Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52404.t1 | P28014.2 | 99.4 | 167 | 1 | 0 | 1 | 167 | 1 | 167 | 4.10E-88 | 334 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52404.t1 | P28014 | 99.4 | 167 | 1 | 0 | 1 | 167 | 1 | 167 | 9.9e-91 | 334.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52404.t1 | I3T0E1 | 98.2 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 6.6e-88 | 332.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene52404 | -0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene049142 | MS.gene52404 | 0.801328 | 9.48E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene52404 | 0.85664 | 2.81E-62 | -1.69E-46 |
| MS.gene04919 | MS.gene52404 | 0.813886 | 2.04E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene52404 | 0.837254 | 5.79E-57 | -1.69E-46 |
| MS.gene049283 | MS.gene52404 | 0.806497 | 7.99E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene52404 | 0.84387 | 1.07E-58 | -1.69E-46 |
| MS.gene049368 | MS.gene52404 | 0.814123 | 1.81E-51 | -1.69E-46 |
| MS.gene049411 | MS.gene52404 | 0.849996 | 2.26E-60 | -1.69E-46 |
| MS.gene049473 | MS.gene52404 | 0.803531 | 3.33E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene52404 | 0.812645 | 3.82E-51 | -1.69E-46 |
| MS.gene049680 | MS.gene52404 | 0.831442 | 1.67E-55 | -1.69E-46 |
| MS.gene049711 | MS.gene52404 | 0.839441 | 1.58E-57 | -1.69E-46 |
| MS.gene049807 | MS.gene52404 | 0.842156 | 3.07E-58 | -1.69E-46 |
| MS.gene049821 | MS.gene52404 | 0.803262 | 3.79E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene52404 | 0.810854 | 9.37E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene52404 | 0.829313 | 5.52E-55 | -1.69E-46 |
| MS.gene049873 | MS.gene52404 | 0.813277 | 2.78E-51 | -1.69E-46 |
| MS.gene050414 | MS.gene52404 | 0.806706 | 7.22E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene52404 | 0.828798 | 7.36E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene52404 | 0.808947 | 2.41E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene52404 | 0.802744 | 4.85E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene52404 | 0.827507 | 1.51E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene52404 | 0.80971 | 1.65E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene52404 | 0.841505 | 4.56E-58 | -1.69E-46 |
| MS.gene050838 | MS.gene52404 | 0.827305 | 1.68E-54 | -1.69E-46 |
| MS.gene050901 | MS.gene52404 | 0.810468 | 1.14E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene52404 | 0.880415 | 5.60E-70 | -1.69E-46 |
| MS.gene050955 | MS.gene52404 | 0.866218 | 3.35E-65 | -1.69E-46 |
| MS.gene051003 | MS.gene52404 | 0.82588 | 3.68E-54 | -1.69E-46 |
| MS.gene051043 | MS.gene52404 | 0.806563 | 7.74E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene52404 | 0.878476 | 2.72E-69 | -1.69E-46 |
| MS.gene051343 | MS.gene52404 | 0.853798 | 1.88E-61 | -1.69E-46 |
| MS.gene05134 | MS.gene52404 | 0.820982 | 5.14E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene52404 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene52404 | 0.826243 | 3.02E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene52404 | 0.819531 | 1.11E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene52404 | 0.800052 | 1.73E-48 | -1.69E-46 |
| MS.gene051720 | MS.gene52404 | 0.808032 | 3.78E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene52404 | 0.805268 | 1.45E-49 | -1.69E-46 |
| MS.gene051791 | MS.gene52404 | 0.827182 | 1.80E-54 | -1.69E-46 |
| MS.gene051832 | MS.gene52404 | 0.817394 | 3.37E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene52404 | 0.804105 | 2.53E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene52404 | 0.843664 | 1.22E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene52404 | 0.834434 | 3.00E-56 | -1.69E-46 |
| MS.gene052072 | MS.gene52404 | 0.86137 | 1.08E-63 | -1.69E-46 |
| MS.gene052239 | MS.gene52404 | -0.826459 | 2.68E-54 | -1.69E-46 |
| MS.gene052335 | MS.gene52404 | 0.81515 | 1.07E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene52404 | 0.805155 | 1.53E-49 | -1.69E-46 |
| MS.gene052479 | MS.gene52404 | 0.819612 | 1.06E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene52404 | 0.80916 | 2.17E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene52404 | 0.813042 | 3.13E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene52404 | 0.847519 | 1.10E-59 | -1.69E-46 |
| MS.gene052793 | MS.gene52404 | 0.841256 | 5.31E-58 | -1.69E-46 |
| MS.gene052947 | MS.gene52404 | 0.845987 | 2.88E-59 | -1.69E-46 |
| MS.gene053122 | MS.gene52404 | 0.835627 | 1.50E-56 | -1.69E-46 |
| MS.gene053195 | MS.gene52404 | 0.810115 | 1.35E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene52404 | 0.829507 | 4.95E-55 | -1.69E-46 |
| MS.gene053272 | MS.gene52404 | -0.834026 | 3.80E-56 | -1.69E-46 |
| MS.gene053401 | MS.gene52404 | 0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene52404 | 0.829807 | 4.19E-55 | -1.69E-46 |
| MS.gene053599 | MS.gene52404 | 0.813072 | 3.08E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene52404 | 0.825674 | 4.12E-54 | -1.69E-46 |
| MS.gene053931 | MS.gene52404 | 0.816244 | 6.11E-52 | -1.69E-46 |
| MS.gene053995 | MS.gene52404 | 0.811149 | 8.09E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene52404 | 0.830011 | 3.73E-55 | -1.69E-46 |
| MS.gene054142 | MS.gene52404 | 0.859385 | 4.29E-63 | -1.69E-46 |
| MS.gene054403 | MS.gene52404 | 0.847636 | 1.02E-59 | -1.69E-46 |
| MS.gene054413 | MS.gene52404 | 0.819278 | 1.26E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene52404 | 0.811317 | 7.44E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene52404 | 0.822002 | 2.99E-53 | -1.69E-46 |
| MS.gene054709 | MS.gene52404 | 0.843601 | 1.27E-58 | -1.69E-46 |
| MS.gene055339 | MS.gene52404 | 0.825453 | 4.65E-54 | -1.69E-46 |
| MS.gene05548 | MS.gene52404 | 0.832374 | 9.80E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene52404 | 0.80425 | 2.36E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene52404 | 0.868811 | 4.95E-66 | -1.69E-46 |
| MS.gene055580 | MS.gene52404 | -0.803226 | 3.86E-49 | -1.69E-46 |
| MS.gene055694 | MS.gene52404 | 0.805034 | 1.62E-49 | -1.69E-46 |
| MS.gene055765 | MS.gene52404 | 0.837937 | 3.87E-57 | -1.69E-46 |
| MS.gene055841 | MS.gene52404 | 0.802217 | 6.23E-49 | -1.69E-46 |
| MS.gene056075 | MS.gene52404 | 0.812793 | 3.55E-51 | -1.69E-46 |
| MS.gene056082 | MS.gene52404 | 0.85001 | 2.24E-60 | -1.69E-46 |
| MS.gene056215 | MS.gene52404 | 0.831646 | 1.48E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene52404 | 0.826589 | 2.50E-54 | -1.69E-46 |
| MS.gene056677 | MS.gene52404 | 0.81135 | 7.32E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene52404 | 0.823661 | 1.23E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene52404 | 0.818781 | 1.64E-52 | -1.69E-46 |
| MS.gene05689 | MS.gene52404 | 0.80545 | 1.33E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene52404 | 0.819514 | 1.12E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene52404 | 0.902752 | 7.03E-79 | -1.69E-46 |
| MS.gene057208 | MS.gene52404 | 0.830726 | 2.50E-55 | -1.69E-46 |
| MS.gene057684 | MS.gene52404 | -0.817813 | 2.71E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene52404 | 0.872892 | 2.24E-67 | -1.69E-46 |
| MS.gene057705 | MS.gene52404 | 0.902327 | 1.09E-78 | -1.69E-46 |
| MS.gene05781 | MS.gene52404 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene058008 | MS.gene52404 | 0.831737 | 1.41E-55 | -1.69E-46 |
| MS.gene058009 | MS.gene52404 | 0.806487 | 8.03E-50 | -1.69E-46 |
| MS.gene058074 | MS.gene52404 | 0.826311 | 2.91E-54 | -1.69E-46 |
| MS.gene058149 | MS.gene52404 | 0.81923 | 1.30E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene52404 | 0.820239 | 7.62E-53 | -1.69E-46 |
| MS.gene058279 | MS.gene52404 | 0.801437 | 9.01E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene52404 | 0.82902 | 6.50E-55 | -1.69E-46 |
| MS.gene058783 | MS.gene52404 | 0.839885 | 1.21E-57 | -1.69E-46 |
| MS.gene058852 | MS.gene52404 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene05894 | MS.gene52404 | 0.816918 | 4.32E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene52404 | 0.857048 | 2.13E-62 | -1.69E-46 |
| MS.gene059227 | MS.gene52404 | 0.84928 | 3.58E-60 | -1.69E-46 |
| MS.gene059778 | MS.gene52404 | 0.827676 | 1.37E-54 | -1.69E-46 |
| MS.gene059802 | MS.gene52404 | 0.800808 | 1.21E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene52404 | -0.881365 | 2.55E-70 | -1.69E-46 |
| MS.gene059901 | MS.gene52404 | -0.806764 | 7.02E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene52404 | 0.80913 | 2.20E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene52404 | 0.819275 | 1.26E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene52404 | 0.846782 | 1.75E-59 | -1.69E-46 |
| MS.gene060429 | MS.gene52404 | 0.82406 | 9.91E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene52404 | 0.813992 | 1.93E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene52404 | 0.826637 | 2.43E-54 | -1.69E-46 |
| MS.gene060917 | MS.gene52404 | 0.825539 | 4.44E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene52404 | 0.856349 | 3.42E-62 | -1.69E-46 |
| MS.gene060937 | MS.gene52404 | 0.852186 | 5.44E-61 | -1.69E-46 |
| MS.gene061100 | MS.gene52404 | 0.845978 | 2.90E-59 | -1.69E-46 |
| MS.gene061160 | MS.gene52404 | 0.818042 | 2.41E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene52404 | 0.839034 | 2.02E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52404.t1 | MTR_2g436620 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 5.28e-118 | 330 |
| MS.gene52404.t1 | MTR_6g071090 | 87.500 | 160 | 20 | 0 | 1 | 160 | 1 | 160 | 1.08e-98 | 281 |
| MS.gene52404.t1 | MTR_2g436620 | 97.872 | 141 | 3 | 0 | 27 | 167 | 1 | 141 | 8.67e-98 | 278 |
| MS.gene52404.t1 | MTR_1g083380 | 83.333 | 168 | 27 | 1 | 1 | 167 | 1 | 168 | 1.83e-94 | 271 |
| MS.gene52404.t1 | MTR_1g083350 | 82.738 | 168 | 28 | 1 | 1 | 167 | 1 | 168 | 8.41e-94 | 269 |
| MS.gene52404.t1 | MTR_1g083340 | 76.774 | 155 | 25 | 2 | 1 | 144 | 1 | 155 | 9.50e-74 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52404.t1 | AT3G16640 | 75.595 | 168 | 40 | 1 | 1 | 167 | 1 | 168 | 9.50e-92 | 264 |
| MS.gene52404.t1 | AT3G05540 | 79.167 | 168 | 34 | 1 | 1 | 167 | 1 | 168 | 3.10e-87 | 253 |
Find 44 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACAAGAAGCAGTTTCT+TGG | 0.278246 | 2.3:-54754721 | MS.gene52404:CDS |
| TTGTTTCTCTGCATCTAGTT+TGG | 0.281317 | 2.3:+54754666 | None:intergenic |
| CCATTCTCAATTTCCTTGTA+TGG | 0.282615 | 2.3:+54755115 | None:intergenic |
| CTACTTTGCTTATGCTTTGA+AGG | 0.304287 | 2.3:-54754269 | MS.gene52404:CDS |
| TGTTTCTCTGCATCTAGTTT+GGG | 0.318203 | 2.3:+54754667 | None:intergenic |
| GAGCTTGCCGAGCAAGTATT+TGG | 0.326857 | 2.3:+54754612 | None:intergenic |
| GTTTACCAGGATCTCCTTAC+CGG | 0.366225 | 2.3:-54756029 | MS.gene52404:intron |
| TGGAATGTTGTGGGAGGTTG+AGG | 0.377236 | 2.3:-54755095 | MS.gene52404:CDS |
| TGGTGTGCAGTGGGTTACTA+AGG | 0.380033 | 2.3:-54754982 | MS.gene52404:intron |
| GAATTCTTGTGCAGCTTTGT+TGG | 0.382904 | 2.3:-54754364 | MS.gene52404:intron |
| TGTTGACGTATTCAGACTTC+AGG | 0.392904 | 2.3:-54754868 | MS.gene52404:intron |
| AGTTTCTTGGCTTTGTTAAG+AGG | 0.407714 | 2.3:-54754708 | MS.gene52404:CDS |
| TTCAATCATGTTGGTTTACC+AGG | 0.411320 | 2.3:-54756042 | None:intergenic |
| AACTGCTTCTTGTCAAAAGC+AGG | 0.440893 | 2.3:+54754727 | None:intergenic |
| TGTTGATGACACAGCTGTTA+AGG | 0.453047 | 2.3:-54754901 | MS.gene52404:CDS |
| CATTCTCAATTTCCTTGTAT+GGG | 0.457372 | 2.3:+54755116 | None:intergenic |
| TAAGCAAAGTAGAGAAATGT+TGG | 0.475842 | 2.3:+54754280 | None:intergenic |
| AGAGGTTCACTTACAATTGA+AGG | 0.484964 | 2.3:+54754584 | None:intergenic |
| ATTTACCGGTAAGGAGATCC+TGG | 0.491049 | 2.3:+54756024 | None:intergenic |
| CTGTTTAAGAAGCACATTGA+GGG | 0.491843 | 2.3:-54754640 | MS.gene52404:CDS |
| GTTGTGGGAGGTTGAGGGAA+AGG | 0.495448 | 2.3:-54755089 | MS.gene52404:intron |
| CCATACAAGGAAATTGAGAA+TGG | 0.509500 | 2.3:-54755115 | MS.gene52404:CDS |
| TGCTGAAGGTGGGGAAGATG+AGG | 0.510874 | 2.3:-54754925 | MS.gene52404:CDS |
| GGTGTGCAGTGGGTTACTAA+GGG | 0.531247 | 2.3:-54754981 | MS.gene52404:intron |
| CTTGGTCTTCGCCTACTACA+AGG | 0.543755 | 2.3:-54754317 | MS.gene52404:CDS |
| AGAAGTTAGATTTACCGGTA+AGG | 0.548047 | 2.3:+54756015 | None:intergenic |
| GGTGCTAACGCTTCTGCTGA+AGG | 0.551924 | 2.3:-54754939 | MS.gene52404:CDS |
| GTCAGACTCTTACCCATACA+AGG | 0.558314 | 2.3:-54755128 | MS.gene52404:CDS |
| AGCAGCACCATCCTTGTAGT+AGG | 0.558714 | 2.3:+54754306 | None:intergenic |
| CTAACGCTTCTGCTGAAGGT+GGG | 0.564433 | 2.3:-54754935 | MS.gene52404:CDS |
| GGAATGTTGTGGGAGGTTGA+GGG | 0.570757 | 2.3:-54755094 | MS.gene52404:CDS |
| GCTAACGCTTCTGCTGAAGG+TGG | 0.574811 | 2.3:-54754936 | MS.gene52404:CDS |
| CATGCATGATGATGGTAGCT+TGG | 0.577740 | 2.3:-54754335 | MS.gene52404:CDS |
| ATACTTGCTCGGCAAGCTCA+AGG | 0.590353 | 2.3:-54754608 | MS.gene52404:CDS |
| TAACGCTTCTGCTGAAGGTG+GGG | 0.592268 | 2.3:-54754934 | MS.gene52404:CDS |
| AATTGAGAATGGAATGTTGT+GGG | 0.596224 | 2.3:-54755104 | MS.gene52404:CDS |
| GGAGCAACCAAATACTTGCT+CGG | 0.601945 | 2.3:-54754619 | MS.gene52404:CDS |
| GCTGTTTAAGAAGCACATTG+AGG | 0.605157 | 2.3:-54754641 | MS.gene52404:CDS |
| GTCTTCGCCTACTACAAGGA+TGG | 0.605413 | 2.3:-54754313 | MS.gene52404:CDS |
| GGAGTTGTTGAAGTAGACAT+TGG | 0.611147 | 2.3:-54754960 | MS.gene52404:CDS |
| GGTGAGAGCATGCATGATGA+TGG | 0.613806 | 2.3:-54754343 | MS.gene52404:CDS |
| GCTGAAGGTGGGGAAGATGA+GGG | 0.626588 | 2.3:-54754924 | MS.gene52404:CDS |
| TGAGAATGGAATGTTGTGGG+AGG | 0.663472 | 2.3:-54755101 | MS.gene52404:CDS |
| AAATTGAGAATGGAATGTTG+TGG | 0.718062 | 2.3:-54755105 | MS.gene52404:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAACAATATAACAG+AGG | + | chr2.3:54754665-54754684 | None:intergenic | 15.0% |
| !! | AGATCTAATAATAAAAAAAG+CGG | + | chr2.3:54754326-54754345 | None:intergenic | 15.0% |
| !! | ATATAAAACAATATAACAGA+GGG | + | chr2.3:54754664-54754683 | None:intergenic | 15.0% |
| !! | TTTCAAAAAATACTATATCT+GGG | + | chr2.3:54754497-54754516 | None:intergenic | 15.0% |
| !!! | ATATCAATAAGTTCAAATTT+TGG | - | chr2.3:54754701-54754720 | MS.gene52404:CDS | 15.0% |
| !!! | TTGTTGTTATTTTAATTCAT+TGG | - | chr2.3:54754392-54754411 | MS.gene52404:intron | 15.0% |
| !!! | TTTTCAAAAAATACTATATC+TGG | + | chr2.3:54754498-54754517 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTGAAATATGTTA+TGG | - | chr2.3:54755076-54755095 | MS.gene52404:intron | 15.0% |
| !! | AATTAAAAATGTATCATCCA+AGG | + | chr2.3:54755475-54755494 | None:intergenic | 20.0% |
| !! | CAATAAGTAAAAGTCATAAT+TGG | + | chr2.3:54754364-54754383 | None:intergenic | 20.0% |
| !!! | GGTTTCTAGATTTTAAAAAT+CGG | + | chr2.3:54754564-54754583 | None:intergenic | 20.0% |
| !!! | TGATTGTAATATTTGTCTTT+TGG | - | chr2.3:54755870-54755889 | MS.gene52404:intron | 20.0% |
| !!! | TTATTTTAATTCATTGGATC+TGG | - | chr2.3:54754398-54754417 | MS.gene52404:intron | 20.0% |
| ! | TGCTGCACAAATAAAAATAA+TGG | + | chr2.3:54754585-54754604 | None:intergenic | 25.0% |
| !! | AAATCTAAGATCTGACTATT+GGG | + | chr2.3:54754934-54754953 | None:intergenic | 25.0% |
| !! | AGCTAAAAACTATTTGCTTT+TGG | - | chr2.3:54755288-54755307 | MS.gene52404:intron | 25.0% |
| !! | CGATACATATCATATTTTGT+AGG | - | chr2.3:54755127-54755146 | MS.gene52404:CDS | 25.0% |
| !! | TGTTTGAAATATGTTATGGT+TGG | - | chr2.3:54755080-54755099 | MS.gene52404:intron | 25.0% |
| !! | TTGAGGGAATTTTATGATTA+CGG | - | chr2.3:54754730-54754749 | MS.gene52404:CDS | 25.0% |
| !!! | TCTGAATTAGTTCTAATAGA+GGG | - | chr2.3:54754789-54754808 | MS.gene52404:intron | 25.0% |
| !!! | TTCTGAATTAGTTCTAATAG+AGG | - | chr2.3:54754788-54754807 | MS.gene52404:intron | 25.0% |
| !!! | TTTTGTTGTGTTGACTTTAT+AGG | - | chr2.3:54755535-54755554 | MS.gene52404:intron | 25.0% |
| AAATTGAGAATGGAATGTTG+TGG | - | chr2.3:54755185-54755204 | MS.gene52404:intron | 30.0% | |
| AATTGAGAATGGAATGTTGT+GGG | - | chr2.3:54755186-54755205 | MS.gene52404:intron | 30.0% | |
| ACTGCATCATATTAACAAAC+AGG | + | chr2.3:54754836-54754855 | None:intergenic | 30.0% | |
| ATGAGAGAAGTTAGATTTAC+CGG | + | chr2.3:54754283-54754302 | None:intergenic | 30.0% | |
| CATTCTCAATTTCCTTGTAT+GGG | + | chr2.3:54755177-54755196 | None:intergenic | 30.0% | |
| GTTCTAATAGAGGGATAATT+CGG | - | chr2.3:54754798-54754817 | MS.gene52404:intron | 30.0% | |
| TAAGCAAAGTAGAGAAATGT+TGG | + | chr2.3:54756013-54756032 | None:intergenic | 30.0% | |
| TATCATCCAAGGATATAAAG+AGG | + | chr2.3:54755464-54755483 | None:intergenic | 30.0% | |
| TTCTAATAGAGGGATAATTC+GGG | - | chr2.3:54754799-54754818 | MS.gene52404:intron | 30.0% | |
| ! | CAAATCTAAGATCTGACTAT+TGG | + | chr2.3:54754935-54754954 | None:intergenic | 30.0% |
| ! | CAAATTTTGGATGAGATTGA+GGG | - | chr2.3:54754714-54754733 | MS.gene52404:CDS | 30.0% |
| ! | TCAAATTTTGGATGAGATTG+AGG | - | chr2.3:54754713-54754732 | MS.gene52404:CDS | 30.0% |
| ! | TGTTTGTTAATATGATGCAG+TGG | - | chr2.3:54754835-54754854 | MS.gene52404:intron | 30.0% |
| !! | AATTACACTCTGAAATCAAG+TGG | + | chr2.3:54755514-54755533 | None:intergenic | 30.0% |
| !! | TTTTATTTGTGCAGCATAGT+AGG | - | chr2.3:54754589-54754608 | MS.gene52404:intron | 30.0% |
| ACGTAGTTATGTTACACTTG+GGG | - | chr2.3:54755259-54755278 | MS.gene52404:intron | 35.0% | |
| AGAAGTTAGATTTACCGGTA+AGG | + | chr2.3:54754278-54754297 | None:intergenic | 35.0% | |
| AGAGGTTCACTTACAATTGA+AGG | + | chr2.3:54755709-54755728 | None:intergenic | 35.0% | |
| ATATGTTATGGTTGGATGCT+TGG | - | chr2.3:54755088-54755107 | MS.gene52404:intron | 35.0% | |
| CAAACACCTCTTTATATCCT+TGG | - | chr2.3:54755455-54755474 | MS.gene52404:intron | 35.0% | |
| CCATACAAGGAAATTGAGAA+TGG | - | chr2.3:54755175-54755194 | MS.gene52404:intron | 35.0% | |
| CCATTCTCAATTTCCTTGTA+TGG | + | chr2.3:54755178-54755197 | None:intergenic | 35.0% | |
| CTACTTTGCTTATGCTTTGA+AGG | - | chr2.3:54756021-54756040 | MS.gene52404:intron | 35.0% | |
| GACGTAGTTATGTTACACTT+GGG | - | chr2.3:54755258-54755277 | MS.gene52404:intron | 35.0% | |
| TAACCAATAAAACAGAGCAC+AGG | + | chr2.3:54754639-54754658 | None:intergenic | 35.0% | |
| TCGAACCATAGGATTAAGAT+CGG | - | chr2.3:54754872-54754891 | MS.gene52404:CDS | 35.0% | |
| TCTAATAGAGGGATAATTCG+GGG | - | chr2.3:54754800-54754819 | MS.gene52404:intron | 35.0% | |
| TCTATCATGCACATTCAAGA+AGG | - | chr2.3:54755726-54755745 | MS.gene52404:intron | 35.0% | |
| TGACGTAGTTATGTTACACT+TGG | - | chr2.3:54755257-54755276 | MS.gene52404:intron | 35.0% | |
| TTCTTGAATGTGCATGATAG+AGG | + | chr2.3:54755727-54755746 | None:intergenic | 35.0% | |
| TTTGACAAGAAGCAGTTTCT+TGG | - | chr2.3:54755569-54755588 | MS.gene52404:intron | 35.0% | |
| ! | CATATTCTGATTTTCTGTGC+TGG | - | chr2.3:54754462-54754481 | MS.gene52404:intron | 35.0% |
| ! | CTGTTTAAGAAGCACATTGA+GGG | - | chr2.3:54755650-54755669 | MS.gene52404:intron | 35.0% |
| ! | TGTTTCTCTGCATCTAGTTT+GGG | + | chr2.3:54755626-54755645 | None:intergenic | 35.0% |
| ! | TTGTTTCTCTGCATCTAGTT+TGG | + | chr2.3:54755627-54755646 | None:intergenic | 35.0% |
| !! | AGTTTCTTGGCTTTGTTAAG+AGG | - | chr2.3:54755582-54755601 | MS.gene52404:intron | 35.0% |
| !! | CAAGGATATAAAGAGGTGTT+TGG | + | chr2.3:54755457-54755476 | None:intergenic | 35.0% |
| AAAGCGGAAAATTGAAGCGA+TGG | + | chr2.3:54754310-54754329 | None:intergenic | 40.0% | |
| AACTGCTTCTTGTCAAAAGC+AGG | + | chr2.3:54755566-54755585 | None:intergenic | 40.0% | |
| ACCATAGGATTAAGATCGGA+TGG | - | chr2.3:54754876-54754895 | MS.gene52404:CDS | 40.0% | |
| AGTTGAGCAATTCGAACCAT+AGG | - | chr2.3:54754861-54754880 | MS.gene52404:intron | 40.0% | |
| CGATCTCAATCCAAACGAAT+TGG | - | chr2.3:54754957-54754976 | MS.gene52404:CDS | 40.0% | |
| CTCAATCCAAACGAATTGGT+TGG | - | chr2.3:54754961-54754980 | MS.gene52404:CDS | 40.0% | |
| GGAGTTGTTGAAGTAGACAT+TGG | - | chr2.3:54755330-54755349 | MS.gene52404:intron | 40.0% | |
| TGTTGACGTATTCAGACTTC+AGG | - | chr2.3:54755422-54755441 | MS.gene52404:intron | 40.0% | |
| ! | ACGTATTCAGACTTCAGGTT+AGG | - | chr2.3:54755427-54755446 | MS.gene52404:intron | 40.0% |
| ! | GAATTCTTGTGCAGCTTTGT+TGG | - | chr2.3:54755926-54755945 | MS.gene52404:intron | 40.0% |
| ! | GCTGTTTAAGAAGCACATTG+AGG | - | chr2.3:54755649-54755668 | MS.gene52404:intron | 40.0% |
| ! | TTGCCTGTGCTCTGTTTTAT+TGG | - | chr2.3:54754633-54754652 | MS.gene52404:CDS | 40.0% |
| !! | ATTTGCTTTTGGTGTGCAGT+GGG | - | chr2.3:54755299-54755318 | MS.gene52404:intron | 40.0% |
| !! | TATTTGCTTTTGGTGTGCAG+TGG | - | chr2.3:54755298-54755317 | MS.gene52404:intron | 40.0% |
| !! | TGTTGATGACACAGCTGTTA+AGG | - | chr2.3:54755389-54755408 | MS.gene52404:intron | 40.0% |
| ATTTACCGGTAAGGAGATCC+TGG | + | chr2.3:54754269-54754288 | None:intergenic | 45.0% | |
| CTGTAGCCAACCAATTCGTT+TGG | + | chr2.3:54754970-54754989 | None:intergenic | 45.0% | |
| GCCATCCGATCTTAATCCTA+TGG | + | chr2.3:54754880-54754899 | None:intergenic | 45.0% | |
| GGAGCAACCAAATACTTGCT+CGG | - | chr2.3:54755671-54755690 | MS.gene52404:intron | 45.0% | |
| GTCAGACTCTTACCCATACA+AGG | - | chr2.3:54755162-54755181 | MS.gene52404:intron | 45.0% | |
| GTTTACCAGGATCTCCTTAC+CGG | - | chr2.3:54754261-54754280 | MS.gene52404:CDS | 45.0% | |
| TGAGAATGGAATGTTGTGGG+AGG | - | chr2.3:54755189-54755208 | MS.gene52404:intron | 45.0% | |
| ! | CAAACGAATTGGTTGGCTAC+AGG | - | chr2.3:54754968-54754987 | MS.gene52404:CDS | 45.0% |
| !! | CATGCATGATGATGGTAGCT+TGG | - | chr2.3:54755955-54755974 | MS.gene52404:intron | 45.0% |
| !! | AAAAAATAAAATAAAAAACA+TGG | + | chr2.3:54755045-54755064 | None:intergenic | 5.0% |
| AGCAGCACCATCCTTGTAGT+AGG | + | chr2.3:54755987-54756006 | None:intergenic | 50.0% | |
| ATACTTGCTCGGCAAGCTCA+AGG | - | chr2.3:54755682-54755701 | MS.gene52404:intron | 50.0% | |
| CTAACGCTTCTGCTGAAGGT+GGG | - | chr2.3:54755355-54755374 | MS.gene52404:intron | 50.0% | |
| GAGCTTGCCGAGCAAGTATT+TGG | + | chr2.3:54755681-54755700 | None:intergenic | 50.0% | |
| GGAATGTTGTGGGAGGTTGA+GGG | - | chr2.3:54755196-54755215 | MS.gene52404:intron | 50.0% | |
| GTCTTCGCCTACTACAAGGA+TGG | - | chr2.3:54755977-54755996 | MS.gene52404:intron | 50.0% | |
| TAACGCTTCTGCTGAAGGTG+GGG | - | chr2.3:54755356-54755375 | MS.gene52404:intron | 50.0% | |
| TGGAATGTTGTGGGAGGTTG+AGG | - | chr2.3:54755195-54755214 | MS.gene52404:intron | 50.0% | |
| ! | CTTGGTCTTCGCCTACTACA+AGG | - | chr2.3:54755973-54755992 | MS.gene52404:intron | 50.0% |
| ! | GGTGAGAGCATGCATGATGA+TGG | - | chr2.3:54755947-54755966 | MS.gene52404:intron | 50.0% |
| !! | GGTGTGCAGTGGGTTACTAA+GGG | - | chr2.3:54755309-54755328 | MS.gene52404:intron | 50.0% |
| !! | TGGTGTGCAGTGGGTTACTA+AGG | - | chr2.3:54755308-54755327 | MS.gene52404:intron | 50.0% |
| GCTAACGCTTCTGCTGAAGG+TGG | - | chr2.3:54755354-54755373 | MS.gene52404:intron | 55.0% | |
| GCTGAAGGTGGGGAAGATGA+GGG | - | chr2.3:54755366-54755385 | MS.gene52404:intron | 55.0% | |
| GGTGCTAACGCTTCTGCTGA+AGG | - | chr2.3:54755351-54755370 | MS.gene52404:intron | 55.0% | |
| GTTGTGGGAGGTTGAGGGAA+AGG | - | chr2.3:54755201-54755220 | MS.gene52404:intron | 55.0% | |
| TGCTGAAGGTGGGGAAGATG+AGG | - | chr2.3:54755365-54755384 | MS.gene52404:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 54754255 | 54756057 | 54754255 | ID=MS.gene52404 |
| chr2.3 | mRNA | 54754255 | 54756057 | 54754255 | ID=MS.gene52404.t1;Parent=MS.gene52404 |
| chr2.3 | exon | 54756030 | 54756057 | 54756030 | ID=MS.gene52404.t1.exon1;Parent=MS.gene52404.t1 |
| chr2.3 | CDS | 54756030 | 54756057 | 54756030 | ID=cds.MS.gene52404.t1;Parent=MS.gene52404.t1 |
| chr2.3 | exon | 54755090 | 54755163 | 54755090 | ID=MS.gene52404.t1.exon2;Parent=MS.gene52404.t1 |
| chr2.3 | CDS | 54755090 | 54755163 | 54755090 | ID=cds.MS.gene52404.t1;Parent=MS.gene52404.t1 |
| chr2.3 | exon | 54754869 | 54754994 | 54754869 | ID=MS.gene52404.t1.exon3;Parent=MS.gene52404.t1 |
| chr2.3 | CDS | 54754869 | 54754994 | 54754869 | ID=cds.MS.gene52404.t1;Parent=MS.gene52404.t1 |
| chr2.3 | exon | 54754598 | 54754755 | 54754598 | ID=MS.gene52404.t1.exon4;Parent=MS.gene52404.t1 |
| chr2.3 | CDS | 54754598 | 54754755 | 54754598 | ID=cds.MS.gene52404.t1;Parent=MS.gene52404.t1 |
| chr2.3 | exon | 54754255 | 54754372 | 54754255 | ID=MS.gene52404.t1.exon5;Parent=MS.gene52404.t1 |
| chr2.3 | CDS | 54754255 | 54754372 | 54754255 | ID=cds.MS.gene52404.t1;Parent=MS.gene52404.t1 |
| Gene Sequence |
| Protein sequence |
