AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1068010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068010 MtrunA17_Chr7g0249261 98.131 214 4 0 1 214 1 214 1.13e-153 424
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068010 AT4G12800.1 79.358 218 39 2 2 214 3 219 2.72e-102 295
Msa1068010 AT4G12800.2 79.358 218 39 2 2 214 65 281 3.39e-102 297

Find 96 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTTCCTTCTTTATGTTT+TGG 0.217771 7_2:-63001427 Msa1068010:CDS
GCAGGCTCTCTTGCAGCTGC+TGG 0.244287 7_2:-63001642 Msa1068010:CDS
ATTTGATTGATAGTTGAAAT+TGG 0.261868 7_2:-63001154 Msa1068010:three_prime_UTR
AGCATTTGCCTTACAATCTA+TGG 0.270605 7_2:-63001603 Msa1068010:CDS
CTTGAATTTGCATTGAACTA+TGG 0.275527 7_2:-63002716 Msa1068010:five_prime_UTR
CAGGCTCTCTTGCAGCTGCT+GGG 0.294839 7_2:-63001641 Msa1068010:CDS
GCTCCATCTTTGACCTTAAC+AGG 0.301389 7_2:-63001546 Msa1068010:CDS
GCATATTCGGTGTTCCTTAG+AGG 0.320651 7_2:+63001672 None:intergenic
GTGGCATTTCTGGTGTTACC+TGG 0.330300 7_2:-63001452 Msa1068010:CDS
TCGTTAAAGCCGGGCCTCTA+AGG 0.342506 7_2:-63001686 Msa1068010:CDS
GCCTGCTGATCCGGCATATT+CGG 0.350236 7_2:+63001659 None:intergenic
TTTGTTTACTTGACAAAGTA+AGG 0.358068 7_2:+63001399 None:intergenic
GCAATTTAACTTCACTGTTA+AGG 0.363545 7_2:-63002489 Msa1068010:CDS
TCAGCTGTTTGGAGCGGATC+GGG 0.396097 7_2:+63001510 None:intergenic
TGGACCAACCATCAGCTGTT+TGG 0.398888 7_2:+63001499 None:intergenic
TGCAAGAGAGCCTGCTGATC+CGG 0.399513 7_2:+63001650 None:intergenic
CATAGTTCAATGCAAATTCA+AGG 0.412347 7_2:+63002717 None:intergenic
CAATGCAAATTCAAGGTTTG+TGG 0.412400 7_2:+63002724 None:intergenic
AAGTTAAATTGCCTTCTAGA+AGG 0.412684 7_2:+63002500 None:intergenic
ATGAAACTCCATAGATTGTA+AGG 0.413757 7_2:+63001595 None:intergenic
GTCCAGCTTCACTAGACCTT+TGG 0.414369 7_2:-63002567 Msa1068010:CDS
GTTTCAAGGCTTCCAATGAA+TGG 0.415748 7_2:+63001837 None:intergenic
TGCAGTGAACCCACTACTTA+GGG 0.418933 7_2:-63001754 Msa1068010:CDS
ACAAGTGGGCTTGATGTAAC+TGG 0.422772 7_2:+63001813 None:intergenic
GTCACACCTAGGGGACTTTG+TGG 0.427623 7_2:-63002545 Msa1068010:CDS
CTGCTTCTTACGGCCTGTTA+AGG 0.438239 7_2:+63001533 None:intergenic
TCCATCAGTTGCCTTCTAGA+AGG 0.443118 7_2:-63002511 Msa1068010:CDS
ACCGAATATGCCGGATCAGC+AGG 0.445265 7_2:-63001660 Msa1068010:CDS
GAGGCCCGGCTTTAACGAAC+GGG 0.446312 7_2:+63001691 None:intergenic
TTTGTGTGCTAATGAGATAA+TGG 0.449976 7_2:-63001345 Msa1068010:three_prime_UTR
CTGCAGTGAACCCACTACTT+AGG 0.453704 7_2:-63001755 Msa1068010:CDS
ATCAACGGTGACCCATTCAT+TGG 0.455192 7_2:-63001849 Msa1068010:CDS
CATGGCAGCTGCTTCTCCTA+TGG 0.458111 7_2:-63002603 Msa1068010:CDS
TTCACTGCAGTTCTGTAGCC+TGG 0.467820 7_2:+63001768 None:intergenic
CGTTGATTGGTTGAATCACT+TGG 0.469160 7_2:+63001865 None:intergenic
GCGGATCGGGCTGCTTCTTA+CGG 0.470007 7_2:+63001523 None:intergenic
TTCGGTGTTCCTTAGAGGCC+CGG 0.471580 7_2:+63001677 None:intergenic
TTTCAAGGCTTCCAATGAAT+GGG 0.476089 7_2:+63001838 None:intergenic
ATGAATGGGTCACCGTTGAT+TGG 0.494570 7_2:+63001852 None:intergenic
AGTTCTGTTGATTCCACAAG+TGG 0.497526 7_2:+63002631 None:intergenic
GGAGTTTCATCATTCAATGA+AGG 0.498940 7_2:-63001582 Msa1068010:CDS
GTAGGCCCGTTCGTTAAAGC+CGG 0.500427 7_2:-63001696 Msa1068010:CDS
CATCAAGCCCACTTGTTGCA+TGG 0.506359 7_2:-63001806 Msa1068010:CDS
TCTCTGTGCTGCTCCACTTG+TGG 0.508713 7_2:-63002644 Msa1068010:five_prime_UTR
CGGCCTGTTAAGGTCAAAGA+TGG 0.509120 7_2:+63001543 None:intergenic
GACCAAAGGTCTAGTGAAGC+TGG 0.510695 7_2:+63002565 None:intergenic
GATGGTTGGTCCAAGTTCAC+TGG 0.512448 7_2:-63001489 Msa1068010:CDS
TGGCATTTCTGGTGTTACCT+GGG 0.515577 7_2:-63001451 Msa1068010:CDS
TAAGGCAATCCAATCTGAAA+AGG 0.518673 7_2:-63002471 Msa1068010:intron
TAGTGAAGCTGGACTTGAGT+TGG 0.519806 7_2:+63002576 None:intergenic
TACACACACTGGTTGAAATG+AGG 0.519894 7_2:+63002672 None:intergenic
TTGATGTAACTGGAGTTTCA+AGG 0.522174 7_2:+63001823 None:intergenic
GGCCTACGAGGAAGAATCCA+TGG 0.522700 7_2:+63001712 None:intergenic
TAGACCTTTGGTCACACCTA+GGG 0.524311 7_2:-63002555 Msa1068010:CDS
GACTTGAGTTGGCTTGCCAT+AGG 0.524629 7_2:+63002587 None:intergenic
GAAGATCCAAAACATAAAGA+AGG 0.530701 7_2:+63001421 None:intergenic
TAGAAGGCAACTGATGGAGT+GGG 0.531155 7_2:+63002516 None:intergenic
TGGTACCTCTCCAACTTACC+AGG 0.533263 7_2:-63001786 Msa1068010:CDS
TAGGCCCGTTCGTTAAAGCC+GGG 0.536476 7_2:-63001695 Msa1068010:CDS
CGCTCCAAACAGCTGATGGT+TGG 0.542041 7_2:-63001503 Msa1068010:CDS
ATAAAGAAGGAAGTAAGCCC+AGG 0.543130 7_2:+63001434 None:intergenic
GTTGGTCCAAGTTCACTGGT+GGG 0.544476 7_2:-63001485 Msa1068010:CDS
ATTGAAGTCGGCTTAGCCCA+TGG 0.544487 7_2:-63001729 Msa1068010:CDS
ATCAGCTGTTTGGAGCGGAT+CGG 0.546589 7_2:+63001509 None:intergenic
CTAAGGAACACCGAATATGC+CGG 0.551083 7_2:-63001669 Msa1068010:CDS
GCCTTCTAGAAGGCAACTGA+TGG 0.551586 7_2:+63002510 None:intergenic
CTTCAATTCCCCTAAGTAGT+GGG 0.556813 7_2:+63001745 None:intergenic
AGAGGCCCGGCTTTAACGAA+CGG 0.558183 7_2:+63001690 None:intergenic
GATCCGCTCCAAACAGCTGA+TGG 0.563858 7_2:-63001507 Msa1068010:CDS
GGTTGGTCCAAGTTCACTGG+TGG 0.565191 7_2:-63001486 Msa1068010:CDS
AGTTCTGTAGCCTGGTAAGT+TGG 0.565590 7_2:+63001776 None:intergenic
CTACTTAGGGGAATTGAAGT+CGG 0.568063 7_2:-63001741 Msa1068010:CDS
ACTTCAATTCCCCTAAGTAG+TGG 0.569195 7_2:+63001744 None:intergenic
ACACACACTGGTTGAAATGA+GGG 0.573827 7_2:+63002673 None:intergenic
CAGAGAGTTGTTACACACAC+TGG 0.590670 7_2:+63002661 None:intergenic
GAAGAGCCACAAAGTCCCCT+AGG 0.592421 7_2:+63002539 None:intergenic
CTAGACCTTTGGTCACACCT+AGG 0.596879 7_2:-63002556 Msa1068010:CDS
GAGAGGTACCATGCAACAAG+TGG 0.599829 7_2:+63001798 None:intergenic
CTAGAAGGCAACTGATGGAG+TGG 0.603613 7_2:+63002515 None:intergenic
ATGGAAGTACTTAGCCACTC+TGG 0.608137 7_2:-63002697 Msa1068010:five_prime_UTR
TATCAGCCAATGAGAAGTGA+GGG 0.611980 7_2:-63002757 None:intergenic
GCCCATGGATTCTTCCTCGT+AGG 0.621168 7_2:-63001714 Msa1068010:CDS
AATCAACAGAACTTAAGTCA+TGG 0.622961 7_2:-63002621 Msa1068010:exon
TGTAGCCTGGTAAGTTGGAG+AGG 0.625193 7_2:+63001781 None:intergenic
GCCTACGAGGAAGAATCCAT+GGG 0.633522 7_2:+63001713 None:intergenic
CTTTAACGAACGGGCCTACG+AGG 0.656397 7_2:+63001700 None:intergenic
CAACCATCAGCTGTTTGGAG+CGG 0.658464 7_2:+63001504 None:intergenic
ATATCAGCCAATGAGAAGTG+AGG 0.663341 7_2:-63002758 None:intergenic
AGACCTTTGGTCACACCTAG+GGG 0.664459 7_2:-63002554 Msa1068010:CDS
AGATTGTAAGGCAAATGCTG+AGG 0.667416 7_2:+63001607 None:intergenic
GCAGTGAACCCACTACTTAG+GGG 0.670055 7_2:-63001753 Msa1068010:CDS
AGAAGGCAACTGATGGAGTG+GGG 0.675058 7_2:+63002517 None:intergenic
CAAGTGATTCAACCAATCAA+CGG 0.677130 7_2:-63001864 Msa1068010:CDS
AGAGGTACCATGCAACAAGT+GGG 0.679084 7_2:+63001799 None:intergenic
AGTCCCCTAGGTGTGACCAA+AGG 0.679971 7_2:+63002551 None:intergenic
GTTGAAATGAGGGACCAGAG+TGG 0.760347 7_2:+63002683 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAACTAACTATATAAA+GGG + chr7_2:63001580-63001599 None:intergenic 15.0%
!! AAACATAACTAACTATATAA+AGG + chr7_2:63001581-63001600 None:intergenic 15.0%
!! TTGAATTATGTAAAAATTGA+TGG - chr7_2:63002666-63002685 Msa1068010:five_prime_UTR 15.0%
!! AACATAACTAACTATATAAA+GGG + chr7_2:63001580-63001599 None:intergenic 15.0%
!! AAACATAACTAACTATATAA+AGG + chr7_2:63001581-63001600 None:intergenic 15.0%
!! TTGAATTATGTAAAAATTGA+TGG - chr7_2:63002666-63002685 Msa1068010:five_prime_UTR 15.0%
!!! TTGCTAATGTATTTTAACTA+TGG + chr7_2:63001532-63001551 None:intergenic 20.0%
!! AACATGTTCATTATTTAAAG+TGG - chr7_2:63001685-63001704 Msa1068010:CDS 20.0%
!! TATATATATGTTCATTGCTT+AGG - chr7_2:63001728-63001747 Msa1068010:CDS 20.0%
!! GTTCATTTCTATAATTGAAT+AGG - chr7_2:63001891-63001910 Msa1068010:intron 20.0%
!! ATTGAGTCATTTATTTCAAT+TGG - chr7_2:63001979-63001998 Msa1068010:intron 20.0%
!! TATGTAAAAATTGATGGAAA+TGG - chr7_2:63002672-63002691 Msa1068010:five_prime_UTR 20.0%
!!! ATTTGATTGATAGTTGAAAT+TGG - chr7_2:63002739-63002758 Msa1068010:five_prime_UTR 20.0%
!!! TTGCTAATGTATTTTAACTA+TGG + chr7_2:63001532-63001551 None:intergenic 20.0%
!! AACATGTTCATTATTTAAAG+TGG - chr7_2:63001685-63001704 Msa1068010:CDS 20.0%
!! TATATATATGTTCATTGCTT+AGG - chr7_2:63001728-63001747 Msa1068010:CDS 20.0%
!! GTTCATTTCTATAATTGAAT+AGG - chr7_2:63001891-63001910 Msa1068010:intron 20.0%
!! ATTGAGTCATTTATTTCAAT+TGG - chr7_2:63001979-63001998 Msa1068010:intron 20.0%
!! TATGTAAAAATTGATGGAAA+TGG - chr7_2:63002672-63002691 Msa1068010:five_prime_UTR 20.0%
!!! ATTTGATTGATAGTTGAAAT+TGG - chr7_2:63002739-63002758 Msa1068010:five_prime_UTR 20.0%
!! TAAACAAAGAGAGTATACAT+AGG + chr7_2:63001468-63001487 None:intergenic 25.0%
!! GCTTTTGTTAAAGTTGTTAT+AGG + chr7_2:63001948-63001967 None:intergenic 25.0%
! GAAATAAATGACTCAATTTC+AGG + chr7_2:63001976-63001995 None:intergenic 25.0%
!! TTACTTCCTTCTTTATGTTT+TGG - chr7_2:63002466-63002485 Msa1068010:intron 25.0%
! TTTGTTTACTTGACAAAGTA+AGG + chr7_2:63002497-63002516 None:intergenic 25.0%
!! TAAACAAAGAGAGTATACAT+AGG + chr7_2:63001468-63001487 None:intergenic 25.0%
!! GCTTTTGTTAAAGTTGTTAT+AGG + chr7_2:63001948-63001967 None:intergenic 25.0%
! GAAATAAATGACTCAATTTC+AGG + chr7_2:63001976-63001995 None:intergenic 25.0%
!! TTACTTCCTTCTTTATGTTT+TGG - chr7_2:63002466-63002485 Msa1068010:intron 25.0%
! TTTGTTTACTTGACAAAGTA+AGG + chr7_2:63002497-63002516 None:intergenic 25.0%
CATAGTTCAATGCAAATTCA+AGG + chr7_2:63001179-63001198 None:intergenic 30.0%
CTTGAATTTGCATTGAACTA+TGG - chr7_2:63001177-63001196 Msa1068010:three_prime_UTR 30.0%
AATCAACAGAACTTAAGTCA+TGG - chr7_2:63001272-63001291 Msa1068010:three_prime_UTR 30.0%
AAGTTAAATTGCCTTCTAGA+AGG + chr7_2:63001396-63001415 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG - chr7_2:63001404-63001423 Msa1068010:CDS 30.0%
! AGAGAGTATACATAGGTAAT+AGG + chr7_2:63001461-63001480 None:intergenic 30.0%
!! AGATAAAGTGGACTAGATTA+TGG + chr7_2:63001503-63001522 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG + chr7_2:63001515-63001534 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG + chr7_2:63001623-63001642 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG - chr7_2:63001732-63001751 Msa1068010:CDS 30.0%
!! TGTGTAATTTGTTCATCACT+TGG - chr7_2:63001819-63001838 Msa1068010:CDS 30.0%
ATGAAACTCCATAGATTGTA+AGG + chr7_2:63002301-63002320 None:intergenic 30.0%
GAAGATCCAAAACATAAAGA+AGG + chr7_2:63002475-63002494 None:intergenic 30.0%
TTTGTGTGCTAATGAGATAA+TGG - chr7_2:63002548-63002567 Msa1068010:CDS 30.0%
CATAGTTCAATGCAAATTCA+AGG + chr7_2:63001179-63001198 None:intergenic 30.0%
CTTGAATTTGCATTGAACTA+TGG - chr7_2:63001177-63001196 Msa1068010:three_prime_UTR 30.0%
AATCAACAGAACTTAAGTCA+TGG - chr7_2:63001272-63001291 Msa1068010:three_prime_UTR 30.0%
AAGTTAAATTGCCTTCTAGA+AGG + chr7_2:63001396-63001415 None:intergenic 30.0%
! GCAATTTAACTTCACTGTTA+AGG - chr7_2:63001404-63001423 Msa1068010:CDS 30.0%
! AGAGAGTATACATAGGTAAT+AGG + chr7_2:63001461-63001480 None:intergenic 30.0%
!! AGATAAAGTGGACTAGATTA+TGG + chr7_2:63001503-63001522 None:intergenic 30.0%
CTATGGTATGATAGATAAAG+TGG + chr7_2:63001515-63001534 None:intergenic 30.0%
CAGAAGCAATTCATGAATTA+AGG + chr7_2:63001623-63001642 None:intergenic 30.0%
TATATGTTCATTGCTTAGGT+TGG - chr7_2:63001732-63001751 Msa1068010:CDS 30.0%
!! TGTGTAATTTGTTCATCACT+TGG - chr7_2:63001819-63001838 Msa1068010:CDS 30.0%
ATGAAACTCCATAGATTGTA+AGG + chr7_2:63002301-63002320 None:intergenic 30.0%
GAAGATCCAAAACATAAAGA+AGG + chr7_2:63002475-63002494 None:intergenic 30.0%
TTTGTGTGCTAATGAGATAA+TGG - chr7_2:63002548-63002567 Msa1068010:CDS 30.0%
CAATGCAAATTCAAGGTTTG+TGG + chr7_2:63001172-63001191 None:intergenic 35.0%
TAAGGCAATCCAATCTGAAA+AGG - chr7_2:63001422-63001441 Msa1068010:CDS 35.0%
! AGTAGCATACCTTTTCAGAT+TGG + chr7_2:63001434-63001453 None:intergenic 35.0%
GAGTATACATAGGTAATAGG+AGG + chr7_2:63001458-63001477 None:intergenic 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG - chr7_2:63001746-63001765 Msa1068010:CDS 35.0%
CCTATGACAGTAGTCAAAAA+CGG - chr7_2:63001844-63001863 Msa1068010:CDS 35.0%
! TGGTAATTTTGCTGCAACAA+TGG + chr7_2:63002011-63002030 None:intergenic 35.0%
CAAGTGATTCAACCAATCAA+CGG - chr7_2:63002029-63002048 Msa1068010:intron 35.0%
TTTCAAGGCTTCCAATGAAT+GGG + chr7_2:63002058-63002077 None:intergenic 35.0%
TTGATGTAACTGGAGTTTCA+AGG + chr7_2:63002073-63002092 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG - chr7_2:63002290-63002309 Msa1068010:intron 35.0%
GGAGTTTCATCATTCAATGA+AGG - chr7_2:63002311-63002330 Msa1068010:intron 35.0%
!! TTTTTCTTTGGTGGCATTTC+TGG - chr7_2:63002431-63002450 Msa1068010:intron 35.0%
CAATGCAAATTCAAGGTTTG+TGG + chr7_2:63001172-63001191 None:intergenic 35.0%
TAAGGCAATCCAATCTGAAA+AGG - chr7_2:63001422-63001441 Msa1068010:CDS 35.0%
! AGTAGCATACCTTTTCAGAT+TGG + chr7_2:63001434-63001453 None:intergenic 35.0%
GAGTATACATAGGTAATAGG+AGG + chr7_2:63001458-63001477 None:intergenic 35.0%
!! TTAGGTTGGTTTGAGTAGTA+AGG - chr7_2:63001746-63001765 Msa1068010:CDS 35.0%
CCTATGACAGTAGTCAAAAA+CGG - chr7_2:63001844-63001863 Msa1068010:CDS 35.0%
! TGGTAATTTTGCTGCAACAA+TGG + chr7_2:63002011-63002030 None:intergenic 35.0%
CAAGTGATTCAACCAATCAA+CGG - chr7_2:63002029-63002048 Msa1068010:intron 35.0%
TTTCAAGGCTTCCAATGAAT+GGG + chr7_2:63002058-63002077 None:intergenic 35.0%
TTGATGTAACTGGAGTTTCA+AGG + chr7_2:63002073-63002092 None:intergenic 35.0%
AGCATTTGCCTTACAATCTA+TGG - chr7_2:63002290-63002309 Msa1068010:intron 35.0%
GGAGTTTCATCATTCAATGA+AGG - chr7_2:63002311-63002330 Msa1068010:intron 35.0%
!! TTTTTCTTTGGTGGCATTTC+TGG - chr7_2:63002431-63002450 Msa1068010:intron 35.0%
! ACACACACTGGTTGAAATGA+GGG + chr7_2:63001223-63001242 None:intergenic 40.0%
! TACACACACTGGTTGAAATG+AGG + chr7_2:63001224-63001243 None:intergenic 40.0%
!! AGTTCTGTTGATTCCACAAG+TGG + chr7_2:63001265-63001284 None:intergenic 40.0%
!! CCGTTTTTGACTACTGTCAT+AGG + chr7_2:63001847-63001866 None:intergenic 40.0%
! CGTTGATTGGTTGAATCACT+TGG + chr7_2:63002031-63002050 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG + chr7_2:63002059-63002078 None:intergenic 40.0%
CTTCAATTCCCCTAAGTAGT+GGG + chr7_2:63002151-63002170 None:intergenic 40.0%
ACTTCAATTCCCCTAAGTAG+TGG + chr7_2:63002152-63002171 None:intergenic 40.0%
CTACTTAGGGGAATTGAAGT+CGG - chr7_2:63002152-63002171 Msa1068010:intron 40.0%
AGATTGTAAGGCAAATGCTG+AGG + chr7_2:63002289-63002308 None:intergenic 40.0%
!!! TTCACTGGTGGGTTTTTCTT+TGG - chr7_2:63002419-63002438 Msa1068010:intron 40.0%
ATAAAGAAGGAAGTAAGCCC+AGG + chr7_2:63002462-63002481 None:intergenic 40.0%
! ACACACACTGGTTGAAATGA+GGG + chr7_2:63001223-63001242 None:intergenic 40.0%
! TACACACACTGGTTGAAATG+AGG + chr7_2:63001224-63001243 None:intergenic 40.0%
!! AGTTCTGTTGATTCCACAAG+TGG + chr7_2:63001265-63001284 None:intergenic 40.0%
!! CCGTTTTTGACTACTGTCAT+AGG + chr7_2:63001847-63001866 None:intergenic 40.0%
! CGTTGATTGGTTGAATCACT+TGG + chr7_2:63002031-63002050 None:intergenic 40.0%
GTTTCAAGGCTTCCAATGAA+TGG + chr7_2:63002059-63002078 None:intergenic 40.0%
CTTCAATTCCCCTAAGTAGT+GGG + chr7_2:63002151-63002170 None:intergenic 40.0%
ACTTCAATTCCCCTAAGTAG+TGG + chr7_2:63002152-63002171 None:intergenic 40.0%
CTACTTAGGGGAATTGAAGT+CGG - chr7_2:63002152-63002171 Msa1068010:intron 40.0%
AGATTGTAAGGCAAATGCTG+AGG + chr7_2:63002289-63002308 None:intergenic 40.0%
!!! TTCACTGGTGGGTTTTTCTT+TGG - chr7_2:63002419-63002438 Msa1068010:intron 40.0%
ATAAAGAAGGAAGTAAGCCC+AGG + chr7_2:63002462-63002481 None:intergenic 40.0%
!! ATGGAAGTACTTAGCCACTC+TGG - chr7_2:63001196-63001215 Msa1068010:three_prime_UTR 45.0%
CAGAGAGTTGTTACACACAC+TGG + chr7_2:63001235-63001254 None:intergenic 45.0%
TAGTGAAGCTGGACTTGAGT+TGG + chr7_2:63001320-63001339 None:intergenic 45.0%
TAGACCTTTGGTCACACCTA+GGG - chr7_2:63001338-63001357 Msa1068010:three_prime_UTR 45.0%
TAGAAGGCAACTGATGGAGT+GGG + chr7_2:63001380-63001399 None:intergenic 45.0%
TCCATCAGTTGCCTTCTAGA+AGG - chr7_2:63001382-63001401 Msa1068010:three_prime_UTR 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG - chr7_2:63001763-63001782 Msa1068010:CDS 45.0%
ATGAATGGGTCACCGTTGAT+TGG + chr7_2:63002044-63002063 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG - chr7_2:63002044-63002063 Msa1068010:intron 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG + chr7_2:63002083-63002102 None:intergenic 45.0%
!! AGAGGTACCATGCAACAAGT+GGG + chr7_2:63002097-63002116 None:intergenic 45.0%
AGTTCTGTAGCCTGGTAAGT+TGG + chr7_2:63002120-63002139 None:intergenic 45.0%
TGCAGTGAACCCACTACTTA+GGG - chr7_2:63002139-63002158 Msa1068010:intron 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG + chr7_2:63002224-63002243 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG - chr7_2:63002224-63002243 Msa1068010:intron 45.0%
GCTCCATCTTTGACCTTAAC+AGG - chr7_2:63002347-63002366 Msa1068010:intron 45.0%
GAAAAACCCACCAGTGAACT+TGG + chr7_2:63002417-63002436 None:intergenic 45.0%
!!! ACTGGTGGGTTTTTCTTTGG+TGG - chr7_2:63002422-63002441 Msa1068010:intron 45.0%
!! TGGCATTTCTGGTGTTACCT+GGG - chr7_2:63002442-63002461 Msa1068010:intron 45.0%
!! ATGGAAGTACTTAGCCACTC+TGG - chr7_2:63001196-63001215 Msa1068010:three_prime_UTR 45.0%
CAGAGAGTTGTTACACACAC+TGG + chr7_2:63001235-63001254 None:intergenic 45.0%
TAGTGAAGCTGGACTTGAGT+TGG + chr7_2:63001320-63001339 None:intergenic 45.0%
TAGACCTTTGGTCACACCTA+GGG - chr7_2:63001338-63001357 Msa1068010:three_prime_UTR 45.0%
TAGAAGGCAACTGATGGAGT+GGG + chr7_2:63001380-63001399 None:intergenic 45.0%
TCCATCAGTTGCCTTCTAGA+AGG - chr7_2:63001382-63001401 Msa1068010:three_prime_UTR 45.0%
! GTAAGGCTAGCTAAGTGATC+AGG - chr7_2:63001763-63001782 Msa1068010:CDS 45.0%
ATGAATGGGTCACCGTTGAT+TGG + chr7_2:63002044-63002063 None:intergenic 45.0%
ATCAACGGTGACCCATTCAT+TGG - chr7_2:63002044-63002063 Msa1068010:intron 45.0%
! ACAAGTGGGCTTGATGTAAC+TGG + chr7_2:63002083-63002102 None:intergenic 45.0%
!! AGAGGTACCATGCAACAAGT+GGG + chr7_2:63002097-63002116 None:intergenic 45.0%
AGTTCTGTAGCCTGGTAAGT+TGG + chr7_2:63002120-63002139 None:intergenic 45.0%
TGCAGTGAACCCACTACTTA+GGG - chr7_2:63002139-63002158 Msa1068010:intron 45.0%
!! GCATATTCGGTGTTCCTTAG+AGG + chr7_2:63002224-63002243 None:intergenic 45.0%
CTAAGGAACACCGAATATGC+CGG - chr7_2:63002224-63002243 Msa1068010:intron 45.0%
GCTCCATCTTTGACCTTAAC+AGG - chr7_2:63002347-63002366 Msa1068010:intron 45.0%
GAAAAACCCACCAGTGAACT+TGG + chr7_2:63002417-63002436 None:intergenic 45.0%
!!! ACTGGTGGGTTTTTCTTTGG+TGG - chr7_2:63002422-63002441 Msa1068010:intron 45.0%
!! TGGCATTTCTGGTGTTACCT+GGG - chr7_2:63002442-63002461 Msa1068010:intron 45.0%
GTTGAAATGAGGGACCAGAG+TGG + chr7_2:63001213-63001232 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG + chr7_2:63001309-63001328 None:intergenic 50.0%
GTCCAGCTTCACTAGACCTT+TGG - chr7_2:63001326-63001345 Msa1068010:three_prime_UTR 50.0%
GACCAAAGGTCTAGTGAAGC+TGG + chr7_2:63001331-63001350 None:intergenic 50.0%
CTAGACCTTTGGTCACACCT+AGG - chr7_2:63001337-63001356 Msa1068010:three_prime_UTR 50.0%
AGACCTTTGGTCACACCTAG+GGG - chr7_2:63001339-63001358 Msa1068010:three_prime_UTR 50.0%
AGAAGGCAACTGATGGAGTG+GGG + chr7_2:63001379-63001398 None:intergenic 50.0%
CTAGAAGGCAACTGATGGAG+TGG + chr7_2:63001381-63001400 None:intergenic 50.0%
! GCCTTCTAGAAGGCAACTGA+TGG + chr7_2:63001386-63001405 None:intergenic 50.0%
! CATCAAGCCCACTTGTTGCA+TGG - chr7_2:63002087-63002106 Msa1068010:intron 50.0%
!! GAGAGGTACCATGCAACAAG+TGG + chr7_2:63002098-63002117 None:intergenic 50.0%
TGGTACCTCTCCAACTTACC+AGG - chr7_2:63002107-63002126 Msa1068010:intron 50.0%
! TGTAGCCTGGTAAGTTGGAG+AGG + chr7_2:63002115-63002134 None:intergenic 50.0%
TTCACTGCAGTTCTGTAGCC+TGG + chr7_2:63002128-63002147 None:intergenic 50.0%
CTGCAGTGAACCCACTACTT+AGG - chr7_2:63002138-63002157 Msa1068010:intron 50.0%
GCAGTGAACCCACTACTTAG+GGG - chr7_2:63002140-63002159 Msa1068010:intron 50.0%
! ATTGAAGTCGGCTTAGCCCA+TGG - chr7_2:63002164-63002183 Msa1068010:intron 50.0%
GCCTACGAGGAAGAATCCAT+GGG + chr7_2:63002183-63002202 None:intergenic 50.0%
CGGCCTGTTAAGGTCAAAGA+TGG + chr7_2:63002353-63002372 None:intergenic 50.0%
CTGCTTCTTACGGCCTGTTA+AGG + chr7_2:63002363-63002382 None:intergenic 50.0%
! ATCAGCTGTTTGGAGCGGAT+CGG + chr7_2:63002387-63002406 None:intergenic 50.0%
CAACCATCAGCTGTTTGGAG+CGG + chr7_2:63002392-63002411 None:intergenic 50.0%
TGGACCAACCATCAGCTGTT+TGG + chr7_2:63002397-63002416 None:intergenic 50.0%
! GATGGTTGGTCCAAGTTCAC+TGG - chr7_2:63002404-63002423 Msa1068010:intron 50.0%
GTTGGTCCAAGTTCACTGGT+GGG - chr7_2:63002408-63002427 Msa1068010:intron 50.0%
!! GTGGCATTTCTGGTGTTACC+TGG - chr7_2:63002441-63002460 Msa1068010:intron 50.0%
GTTGAAGTCCCTCACTTCTC+TGG + chr7_2:63001147-63001166 None:intergenic 50.0%
GTTGAAATGAGGGACCAGAG+TGG + chr7_2:63001213-63001232 None:intergenic 50.0%
!! GACTTGAGTTGGCTTGCCAT+AGG + chr7_2:63001309-63001328 None:intergenic 50.0%
GTCCAGCTTCACTAGACCTT+TGG - chr7_2:63001326-63001345 Msa1068010:three_prime_UTR 50.0%
GACCAAAGGTCTAGTGAAGC+TGG + chr7_2:63001331-63001350 None:intergenic 50.0%
CTAGACCTTTGGTCACACCT+AGG - chr7_2:63001337-63001356 Msa1068010:three_prime_UTR 50.0%
AGACCTTTGGTCACACCTAG+GGG - chr7_2:63001339-63001358 Msa1068010:three_prime_UTR 50.0%
AGAAGGCAACTGATGGAGTG+GGG + chr7_2:63001379-63001398 None:intergenic 50.0%
CTAGAAGGCAACTGATGGAG+TGG + chr7_2:63001381-63001400 None:intergenic 50.0%
! GCCTTCTAGAAGGCAACTGA+TGG + chr7_2:63001386-63001405 None:intergenic 50.0%
! CATCAAGCCCACTTGTTGCA+TGG - chr7_2:63002087-63002106 Msa1068010:intron 50.0%
!! GAGAGGTACCATGCAACAAG+TGG + chr7_2:63002098-63002117 None:intergenic 50.0%
TGGTACCTCTCCAACTTACC+AGG - chr7_2:63002107-63002126 Msa1068010:intron 50.0%
! TGTAGCCTGGTAAGTTGGAG+AGG + chr7_2:63002115-63002134 None:intergenic 50.0%
TTCACTGCAGTTCTGTAGCC+TGG + chr7_2:63002128-63002147 None:intergenic 50.0%
CTGCAGTGAACCCACTACTT+AGG - chr7_2:63002138-63002157 Msa1068010:intron 50.0%
GCAGTGAACCCACTACTTAG+GGG - chr7_2:63002140-63002159 Msa1068010:intron 50.0%
! ATTGAAGTCGGCTTAGCCCA+TGG - chr7_2:63002164-63002183 Msa1068010:intron 50.0%
GCCTACGAGGAAGAATCCAT+GGG + chr7_2:63002183-63002202 None:intergenic 50.0%
CGGCCTGTTAAGGTCAAAGA+TGG + chr7_2:63002353-63002372 None:intergenic 50.0%
CTGCTTCTTACGGCCTGTTA+AGG + chr7_2:63002363-63002382 None:intergenic 50.0%
! ATCAGCTGTTTGGAGCGGAT+CGG + chr7_2:63002387-63002406 None:intergenic 50.0%
CAACCATCAGCTGTTTGGAG+CGG + chr7_2:63002392-63002411 None:intergenic 50.0%
TGGACCAACCATCAGCTGTT+TGG + chr7_2:63002397-63002416 None:intergenic 50.0%
! GATGGTTGGTCCAAGTTCAC+TGG - chr7_2:63002404-63002423 Msa1068010:intron 50.0%
GTTGGTCCAAGTTCACTGGT+GGG - chr7_2:63002408-63002427 Msa1068010:intron 50.0%
!! GTGGCATTTCTGGTGTTACC+TGG - chr7_2:63002441-63002460 Msa1068010:intron 50.0%
! TCTCTGTGCTGCTCCACTTG+TGG - chr7_2:63001249-63001268 Msa1068010:three_prime_UTR 55.0%
CATGGCAGCTGCTTCTCCTA+TGG - chr7_2:63001290-63001309 Msa1068010:three_prime_UTR 55.0%
AGTCCCCTAGGTGTGACCAA+AGG + chr7_2:63001345-63001364 None:intergenic 55.0%
GTCACACCTAGGGGACTTTG+TGG - chr7_2:63001348-63001367 Msa1068010:three_prime_UTR 55.0%
GAAGAGCCACAAAGTCCCCT+AGG + chr7_2:63001357-63001376 None:intergenic 55.0%
GCCCATGGATTCTTCCTCGT+AGG - chr7_2:63002179-63002198 Msa1068010:intron 55.0%
GGCCTACGAGGAAGAATCCA+TGG + chr7_2:63002184-63002203 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG + chr7_2:63002196-63002215 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG - chr7_2:63002197-63002216 Msa1068010:intron 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG - chr7_2:63002198-63002217 Msa1068010:intron 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG + chr7_2:63002206-63002225 None:intergenic 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG - chr7_2:63002207-63002226 Msa1068010:intron 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG + chr7_2:63002219-63002238 None:intergenic 55.0%
ACCGAATATGCCGGATCAGC+AGG - chr7_2:63002233-63002252 Msa1068010:intron 55.0%
GCCTGCTGATCCGGCATATT+CGG + chr7_2:63002237-63002256 None:intergenic 55.0%
TGCAAGAGAGCCTGCTGATC+CGG + chr7_2:63002246-63002265 None:intergenic 55.0%
! TCAGCTGTTTGGAGCGGATC+GGG + chr7_2:63002386-63002405 None:intergenic 55.0%
GATCCGCTCCAAACAGCTGA+TGG - chr7_2:63002386-63002405 Msa1068010:intron 55.0%
CGCTCCAAACAGCTGATGGT+TGG - chr7_2:63002390-63002409 Msa1068010:intron 55.0%
! GGTTGGTCCAAGTTCACTGG+TGG - chr7_2:63002407-63002426 Msa1068010:intron 55.0%
! TCTCTGTGCTGCTCCACTTG+TGG - chr7_2:63001249-63001268 Msa1068010:three_prime_UTR 55.0%
CATGGCAGCTGCTTCTCCTA+TGG - chr7_2:63001290-63001309 Msa1068010:three_prime_UTR 55.0%
AGTCCCCTAGGTGTGACCAA+AGG + chr7_2:63001345-63001364 None:intergenic 55.0%
GTCACACCTAGGGGACTTTG+TGG - chr7_2:63001348-63001367 Msa1068010:three_prime_UTR 55.0%
GAAGAGCCACAAAGTCCCCT+AGG + chr7_2:63001357-63001376 None:intergenic 55.0%
GCCCATGGATTCTTCCTCGT+AGG - chr7_2:63002179-63002198 Msa1068010:intron 55.0%
GGCCTACGAGGAAGAATCCA+TGG + chr7_2:63002184-63002203 None:intergenic 55.0%
CTTTAACGAACGGGCCTACG+AGG + chr7_2:63002196-63002215 None:intergenic 55.0%
GTAGGCCCGTTCGTTAAAGC+CGG - chr7_2:63002197-63002216 Msa1068010:intron 55.0%
TAGGCCCGTTCGTTAAAGCC+GGG - chr7_2:63002198-63002217 Msa1068010:intron 55.0%
! AGAGGCCCGGCTTTAACGAA+CGG + chr7_2:63002206-63002225 None:intergenic 55.0%
TCGTTAAAGCCGGGCCTCTA+AGG - chr7_2:63002207-63002226 Msa1068010:intron 55.0%
!! TTCGGTGTTCCTTAGAGGCC+CGG + chr7_2:63002219-63002238 None:intergenic 55.0%
ACCGAATATGCCGGATCAGC+AGG - chr7_2:63002233-63002252 Msa1068010:intron 55.0%
GCCTGCTGATCCGGCATATT+CGG + chr7_2:63002237-63002256 None:intergenic 55.0%
TGCAAGAGAGCCTGCTGATC+CGG + chr7_2:63002246-63002265 None:intergenic 55.0%
! TCAGCTGTTTGGAGCGGATC+GGG + chr7_2:63002386-63002405 None:intergenic 55.0%
GATCCGCTCCAAACAGCTGA+TGG - chr7_2:63002386-63002405 Msa1068010:intron 55.0%
CGCTCCAAACAGCTGATGGT+TGG - chr7_2:63002390-63002409 Msa1068010:intron 55.0%
! GGTTGGTCCAAGTTCACTGG+TGG - chr7_2:63002407-63002426 Msa1068010:intron 55.0%
! GAGGCCCGGCTTTAACGAAC+GGG + chr7_2:63002205-63002224 None:intergenic 60.0%
CAGGCTCTCTTGCAGCTGCT+GGG - chr7_2:63002252-63002271 Msa1068010:intron 60.0%
GCGGATCGGGCTGCTTCTTA+CGG + chr7_2:63002373-63002392 None:intergenic 60.0%
! GAGGCCCGGCTTTAACGAAC+GGG + chr7_2:63002205-63002224 None:intergenic 60.0%
CAGGCTCTCTTGCAGCTGCT+GGG - chr7_2:63002252-63002271 Msa1068010:intron 60.0%
GCGGATCGGGCTGCTTCTTA+CGG + chr7_2:63002373-63002392 None:intergenic 60.0%
GCAGGCTCTCTTGCAGCTGC+TGG - chr7_2:63002251-63002270 Msa1068010:intron 65.0%
GCAGGCTCTCTTGCAGCTGC+TGG - chr7_2:63002251-63002270 Msa1068010:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 63001147 63002768 63001147 ID=Msa1068010;Name=Msa1068010
chr7_2 mRNA 63001147 63002768 63001147 ID=Msa1068010-mRNA-1;Parent=Msa1068010;Name=Msa1068010-mRNA-1;_AED=0.02;_eAED=0.02;_QI=144|1|1|1|1|1|2|257|214
chr7_2 exon 63001147 63001895 63001147 ID=Msa1068010-mRNA-1:exon:12906;Parent=Msa1068010-mRNA-1
chr7_2 exon 63002472 63002768 63002472 ID=Msa1068010-mRNA-1:exon:12905;Parent=Msa1068010-mRNA-1
chr7_2 five_prime_UTR 63002625 63002768 63002625 ID=Msa1068010-mRNA-1:five_prime_utr;Parent=Msa1068010-mRNA-1
chr7_2 CDS 63002472 63002624 63002472 ID=Msa1068010-mRNA-1:cds;Parent=Msa1068010-mRNA-1
chr7_2 CDS 63001404 63001895 63001404 ID=Msa1068010-mRNA-1:cds;Parent=Msa1068010-mRNA-1
chr7_2 three_prime_UTR 63001147 63001403 63001147 ID=Msa1068010-mRNA-1:three_prime_utr;Parent=Msa1068010-mRNA-1
Gene Sequence

>Msa1068010

ATGGCAGCTGCTTCTCCTATGGCAAGCCAACTCAAGTCCAGCTTCACTAGACCTTTGGTCACACCTAGGGGACTTTGTGGCTCTTCCCCACTCCATCAGTTGCCTTCTAGAAGGCAATTTAACTTCACTGTTAAGGCAATCCAATCTGAAAAGCAAAATTACCAAGTGATTCAACCAATCAACGGTGACCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCACTTGTTGCATGGTACCTCTCCAACTTACCAGGCTACAGAACTGCAGTGAACCCACTACTTAGGGGAATTGAAGTCGGCTTAGCCCATGGATTCTTCCTCGTAGGCCCGTTCGTTAAAGCCGGGCCTCTAAGGAACACCGAATATGCCGGATCAGCAGGCTCTCTTGCAGCTGCTGGGCTTGTTGTTATCCTCAGCATTTGCCTTACAATCTATGGAGTTTCATCATTCAATGAAGGTGATGCATCAACTGCTCCATCTTTGACCTTAACAGGCCGTAAGAAGCAGCCCGATCCGCTCCAAACAGCTGATGGTTGGTCCAAGTTCACTGGTGGGTTTTTCTTTGGTGGCATTTCTGGTGTTACCTGGGCTTACTTCCTTCTTTATGTTTTGGATCTTCCTTACTTTGTCAAGTAA

Protein sequence

>Msa1068010

MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKQNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLVVILSICLTIYGVSSFNEGDASTAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK*