AlfalfaGEDB | MS.gene06984

M. sativa cultivar XinJiangDaYe / MS.gene06984

KEGG: -
GO: -
PFAM: PF04969.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06984.t1	KEH24379.1	90.3	226	4	3	1	225	1	209	2.20E-68	268.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06984.t1	P0C8Z0	70.7	123	33	1	1	123	1	120	2.6e-46	186.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06984.t1	A0A072U3U0	90.3	226	4	3	1	225	1	209	1.6e-68	268.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049129	MS.gene06984	-0.86234	5.43E-64	-1.69E-46
MS.gene049140	MS.gene06984	0.817387	3.39E-52	-1.69E-46
MS.gene049255	MS.gene06984	0.860433	2.07E-63	-1.69E-46
MS.gene049341	MS.gene06984	0.803028	4.24E-49	-1.69E-46
MS.gene049411	MS.gene06984	0.843602	1.27E-58	-1.69E-46
MS.gene049580	MS.gene06984	0.839153	1.88E-57	-1.69E-46
MS.gene049680	MS.gene06984	0.819336	1.23E-52	-1.69E-46
MS.gene049824	MS.gene06984	0.808263	3.38E-50	-1.69E-46
MS.gene049825	MS.gene06984	0.822832	1.92E-53	-1.69E-46
MS.gene049873	MS.gene06984	0.801355	9.36E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06984.t1	MTR_7g108860	94.043	235	3	3	1	225	1	234	8.59e-150	416
MS.gene06984.t1	MTR_8g058597	94.043	235	3	3	1	225	1	234	8.59e-150	416
MS.gene06984.t1	MTR_7g108860	93.991	233	3	3	3	225	11	242	1.47e-148	413
MS.gene06984.t1	MTR_7g108860	93.137	204	4	2	1	194	1	204	1.14e-128	362
MS.gene06984.t1	MTR_7g108860	86.726	226	12	3	1	225	1	209	9.14e-94	273
MS.gene06984.t1	MTR_1g088700	55.652	230	50	5	1	225	1	183	1.15e-74	224
MS.gene06984.t1	MTR_6g034550	50.355	141	66	1	1	137	1	141	4.98e-43	144
MS.gene06984.t1	MTR_6g027770	48.624	109	55	1	1	109	1	108	5.12e-33	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06984.t1	AT4G02450	60.000	125	48	2	1	124	1	124	2.54e-49	161
MS.gene06984.t1	AT4G02450	60.000	125	48	2	1	124	1	124	2.61e-49	161
MS.gene06984.t1	AT3G03773	52.212	113	52	2	1	113	1	111	8.50e-35	120
MS.gene06984.t1	AT3G03773	52.212	113	52	2	1	113	1	111	9.43e-35	121
MS.gene06984.t1	AT3G03773	51.327	113	53	2	1	113	55	165	2.92e-33	119

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Find 81 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGATCTTACTCCAGA+AGG	0.549028	7.3:+6324709	MS.gene06984:CDS
AAGAGGTTGCTGCGTGGAGA+AGG	0.527175	7.3:+6325071	MS.gene06984:CDS
AATGGAAGGACTGGGAGGAA+TGG	0.482020	7.3:+6325738	MS.gene06984:CDS
AATGGGAGGAATGGGAGGCA+TGG	0.503653	7.3:+6325663	MS.gene06984:CDS
AATGGGAGGCATGGGAGGAA+TGG	0.435114	7.3:+6325720	MS.gene06984:CDS
AATGGGAGGCATGGGCGGCT+TGG	0.421152	7.3:+6325672	MS.gene06984:CDS
ACTGCAGAAATTCGGCGGGA+TGG	0.533257	7.3:+6325627	MS.gene06984:intron
ACTGCAGAAATTTGCTGGGA+TGG	0.543444	7.3:+6325847	MS.gene06984:intron
AGAAGGCTGAGAGTGGATGG+TGG	0.722955	7.3:+6325048	MS.gene06984:CDS
AGCACCAGCACTACCAGAAA+AGG	0.488899	7.3:-6324740	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAGTCGTCAAATTCAA+AGG	-	chr7.3:6324303-6324322	None:intergenic	30.0%
AAAGTTCGTTGTTAACATGA+GGG	+	chr7.3:6326621-6326640	MS.gene06984:intron	30.0%
AACAAGTCGTCAAATTCAAA+GGG	-	chr7.3:6324302-6324321	None:intergenic	30.0%
ATGTCAAGCAACTAAGAAAA+AGG	-	chr7.3:6326931-6326950	None:intergenic	30.0%
CAACGTAAAACATCAATAGA+AGG	-	chr7.3:6325592-6325611	None:intergenic	30.0%
CATTCAGGTAAACATTCATA+AGG	-	chr7.3:6324850-6324869	None:intergenic	30.0%
CTATGTCCTAAAATGAAAGA+TGG	+	chr7.3:6324823-6324842	MS.gene06984:intron	30.0%
GACACTTCTTGATCTATAAT+TGG	-	chr7.3:6327076-6327095	None:intergenic	30.0%
GTACAGTAAATGTAAACAAG+AGG	+	chr7.3:6326283-6326302	MS.gene06984:intron	30.0%
TAAAGTTCGTTGTTAACATG+AGG	+	chr7.3:6326620-6326639	MS.gene06984:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	6324112	6327180	6324112	ID=MS.gene06984
chr7.3	mRNA	6324112	6327180	6324112	ID=MS.gene06984.t1;Parent=MS.gene06984
chr7.3	exon	6324112	6324116	6324112	ID=MS.gene06984.t1.exon1;Parent=MS.gene06984.t1
chr7.3	CDS	6324112	6324116	6324112	ID=cds.MS.gene06984.t1;Parent=MS.gene06984.t1
chr7.3	exon	6324630	6324816	6324630	ID=MS.gene06984.t1.exon2;Parent=MS.gene06984.t1
chr7.3	CDS	6324630	6324816	6324630	ID=cds.MS.gene06984.t1;Parent=MS.gene06984.t1
chr7.3	exon	6325002	6325158	6325002	ID=MS.gene06984.t1.exon3;Parent=MS.gene06984.t1
chr7.3	CDS	6325002	6325158	6325002	ID=cds.MS.gene06984.t1;Parent=MS.gene06984.t1
chr7.3	exon	6325256	6325293	6325256	ID=MS.gene06984.t1.exon4;Parent=MS.gene06984.t1
chr7.3	CDS	6325256	6325293	6325256	ID=cds.MS.gene06984.t1;Parent=MS.gene06984.t1
chr7.3	exon	6325634	6325768	6325634	ID=MS.gene06984.t1.exon5;Parent=MS.gene06984.t1
chr7.3	CDS	6325634	6325768	6325634	ID=cds.MS.gene06984.t1;Parent=MS.gene06984.t1
chr7.3	exon	6325854	6325911	6325854	ID=MS.gene06984.t1.exon6;Parent=MS.gene06984.t1
chr7.3	CDS	6325854	6325911	6325854	ID=cds.MS.gene06984.t1;Parent=MS.gene06984.t1
chr7.3	exon	6327083	6327180	6327083	ID=MS.gene06984.t1.exon7;Parent=MS.gene06984.t1
chr7.3	CDS	6327083	6327180	6327083	ID=cds.MS.gene06984.t1;Parent=MS.gene06984.t1

Gene Sequence

>MS.gene06984

ATGAGGTACAATCTCTAAACTCTGCATCTGCAAATCTCTTAGCTCATTATTTCTTTCGCTAATCTTATTATGCCCTTCCGATTTCATCACATAAGCTTGGAATCGCGTTTTCTGTTTTCATCGATTCAAGTTTATTTTTTTACTTGTCTTTTCAATTGATTTGGTATCTTTGCCGATTTGTTACTCACCCTTTGAATTTGACGACTTGTTTTTGTTTCTGATAAAAAAGATTTTTTTTTTTAACTAAATTAAAATAAAACTATGAAACAAAATGTTAGGGGTATCTTGGAATTGATAATTAAATCATGCCTCTATGGTAATTGATGCAGATTGTGATGGCAAATTTGGACTGTGATCTGTAATTTGATTTTTAGTTTTAATTGTGCTTTCTTGTATATGACTATTTGGTTTTTACATCTTCAATTAGATGTAGTTTTTGTTATTAGAGCTGTTTTAAAATGGATGTGTTGGTTTTGATTTATATGCTTATCGGTTTGTCGTTGTACTTTATGATGCAGTCGTCATCCCGAGGTTAAGTGGGCACAGAGAGTAGACAAGGTCTACATCACAGTGCAGTTGGCTGATTCCAAAAATTCCAAAGTTGATCTTACTCCAGAAGGTGATTTTACCTTTTCTGGTAGTGCTGGTGCTGGAGACAATCAGTATGAGCTGAAACTTGAGCTCTTTGACAAGGTTAATGTAGAGGTGAGACTATGTCCTAAAATGAAAGATGGTCCTTATGAATGTTTACCTGAATGAGTTGAATAAGGACTTTGTGTGATACTAGCCTGCTTATGCTGGTGGTCGCAAGCATTTTTAGAATGGTTGTGGTTATGCTTTGCTTGCAAAGATATGGTCTTTAGTATGCCTTCATGACTCTTTGATTGCAGGAGAGCAAAATCAGTGTAGGAGTGCGAAACATATTCTGTGTAGTGCAGAAGGCTGAGAGTGGATGGTGGAAGAGGTTGCTGCGTGGAGAAGGCAAGGCTCCTCATTATGTGAAAATAGATTGGGATAAATGGGTCGATGAAGATGAGGCTGAAGAAGGTATGAATTATGTGTCCTTTGAATTTTTTTAATGGATAGGACAACAATATATTTTTATTGGAAATCTGATCGAATTGTCTCGGTTTTTGTTGGTCAGGTGGTGGTGATGTTGACTTGGGAGGAATGGATTTCTCGGTATGCAATATGTTTTTTTTTTCTTTCCCAGTTGTATCATTTTGTTGATATTAATTTTTAGGATTATGCTAACAAATGCCACAAGTGCCCTTAAGGCACTTGTTAAGGAAACCAAAAGTAGTAGGCTTGCATTGGATTCAACAATATTTTAACTTTTAAAAACTTGAATTCATCACTTCTCACCATTTCTCACTACAATATTTCTATTTCTAACCTCTTCAATTGGTGGGGTGTGATATGATCCATTGGACAGATGGAATTTTACTTGCGTGATATATTCATTTGATTTTATGTTCCTTCTATTGATGTTTTACGTTGTAATTACTGTGTACTACTGCAGAAATTCGGCGGGATGGGTGGTGATGATCCAATGGGAGGAATGGGAGGCATGGGCGGCTTGGGAGGAATGATGGGGGGCATGGGAGGAATGGGAGGCATGGGAGGAATGGAAGGACTGGGAGGAATGGACTTCTCTGTATGTGATGTTTTCAGTTGATTTGCTGTTCTGCTATTGTTATATATGTTGTAATTACTTAATTATTTACTTGTGTGTACTGCAGAAATTTGCTGGGATGGGTGGTGATGCAATGGATGATATTGACGAGAGTGACGATGAAGGTATGCATGCACATTTTCATTTTTGTTGATCTCTCTCTCTCTCTCTCTGTTTATGCACATGATACTTGGTTACTATATAGTATGCATGATACTTAGATTTTTTGTGGTTTGTTATGTTAATATACAGTTAAAACTCTATAAATTAATAATGTCAGGACCGGAGAAATTTATTAATTTAGAGAGTTATTAATTTATCGATAAATTAATAATTATTAATTTAAAGAGTTTTTAAGTAATTATACTGTACATACTAAACAAAAAGGCAAATTAGTCTATGCCTCTTAGAATTACGTTGCAGCGAACCTTGGGACTTAACGTAAATTAGTAACTACTGTGTTCATATGCATTGGAAATCAATAATGACTTTTGAAGTACAGTAAATGTAAACAAGAGGAACAAATGTGTTCAATGTATTCTTAATATATTTTTTTTAGTTTCTACGAATTATTAATTTATGATTTTCTTGGGACCGAAAATTGTAAAGGGATCTCCCGAAAAATTATTATCTTATTATTTTATCAAGTTTTTCAATTTTTTACATTGGCCCAAGTCGGGACCGGACAAATTTATTATTTTAGAGAGTTTATTAATTTACCGAGTATTAATTCAAAGAGTTTCTACTGTAATATGCTTTTATGTAGAAGCAGGCAGCTTAATGTTTAAAGAAATATGAACTTATGACAATGTAGCTTTAAATATTGGTTATCTTAAAGTTCGTTGTTAACATGAGGGTTAAGGATGTTAGCTCGAGTTGCGGAAGTGGAAATAAGTAGCTCTACAGCTTGTATCATGTGTACTTTCTTGAGCTTCTTCGCAAATATAAAAAACTTGATATATATACATTTATATATTTCTGAAGATTAGCGATAAAATTCATATTTTATGTGTAATATTATGAGATTATTAATTTCAATTTGAGGGCATTCACTTGGGAAAGGGGGTTAAAGAAAAGAGGATTCATTTTGAAGTTATGTAGTTTAGCATCAATTCTTTGCAATTTTCACCCCCTTTAATTTCCTTTTTCTTAGTTGCTTGACATGGCTATTGGGCATATGACTCTTCTGTGTGCTTATAACCCCTTTTTTGAACTAGATGCTCATAATGAATGTGAGCAATATAGACATGTTGCAGTTTGTAATTTTTTGCACTAACCCGTGTTTCCCAATTATAGATCAAGAAGTGTCAAAGCCTGGAGAGCAAGATGCTGCTGGCAAGAGCGCTGGTGAGGCAGCTACAGAGAGTAAAGTAGAAGCTACCCCGAGCACATAA

Protein sequence

>MS.gene06984.t1

MSRHPEVKWAQRVDKVYITVQLADSKNSKVDLTPEGDFTFSGSAGAGDNQYELKLELFDKVNVEESKISVGVRNIFCVVQKAESGWWKRLLRGEGKAPHYVKIDWDKWVDEDEAEEGGGDVDLGGMDFSKFGGMGGDDPMGGMGGMGGLGGMMGGMGGMGGMGGMEGLGGMDFSKFAGMGGDAMDDIDESDDEDQEVSKPGEQDAAGKSAGEAATESKVEATPST