Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063327.t1 | XP_003620792.1 | 93.2 | 132 | 4 | 1 | 1 | 132 | 35 | 161 | 4.00E-62 | 247.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063327.t1 | P82412 | 67.7 | 133 | 41 | 1 | 2 | 132 | 47 | 179 | 8.5e-45 | 181.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063327.t1 | B7FMM7 | 93.2 | 132 | 4 | 1 | 1 | 132 | 35 | 161 | 2.9e-62 | 247.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene063327 | 0.877071 | 8.43E-69 | -1.69E-46 |
| MS.gene049171 | MS.gene063327 | 0.814074 | 1.85E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene063327 | 0.827312 | 1.68E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene063327 | 0.839758 | 1.31E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene063327 | 0.830149 | 3.46E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene063327 | 0.810246 | 1.27E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene063327 | 0.833646 | 4.73E-56 | -1.69E-46 |
| MS.gene049427 | MS.gene063327 | 0.839938 | 1.17E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene063327 | 0.82783 | 1.26E-54 | -1.69E-46 |
| MS.gene049615 | MS.gene063327 | 0.826588 | 2.50E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene063327 | 0.810596 | 1.07E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene063327 | 0.864373 | 1.27E-64 | -1.69E-46 |
| MS.gene050076 | MS.gene063327 | 0.813115 | 3.01E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene063327 | 0.841179 | 5.56E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene063327 | 0.812068 | 5.11E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene063327 | 0.813401 | 2.61E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene063327 | 0.824948 | 6.12E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene063327 | 0.806732 | 7.13E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene063327 | 0.829046 | 6.41E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene063327 | 0.830178 | 3.40E-55 | -1.69E-46 |
| MS.gene050747 | MS.gene063327 | 0.836735 | 7.86E-57 | -1.69E-46 |
| MS.gene050767 | MS.gene063327 | 0.865091 | 7.59E-65 | -1.69E-46 |
| MS.gene050770 | MS.gene063327 | 0.866193 | 3.41E-65 | -1.69E-46 |
| MS.gene050772 | MS.gene063327 | 0.84877 | 4.96E-60 | -1.69E-46 |
| MS.gene050781 | MS.gene063327 | 0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene050783 | MS.gene063327 | 0.834143 | 3.55E-56 | -1.69E-46 |
| MS.gene050812 | MS.gene063327 | 0.813288 | 2.76E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene063327 | 0.817357 | 3.44E-52 | -1.69E-46 |
| MS.gene05100 | MS.gene063327 | 0.865244 | 6.79E-65 | -1.69E-46 |
| MS.gene05101 | MS.gene063327 | 0.824918 | 6.22E-54 | -1.69E-46 |
| MS.gene05105 | MS.gene063327 | 0.838687 | 2.48E-57 | -1.69E-46 |
| MS.gene051228 | MS.gene063327 | 0.808982 | 2.37E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene063327 | 0.853072 | 3.04E-61 | -1.69E-46 |
| MS.gene051471 | MS.gene063327 | 0.808324 | 3.28E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene063327 | 0.90183 | 1.80E-78 | -1.69E-46 |
| MS.gene051692 | MS.gene063327 | 0.813196 | 2.89E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene063327 | 0.833117 | 6.41E-56 | -1.69E-46 |
| MS.gene051858 | MS.gene063327 | 0.82808 | 1.10E-54 | -1.69E-46 |
| MS.gene051877 | MS.gene063327 | 0.819697 | 1.01E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene063327 | 0.844583 | 6.91E-59 | -1.69E-46 |
| MS.gene052271 | MS.gene063327 | 0.835355 | 1.76E-56 | -1.69E-46 |
| MS.gene052290 | MS.gene063327 | 0.812343 | 4.45E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene063327 | 0.830993 | 2.15E-55 | -1.69E-46 |
| MS.gene052322 | MS.gene063327 | 0.843353 | 1.48E-58 | -1.69E-46 |
| MS.gene052326 | MS.gene063327 | 0.829263 | 5.68E-55 | -1.69E-46 |
| MS.gene052379 | MS.gene063327 | 0.808739 | 2.67E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene063327 | 0.845376 | 4.22E-59 | -1.69E-46 |
| MS.gene052484 | MS.gene063327 | 0.800023 | 1.75E-48 | -1.69E-46 |
| MS.gene052485 | MS.gene063327 | 0.802646 | 5.08E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene063327 | 0.811751 | 5.98E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene063327 | 0.803765 | 2.98E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene063327 | 0.844793 | 6.07E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene063327 | 0.858049 | 1.08E-62 | -1.69E-46 |
| MS.gene053104 | MS.gene063327 | 0.846352 | 2.29E-59 | -1.69E-46 |
| MS.gene053107 | MS.gene063327 | 0.814647 | 1.39E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene063327 | 0.820136 | 8.05E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene063327 | 0.83702 | 6.65E-57 | -1.69E-46 |
| MS.gene053286 | MS.gene063327 | 0.825322 | 4.99E-54 | -1.69E-46 |
| MS.gene053322 | MS.gene063327 | 0.894748 | 1.84E-75 | -1.69E-46 |
| MS.gene053436 | MS.gene063327 | 0.821844 | 3.25E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene063327 | 0.807506 | 4.89E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene063327 | 0.856188 | 3.81E-62 | -1.69E-46 |
| MS.gene053813 | MS.gene063327 | 0.807382 | 5.19E-50 | -1.69E-46 |
| MS.gene053915 | MS.gene063327 | 0.800339 | 1.51E-48 | -1.69E-46 |
| MS.gene053916 | MS.gene063327 | 0.837555 | 4.85E-57 | -1.69E-46 |
| MS.gene054123 | MS.gene063327 | 0.834657 | 2.64E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene063327 | 0.852188 | 5.44E-61 | -1.69E-46 |
| MS.gene054595 | MS.gene063327 | 0.808601 | 2.86E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene063327 | 0.815119 | 1.09E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene063327 | 0.831407 | 1.70E-55 | -1.69E-46 |
| MS.gene054802 | MS.gene063327 | 0.872387 | 3.31E-67 | -1.69E-46 |
| MS.gene054803 | MS.gene063327 | 0.86578 | 4.61E-65 | -1.69E-46 |
| MS.gene054804 | MS.gene063327 | 0.872472 | 3.10E-67 | -1.69E-46 |
| MS.gene054927 | MS.gene063327 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene054955 | MS.gene063327 | 0.829533 | 4.88E-55 | -1.69E-46 |
| MS.gene05505 | MS.gene063327 | 0.855274 | 7.04E-62 | -1.69E-46 |
| MS.gene055116 | MS.gene063327 | 0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene063327 | 0.815907 | 7.27E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene063327 | 0.827859 | 1.24E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene063327 | 0.803783 | 2.96E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene063327 | 0.81991 | 9.06E-53 | -1.69E-46 |
| MS.gene055397 | MS.gene063327 | 0.860532 | 1.94E-63 | -1.69E-46 |
| MS.gene055412 | MS.gene063327 | 0.820536 | 6.51E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene063327 | 0.804991 | 1.66E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene063327 | 0.866525 | 2.67E-65 | -1.69E-46 |
| MS.gene055502 | MS.gene063327 | 0.80234 | 5.88E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene063327 | 0.804233 | 2.38E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene063327 | 0.826361 | 2.83E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene063327 | 0.822643 | 2.12E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene063327 | 0.847314 | 1.25E-59 | -1.69E-46 |
| MS.gene055941 | MS.gene063327 | 0.834215 | 3.41E-56 | -1.69E-46 |
| MS.gene05602 | MS.gene063327 | 0.813962 | 1.96E-51 | -1.69E-46 |
| MS.gene056083 | MS.gene063327 | 0.829915 | 3.94E-55 | -1.69E-46 |
| MS.gene056374 | MS.gene063327 | 0.837392 | 5.34E-57 | -1.69E-46 |
| MS.gene056407 | MS.gene063327 | 0.846208 | 2.51E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene063327 | 0.80119 | 1.01E-48 | -1.69E-46 |
| MS.gene05664 | MS.gene063327 | 0.832271 | 1.04E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene063327 | 0.817586 | 3.05E-52 | -1.69E-46 |
| MS.gene05666 | MS.gene063327 | 0.807053 | 6.10E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene063327 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene063327 | 0.846287 | 2.39E-59 | -1.69E-46 |
| MS.gene057123 | MS.gene063327 | 0.837275 | 5.72E-57 | -1.69E-46 |
| MS.gene057129 | MS.gene063327 | 0.879271 | 1.43E-69 | -1.69E-46 |
| MS.gene057146 | MS.gene063327 | 0.854261 | 1.38E-61 | -1.69E-46 |
| MS.gene057295 | MS.gene063327 | 0.860725 | 1.69E-63 | -1.69E-46 |
| MS.gene057331 | MS.gene063327 | 0.810898 | 9.17E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene063327 | 0.803842 | 2.87E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene063327 | 0.878099 | 3.69E-69 | -1.69E-46 |
| MS.gene057734 | MS.gene063327 | 0.800019 | 1.75E-48 | -1.69E-46 |
| MS.gene058006 | MS.gene063327 | 0.819999 | 8.65E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene063327 | 0.871324 | 7.45E-67 | -1.69E-46 |
| MS.gene058293 | MS.gene063327 | 0.87992 | 8.40E-70 | -1.69E-46 |
| MS.gene058323 | MS.gene063327 | 0.850408 | 1.73E-60 | -1.69E-46 |
| MS.gene058419 | MS.gene063327 | 0.831651 | 1.48E-55 | -1.69E-46 |
| MS.gene058544 | MS.gene063327 | 0.805238 | 1.47E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene063327 | 0.872005 | 4.43E-67 | -1.69E-46 |
| MS.gene058723 | MS.gene063327 | 0.810918 | 9.08E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene063327 | 0.808336 | 3.26E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene063327 | 0.803599 | 3.23E-49 | -1.69E-46 |
| MS.gene058993 | MS.gene063327 | 0.841787 | 3.84E-58 | -1.69E-46 |
| MS.gene05934 | MS.gene063327 | 0.831797 | 1.36E-55 | -1.69E-46 |
| MS.gene059536 | MS.gene063327 | 0.869625 | 2.69E-66 | -1.69E-46 |
| MS.gene059597 | MS.gene063327 | 0.806814 | 6.85E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene063327 | 0.830254 | 3.26E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene063327 | 0.81676 | 4.68E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene063327 | 0.828544 | 8.47E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene063327 | 0.815902 | 7.29E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene063327 | 0.82536 | 4.89E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene063327 | 0.848848 | 4.72E-60 | -1.69E-46 |
| MS.gene059801 | MS.gene063327 | 0.812162 | 4.87E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene063327 | 0.831442 | 1.67E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene063327 | 0.891821 | 2.80E-74 | -1.69E-46 |
| MS.gene060193 | MS.gene063327 | 0.853997 | 1.65E-61 | -1.69E-46 |
| MS.gene060403 | MS.gene063327 | 0.822998 | 1.75E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene063327 | 0.843982 | 1.00E-58 | -1.69E-46 |
| MS.gene060818 | MS.gene063327 | 0.823676 | 1.22E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene063327 | 0.808291 | 3.33E-50 | -1.69E-46 |
| MS.gene06090 | MS.gene063327 | 0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene063327 | 0.830798 | 2.40E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene063327 | 0.839327 | 1.69E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene063327 | 0.85184 | 6.83E-61 | -1.69E-46 |
| MS.gene061171 | MS.gene063327 | 0.815843 | 7.51E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene063327 | 0.905348 | 4.72E-80 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063327.t1 | MTR_6g090520 | 93.182 | 132 | 4 | 1 | 1 | 132 | 35 | 161 | 3.11e-86 | 248 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063327.t1 | AT1G68590 | 84.444 | 90 | 14 | 0 | 43 | 132 | 76 | 165 | 3.25e-55 | 170 |
| MS.gene063327.t1 | AT1G68590 | 82.222 | 90 | 16 | 0 | 43 | 132 | 73 | 162 | 2.61e-54 | 168 |
| MS.gene063327.t1 | AT5G15760 | 70.588 | 102 | 30 | 0 | 30 | 131 | 82 | 183 | 3.07e-50 | 158 |
Find 36 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTAAGCCCTTATTACTTT+TGG | 0.215786 | 6.1:-78369993 | MS.gene063327:CDS |
| TTCCTTGGCCAAAAGTAATA+AGG | 0.216981 | 6.1:+78369985 | None:intergenic |
| GACTCGTGTTGAAGTTCATT+TGG | 0.338552 | 6.1:-78370074 | MS.gene063327:CDS |
| TCCTTGGCCAAAAGTAATAA+GGG | 0.369106 | 6.1:+78369986 | None:intergenic |
| CAAAAGTAATAAGGGCTTAG+AGG | 0.406041 | 6.1:+78369994 | None:intergenic |
| TCTTCCCAAGCATCTTTCCT+TGG | 0.419427 | 6.1:+78369970 | None:intergenic |
| CCACTGATATTATCAATTTG+TGG | 0.436998 | 6.1:-78369879 | MS.gene063327:CDS |
| CGTGTTGAAGTTCATTTGGA+TGG | 0.444833 | 6.1:-78370070 | MS.gene063327:CDS |
| TGAGGTGGAGGTTGAAGAGA+AGG | 0.448959 | 6.1:+78371487 | None:intergenic |
| ATGGAGAAGAACATCGGTAT+TGG | 0.450928 | 6.1:-78370051 | MS.gene063327:CDS |
| ACGAGTCTTGGTTTGTCTGT+TGG | 0.451057 | 6.1:+78370090 | None:intergenic |
| TCAACCTCCACCTCAATCTC+AGG | 0.453824 | 6.1:-78371479 | MS.gene063327:intron |
| ATGAACTTCAACACGAGTCT+TGG | 0.461392 | 6.1:+78370078 | None:intergenic |
| TTGGCCAAGGAAAGATGCTT+GGG | 0.477445 | 6.1:-78369974 | MS.gene063327:CDS |
| TTCCATGGCCAGGTATCAAT+TGG | 0.480682 | 6.1:+78370022 | None:intergenic |
| TTTGGCCAAGGAAAGATGCT+TGG | 0.483605 | 6.1:-78369975 | MS.gene063327:CDS |
| GGCGGTAACTTGTCCTCCTA+AGG | 0.511225 | 6.1:-78369847 | None:intergenic |
| AGAACCTGAGATTGAGGTGG+AGG | 0.523452 | 6.1:+78371475 | None:intergenic |
| TGGAGGTTGAAGAGAAGGAG+AGG | 0.528382 | 6.1:+78371492 | None:intergenic |
| AGAGGAATGGTTCCATGGCC+AGG | 0.528465 | 6.1:+78370012 | None:intergenic |
| AGAGATAGAACCTGAGATTG+AGG | 0.534734 | 6.1:+78371469 | None:intergenic |
| GTAATAAGGGCTTAGAGGAA+TGG | 0.544994 | 6.1:+78369999 | None:intergenic |
| AGATGCTTGGGAAGAGCTCA+AGG | 0.550724 | 6.1:-78369962 | MS.gene063327:CDS |
| GTTGTTGTGATGTAGAAGCT+AGG | 0.555418 | 6.1:-78370126 | MS.gene063327:intron |
| TCCTACATTTGAGCCTTAGG+AGG | 0.560591 | 6.1:+78369834 | None:intergenic |
| GGCTTAGAGGAATGGTTCCA+TGG | 0.575688 | 6.1:+78370007 | None:intergenic |
| GGACTTGACCAATTGATACC+TGG | 0.579475 | 6.1:-78370030 | MS.gene063327:CDS |
| GACCAATTGATACCTGGCCA+TGG | 0.585251 | 6.1:-78370024 | MS.gene063327:CDS |
| CCACAAATTGATAATATCAG+TGG | 0.611414 | 6.1:+78369879 | None:intergenic |
| GATAGAACCTGAGATTGAGG+TGG | 0.632670 | 6.1:+78371472 | None:intergenic |
| AGTTGCTAGAGAGTAAGCCG+TGG | 0.644993 | 6.1:-78369939 | MS.gene063327:CDS |
| ATCAATTTGTGGCAGCAGAG+CGG | 0.648603 | 6.1:-78369868 | MS.gene063327:CDS |
| ATTTGGATGGAGAAGAACAT+CGG | 0.651745 | 6.1:-78370057 | MS.gene063327:CDS |
| AATTTGTGGCAGCAGAGCGG+CGG | 0.660943 | 6.1:-78369865 | MS.gene063327:CDS |
| CAAGAGCAGAAACAGTAAAG+CGG | 0.684597 | 6.1:+78371545 | None:intergenic |
| TGTGATGTAGAAGCTAGGAG+TGG | 0.712045 | 6.1:-78370121 | MS.gene063327:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATATAAAACAGTTTTA+GGG | - | chr6.1:78370460-78370479 | MS.gene063327:intron | 10.0% |
| !!! | TATTAATATAAAACAGTTTT+AGG | - | chr6.1:78370459-78370478 | MS.gene063327:intron | 10.0% |
| !! | AAAATGATTTATGTAAAAGT+GGG | - | chr6.1:78370210-78370229 | MS.gene063327:intron | 15.0% |
| !! | TAAAAAGCTTATATTATGTT+TGG | + | chr6.1:78371236-78371255 | None:intergenic | 15.0% |
| !! | TAAAATGATTTATGTAAAAG+TGG | - | chr6.1:78370209-78370228 | MS.gene063327:intron | 15.0% |
| !!! | ATGAAATTTTAGTTTATGTT+TGG | - | chr6.1:78370125-78370144 | MS.gene063327:intron | 15.0% |
| !!! | ATTTATAAGTTTGTTTCAAA+GGG | - | chr6.1:78369985-78370004 | MS.gene063327:CDS | 15.0% |
| !!! | CATTTTTGTTTTATAATTGT+TGG | - | chr6.1:78370553-78370572 | MS.gene063327:intron | 15.0% |
| !!! | TATTTATAAGTTTGTTTCAA+AGG | - | chr6.1:78369984-78370003 | MS.gene063327:CDS | 15.0% |
| !! | ACAAAAATGCTTAAATTACA+GGG | + | chr6.1:78370440-78370459 | None:intergenic | 20.0% |
| !! | TACAAAAATGCTTAAATTAC+AGG | + | chr6.1:78370441-78370460 | None:intergenic | 20.0% |
| !! | TTCTTAATGAAACTACAAAA+GGG | + | chr6.1:78370487-78370506 | None:intergenic | 20.0% |
| !! | TTGAAAAAAATAATCGTGTT+TGG | - | chr6.1:78370849-78370868 | MS.gene063327:intron | 20.0% |
| !! | TTTCTTAATGAAACTACAAA+AGG | + | chr6.1:78370488-78370507 | None:intergenic | 20.0% |
| !!! | AACTTTTTTAATTGTTACGA+TGG | - | chr6.1:78371272-78371291 | MS.gene063327:intron | 20.0% |
| !!! | GTAATAGAAATGATTTTGAA+TGG | - | chr6.1:78370879-78370898 | MS.gene063327:intron | 20.0% |
| !!! | TATGATTAAAATTGAGTTGA+AGG | - | chr6.1:78370186-78370205 | MS.gene063327:intron | 20.0% |
| !!! | TTTATAAGTTTGTTTCAAAG+GGG | - | chr6.1:78369986-78370005 | MS.gene063327:CDS | 20.0% |
| ! | ACTAATACACAAGTTTGAAA+GGG | - | chr6.1:78370777-78370796 | MS.gene063327:intron | 25.0% |
| ! | AGTAGAATCAATTCTATTAG+AGG | - | chr6.1:78370296-78370315 | MS.gene063327:intron | 25.0% |
| ! | TCTTAATGAAACTACAAAAG+GGG | + | chr6.1:78370486-78370505 | None:intergenic | 25.0% |
| ! | TTCAATGAAAATGCTTATAG+AGG | - | chr6.1:78370033-78370052 | MS.gene063327:CDS | 25.0% |
| ! | TTCAGTGTGAATGTTTAAAA+GGG | - | chr6.1:78370100-78370119 | MS.gene063327:CDS | 25.0% |
| ! | TTGATTTAAACATGTTTGAG+TGG | + | chr6.1:78371080-78371099 | None:intergenic | 25.0% |
| ! | TTTCAGTGTGAATGTTTAAA+AGG | - | chr6.1:78370099-78370118 | MS.gene063327:CDS | 25.0% |
| ! | TTTGAGTATAAAATCACCTT+TGG | - | chr6.1:78370986-78371005 | MS.gene063327:intron | 25.0% |
| !! | TAACATAGCTGTTGTTATTA+TGG | - | chr6.1:78370743-78370762 | MS.gene063327:intron | 25.0% |
| !! | TATCCTTAAGTTTTACCTAA+AGG | + | chr6.1:78370805-78370824 | None:intergenic | 25.0% |
| !!! | GTGAATTATTGGTTTATGTT+TGG | - | chr6.1:78370930-78370949 | MS.gene063327:intron | 25.0% |
| !!! | TTAGTTTATGTTTGGTTCTA+CGG | - | chr6.1:78370133-78370152 | MS.gene063327:intron | 25.0% |
| AAGTGTAGAAGATTAGAAGT+AGG | - | chr6.1:78370660-78370679 | MS.gene063327:intron | 30.0% | |
| CCACTGATATTATCAATTTG+TGG | - | chr6.1:78371541-78371560 | MS.gene063327:CDS | 30.0% | |
| CTCTAGATTTGATTCTAACT+TGG | + | chr6.1:78371035-78371054 | None:intergenic | 30.0% | |
| GACTAATACACAAGTTTGAA+AGG | - | chr6.1:78370776-78370795 | MS.gene063327:intron | 30.0% | |
| GTACCTTTAGGTAAAACTTA+AGG | - | chr6.1:78370799-78370818 | MS.gene063327:intron | 30.0% | |
| TGTTTGACCTTCAAAACATT+TGG | - | chr6.1:78370587-78370606 | MS.gene063327:intron | 30.0% | |
| ! | CCACAAATTGATAATATCAG+TGG | + | chr6.1:78371544-78371563 | None:intergenic | 30.0% |
| ! | GTCACCTATAGAATCAATTT+TGG | - | chr6.1:78370329-78370348 | MS.gene063327:intron | 30.0% |
| ! | GTGAGTTGAATGTGAATTAT+TGG | - | chr6.1:78370919-78370938 | MS.gene063327:intron | 30.0% |
| !! | AAAACATTTGGTGTCGAATA+AGG | - | chr6.1:78370599-78370618 | MS.gene063327:intron | 30.0% |
| !! | ATTTGCTTTTGTGATATCCA+CGG | + | chr6.1:78371501-78371520 | None:intergenic | 30.0% |
| !!! | TTCATGTGTGTTTGGTTTTA+CGG | + | chr6.1:78371138-78371157 | None:intergenic | 30.0% |
| AACACATATTGTGTCGCATA+CGG | - | chr6.1:78370698-78370717 | MS.gene063327:intron | 35.0% | |
| ACACACATGAAACCTATGTT+TGG | - | chr6.1:78371147-78371166 | MS.gene063327:intron | 35.0% | |
| ACATAGGTTTCATGTGTGTT+TGG | + | chr6.1:78371146-78371165 | None:intergenic | 35.0% | |
| ATTTGATTCTAACTTGGAGC+TGG | + | chr6.1:78371029-78371048 | None:intergenic | 35.0% | |
| ATTTGGATGGAGAAGAACAT+CGG | - | chr6.1:78371363-78371382 | MS.gene063327:intron | 35.0% | |
| CAAAAGTAATAAGGGCTTAG+AGG | + | chr6.1:78371429-78371448 | None:intergenic | 35.0% | |
| CATATGTGTAAGTGTAAGTC+TGG | + | chr6.1:78370372-78370391 | None:intergenic | 35.0% | |
| GATTCTATAGGTGACATGTT+TGG | + | chr6.1:78370324-78370343 | None:intergenic | 35.0% | |
| TCCTTGGCCAAAAGTAATAA+GGG | + | chr6.1:78371437-78371456 | None:intergenic | 35.0% | |
| TTCCTTGGCCAAAAGTAATA+AGG | + | chr6.1:78371438-78371457 | None:intergenic | 35.0% | |
| TTTGTAGCATTTGACTCCAA+AGG | + | chr6.1:78371005-78371024 | None:intergenic | 35.0% | |
| ! | CATATCGACTGACATAGAAA+TGG | + | chr6.1:78371198-78371217 | None:intergenic | 35.0% |
| ! | CTCTAAGCCCTTATTACTTT+TGG | - | chr6.1:78371427-78371446 | MS.gene063327:intron | 35.0% |
| ! | GGAGCCAAAATTGATTCTAT+AGG | + | chr6.1:78370336-78370355 | None:intergenic | 35.0% |
| !! | AAGTTTGAAAGGGTACCTTT+AGG | - | chr6.1:78370787-78370806 | MS.gene063327:intron | 35.0% |
| !! | AATAATCGTGTTTGGTTCTG+CGG | - | chr6.1:78370857-78370876 | MS.gene063327:intron | 35.0% |
| !! | TGTAAGTCTGGTTTCACTTT+TGG | + | chr6.1:78370360-78370379 | None:intergenic | 35.0% |
| !! | TTCGACACCAAATGTTTTGA+AGG | + | chr6.1:78370597-78370616 | None:intergenic | 35.0% |
| AGAGATAGAACCTGAGATTG+AGG | + | chr6.1:78369954-78369973 | None:intergenic | 40.0% | |
| ATGAACTTCAACACGAGTCT+TGG | + | chr6.1:78371345-78371364 | None:intergenic | 40.0% | |
| ATGGAGAAGAACATCGGTAT+TGG | - | chr6.1:78371369-78371388 | MS.gene063327:intron | 40.0% | |
| CAAGAGCAGAAACAGTAAAG+CGG | + | chr6.1:78369878-78369897 | None:intergenic | 40.0% | |
| CGTGTTGAAGTTCATTTGGA+TGG | - | chr6.1:78371350-78371369 | MS.gene063327:intron | 40.0% | |
| GACTCGTGTTGAAGTTCATT+TGG | - | chr6.1:78371346-78371365 | MS.gene063327:intron | 40.0% | |
| GTAATAAGGGCTTAGAGGAA+TGG | + | chr6.1:78371424-78371443 | None:intergenic | 40.0% | |
| GTTGTTGTGATGTAGAAGCT+AGG | - | chr6.1:78371294-78371313 | MS.gene063327:intron | 40.0% | |
| TAGCTTCTGCATCCAAACAT+AGG | + | chr6.1:78371162-78371181 | None:intergenic | 40.0% | |
| !! | AAGTCTGGTTTCACTTTTGG+AGG | + | chr6.1:78370357-78370376 | None:intergenic | 40.0% |
| !!! | GTGTGTTTGGTTTTACGGTA+GGG | + | chr6.1:78371133-78371152 | None:intergenic | 40.0% |
| !!! | TGTGTGTTTGGTTTTACGGT+AGG | + | chr6.1:78371134-78371153 | None:intergenic | 40.0% |
| ATCAATTTGTGGCAGCAGAG+CGG | - | chr6.1:78371552-78371571 | MS.gene063327:CDS | 45.0% | |
| GATAGAACCTGAGATTGAGG+TGG | + | chr6.1:78369951-78369970 | None:intergenic | 45.0% | |
| GGACTTGACCAATTGATACC+TGG | - | chr6.1:78371390-78371409 | MS.gene063327:intron | 45.0% | |
| TCTTCCCAAGCATCTTTCCT+TGG | + | chr6.1:78371453-78371472 | None:intergenic | 45.0% | |
| TGTGATGTAGAAGCTAGGAG+TGG | - | chr6.1:78371299-78371318 | MS.gene063327:intron | 45.0% | |
| TTCCATGGCCAGGTATCAAT+TGG | + | chr6.1:78371401-78371420 | None:intergenic | 45.0% | |
| TTGGCCAAGGAAAGATGCTT+GGG | - | chr6.1:78371446-78371465 | MS.gene063327:intron | 45.0% | |
| TTTGGCCAAGGAAAGATGCT+TGG | - | chr6.1:78371445-78371464 | MS.gene063327:intron | 45.0% | |
| !! | ACGAGTCTTGGTTTGTCTGT+TGG | + | chr6.1:78371333-78371352 | None:intergenic | 45.0% |
| !! | GCCCTTATTACTTTTGGCCA+AGG | - | chr6.1:78371433-78371452 | MS.gene063327:intron | 45.0% |
| AGAACCTGAGATTGAGGTGG+AGG | + | chr6.1:78369948-78369967 | None:intergenic | 50.0% | |
| AGATGCTTGGGAAGAGCTCA+AGG | - | chr6.1:78371458-78371477 | MS.gene063327:intron | 50.0% | |
| AGTTGCTAGAGAGTAAGCCG+TGG | - | chr6.1:78371481-78371500 | MS.gene063327:CDS | 50.0% | |
| GACCAATTGATACCTGGCCA+TGG | - | chr6.1:78371396-78371415 | MS.gene063327:intron | 50.0% | |
| GGCTTAGAGGAATGGTTCCA+TGG | + | chr6.1:78371416-78371435 | None:intergenic | 50.0% | |
| TCAACCTCCACCTCAATCTC+AGG | - | chr6.1:78369941-78369960 | MS.gene063327:CDS | 50.0% | |
| TGAGGTGGAGGTTGAAGAGA+AGG | + | chr6.1:78369936-78369955 | None:intergenic | 50.0% | |
| TGGAGGTTGAAGAGAAGGAG+AGG | + | chr6.1:78369931-78369950 | None:intergenic | 50.0% | |
| AATTTGTGGCAGCAGAGCGG+CGG | - | chr6.1:78371555-78371574 | MS.gene063327:CDS | 55.0% | |
| AGAGGAATGGTTCCATGGCC+AGG | + | chr6.1:78371411-78371430 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 78369849 | 78371593 | 78369849 | ID=MS.gene063327 |
| chr6.1 | mRNA | 78369849 | 78371593 | 78369849 | ID=MS.gene063327.t1;Parent=MS.gene063327 |
| chr6.1 | exon | 78371480 | 78371593 | 78371480 | ID=MS.gene063327.t1.exon1;Parent=MS.gene063327.t1 |
| chr6.1 | CDS | 78371480 | 78371593 | 78371480 | ID=cds.MS.gene063327.t1;Parent=MS.gene063327.t1 |
| chr6.1 | exon | 78369849 | 78370133 | 78369849 | ID=MS.gene063327.t1.exon2;Parent=MS.gene063327.t1 |
| chr6.1 | CDS | 78369849 | 78370133 | 78369849 | ID=cds.MS.gene063327.t1;Parent=MS.gene063327.t1 |
| Gene Sequence |
| Protein sequence |
