 4_2:+74883223 Msa0622450:CDS
TAAGGCAATCCAATCTGAAA+AGG 0.518673 4_2:+74882203 Msa0622450:CDS
TAGTGAAGCTGGACTTGAGT+TGG 0.519806 4_2:-74882098 None:intergenic
TACACACACTGGTTGAAATG+AGG 0.519894 4_2:-74882002 None:intergenic
TTGATGTAACTGGAGTTTCA+AGG 0.522174 4_2:-74882851 None:intergenic
GGCCTACGAGGAAGAATCCA+TGG 0.522700 4_2:-74882962 None:intergenic
TAGACCTTTGGTCACACCTA+GGG 0.524311 4_2:+74882119 Msa0622450:CDS
GACTTGAGTTGGCTTGCCAT+AGG 0.524629 4_2:-74882087 None:intergenic
GAAGATCCAAAACATAAAGA+AGG 0.530701 4_2:-74883253 None:intergenic
TAGAAGGCAACTGATGGAGT+GGG 0.531155 4_2:-74882158 None:intergenic
TGGTACCTCTCCAACTTACC+AGG 0.533263 4_2:+74882888 Msa0622450:CDS
TAGGCCCGTTCGTTAAAGCC+GGG 0.536476 4_2:+74882979 Msa0622450:CDS
CGCTCCAAACAGCTGATGGT+TGG 0.542041 4_2:+74883171 Msa0622450:CDS
ATAAAGAAGGAAGTAAGCCC+AGG 0.543130 4_2:-74883240 None:intergenic
GTTGGTCCAAGTTCACTGGT+GGG 0.544476 4_2:+74883189 Msa0622450:CDS
ATTGAAGTCGGCTTAGCCCA+TGG 0.544487 4_2:+74882945 Msa0622450:CDS
ATCAGCTGTTTGGAGCGGAT+CGG 0.546589 4_2:-74883165 None:intergenic
CTAAGGAACACCGAATATGC+CGG 0.551083 4_2:+74883005 Msa0622450:CDS
GCCTTCTAGAAGGCAACTGA+TGG 0.551586 4_2:-74882164 None:intergenic
CTTCAATTCCCCTAAGTAGT+GGG 0.556813 4_2:-74882929 None:intergenic
AGAGGCCCGGCTTTAACGAA+CGG 0.558183 4_2:-74882984 None:intergenic
GATCCGCTCCAAACAGCTGA+TGG 0.563858 4_2:+74883167 Msa0622450:CDS
GGTTGGTCCAAGTTCACTGG+TGG 0.565191 4_2:+74883188 Msa0622450:CDS
AGTTCTGTAGCCTGGTAAGT+TGG 0.565590 4_2:-74882898 None:intergenic
CTACTTAGGGGAATTGAAGT+CGG 0.568063 4_2:+74882933 Msa0622450:CDS
ACTTCAATTCCCCTAAGTAG+TGG 0.569195 4_2:-74882930 None:intergenic
ACACACACTGGTTGAAATGA+GGG 0.573827 4_2:-74882001 None:intergenic
CAGAGAGTTGTTACACACAC+TGG 0.590670 4_2:-74882013 None:intergenic
GAAGAGCCACAAAGTCCCCT+AGG 0.592421 4_2:-74882135 None:intergenic
CTAGACCTTTGGTCACACCT+AGG 0.596879 4_2:+74882118 Msa0622450:CDS
GAGAGGTACCATGCAACAAG+TGG 0.599829 4_2:-74882876 None:intergenic
CTAGAAGGCAACTGATGGAG+TGG 0.603613 4_2:-74882159 None:intergenic
ATGGAAGTACTTAGCCACTC+TGG 0.608137 4_2:+74881977 Msa0622450:five_prime_UTR
TATCAGCCAATGAGAAGTGA+GGG 0.611980 4_2:+74881917 None:intergenic
GCCCATGGATTCTTCCTCGT+AGG 0.621168 4_2:+74882960 Msa0622450:CDS
AATCAACAGAACTTAAGTCA+TGG 0.622961 4_2:+74882053 Msa0622450:exon
TGTAGCCTGGTAAGTTGGAG+AGG 0.625193 4_2:-74882893 None:intergenic
GCCTACGAGGAAGAATCCAT+GGG 0.633522 4_2:-74882961 None:intergenic
CTTTAACGAACGGGCCTACG+AGG 0.656397 4_2:-74882974 None:intergenic
CAACCATCAGCTGTTTGGAG+CGG 0.658464 4_2:-74883170 None:intergenic
ATATCAGCCAATGAGAAGTG+AGG 0.663341 4_2:+74881916 None:intergenic
AGACCTTTGGTCACACCTAG+GGG 0.664459 4_2:+74882120 Msa0622450:CDS
AGATTGTAAGGCAAATGCTG+AGG 0.667416 4_2:-74883067 None:intergenic
GCAGTGAACCCACTACTTAG+GGG 0.670055 4_2:+74882921 Msa0622450:CDS
AGAAGGCAACTGATGGAGTG+GGG 0.675058 4_2:-74882157 None:intergenic
CAAGTGATTCAACCAATCAA+CGG 0.677130 4_2:+74882810 Msa0622450:CDS
AGAGGTACCATGCAACAAGT+GGG 0.679084 4_2:-74882875 None:intergenic
AGTCCCCTAGGTGTGACCAA+AGG 0.679971 4_2:-74882123 None:intergenic
GTTGAAATGAGGGACCAGAG+TGG 0.760347 4_2:-74881991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAACTAACTATATAAA+GGG - chr4_2:74882361-74882380 None:intergenic 15.0%
!! AAACATAACTAACTATATAA+AGG - chr4_2:74882362-74882381 None:intergenic 15.0%
!! TTGAATTATGTAAAAATTGA+TGG + chr4_2:74883447-74883466 Msa0622450:three_prime_UTR 15.0%
!! AACATAACTAACTATATAAA+GGG - chr4_2:74882361-74882380 None:intergenic 15.0%
!! AAACATAACTAACTATATAA+AGG - chr4_2:74882362-74882381 None:intergenic 15.0%
!! TTGAATTATGTAAAAATTGA+TGG + chr4_2:74883447-74883466 Msa0622450:three_prime_UTR 15.0%
!!! TTGCTAATGTATTTTAACTA+TGG - chr4_2:74882313-74882332 None:intergenic 20.0%
!! AACATGTTCATTATTTAAAG+TGG + chr4_2:74882466-74882485 Msa0622450:intron 20.0%
!! TATATATATGTTCATTGCTT+AGG + chr4_2:74882509-74882528 Msa0622450:intron 20.0%
!! GTTCATTTCTATAATTGAAT+AGG + chr4_2:74882672-74882691 Msa0622450:intron 20.0%
!! ATTGAGTCATTTATTTCAAT+TGG + chr4_2:74882760-74882779 Msa0622450:intron 20.0%
!! TATGTAAAAATTGATGGAAA+TGG + chr4_2:74883453-74883472 Msa0622450:three_prime_UTR 20.0%
!!! ATTTGATTGATAGTTGAAAT+TGG + chr4_2:74883520-74883539 Msa0622450:three_prime_UTR 20.0%
!!! TTGCTAATGTATTTTAACTA+TGG - chr4_2:74882313-74882332 None:intergenic 20.0%
!! AACATGTTCATTATTTAAAG+TGG + chr4_2:74882466-74882485 Msa0622450:intron 20.0%
!! TATATATATGTTCATTGCTT+AGG + chr4_2:74882509-74882528 Msa0622450:intron 20.0%
!! GTTCATTTCTATAATTGAAT+AGG + chr4_2:74882672-74882691 Msa0622450:intron 20.0%
!! ATTGAGTCATTTATTTCAAT+TGG + chr4_2:74882760-74882779 Msa0622450:intron 20.0%
!! TATGTAAAAATTGATGGAAA+TGG + chr4_2:74883453-74883472 Msa0622450:three_prime_UTR 20.0%
!!! ATTTGATTGATAGTTGAAAT+TGG + chr4_2:74883520-74883539 Msa0622450:three_prime_UTR 20.0%
!! TAAACAAAGAGAGTATACAT+AGG - chr4_2:74882249-74882268 None:intergenic 25.0%
!! GCTTTTGTTAAAGTTGTTAT+AGG - chr4_2:74882729-74882748 None:intergenic 25.0%
! GAAATAAATGACTCAATTTC+AGG - chr4_2:74882757-74882776 None:intergenic 25.0%
!! TTACTTCCTTCTTTATGTTT+TGG + chr4_2:74883247-74883266 Msa0622450:CDS 25.0%
! TTTGTTTACTTGACAAAGTA+AGG - chr4_2:74883278-74883297 None:intergenic 25.0%
!! TAAACAAAGAGAGTATACAT+AGG - chr4_2:74882249-74882268 None:intergenic 25.0%
!! GCTTTTGTTAAAGTTGTTAT+AGG - chr4_2:74882729-74882748 None:intergenic 25.0%
! GAAATAAATGACTCAATTTC+AGG - chr4_2:74882757-74882776 None:intergenic 25.0%
!! TTACTTCCTTCTTTATGTTT+TGG + chr4_2:74883247-74883266 Msa0622450:CDS 25.0%
! TTTGTTTACTTGACAAAGTA+AGG - chr4_2:74883278-74883297 None:intergenic 25.0%
CATAGTTCAATGCAAATTCA+AGG - chr4_2:74881960-74881979 None:intergenic 30.0%
CTTGAATTTGCATTGAACTA+TGG + chr4_2:74881958-74881977 Msa0622450:five_prime_UTR 30.0%
AATCAACAGAACTTAAGTCA+TGG + chr4_2:74882053-74882072 Msa0622450:exon 30.0%
AAGTTAAATTGCCTTCTAGA+AGG - chr4_2:74882177-74882196 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG + chr4_2:74882185-74882204 Msa0622450:CDS 30.0%
! AGAGAGTATACATAGGTAAT+AGG - chr4_2:74882242-74882261 None:intergenic 30.0%
!! AGATAAAGTGGACTAGATTA+TGG - chr4_2:74882284-74882303 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG - chr4_2:74882296-74882315 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG - chr4_2:74882404-74882423 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG + chr4_2:74882513-74882532 Msa0622450:intron 30.0%
!! TGTGTAATTTGTTCATCACT+TGG + chr4_2:74882600-74882619 Msa0622450:intron 30.0%
ATGAAACTCCATAGATTGTA+AGG - chr4_2:74883082-74883101 None:intergenic 30.0%
GAAGATCCAAAACATAAAGA+AGG - chr4_2:74883256-74883275 None:intergenic 30.0%
TTTGTGTGCTAATGAGATAA+TGG + chr4_2:74883329-74883348 Msa0622450:three_prime_UTR 30.0%
CATAGTTCAATGCAAATTCA+AGG - chr4_2:74881960-74881979 None:intergenic 30.0%
CTTGAATTTGCATTGAACTA+TGG + chr4_2:74881958-74881977 Msa0622450:five_prime_UTR 30.0%
AATCAACAGAACTTAAGTCA+TGG + chr4_2:74882053-74882072 Msa0622450:exon 30.0%
AAGTTAAATTGCCTTCTAGA+AGG - chr4_2:74882177-74882196 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG + chr4_2:74882185-74882204 Msa0622450:CDS 30.0%
! AGAGAGTATACATAGGTAAT+AGG - chr4_2:74882242-74882261 None:intergenic 30.0%
!! AGATAAAGTGGACTAGATTA+TGG - chr4_2:74882284-74882303 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG - chr4_2:74882296-74882315 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG - chr4_2:74882404-74882423 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG + chr4_2:74882513-74882532 Msa0622450:intron 30.0%
!! TGTGTAATTTGTTCATCACT+TGG + chr4_2:74882600-74882619 Msa0622450:intron 30.0%
ATGAAACTCCATAGATTGTA+AGG - chr4_2:74883082-74883101 None:intergenic 30.0%
GAAGATCCAAAACATAAAGA+AGG - chr4_2:74883256-74883275 None:intergenic 30.0%
TTTGTGTGCTAATGAGATAA+TGG + chr4_2:74883329-74883348 Msa0622450:three_prime_UTR 30.0%
CAATGCAAATTCAAGGTTTG+TGG - chr4_2:74881953-74881972 None:intergenic 35.0%
TAAGGCAATCCAATCTGAAA+AGG + chr4_2:74882203-74882222 Msa0622450:CDS 35.0%
! AGTAGCATACCTTTTCAGAT+TGG - chr4_2:74882215-74882234 None:intergenic 35.0%
GAGTATACATAGGTAATAGG+AGG - chr4_2:74882239-74882258 None:intergenic 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG + chr4_2:74882527-74882546 Msa0622450:intron 35.0%
CCTATGACAGTAGTCAAAAA+CGG + chr4_2:74882625-74882644 Msa0622450:intron 35.0%
! TGGTAATTTTGCTGCAACAA+TGG - chr4_2:74882792-74882811 None:intergenic 35.0%
CAAGTGATTCAACCAATCAA+CGG + chr4_2:74882810-74882829 Msa0622450:CDS 35.0%
TTTCAAGGCTTCCAATGAAT+GGG - chr4_2:74882839-74882858 None:intergenic 35.0%
TTGATGTAACTGGAGTTTCA+AGG - chr4_2:74882854-74882873 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG + chr4_2:74883071-74883090 Msa0622450:CDS 35.0%
GGAGTTTCATCATTCAATGA+AGG + chr4_2:74883092-74883111 Msa0622450:CDS 35.0%
!! TTTTTCTTTGGTGGCATTTC+TGG + chr4_2:74883212-74883231 Msa0622450:CDS 35.0%
CAATGCAAATTCAAGGTTTG+TGG - chr4_2:74881953-74881972 None:intergenic 35.0%
TAAGGCAATCCAATCTGAAA+AGG + chr4_2:74882203-74882222 Msa0622450:CDS 35.0%
! AGTAGCATACCTTTTCAGAT+TGG - chr4_2:74882215-74882234 None:intergenic 35.0%
GAGTATACATAGGTAATAGG+AGG - chr4_2:74882239-74882258 None:intergenic 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG + chr4_2:74882527-74882546 Msa0622450:intron 35.0%
CCTATGACAGTAGTCAAAAA+CGG + chr4_2:74882625-74882644 Msa0622450:intron 35.0%
! TGGTAATTTTGCTGCAACAA+TGG - chr4_2:74882792-74882811 None:intergenic 35.0%
CAAGTGATTCAACCAATCAA+CGG + chr4_2:74882810-74882829 Msa0622450:CDS 35.0%
TTTCAAGGCTTCCAATGAAT+GGG - chr4_2:74882839-74882858 None:intergenic 35.0%
TTGATGTAACTGGAGTTTCA+AGG - chr4_2:74882854-74882873 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG + chr4_2:74883071-74883090 Msa0622450:CDS 35.0%
GGAGTTTCATCATTCAATGA+AGG + chr4_2:74883092-74883111 Msa0622450:CDS 35.0%
!! TTTTTCTTTGGTGGCATTTC+TGG + chr4_2:74883212-74883231 Msa0622450:CDS 35.0%
! ACACACACTGGTTGAAATGA+GGG - chr4_2:74882004-74882023 None:intergenic 40.0%
! TACACACACTGGTTGAAATG+AGG - chr4_2:74882005-74882024 None:intergenic 40.0%
!! AGTTCTGTTGATTCCACAAG+TGG - chr4_2:74882046-74882065 None:intergenic 40.0%
!! CCGTTTTTGACTACTGTCAT+AGG - chr4_2:74882628-74882647 None:intergenic 40.0%
! CGTTGATTGGTTGAATCACT+TGG - chr4_2:74882812-74882831 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG - chr4_2:74882840-74882859 None:intergenic 40.0%
CTTCAATTCCCCTAAGTAGT+GGG - chr4_2:74882932-74882951 None:intergenic 40.0%
ACTTCAATTCCCCTAAGTAG+TGG - chr4_2:74882933-74882952 None:intergenic 40.0%
CTACTTAGGGGAATTGAAGT+CGG + chr4_2:74882933-74882952 Msa0622450:CDS 40.0%
AGATTGTAAGGCAAATGCTG+AGG - chr4_2:74883070-74883089 None:intergenic 40.0%
!!! TTCACTGGTGGGTTTTTCTT+TGG + chr4_2:74883200-74883219 Msa0622450:CDS 40.0%
ATAAAGAAGGAAGTAAGCCC+AGG - chr4_2:74883243-74883262 None:intergenic 40.0%
! ACACACACTGGTTGAAATGA+GGG - chr4_2:74882004-74882023 None:intergenic 40.0%
! TACACACACTGGTTGAAATG+AGG - chr4_2:74882005-74882024 None:intergenic 40.0%
!! AGTTCTGTTGATTCCACAAG+TGG - chr4_2:74882046-74882065 None:intergenic 40.0%
!! CCGTTTTTGACTACTGTCAT+AGG - chr4_2:74882628-74882647 None:intergenic 40.0%
! CGTTGATTGGTTGAATCACT+TGG - chr4_2:74882812-74882831 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG - chr4_2:74882840-74882859 None:intergenic 40.0%
CTTCAATTCCCCTAAGTAGT+GGG - chr4_2:74882932-74882951 None:intergenic 40.0%
ACTTCAATTCCCCTAAGTAG+TGG - chr4_2:74882933-74882952 None:intergenic 40.0%
CTACTTAGGGGAATTGAAGT+CGG + chr4_2:74882933-74882952 Msa0622450:CDS 40.0%
AGATTGTAAGGCAAATGCTG+AGG - chr4_2:74883070-74883089 None:intergenic 40.0%
!!! TTCACTGGTGGGTTTTTCTT+TGG + chr4_2:74883200-74883219 Msa0622450:CDS 40.0%
ATAAAGAAGGAAGTAAGCCC+AGG - chr4_2:74883243-74883262 None:intergenic 40.0%
!! ATGGAAGTACTTAGCCACTC+TGG + chr4_2:74881977-74881996 Msa0622450:five_prime_UTR 45.0%
CAGAGAGTTGTTACACACAC+TGG - chr4_2:74882016-74882035 None:intergenic 45.0%
TAGTGAAGCTGGACTTGAGT+TGG - chr4_2:74882101-74882120 None:intergenic 45.0%
TAGACCTTTGGTCACACCTA+GGG + chr4_2:74882119-74882138 Msa0622450:CDS 45.0%
TAGAAGGCAACTGATGGAGT+GGG - chr4_2:74882161-74882180 None:intergenic 45.0%
TCCATCAGTTGCCTTCTAGA+AGG + chr4_2:74882163-74882182 Msa0622450:CDS 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG + chr4_2:74882544-74882563 Msa0622450:intron 45.0%
ATGAATGGGTCACCGTTGAT+TGG - chr4_2:74882825-74882844 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG + chr4_2:74882825-74882844 Msa0622450:CDS 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG - chr4_2:74882864-74882883 None:intergenic 45.0%
!! AGAGGTACCATGCAACAAGT+GGG - chr4_2:74882878-74882897 None:intergenic 45.0%
AGTTCTGTAGCCTGGTAAGT+TGG - chr4_2:74882901-74882920 None:intergenic 45.0%
TGCAGTGAACCCACTACTTA+GGG + chr4_2:74882920-74882939 Msa0622450:CDS 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG - chr4_2:74883005-74883024 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG + chr4_2:74883005-74883024 Msa0622450:CDS 45.0%
GCTCCATCTTTGACCTTAAC+AGG + chr4_2:74883128-74883147 Msa0622450:CDS 45.0%
GAAAAACCCACCAGTGAACT+TGG - chr4_2:74883198-74883217 None:intergenic 45.0%
!!! ACTGGTGGGTTTTTCTTTGG+TGG + chr4_2:74883203-74883222 Msa0622450:CDS 45.0%
!! TGGCATTTCTGGTGTTACCT+GGG + chr4_2:74883223-74883242 Msa0622450:CDS 45.0%
!! ATGGAAGTACTTAGCCACTC+TGG + chr4_2:74881977-74881996 Msa0622450:five_prime_UTR 45.0%
CAGAGAGTTGTTACACACAC+TGG - chr4_2:74882016-74882035 None:intergenic 45.0%
TAGTGAAGCTGGACTTGAGT+TGG - chr4_2:74882101-74882120 None:intergenic 45.0%
TAGACCTTTGGTCACACCTA+GGG + chr4_2:74882119-74882138 Msa0622450:CDS 45.0%
TAGAAGGCAACTGATGGAGT+GGG - chr4_2:74882161-74882180 None:intergenic 45.0%
TCCATCAGTTGCCTTCTAGA+AGG + chr4_2:74882163-74882182 Msa0622450:CDS 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG + chr4_2:74882544-74882563 Msa0622450:intron 45.0%
ATGAATGGGTCACCGTTGAT+TGG - chr4_2:74882825-74882844 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG + chr4_2:74882825-74882844 Msa0622450:CDS 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG - chr4_2:74882864-74882883 None:intergenic 45.0%
!! AGAGGTACCATGCAACAAGT+GGG - chr4_2:74882878-74882897 None:intergenic 45.0%
AGTTCTGTAGCCTGGTAAGT+TGG - chr4_2:74882901-74882920 None:intergenic 45.0%
TGCAGTGAACCCACTACTTA+GGG + chr4_2:74882920-74882939 Msa0622450:CDS 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG - chr4_2:74883005-74883024 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG + chr4_2:74883005-74883024 Msa0622450:CDS 45.0%
GCTCCATCTTTGACCTTAAC+AGG + chr4_2:74883128-74883147 Msa0622450:CDS 45.0%
GAAAAACCCACCAGTGAACT+TGG - chr4_2:74883198-74883217 None:intergenic 45.0%
!!! ACTGGTGGGTTTTTCTTTGG+TGG + chr4_2:74883203-74883222 Msa0622450:CDS 45.0%
!! TGGCATTTCTGGTGTTACCT+GGG + chr4_2:74883223-74883242 Msa0622450:CDS 45.0%
GTTGAAATGAGGGACCAGAG+TGG - chr4_2:74881994-74882013 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG - chr4_2:74882090-74882109 None:intergenic 50.0%
GTCCAGCTTCACTAGACCTT+TGG + chr4_2:74882107-74882126 Msa0622450:CDS 50.0%
GACCAAAGGTCTAGTGAAGC+TGG - chr4_2:74882112-74882131 None:intergenic 50.0%
CTAGACCTTTGGTCACACCT+AGG + chr4_2:74882118-74882137 Msa0622450:CDS 50.0%
AGACCTTTGGTCACACCTAG+GGG + chr4_2:74882120-74882139 Msa0622450:CDS 50.0%
AGAAGGCAACTGATGGAGTG+GGG - chr4_2:74882160-74882179 None:intergenic 50.0%
CTAGAAGGCAACTGATGGAG+TGG - chr4_2:74882162-74882181 None:intergenic 50.0%
! GCCTTCTAGAAGGCAACTGA+TGG - chr4_2:74882167-74882186 None:intergenic 50.0%
! CATCAAGCCCACTTGTTGCA+TGG + chr4_2:74882868-74882887 Msa0622450:CDS 50.0%
!! GAGAGGTACCATGCAACAAG+TGG - chr4_2:74882879-74882898 None:intergenic 50.0%
TGGTACCTCTCCAACTTACC+AGG + chr4_2:74882888-74882907 Msa0622450:CDS 50.0%
! TGTAGCCTGGTAAGTTGGAG+AGG - chr4_2:74882896-74882915 None:intergenic 50.0%
TTCACTGCAGTTCTGTAGCC+TGG - chr4_2:74882909-74882928 None:intergenic 50.0%
CTGCAGTGAACCCACTACTT+AGG + chr4_2:74882919-74882938 Msa0622450:CDS 50.0%
GCAGTGAACCCACTACTTAG+GGG + chr4_2:74882921-74882940 Msa0622450:CDS 50.0%
! ATTGAAGTCGGCTTAGCCCA+TGG + chr4_2:74882945-74882964 Msa0622450:CDS 50.0%
GCCTACGAGGAAGAATCCAT+GGG - chr4_2:74882964-74882983 None:intergenic 50.0%
CGGCCTGTTAAGGTCAAAGA+TGG - chr4_2:74883134-74883153 None:intergenic 50.0%
CTGCTTCTTACGGCCTGTTA+AGG - chr4_2:74883144-74883163 None:intergenic 50.0%
! ATCAGCTGTTTGGAGCGGAT+CGG - chr4_2:74883168-74883187 None:intergenic 50.0%
CAACCATCAGCTGTTTGGAG+CGG - chr4_2:74883173-74883192 None:intergenic 50.0%
TGGACCAACCATCAGCTGTT+TGG - chr4_2:74883178-74883197 None:intergenic 50.0%
! GATGGTTGGTCCAAGTTCAC+TGG + chr4_2:74883185-74883204 Msa0622450:CDS 50.0%
GTTGGTCCAAGTTCACTGGT+GGG + chr4_2:74883189-74883208 Msa0622450:CDS 50.0%
!! GTGGCATTTCTGGTGTTACC+TGG + chr4_2:74883222-74883241 Msa0622450:CDS 50.0%
GTTGAAGTCCCTCACTTCTC+TGG - chr4_2:74881928-74881947 None:intergenic 50.0%
GTTGAAATGAGGGACCAGAG+TGG - chr4_2:74881994-74882013 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG - chr4_2:74882090-74882109 None:intergenic 50.0%
GTCCAGCTTCACTAGACCTT+TGG + chr4_2:74882107-74882126 Msa0622450:CDS 50.0%
GACCAAAGGTCTAGTGAAGC+TGG - chr4_2:74882112-74882131 None:intergenic 50.0%
CTAGACCTTTGGTCACACCT+AGG + chr4_2:74882118-74882137 Msa0622450:CDS 50.0%
AGACCTTTGGTCACACCTAG+GGG + chr4_2:74882120-74882139 Msa0622450:CDS 50.0%
AGAAGGCAACTGATGGAGTG+GGG - chr4_2:74882160-74882179 None:intergenic 50.0%
CTAGAAGGCAACTGATGGAG+TGG - chr4_2:74882162-74882181 None:intergenic 50.0%
! GCCTTCTAGAAGGCAACTGA+TGG - chr4_2:74882167-74882186 None:intergenic 50.0%
! CATCAAGCCCACTTGTTGCA+TGG + chr4_2:74882868-74882887 Msa0622450:CDS 50.0%
!! GAGAGGTACCATGCAACAAG+TGG - chr4_2:74882879-74882898 None:intergenic 50.0%
TGGTACCTCTCCAACTTACC+AGG + chr4_2:74882888-74882907 Msa0622450:CDS 50.0%
! TGTAGCCTGGTAAGTTGGAG+AGG - chr4_2:74882896-74882915 None:intergenic 50.0%
TTCACTGCAGTTCTGTAGCC+TGG - chr4_2:74882909-74882928 None:intergenic 50.0%
CTGCAGTGAACCCACTACTT+AGG + chr4_2:74882919-74882938 Msa0622450:CDS 50.0%
GCAGTGAACCCACTACTTAG+GGG + chr4_2:74882921-74882940 Msa0622450:CDS 50.0%
! ATTGAAGTCGGCTTAGCCCA+TGG + chr4_2:74882945-74882964 Msa0622450:CDS 50.0%
GCCTACGAGGAAGAATCCAT+GGG - chr4_2:74882964-74882983 None:intergenic 50.0%
CGGCCTGTTAAGGTCAAAGA+TGG - chr4_2:74883134-74883153 None:intergenic 50.0%
CTGCTTCTTACGGCCTGTTA+AGG - chr4_2:74883144-74883163 None:intergenic 50.0%
! ATCAGCTGTTTGGAGCGGAT+CGG - chr4_2:74883168-74883187 None:intergenic 50.0%
CAACCATCAGCTGTTTGGAG+CGG - chr4_2:74883173-74883192 None:intergenic 50.0%
TGGACCAACCATCAGCTGTT+TGG - chr4_2:74883178-74883197 None:intergenic 50.0%
! GATGGTTGGTCCAAGTTCAC+TGG + chr4_2:74883185-74883204 Msa0622450:CDS 50.0%
GTTGGTCCAAGTTCACTGGT+GGG + chr4_2:74883189-74883208 Msa0622450:CDS 50.0%
!! GTGGCATTTCTGGTGTTACC+TGG + chr4_2:74883222-74883241 Msa0622450:CDS 50.0%
! TCTCTGTGCTGCTCCACTTG+TGG + chr4_2:74882030-74882049 Msa0622450:five_prime_UTR 55.0%
CATGGCAGCTGCTTCTCCTA+TGG + chr4_2:74882071-74882090 Msa0622450:exon 55.0%
AGTCCCCTAGGTGTGACCAA+AGG - chr4_2:74882126-74882145 None:intergenic 55.0%
GTCACACCTAGGGGACTTTG+TGG + chr4_2:74882129-74882148 Msa0622450:CDS 55.0%
GAAGAGCCACAAAGTCCCCT+AGG - chr4_2:74882138-74882157 None:intergenic 55.0%
GCCCATGGATTCTTCCTCGT+AGG + chr4_2:74882960-74882979 Msa0622450:CDS 55.0%
GGCCTACGAGGAAGAATCCA+TGG - chr4_2:74882965-74882984 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG - chr4_2:74882977-74882996 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG + chr4_2:74882978-74882997 Msa0622450:CDS 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG + chr4_2:74882979-74882998 Msa0622450:CDS 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG - chr4_2:74882987-74883006 None:intergenic 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG + chr4_2:74882988-74883007 Msa0622450:CDS 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG - chr4_2:74883000-74883019 None:intergenic 55.0%
ACCGAATATGCCGGATCAGC+AGG + chr4_2:74883014-74883033 Msa0622450:CDS 55.0%
GCCTGCTGATCCGGCATATT+CGG - chr4_2:74883018-74883037 None:intergenic 55.0%
TGCAAGAGAGCCTGCTGATC+CGG - chr4_2:74883027-74883046 None:intergenic 55.0%
! TCAGCTGTTTGGAGCGGATC+GGG - chr4_2:74883167-74883186 None:intergenic 55.0%
GATCCGCTCCAAACAGCTGA+TGG + chr4_2:74883167-74883186 Msa0622450:CDS 55.0%
CGCTCCAAACAGCTGATGGT+TGG + chr4_2:74883171-74883190 Msa0622450:CDS 55.0%
! GGTTGGTCCAAGTTCACTGG+TGG + chr4_2:74883188-74883207 Msa0622450:CDS 55.0%
! TCTCTGTGCTGCTCCACTTG+TGG + chr4_2:74882030-74882049 Msa0622450:five_prime_UTR 55.0%
CATGGCAGCTGCTTCTCCTA+TGG + chr4_2:74882071-74882090 Msa0622450:exon 55.0%
AGTCCCCTAGGTGTGACCAA+AGG - chr4_2:74882126-74882145 None:intergenic 55.0%
GTCACACCTAGGGGACTTTG+TGG + chr4_2:74882129-74882148 Msa0622450:CDS 55.0%
GAAGAGCCACAAAGTCCCCT+AGG - chr4_2:74882138-74882157 None:intergenic 55.0%
GCCCATGGATTCTTCCTCGT+AGG + chr4_2:74882960-74882979 Msa0622450:CDS 55.0%
GGCCTACGAGGAAGAATCCA+TGG - chr4_2:74882965-74882984 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG - chr4_2:74882977-74882996 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG + chr4_2:74882978-74882997 Msa0622450:CDS 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG + chr4_2:74882979-74882998 Msa0622450:CDS 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG - chr4_2:74882987-74883006 None:intergenic 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG + chr4_2:74882988-74883007 Msa0622450:CDS 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG - chr4_2:74883000-74883019 None:intergenic 55.0%
ACCGAATATGCCGGATCAGC+AGG + chr4_2:74883014-74883033 Msa0622450:CDS 55.0%
GCCTGCTGATCCGGCATATT+CGG - chr4_2:74883018-74883037 None:intergenic 55.0%
TGCAAGAGAGCCTGCTGATC+CGG - chr4_2:74883027-74883046 None:intergenic 55.0%
! TCAGCTGTTTGGAGCGGATC+GGG - chr4_2:74883167-74883186 None:intergenic 55.0%
GATCCGCTCCAAACAGCTGA+TGG + chr4_2:74883167-74883186 Msa0622450:CDS 55.0%
CGCTCCAAACAGCTGATGGT+TGG + chr4_2:74883171-74883190 Msa0622450:CDS 55.0%
! GGTTGGTCCAAGTTCACTGG+TGG + chr4_2:74883188-74883207 Msa0622450:CDS 55.0%
! GAGGCCCGGCTTTAACGAAC+GGG - chr4_2:74882986-74883005 None:intergenic 60.0%
CAGGCTCTCTTGCAGCTGCT+GGG + chr4_2:74883033-74883052 Msa0622450:CDS 60.0%
GCGGATCGGGCTGCTTCTTA+CGG - chr4_2:74883154-74883173 None:intergenic 60.0%
! GAGGCCCGGCTTTAACGAAC+GGG - chr4_2:74882986-74883005 None:intergenic 60.0%
CAGGCTCTCTTGCAGCTGCT+GGG + chr4_2:74883033-74883052 Msa0622450:CDS 60.0%
GCGGATCGGGCTGCTTCTTA+CGG - chr4_2:74883154-74883173 None:intergenic 60.0%
GCAGGCTCTCTTGCAGCTGC+TGG + chr4_2:74883032-74883051 Msa0622450:CDS 65.0%
GCAGGCTCTCTTGCAGCTGC+TGG + chr4_2:74883032-74883051 Msa0622450:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 74881928 74883549 74881928 ID=Msa0622450;Name=Msa0622450
chr4_2 mRNA 74881928 74883549 74881928 ID=Msa0622450-mRNA-1;Parent=Msa0622450;Name=Msa0622450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=144|1|1|1|1|1|2|257|214
chr4_2 exon 74881928 74882224 74881928 ID=Msa0622450-mRNA-1:exon:22640;Parent=Msa0622450-mRNA-1
chr4_2 exon 74882801 74883549 74882801 ID=Msa0622450-mRNA-1:exon:22641;Parent=Msa0622450-mRNA-1
chr4_2 five_prime_UTR 74881928 74882071 74881928 ID=Msa0622450-mRNA-1:five_prime_utr;Parent=Msa0622450-mRNA-1
chr4_2 CDS 74882072 74882224 74882072 ID=Msa0622450-mRNA-1:cds;Parent=Msa0622450-mRNA-1
chr4_2 CDS 74882801 74883292 74882801 ID=Msa0622450-mRNA-1:cds;Parent=Msa0622450-mRNA-1
chr4_2 three_prime_UTR 74883293 74883549 74883293 ID=Msa0622450-mRNA-1:three_prime_utr;Parent=Msa0622450-mRNA-1
Gene Sequence

>Msa0622450

ATGGCAGCTGCTTCTCCTATGGCAAGCCAACTCAAGTCCAGCTTCACTAGACCTTTGGTCACACCTAGGGGACTTTGTGGCTCTTCCCCACTCCATCAGTTGCCTTCTAGAAGGCAATTTAACTTCACTGTTAAGGCAATCCAATCTGAAAAGCAAAATTACCAAGTGATTCAACCAATCAACGGTGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCACTTGTTGCATGGTACCTCTCCAACTTACCAGGCTACAGAACTGCAGTGAACCCACTACTTAGGGGAATTGAAGTCGGCTTAGCCCATGGATTCTTCCTCGTAGGCCCGTTCGTTAAAGCCGGGCCTCTAAGGAACACCGAATATGCCGGATCAGCAGGCTCTCTTGCAGCTGCTGGGCTTGTTGTTATCCTCAGCATTTGCCTTACAATCTATGGAGTTTCATCATTCAATGAAGGTGATGCATCAACTGCTCCATCTTTGACCTTAACAGGCCGTAAGAAGCAGCCCGATCCGCTCCAAACAGCTGATGGTTGGTCCAAGTTCACTGGTGGGTTTTTCTTTGGTGGCATTTCTGGTGTTACCTGGGCTTACTTCCTTCTTTATGTTTTGGATCTTCCTTACTTTGTCAAGTAA

Protein sequence

>Msa0622450

MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKQNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLVVILSICLTIYGVSSFNEGDASTAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK*