AlfalfaGEDB | MS.gene22454

M. sativa cultivar XinJiangDaYe / MS.gene22454

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22454.t1	XP_003625595.2	85.9	92	5	3	1	88	1	88	1.40E-31	145.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22454.t1	G7L1S2	85.9	92	5	3	1	88	1	88	9.8e-32	145.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene22454	0.867596	1.22E-65	-1.69E-46
MS.gene049173	MS.gene22454	0.829297	5.57E-55	-1.69E-46
MS.gene049217	MS.gene22454	0.87415	8.45E-68	-1.69E-46
MS.gene049222	MS.gene22454	0.858459	8.12E-63	-1.69E-46
MS.gene049232	MS.gene22454	0.80373	3.03E-49	-1.69E-46
MS.gene049285	MS.gene22454	0.873934	1.00E-67	-1.69E-46
MS.gene049320	MS.gene22454	0.864105	1.54E-64	-1.69E-46
MS.gene049609	MS.gene22454	0.813198	2.89E-51	-1.69E-46
MS.gene049633	MS.gene22454	0.817244	3.65E-52	-1.69E-46
MS.gene049805	MS.gene22454	0.806065	9.86E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22454.t1	MTR_7g100860	86.022	93	5	4	1	89	1	89	4.95e-49	151
MS.gene22454.t1	MTR_1g066720	75.676	37	8	1	23	58	18	54	1.46e-12	60.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22454.t1	AT5G03120	43.678	87	42	2	16	102	10	89	4.86e-17	70.9
MS.gene22454.t1	AT5G03120	47.692	65	33	1	16	80	10	73	4.23e-16	67.4

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Find 24 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGTGCATGTCATACA+TGG	0.499981	7.1:+8352922	None:intergenic
AAGAAAGAGAAAGAAACAAT+TGG	0.485064	7.1:-8352969	None:intergenic
ACAAACCTCTAGAGAAATAT+GGG	0.461398	7.1:-8353003	None:intergenic
ACAATTGGCGATGAAGATGG+AGG	0.611543	7.1:-8352954	None:intergenic
ACTCTCCCATATTTCTCTAG+AGG	0.566327	7.1:+8352998	MS.gene22454:CDS
AGCATCAACACCCGTAGCTT+TGG	0.412256	7.1:-8353484	None:intergenic
AGCTGAATGAGGCTTACCAT+GGG	0.626115	7.1:-8353433	None:intergenic
ATTTATGAGATCGATTATAG+AGG	0.512251	7.1:+8353372	MS.gene22454:CDS
CAACTACTCATTATCATCAC+AGG	0.565467	7.1:+8353540	MS.gene22454:CDS
CAATTGGCGATGAAGATGGA+GGG	0.648695	7.1:-8352953	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCTCTTGTAAATAGGAT+CGG	+	chr7.1:8353278-8353297	MS.gene22454:intron	30.0%
GAAAGAGGGTTTGTAAAATT+CGG	-	chr7.1:8353031-8353050	None:intergenic	30.0%
GTCAACTTTCTCTTGTAAAT+AGG	+	chr7.1:8353273-8353292	MS.gene22454:intron	30.0%
TTGTCTATTGTAAATAGGAC+CGG	-	chr7.1:8353170-8353189	None:intergenic	30.0%
CAACTACTCATTATCATCAC+AGG	+	chr7.1:8353540-8353559	MS.gene22454:CDS	35.0%
TCATTATCATCACAGGATCT+AGG	+	chr7.1:8353547-8353566	MS.gene22454:CDS	35.0%
TGATGCTACCATGAAACAAA+AGG	+	chr7.1:8353500-8353519	MS.gene22454:CDS	35.0%
TTCTACAATATTACTCCCTC+CGG	+	chr7.1:8353148-8353167	MS.gene22454:intron	35.0%
ACTCTCCCATATTTCTCTAG+AGG	+	chr7.1:8352998-8353017	MS.gene22454:CDS	40.0%
CTATTGTAAATAGGACCGGA+GGG	-	chr7.1:8353166-8353185	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	8352932	8353587	8352932	ID=MS.gene22454
chr7.1	mRNA	8352932	8353587	8352932	ID=MS.gene22454.t1;Parent=MS.gene22454
chr7.1	exon	8352932	8353019	8352932	ID=MS.gene22454.t1.exon1;Parent=MS.gene22454.t1
chr7.1	CDS	8352932	8353019	8352932	ID=cds.MS.gene22454.t1;Parent=MS.gene22454.t1
chr7.1	exon	8353346	8353587	8353346	ID=MS.gene22454.t1.exon2;Parent=MS.gene22454.t1
chr7.1	CDS	8353346	8353587	8353346	ID=cds.MS.gene22454.t1;Parent=MS.gene22454.t1

Gene Sequence

>MS.gene22454

ATGTCATACATGGATCTAAGACCCTCCATCTTCATCGCCAATTGTTTCTTTCTCTTTCTTATACTCACTCTCCCATATTTCTCTAGAGGTTTGTCACCGAATTTTACAAACCCTCTTTCCAATTTCCACCACTCTCATAAATTTTATAATATGTGTGTATGCTAATTTATATTATATTATTTGATTTATATAGTACACTATCATTATTACCTTTTTTTCTACAATATTACTCCCTCCGGTCCTATTTACAATAGACAATTAATTTTTTAGATACATTAAATAATTTATGTATTTAGTTAGATTCTTGACTAGATACATAAATTATTCAATGTATCTAAAAAGTCAACTTTCTCTTGTAAATAGGATCGGAGGGAGTATTAATTTGTTTCTTGGTGTTATGTTTTTAAATTTTAGGTGGATCGGAAGCATTGGATTCAGAAATTTATGAGATCGATTATAGAGGTCCTGAGACTCACTCGTTTGTGCCTCCACCTGATCATTCCCATGGTAAGCCTCATTCAGCTCATGACAAGAGCTCTACTGCAGCTGCAACCAAAGCTACGGGTGTTGATGCTACCATGAAACAAAAGGCAAGTTTTGAATTAAATCAACTACTCATTATCATCACAGGATCTAGGAAATTTTATTTCGTATAA

Protein sequence

>MS.gene22454.t1

MSYMDLRPSIFIANCFFLFLILTLPYFSRGGSEALDSEIYEIDYRGPETHSFVPPPDHSHGKPHSAHDKSSTAAATKATGVDATMKQKASFELNQLLIIITGSRKFYFV