Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44141.t1 | XP_003591163.1 | 98.5 | 135 | 2 | 0 | 1 | 135 | 1 | 135 | 1.00E-64 | 256.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44141.t1 | Q940B0 | 83.7 | 135 | 22 | 0 | 1 | 135 | 1 | 135 | 1.4e-57 | 223.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44141.t1 | G7I8R4 | 98.5 | 135 | 2 | 0 | 1 | 135 | 1 | 135 | 7.4e-65 | 256.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene44141 | -0.802851 | 4.61E-49 | -1.69E-46 |
| MS.gene049255 | MS.gene44141 | 0.850394 | 1.75E-60 | -1.69E-46 |
| MS.gene049340 | MS.gene44141 | 0.814966 | 1.18E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene44141 | 0.850276 | 1.89E-60 | -1.69E-46 |
| MS.gene049411 | MS.gene44141 | 0.822902 | 1.85E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene44141 | 0.822258 | 2.61E-53 | -1.69E-46 |
| MS.gene049821 | MS.gene44141 | 0.805406 | 1.36E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene44141 | 0.819844 | 9.38E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene44141 | 0.819061 | 1.42E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene44141 | 0.830697 | 2.54E-55 | -1.69E-46 |
| MS.gene050277 | MS.gene44141 | 0.879072 | 1.68E-69 | -1.69E-46 |
| MS.gene050320 | MS.gene44141 | 0.81234 | 4.45E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene44141 | 0.814678 | 1.36E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene44141 | 0.843803 | 1.12E-58 | -1.69E-46 |
| MS.gene050752 | MS.gene44141 | 0.844348 | 8.00E-59 | -1.69E-46 |
| MS.gene050807 | MS.gene44141 | 0.823851 | 1.11E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene44141 | 0.908488 | 1.62E-81 | -1.69E-46 |
| MS.gene050916 | MS.gene44141 | 0.807344 | 5.29E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene44141 | 0.80084 | 1.19E-48 | -1.69E-46 |
| MS.gene050955 | MS.gene44141 | 0.8255 | 4.53E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene44141 | 0.820498 | 6.65E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene44141 | 0.828475 | 8.81E-55 | -1.69E-46 |
| MS.gene051233 | MS.gene44141 | 0.819475 | 1.14E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene44141 | 0.866196 | 3.40E-65 | -1.69E-46 |
| MS.gene051328 | MS.gene44141 | 0.859269 | 4.65E-63 | -1.69E-46 |
| MS.gene051330 | MS.gene44141 | 0.847219 | 1.33E-59 | -1.69E-46 |
| MS.gene051343 | MS.gene44141 | 0.826558 | 2.54E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene44141 | 0.833624 | 4.79E-56 | -1.69E-46 |
| MS.gene051687 | MS.gene44141 | 0.82552 | 4.48E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene44141 | 0.835561 | 1.56E-56 | -1.69E-46 |
| MS.gene051746 | MS.gene44141 | 0.885759 | 6.16E-72 | -1.69E-46 |
| MS.gene051748 | MS.gene44141 | 0.877185 | 7.70E-69 | -1.69E-46 |
| MS.gene051791 | MS.gene44141 | 0.818341 | 2.06E-52 | -1.69E-46 |
| MS.gene051850 | MS.gene44141 | 0.889313 | 2.71E-73 | -1.69E-46 |
| MS.gene051885 | MS.gene44141 | 0.863133 | 3.09E-64 | -1.69E-46 |
| MS.gene05188 | MS.gene44141 | 0.805674 | 1.19E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene44141 | 0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene44141 | 0.890332 | 1.08E-73 | -1.69E-46 |
| MS.gene051975 | MS.gene44141 | 0.80813 | 3.60E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene44141 | 0.803629 | 3.18E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene44141 | 0.872603 | 2.80E-67 | -1.69E-46 |
| MS.gene052286 | MS.gene44141 | 0.803739 | 3.02E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene44141 | 0.841226 | 5.40E-58 | -1.69E-46 |
| MS.gene052479 | MS.gene44141 | 0.816145 | 6.43E-52 | -1.69E-46 |
| MS.gene052879 | MS.gene44141 | 0.819636 | 1.05E-52 | -1.69E-46 |
| MS.gene052880 | MS.gene44141 | 0.803099 | 4.10E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene44141 | 0.920389 | 1.36E-87 | -1.69E-46 |
| MS.gene053058 | MS.gene44141 | 0.824923 | 6.20E-54 | -1.69E-46 |
| MS.gene053109 | MS.gene44141 | 0.822443 | 2.36E-53 | -1.69E-46 |
| MS.gene053122 | MS.gene44141 | 0.812098 | 5.03E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene44141 | 0.805876 | 1.08E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene44141 | 0.800483 | 1.41E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene44141 | 0.861801 | 7.94E-64 | -1.69E-46 |
| MS.gene05364 | MS.gene44141 | 0.809062 | 2.28E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene44141 | 0.841746 | 3.94E-58 | -1.69E-46 |
| MS.gene054250 | MS.gene44141 | 0.822562 | 2.22E-53 | -1.69E-46 |
| MS.gene054403 | MS.gene44141 | 0.845187 | 4.75E-59 | -1.69E-46 |
| MS.gene054937 | MS.gene44141 | 0.832729 | 8.01E-56 | -1.69E-46 |
| MS.gene055162 | MS.gene44141 | 0.837096 | 6.36E-57 | -1.69E-46 |
| MS.gene055174 | MS.gene44141 | 0.809084 | 2.25E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene44141 | 0.854291 | 1.36E-61 | -1.69E-46 |
| MS.gene055465 | MS.gene44141 | 0.805251 | 1.46E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene44141 | 0.800193 | 1.62E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene44141 | 0.832788 | 7.74E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene44141 | 0.812697 | 3.72E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene44141 | 0.832 | 1.21E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene44141 | -0.845453 | 4.02E-59 | -1.69E-46 |
| MS.gene055808 | MS.gene44141 | 0.830264 | 3.24E-55 | -1.69E-46 |
| MS.gene055891 | MS.gene44141 | 0.808533 | 2.96E-50 | -1.69E-46 |
| MS.gene055912 | MS.gene44141 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene055979 | MS.gene44141 | 0.826104 | 3.26E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene44141 | -0.858349 | 8.76E-63 | -1.69E-46 |
| MS.gene056075 | MS.gene44141 | 0.921818 | 2.19E-88 | -1.69E-46 |
| MS.gene056091 | MS.gene44141 | 0.834376 | 3.11E-56 | -1.69E-46 |
| MS.gene056215 | MS.gene44141 | 0.81769 | 2.89E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene44141 | 0.817081 | 3.97E-52 | -1.69E-46 |
| MS.gene056580 | MS.gene44141 | 0.824797 | 6.64E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene44141 | 0.836678 | 8.13E-57 | -1.69E-46 |
| MS.gene056631 | MS.gene44141 | 0.873536 | 1.36E-67 | -1.69E-46 |
| MS.gene056986 | MS.gene44141 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene44141 | 0.850903 | 1.26E-60 | -1.69E-46 |
| MS.gene057094 | MS.gene44141 | 0.887682 | 1.15E-72 | -1.69E-46 |
| MS.gene057234 | MS.gene44141 | 0.854077 | 1.56E-61 | -1.69E-46 |
| MS.gene057287 | MS.gene44141 | 0.80097 | 1.12E-48 | -1.69E-46 |
| MS.gene057694 | MS.gene44141 | 0.813013 | 3.17E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene44141 | 0.907521 | 4.63E-81 | -1.69E-46 |
| MS.gene05781 | MS.gene44141 | 0.817548 | 3.11E-52 | -1.69E-46 |
| MS.gene058054 | MS.gene44141 | 0.824107 | 9.65E-54 | -1.69E-46 |
| MS.gene058055 | MS.gene44141 | 0.842064 | 3.25E-58 | -1.69E-46 |
| MS.gene058074 | MS.gene44141 | 0.8384 | 2.94E-57 | -1.69E-46 |
| MS.gene058216 | MS.gene44141 | 0.809783 | 1.60E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene44141 | 0.822662 | 2.10E-53 | -1.69E-46 |
| MS.gene058261 | MS.gene44141 | 0.803196 | 3.91E-49 | -1.69E-46 |
| MS.gene058364 | MS.gene44141 | 0.803511 | 3.37E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene44141 | 0.841538 | 4.47E-58 | -1.69E-46 |
| MS.gene058906 | MS.gene44141 | 0.841072 | 5.93E-58 | -1.69E-46 |
| MS.gene059146 | MS.gene44141 | 0.821264 | 4.43E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene44141 | 0.851196 | 1.04E-60 | -1.69E-46 |
| MS.gene059227 | MS.gene44141 | 0.842689 | 2.22E-58 | -1.69E-46 |
| MS.gene059726 | MS.gene44141 | 0.819142 | 1.36E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene44141 | 0.831183 | 1.93E-55 | -1.69E-46 |
| MS.gene059787 | MS.gene44141 | 0.800809 | 1.21E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene44141 | 0.919962 | 2.33E-87 | -1.69E-46 |
| MS.gene06011 | MS.gene44141 | 0.813007 | 3.18E-51 | -1.69E-46 |
| MS.gene060429 | MS.gene44141 | 0.853673 | 2.05E-61 | -1.69E-46 |
| MS.gene060587 | MS.gene44141 | 0.828116 | 1.08E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene44141 | 0.835904 | 1.28E-56 | -1.69E-46 |
| MS.gene060917 | MS.gene44141 | 0.846651 | 1.90E-59 | -1.69E-46 |
| MS.gene061006 | MS.gene44141 | 0.802462 | 5.55E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene44141 | 0.801875 | 7.32E-49 | -1.69E-46 |
| MS.gene061145 | MS.gene44141 | 0.800804 | 1.21E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44141.t1 | MTR_1g083460 | 97.080 | 137 | 4 | 0 | 1 | 137 | 1 | 137 | 2.71e-93 | 268 |
| MS.gene44141.t1 | MTR_7g108805 | 91.971 | 137 | 11 | 0 | 1 | 137 | 1 | 137 | 2.47e-88 | 256 |
| MS.gene44141.t1 | MTR_7g112880 | 82.482 | 137 | 24 | 0 | 1 | 137 | 1 | 137 | 7.29e-81 | 237 |
| MS.gene44141.t1 | MTR_7g112880 | 78.049 | 82 | 18 | 0 | 54 | 135 | 1 | 82 | 5.33e-44 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44141.t1 | AT5G27850 | 82.482 | 137 | 24 | 0 | 1 | 137 | 1 | 137 | 6.47e-80 | 234 |
| MS.gene44141.t1 | AT3G05590 | 81.752 | 137 | 25 | 0 | 1 | 137 | 1 | 137 | 1.14e-78 | 231 |
| MS.gene44141.t1 | AT2G47570 | 74.265 | 136 | 34 | 1 | 3 | 137 | 1 | 136 | 2.33e-68 | 205 |
| MS.gene44141.t1 | AT3G05590 | 81.707 | 82 | 15 | 0 | 54 | 135 | 1 | 82 | 1.15e-44 | 143 |
| MS.gene44141.t1 | AT3G05590 | 81.707 | 82 | 15 | 0 | 54 | 135 | 1 | 82 | 1.15e-44 | 143 |
| MS.gene44141.t1 | AT5G27850 | 80.488 | 82 | 16 | 0 | 54 | 135 | 1 | 82 | 5.59e-44 | 142 |
Find 44 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTATTGCTGTCATTTAA+TGG | 0.159518 | 1.3:+59056590 | MS.gene44141:CDS |
| CATTCGATCAGTTGGCTCTT+AGG | 0.165548 | 1.3:+59056366 | MS.gene44141:CDS |
| TATTCTTGCCCTTGCCTTCT+CGG | 0.231639 | 1.3:-59056318 | None:intergenic |
| AGATAGATATCATTGGATTT+TGG | 0.265066 | 1.3:-59055210 | None:intergenic |
| CACTATAGTGATTCCTTTGT+TGG | 0.281093 | 1.3:-59056570 | None:intergenic |
| TGATATCTATCTCAAGCTTT+TGG | 0.326212 | 1.3:+59055221 | MS.gene44141:CDS |
| GTTGGCTCTTAGGGCCCCTC+TGG | 0.332505 | 1.3:+59056376 | MS.gene44141:CDS |
| AGCTTTATCGGTTCCTTGTT+CGG | 0.346996 | 1.3:+59055997 | MS.gene44141:intron |
| CGGTTCCTTGTTCGGAGAAC+TGG | 0.351555 | 1.3:+59056005 | MS.gene44141:CDS |
| ATTCGATCAGTTGGCTCTTA+GGG | 0.374062 | 1.3:+59056367 | MS.gene44141:CDS |
| CCTGAGAGCTGTAACCTTGA+TGG | 0.403591 | 1.3:-59056291 | None:intergenic |
| GGTAAAATTGCTGTCGTGGT+GGG | 0.429219 | 1.3:+59056230 | MS.gene44141:CDS |
| CCATCAAGGTTACAGCTCTC+AGG | 0.444373 | 1.3:+59056291 | MS.gene44141:CDS |
| AAGCTTGAGATAGATATCAT+TGG | 0.447582 | 1.3:-59055217 | None:intergenic |
| TTTGTAGGGTATCGATCTTA+AGG | 0.453950 | 1.3:+59055152 | MS.gene44141:intron |
| ATCAACCTTGACAAAGATAG+TGG | 0.491899 | 1.3:-59056086 | None:intergenic |
| GTAAAATTGCTGTCGTGGTG+GGG | 0.493129 | 1.3:+59056231 | MS.gene44141:CDS |
| CAAGAGGTTGTTTATGAGCA+AGG | 0.493391 | 1.3:+59056052 | MS.gene44141:CDS |
| ATGCTTAACATTCGATCAGT+TGG | 0.511340 | 1.3:+59056358 | MS.gene44141:CDS |
| TAATGAAGTTCCAGCCATCA+AGG | 0.511887 | 1.3:+59056277 | MS.gene44141:CDS |
| TTCTCTCTAGTCTCCAACAA+AGG | 0.526953 | 1.3:+59056557 | MS.gene44141:CDS |
| AGCTCTCAGGTTTACCGAGA+AGG | 0.539540 | 1.3:+59056304 | MS.gene44141:CDS |
| TTGGCTCTTAGGGCCCCTCT+GGG | 0.540521 | 1.3:+59056377 | MS.gene44141:CDS |
| AGGTAAAATTGCTGTCGTGG+TGG | 0.541180 | 1.3:+59056229 | MS.gene44141:CDS |
| TAAAATTGCTGTCGTGGTGG+GGG | 0.545281 | 1.3:+59056232 | MS.gene44141:CDS |
| TCAATGCTGTTATACTCAAG+AGG | 0.549427 | 1.3:+59056036 | MS.gene44141:CDS |
| TCAGGTTTACCGAGAAGGCA+AGG | 0.549678 | 1.3:+59056309 | MS.gene44141:CDS |
| TGCTGCCAGTTCTCCGAACA+AGG | 0.549972 | 1.3:-59056010 | None:intergenic |
| AGGCAAGGGCAAGAATAGAA+AGG | 0.551093 | 1.3:+59056324 | MS.gene44141:CDS |
| GGCAAGGGCAAGAATAGAAA+GGG | 0.553936 | 1.3:+59056325 | MS.gene44141:CDS |
| AGATTGACAAACCTTGCCAT+TGG | 0.555253 | 1.3:-59056117 | None:intergenic |
| TAGGGTATCGATCTTAAGGC+AGG | 0.555670 | 1.3:+59055156 | MS.gene44141:intron |
| AGAGCTGTAACCTTGATGGC+TGG | 0.558387 | 1.3:-59056287 | None:intergenic |
| AACCTCCACTATCTTTGTCA+AGG | 0.576324 | 1.3:+59056081 | MS.gene44141:CDS |
| GGCCCCTCTGGGACAAAACA+CGG | 0.583895 | 1.3:+59056388 | MS.gene44141:CDS |
| CAGGTTTACCGAGAAGGCAA+GGG | 0.596428 | 1.3:+59056310 | MS.gene44141:CDS |
| AGGGCAAGAATAGAAAGGGC+TGG | 0.616183 | 1.3:+59056329 | MS.gene44141:CDS |
| GATCAAGTATACCAATGGCA+AGG | 0.626076 | 1.3:+59056106 | MS.gene44141:CDS |
| TGGCTGGAACTTCATTAACA+CGG | 0.640444 | 1.3:-59056271 | None:intergenic |
| AGGTTGATCAAGTATACCAA+TGG | 0.643281 | 1.3:+59056101 | MS.gene44141:CDS |
| AACCTTGACAAAGATAGTGG+AGG | 0.643571 | 1.3:-59056083 | None:intergenic |
| GGAAGGTAAAATTGCTGTCG+TGG | 0.652028 | 1.3:+59056226 | MS.gene44141:intron |
| GGTATCGATCTTAAGGCAGG+AGG | 0.692243 | 1.3:+59055159 | MS.gene44141:CDS |
| GCAAGAATAGAAAGGGCTGG+TGG | 0.708893 | 1.3:+59056332 | MS.gene44141:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATTT+AGG | - | chr1.3:59055673-59055692 | None:intergenic | 0.0% |
| !!! | TATTATTGTTTTAAAAAACA+AGG | + | chr1.3:59055686-59055705 | MS.gene44141:intron | 10.0% |
| !!! | TGTTTTCAAAATATTATTAT+GGG | + | chr1.3:59055589-59055608 | MS.gene44141:intron | 10.0% |
| !! | AATGAAATATAACCAAAAAT+AGG | - | chr1.3:59055539-59055558 | None:intergenic | 15.0% |
| !!! | CTGTTTTCAAAATATTATTA+TGG | + | chr1.3:59055588-59055607 | MS.gene44141:intron | 15.0% |
| !!! | GTTTTAGCTTTATAAAAAAA+TGG | - | chr1.3:59055857-59055876 | None:intergenic | 15.0% |
| !!! | TTAATAGAAGTGATTTTTAT+GGG | + | chr1.3:59055752-59055771 | MS.gene44141:intron | 15.0% |
| !! | CATAGTCAAAAAAAATCATT+GGG | - | chr1.3:59055375-59055394 | None:intergenic | 20.0% |
| !! | TAGATATATGAGAAAAATGA+GGG | - | chr1.3:59055887-59055906 | None:intergenic | 20.0% |
| !! | TCAGTTTACTATAGTTATAA+TGG | + | chr1.3:59056177-59056196 | MS.gene44141:intron | 20.0% |
| !!! | AAGTTTAATTTATAATGCTG+AGG | + | chr1.3:59055420-59055439 | MS.gene44141:intron | 20.0% |
| !!! | AGTTTAATTTATAATGCTGA+GGG | + | chr1.3:59055421-59055440 | MS.gene44141:intron | 20.0% |
| !!! | GTTAATAGAAGTGATTTTTA+TGG | + | chr1.3:59055751-59055770 | MS.gene44141:intron | 20.0% |
| !!! | TATTGTTTTAAAAAACAAGG+AGG | + | chr1.3:59055689-59055708 | MS.gene44141:intron | 20.0% |
| !!! | TTACATTGAATTGTTTTGAT+TGG | + | chr1.3:59055961-59055980 | MS.gene44141:intron | 20.0% |
| !!! | TTTTTGGTTATATTTCATTG+CGG | + | chr1.3:59055540-59055559 | MS.gene44141:intron | 20.0% |
| ! | AAGAAATAACATAAAGCTAC+AGG | - | chr1.3:59055305-59055324 | None:intergenic | 25.0% |
| ! | AATTCAAACGTAAGAAACAA+TGG | - | chr1.3:59055128-59055147 | None:intergenic | 25.0% |
| ! | AGAAATAACATAAAGCTACA+GGG | - | chr1.3:59055304-59055323 | None:intergenic | 25.0% |
| ! | CAAAAAGACGTTAAATAATC+AGG | - | chr1.3:59056510-59056529 | None:intergenic | 25.0% |
| ! | GCATAGTCAAAAAAAATCAT+TGG | - | chr1.3:59055376-59055395 | None:intergenic | 25.0% |
| ! | GTAGATATATGAGAAAAATG+AGG | - | chr1.3:59055888-59055907 | None:intergenic | 25.0% |
| ! | GTTGAAATGTAAGCAAAAAT+GGG | + | chr1.3:59055504-59055523 | MS.gene44141:intron | 25.0% |
| ! | TGCATAGGTAAATTTCAAAA+TGG | - | chr1.3:59056206-59056225 | None:intergenic | 25.0% |
| ! | TGTTGAAATGTAAGCAAAAA+TGG | + | chr1.3:59055503-59055522 | MS.gene44141:intron | 25.0% |
| !! | AGATAGATATCATTGGATTT+TGG | - | chr1.3:59055213-59055232 | None:intergenic | 25.0% |
| !! | TGTCATTGACAAACAATTTT+AGG | + | chr1.3:59055329-59055348 | MS.gene44141:intron | 25.0% |
| !!! | ATTTTGAAATTTACCTATGC+AGG | + | chr1.3:59056205-59056224 | MS.gene44141:intron | 25.0% |
| !!! | TGATTGAACTTTTTAGAGTA+TGG | + | chr1.3:59056528-59056547 | MS.gene44141:intron | 25.0% |
| !!! | TTTTACATGATCAGCTTTAT+CGG | + | chr1.3:59055985-59056004 | MS.gene44141:intron | 25.0% |
| AAGCTTGAGATAGATATCAT+TGG | - | chr1.3:59055220-59055239 | None:intergenic | 30.0% | |
| ACGTTTGAATTGAACTTTGT+AGG | + | chr1.3:59055137-59055156 | MS.gene44141:intron | 30.0% | |
| CGTTTGAATTGAACTTTGTA+GGG | + | chr1.3:59055138-59055157 | MS.gene44141:intron | 30.0% | |
| TATTATGGGTGTGTTTGTTT+AGG | + | chr1.3:59055603-59055622 | MS.gene44141:intron | 30.0% | |
| TTGCTTACATTTCAACATAG+AGG | - | chr1.3:59055500-59055519 | None:intergenic | 30.0% | |
| ! | AGGAAAAGCTAACTCATTTT+AGG | - | chr1.3:59055653-59055672 | None:intergenic | 30.0% |
| ! | GGAAAAGCTAACTCATTTTA+GGG | - | chr1.3:59055652-59055671 | None:intergenic | 30.0% |
| ! | TGATATCTATCTCAAGCTTT+TGG | + | chr1.3:59055221-59055240 | MS.gene44141:CDS | 30.0% |
| ATCAACCTTGACAAAGATAG+TGG | - | chr1.3:59056089-59056108 | None:intergenic | 35.0% | |
| ATGCTTAACATTCGATCAGT+TGG | + | chr1.3:59056358-59056377 | MS.gene44141:CDS | 35.0% | |
| CACTATAGTGATTCCTTTGT+TGG | - | chr1.3:59056573-59056592 | None:intergenic | 35.0% | |
| TCAATGCTGTTATACTCAAG+AGG | + | chr1.3:59056036-59056055 | MS.gene44141:CDS | 35.0% | |
| TGAAATTTACCTATGCAGGA+AGG | + | chr1.3:59056209-59056228 | MS.gene44141:intron | 35.0% | |
| TGGTTATATTTCATTGCGGA+TGG | + | chr1.3:59055544-59055563 | MS.gene44141:intron | 35.0% | |
| ! | AGGTTGATCAAGTATACCAA+TGG | + | chr1.3:59056101-59056120 | MS.gene44141:CDS | 35.0% |
| ! | GGGTCGAAAAAACCTATTTT+TGG | + | chr1.3:59055524-59055543 | MS.gene44141:intron | 35.0% |
| !! | TTTGTAGGGTATCGATCTTA+AGG | + | chr1.3:59055152-59055171 | MS.gene44141:intron | 35.0% |
| AACCTCCACTATCTTTGTCA+AGG | + | chr1.3:59056081-59056100 | MS.gene44141:CDS | 40.0% | |
| AGATTGACAAACCTTGCCAT+TGG | - | chr1.3:59056120-59056139 | None:intergenic | 40.0% | |
| CAAGAGGTTGTTTATGAGCA+AGG | + | chr1.3:59056052-59056071 | MS.gene44141:CDS | 40.0% | |
| GATCAAGTATACCAATGGCA+AGG | + | chr1.3:59056106-59056125 | MS.gene44141:CDS | 40.0% | |
| TAATGAAGTTCCAGCCATCA+AGG | + | chr1.3:59056277-59056296 | MS.gene44141:CDS | 40.0% | |
| TGGCTGGAACTTCATTAACA+CGG | - | chr1.3:59056274-59056293 | None:intergenic | 40.0% | |
| TTCTCTCTAGTCTCCAACAA+AGG | + | chr1.3:59056557-59056576 | MS.gene44141:CDS | 40.0% | |
| ! | AAACACGGTATGTGTCATTC+TGG | + | chr1.3:59056403-59056422 | MS.gene44141:intron | 40.0% |
| ! | AACCTTGACAAAGATAGTGG+AGG | - | chr1.3:59056086-59056105 | None:intergenic | 40.0% |
| ! | ATTCGATCAGTTGGCTCTTA+GGG | + | chr1.3:59056367-59056386 | MS.gene44141:CDS | 40.0% |
| ! | CTATCTCAAGCTTTTGGTCA+AGG | + | chr1.3:59055227-59055246 | MS.gene44141:CDS | 40.0% |
| ! | GCAATTTTACCTTCCTGCAT+AGG | - | chr1.3:59056221-59056240 | None:intergenic | 40.0% |
| !! | AGCTTTATCGGTTCCTTGTT+CGG | + | chr1.3:59055997-59056016 | MS.gene44141:intron | 40.0% |
| AGGCAAGGGCAAGAATAGAA+AGG | + | chr1.3:59056324-59056343 | MS.gene44141:CDS | 45.0% | |
| AGGTAAAATTGCTGTCGTGG+TGG | + | chr1.3:59056229-59056248 | MS.gene44141:CDS | 45.0% | |
| GGAAGGTAAAATTGCTGTCG+TGG | + | chr1.3:59056226-59056245 | MS.gene44141:intron | 45.0% | |
| GGCAAGGGCAAGAATAGAAA+GGG | + | chr1.3:59056325-59056344 | MS.gene44141:CDS | 45.0% | |
| GGTAAAATTGCTGTCGTGGT+GGG | + | chr1.3:59056230-59056249 | MS.gene44141:CDS | 45.0% | |
| GTAAAATTGCTGTCGTGGTG+GGG | + | chr1.3:59056231-59056250 | MS.gene44141:CDS | 45.0% | |
| TAAAATTGCTGTCGTGGTGG+GGG | + | chr1.3:59056232-59056251 | MS.gene44141:CDS | 45.0% | |
| TATTCTTGCCCTTGCCTTCT+CGG | - | chr1.3:59056321-59056340 | None:intergenic | 45.0% | |
| ! | ATACCGTGTTTTGTCCCAGA+GGG | - | chr1.3:59056394-59056413 | None:intergenic | 45.0% |
| ! | CATTCGATCAGTTGGCTCTT+AGG | + | chr1.3:59056366-59056385 | MS.gene44141:CDS | 45.0% |
| !! | TAGGGTATCGATCTTAAGGC+AGG | + | chr1.3:59055156-59055175 | MS.gene44141:intron | 45.0% |
| AGCTCTCAGGTTTACCGAGA+AGG | + | chr1.3:59056304-59056323 | MS.gene44141:CDS | 50.0% | |
| AGGGCAAGAATAGAAAGGGC+TGG | + | chr1.3:59056329-59056348 | MS.gene44141:CDS | 50.0% | |
| CAGGTTTACCGAGAAGGCAA+GGG | + | chr1.3:59056310-59056329 | MS.gene44141:CDS | 50.0% | |
| CCATCAAGGTTACAGCTCTC+AGG | + | chr1.3:59056291-59056310 | MS.gene44141:CDS | 50.0% | |
| CCTGAGAGCTGTAACCTTGA+TGG | - | chr1.3:59056294-59056313 | None:intergenic | 50.0% | |
| GCAAGAATAGAAAGGGCTGG+TGG | + | chr1.3:59056332-59056351 | MS.gene44141:CDS | 50.0% | |
| TCAGGTTTACCGAGAAGGCA+AGG | + | chr1.3:59056309-59056328 | MS.gene44141:CDS | 50.0% | |
| ! | AGAGCTGTAACCTTGATGGC+TGG | - | chr1.3:59056290-59056309 | None:intergenic | 50.0% |
| ! | CATACCGTGTTTTGTCCCAG+AGG | - | chr1.3:59056395-59056414 | None:intergenic | 50.0% |
| ! | TACCGTGTTTTGTCCCAGAG+GGG | - | chr1.3:59056393-59056412 | None:intergenic | 50.0% |
| !! | GGTATCGATCTTAAGGCAGG+AGG | + | chr1.3:59055159-59055178 | MS.gene44141:CDS | 50.0% |
| CGGTTCCTTGTTCGGAGAAC+TGG | + | chr1.3:59056005-59056024 | MS.gene44141:CDS | 55.0% | |
| TGCTGCCAGTTCTCCGAACA+AGG | - | chr1.3:59056013-59056032 | None:intergenic | 55.0% | |
| ! | TTGGCTCTTAGGGCCCCTCT+GGG | + | chr1.3:59056377-59056396 | MS.gene44141:CDS | 60.0% |
| !! | GGCCCCTCTGGGACAAAACA+CGG | + | chr1.3:59056388-59056407 | MS.gene44141:CDS | 60.0% |
| ! | GTTGGCTCTTAGGGCCCCTC+TGG | + | chr1.3:59056376-59056395 | MS.gene44141:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59055065 | 59056609 | 59055065 | ID=MS.gene44141 |
| chr1.3 | mRNA | 59055065 | 59056609 | 59055065 | ID=MS.gene44141.t1;Parent=MS.gene44141 |
| chr1.3 | exon | 59055065 | 59055067 | 59055065 | ID=MS.gene44141.t1.exon1;Parent=MS.gene44141.t1 |
| chr1.3 | CDS | 59055065 | 59055067 | 59055065 | ID=cds.MS.gene44141.t1;Parent=MS.gene44141.t1 |
| chr1.3 | exon | 59055159 | 59055248 | 59055159 | ID=MS.gene44141.t1.exon2;Parent=MS.gene44141.t1 |
| chr1.3 | CDS | 59055159 | 59055248 | 59055159 | ID=cds.MS.gene44141.t1;Parent=MS.gene44141.t1 |
| chr1.3 | exon | 59055999 | 59056127 | 59055999 | ID=MS.gene44141.t1.exon3;Parent=MS.gene44141.t1 |
| chr1.3 | CDS | 59055999 | 59056127 | 59055999 | ID=cds.MS.gene44141.t1;Parent=MS.gene44141.t1 |
| chr1.3 | exon | 59056227 | 59056409 | 59056227 | ID=MS.gene44141.t1.exon4;Parent=MS.gene44141.t1 |
| chr1.3 | CDS | 59056227 | 59056409 | 59056227 | ID=cds.MS.gene44141.t1;Parent=MS.gene44141.t1 |
| chr1.3 | exon | 59056544 | 59056609 | 59056544 | ID=MS.gene44141.t1.exon5;Parent=MS.gene44141.t1 |
| chr1.3 | CDS | 59056544 | 59056609 | 59056544 | ID=cds.MS.gene44141.t1;Parent=MS.gene44141.t1 |
| Gene Sequence |
| Protein sequence |
