AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34456


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34456.t1 MTR_1g101400 92.691 301 10 2 1 298 1 292 0.0 553
MS.gene34456.t1 MTR_2g021790 54.412 68 26 2 52 117 1 65 4.93e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34456.t1 AT5G52100 69.536 302 74 4 1 298 1 288 5.60e-146 412

Find 70 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGACCTTACTATGGTTT+TGG 0.191058 1.2:-75717874 MS.gene34456:CDS
GTGGAACAGGTTGTAATAAA+TGG 0.207909 1.2:-75718176 MS.gene34456:intron
TAGAGAGATTGTTGGCAATT+TGG 0.249550 1.2:+75716692 None:intergenic
TTGAGAATTCAAGTAGTTGA+TGG 0.320100 1.2:+75718373 None:intergenic
CAATTTCGACATTGCGGTAA+TGG 0.331384 1.2:+75716982 None:intergenic
ACAATATAGGCAACAGCATT+TGG 0.347090 1.2:-75717343 MS.gene34456:intron
TATACTAAATGACCTTACTA+TGG 0.353599 1.2:-75717880 MS.gene34456:CDS
CAACATGTTGGGGAAGATAT+TGG 0.357960 1.2:-75718071 MS.gene34456:CDS
AAAGGCAAGGGGTCAAGCTT+TGG 0.362723 1.2:-75716523 MS.gene34456:intron
GTTGCTCCAACGCTTTCAAT+AGG 0.371224 1.2:-75717044 MS.gene34456:CDS
GACTACGACCGCTGTGGCCT+TGG 0.379286 1.2:+75717732 None:intergenic
CAGAAGCAGAAGCAATATAA+AGG 0.393758 1.2:-75718276 MS.gene34456:intron
AAGGCAAGGGGTCAAGCTTT+GGG 0.402926 1.2:-75716522 MS.gene34456:CDS
GTTGGCAATTTGGTTTGCTT+CGG 0.404040 1.2:+75716702 None:intergenic
TGGAATTCGCGTGCACAGTT+TGG 0.408268 1.2:-75716496 MS.gene34456:CDS
CTATTGATACTCAACATGTT+GGG 0.408524 1.2:-75718082 MS.gene34456:CDS
AGTAGTTGATGGAATGAAAC+TGG 0.415845 1.2:+75718384 None:intergenic
ATCTGTGATATCATGCTTGA+TGG 0.417837 1.2:+75716161 None:intergenic
GCCAGAGGAATGGAAGTTGC+TGG 0.433583 1.2:-75718107 MS.gene34456:CDS
TCACCCCTTGCTCACCATGC+TGG 0.433731 1.2:+75717246 None:intergenic
TCCAGCAACTTCCATTCCTC+TGG 0.450267 1.2:+75718106 None:intergenic
TCTTACATTTGCATTAGCCT+TGG 0.452314 1.2:+75716953 None:intergenic
CAACTACTTGAATTCTCAAA+TGG 0.460268 1.2:-75718369 MS.gene34456:CDS
AGGGGTCAAGCTTTGGGAGA+TGG 0.464250 1.2:-75716516 MS.gene34456:CDS
ACCGTATCTAATTTGATTCG+TGG 0.478498 1.2:+75717298 None:intergenic
ATTTGGTTTGCTTCGGCCGA+TGG 0.481953 1.2:+75716709 None:intergenic
GGAATGAAACTGGCAGCTTA+AGG 0.481987 1.2:+75718394 None:intergenic
ACCGAGGTTAGAGAGATTGT+TGG 0.485133 1.2:+75716684 None:intergenic
CTAATGGCTAATAGCAAGCC+TGG 0.489682 1.2:+75716123 None:intergenic
TTTCCTGTAGCTTTGTGGCA+TGG 0.496064 1.2:-75717922 MS.gene34456:intron
GCTATTGATACTCAACATGT+TGG 0.498878 1.2:-75718083 MS.gene34456:CDS
ATTGATCCTATTGAAAGCGT+TGG 0.506989 1.2:+75717038 None:intergenic
AGACTCCTCAACAGATGTCT+TGG 0.508028 1.2:-75716644 MS.gene34456:intron
TAGAACCCAAAACCATAGTA+AGG 0.510640 1.2:+75717868 None:intergenic
ACTATAATGACAGGGTGTCT+TGG 0.515706 1.2:-75717066 MS.gene34456:intron
ATAGTAAGGTCATTTAGTAT+AGG 0.525371 1.2:+75717882 None:intergenic
AGGATCAATATTGTTGCAGC+AGG 0.526093 1.2:-75717024 MS.gene34456:CDS
GTCATACACTGCGGAAGGGT+CGG 0.540214 1.2:+75717702 None:intergenic
TGTAATAAATGGAGCAGCAA+AGG 0.543811 1.2:-75718165 MS.gene34456:CDS
GCCAACAATCTCTCTAACCT+CGG 0.544225 1.2:-75716685 MS.gene34456:CDS
AGCAGTATTAGCTGTGACAA+AGG 0.549949 1.2:-75718129 MS.gene34456:CDS
TGTTGGGGAAGATATTGGAC+AGG 0.558324 1.2:-75718066 MS.gene34456:intron
TTACCGCAATGTCGAAATTG+TGG 0.563978 1.2:-75716979 MS.gene34456:CDS
TGTTATACAGGATCTTCCAT+CGG 0.565260 1.2:-75716725 MS.gene34456:intron
TGTCGAAATTGTGGAATCCA+AGG 0.571619 1.2:-75716970 MS.gene34456:CDS
GATGTACAATGTCTTATGCC+AGG 0.572407 1.2:-75716141 MS.gene34456:CDS
AAGTGAACTGTTGTACTAGA+GGG 0.580769 1.2:+75716459 None:intergenic
ACATTGTCATACACTGCGGA+AGG 0.587528 1.2:+75717697 None:intergenic
AAAGTGAACTGTTGTACTAG+AGG 0.590884 1.2:+75716458 None:intergenic
TGTGACAAAGGCCAGAGGAA+TGG 0.593244 1.2:-75718117 MS.gene34456:CDS
GTTGTACTAGAGGGAAGCCC+TGG 0.594961 1.2:+75716468 None:intergenic
GCTTCTGCTTCTCAACACAA+AGG 0.596731 1.2:+75718316 None:intergenic
AATGGAGCAGCAAAGGAGGT+AGG 0.602441 1.2:-75718158 MS.gene34456:CDS
TATTGATACTCAACATGTTG+GGG 0.603145 1.2:-75718081 MS.gene34456:CDS
TTTAGTATAGGTATTTCAAG+AGG 0.603621 1.2:+75717894 None:intergenic
ATTATCTGCATTCTGTGAGA+AGG 0.610160 1.2:-75717269 MS.gene34456:CDS
AATAAATGGAGCAGCAAAGG+AGG 0.611168 1.2:-75718162 MS.gene34456:CDS
TAGAAAAGTAGTGCGCCTCA+AGG 0.613059 1.2:-75716103 MS.gene34456:CDS
GCCACGAATCAAATTAGATA+CGG 0.614332 1.2:-75717299 MS.gene34456:CDS
CAAATAATTAAGGTACCTTG+AGG 0.628224 1.2:+75716088 None:intergenic
CCTTACCAAGACATCTGTTG+AGG 0.630824 1.2:+75716639 None:intergenic
ATTCCACAATTTCGACATTG+CGG 0.643338 1.2:+75716976 None:intergenic
CTCTGTTATAGATTTGACCG+AGG 0.649127 1.2:+75716668 None:intergenic
CATTGTCATACACTGCGGAA+GGG 0.659779 1.2:+75717698 None:intergenic
ATTCTGTGAGAAGGCCAGCA+TGG 0.689417 1.2:-75717260 MS.gene34456:intron
TATCACACGACAAAGGCAAG+GGG 0.699381 1.2:-75716534 MS.gene34456:intron
GAAATCGACTACGACCGCTG+TGG 0.707192 1.2:+75717726 None:intergenic
TTAGCTGTGACAAAGGCCAG+AGG 0.735270 1.2:-75718122 MS.gene34456:CDS
TTTGTAGTCCAAGGCCACAG+CGG 0.738213 1.2:-75717740 MS.gene34456:intron
TCATACATTGTCATACACTG+CGG 0.774824 1.2:+75717693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTAGTCAATTTA+AGG - chr1.2:75718261-75718280 MS.gene34456:intron 10.0%
!! TAAATTATATTTGTAGCATT+AGG - chr1.2:75717089-75717108 MS.gene34456:intron 15.0%
!! AAGACTGATAGTTTATTTAT+TGG - chr1.2:75716925-75716944 MS.gene34456:intron 20.0%
!! AAGATGAAGTGTAAATTAAA+TGG - chr1.2:75716893-75716912 MS.gene34456:intron 20.0%
!! AGACTGATAGTTTATTTATT+GGG - chr1.2:75716926-75716945 MS.gene34456:intron 20.0%
!! ATATAAGCACTTAATTAACA+TGG - chr1.2:75716538-75716557 MS.gene34456:intron 20.0%
!! CTACAGGAAAATAAAAAATT+AGG + chr1.2:75716564-75716583 None:intergenic 20.0%
!! TTATGGTAAAATCTATTTAG+AGG - chr1.2:75717608-75717627 MS.gene34456:intron 20.0%
!!! TAAATAGATTTTACCATAAG+TGG + chr1.2:75717607-75717626 None:intergenic 20.0%
!!! TTATATTTTTGTGAGTAAGT+TGG + chr1.2:75718120-75718139 None:intergenic 20.0%
!!! TTCATCTTAAATGCATATTT+TGG + chr1.2:75716881-75716900 None:intergenic 20.0%
! AAATGCCAAAAAAGAACAAA+TGG + chr1.2:75717405-75717424 None:intergenic 25.0%
! AATGTATGACAATGTAAAAC+AGG - chr1.2:75716817-75716836 MS.gene34456:intron 25.0%
! AATTATTTATCACACGACAA+AGG - chr1.2:75717955-75717974 MS.gene34456:intron 25.0%
! AGTGTAAATTAAATGGTTCT+TGG - chr1.2:75716900-75716919 MS.gene34456:intron 25.0%
! ATAGTAAGGTCATTTAGTAT+AGG + chr1.2:75716617-75716636 None:intergenic 25.0%
! ATTTGGTTAACTATAATGAC+AGG - chr1.2:75717421-75717440 MS.gene34456:intron 25.0%
! CGAACATACTTATATATTGT+TGG - chr1.2:75716855-75716874 MS.gene34456:intron 25.0%
! TAAAGTAGGAAATAACTGAA+AGG + chr1.2:75717344-75717363 None:intergenic 25.0%
! TATACTAAATGACCTTACTA+TGG - chr1.2:75716616-75716635 MS.gene34456:intron 25.0%
! TGAATTAGCAATAACAAACT+TGG - chr1.2:75716673-75716692 MS.gene34456:CDS 25.0%
! TTATGTTCAATATCCACTTA+TGG - chr1.2:75717591-75717610 MS.gene34456:intron 25.0%
! TTGATTCTTCTTCACAATAT+AGG - chr1.2:75717140-75717159 MS.gene34456:intron 25.0%
! TTTAGTATAGGTATTTCAAG+AGG + chr1.2:75716605-75716624 None:intergenic 25.0%
! TTTGGTTAACTATAATGACA+GGG - chr1.2:75717422-75717441 MS.gene34456:intron 25.0%
!! AAGTCTGTTTTGTATAAAGT+AGG + chr1.2:75717358-75717377 None:intergenic 25.0%
!! ATTTCAAGTGATAGGATAAT+AGG - chr1.2:75717031-75717050 MS.gene34456:CDS 25.0%
!!! ATTTGTTCTTTTTTGGCATT+TGG - chr1.2:75717404-75717423 MS.gene34456:intron 25.0%
!!! CTAAACCATTTGTTCTTTTT+TGG - chr1.2:75717397-75717416 MS.gene34456:intron 25.0%
!!! TTTTTGTTTAAGAGTGCTTA+TGG - chr1.2:75716453-75716472 MS.gene34456:CDS 25.0%
AAGAGCTTCTTCAGTATATT+TGG + chr1.2:75717752-75717771 None:intergenic 30.0%
AATGAGAAGATAGTACACTT+TGG + chr1.2:75718289-75718308 None:intergenic 30.0%
AGAATAAAATGTGTTCACCA+AGG + chr1.2:75718085-75718104 None:intergenic 30.0%
AGATTGAAGAGTAGATTATG+TGG - chr1.2:75717057-75717076 MS.gene34456:intron 30.0%
CAACTACTTGAATTCTCAAA+TGG - chr1.2:75716127-75716146 MS.gene34456:CDS 30.0%
CATAATCTACTCTTCAATCT+TGG + chr1.2:75717057-75717076 None:intergenic 30.0%
CTATTGATACTCAACATGTT+GGG - chr1.2:75716414-75716433 MS.gene34456:intron 30.0%
GAAATAACTGAAAGGACAAA+AGG + chr1.2:75717336-75717355 None:intergenic 30.0%
GTGGATATTGAACATAAACA+AGG + chr1.2:75717588-75717607 None:intergenic 30.0%
TATTGATACTCAACATGTTG+GGG - chr1.2:75716415-75716434 MS.gene34456:intron 30.0%
TGTACTATCTTCTCATTATG+AGG - chr1.2:75718292-75718311 MS.gene34456:CDS 30.0%
TTAGTAGTAGCAGATTTAGT+CGG + chr1.2:75717381-75717400 None:intergenic 30.0%
TTGAGAATTCAAGTAGTTGA+TGG + chr1.2:75716126-75716145 None:intergenic 30.0%
! AAATGACCTTACTATGGTTT+TGG - chr1.2:75716622-75716641 MS.gene34456:intron 30.0%
! AAGCAATTTTTCATAGCTGA+AGG - chr1.2:75717003-75717022 MS.gene34456:CDS 30.0%
! AATGACCTTACTATGGTTTT+GGG - chr1.2:75716623-75716642 MS.gene34456:intron 30.0%
! AGGAAATGATTTCAAGTGAT+AGG - chr1.2:75717023-75717042 MS.gene34456:CDS 30.0%
!! TTTAAGAGTGCTTATGGAAA+TGG - chr1.2:75716459-75716478 MS.gene34456:CDS 30.0%
!! TTTATTTTCCTGTAGCTTTG+TGG - chr1.2:75716569-75716588 MS.gene34456:intron 30.0%
AAAGTGAACTGTTGTACTAG+AGG + chr1.2:75718041-75718060 None:intergenic 35.0%
AAGTGAACTGTTGTACTAGA+GGG + chr1.2:75718040-75718059 None:intergenic 35.0%
ACAATATAGGCAACAGCATT+TGG - chr1.2:75717153-75717172 MS.gene34456:intron 35.0%
ATCTGTGATATCATGCTTGA+TGG + chr1.2:75718338-75718357 None:intergenic 35.0%
ATTACAACCTGTTCCACAAA+GGG + chr1.2:75716317-75716336 None:intergenic 35.0%
ATTATCTGCATTCTGTGAGA+AGG - chr1.2:75717227-75717246 MS.gene34456:intron 35.0%
ATTCCACAATTTCGACATTG+CGG + chr1.2:75717523-75717542 None:intergenic 35.0%
CAGAAGCAGAAGCAATATAA+AGG - chr1.2:75716220-75716239 MS.gene34456:intron 35.0%
GAATTGCAATTTGTAGTCCA+AGG - chr1.2:75716747-75716766 MS.gene34456:intron 35.0%
GCCACGAATCAAATTAGATA+CGG - chr1.2:75717197-75717216 MS.gene34456:intron 35.0%
GCTATTGATACTCAACATGT+TGG - chr1.2:75716413-75716432 MS.gene34456:intron 35.0%
GTGGAACAGGTTGTAATAAA+TGG - chr1.2:75716320-75716339 MS.gene34456:intron 35.0%
GTTAAGCTAACTTAACTGAC+TGG - chr1.2:75717653-75717672 MS.gene34456:intron 35.0%
TAGAACCCAAAACCATAGTA+AGG + chr1.2:75716631-75716650 None:intergenic 35.0%
TAGAGAGATTGTTGGCAATT+TGG + chr1.2:75717807-75717826 None:intergenic 35.0%
TATTACAACCTGTTCCACAA+AGG + chr1.2:75716318-75716337 None:intergenic 35.0%
TCATACATTGTCATACACTG+CGG + chr1.2:75716806-75716825 None:intergenic 35.0%
TGTAATAAATGGAGCAGCAA+AGG - chr1.2:75716331-75716350 MS.gene34456:intron 35.0%
TGTTATACAGGATCTTCCAT+CGG - chr1.2:75717771-75717790 MS.gene34456:intron 35.0%
! ACCGTATCTAATTTGATTCG+TGG + chr1.2:75717201-75717220 None:intergenic 35.0%
! ATTGATCCTATTGAAAGCGT+TGG + chr1.2:75717461-75717480 None:intergenic 35.0%
! TCAATTTTCAACACCCTTTG+TGG - chr1.2:75716301-75716320 MS.gene34456:intron 35.0%
! TCTTACATTTGCATTAGCCT+TGG + chr1.2:75717546-75717565 None:intergenic 35.0%
! TGAAGAAGCTCTTGTTATAC+AGG - chr1.2:75717759-75717778 MS.gene34456:intron 35.0%
! TGTAAAACAGGTTTGAGTTC+TGG - chr1.2:75716829-75716848 MS.gene34456:intron 35.0%
!! AGTACAACAGTTCACTTTTC+TGG - chr1.2:75718043-75718062 MS.gene34456:intron 35.0%
!! AGTAGTTGATGGAATGAAAC+TGG + chr1.2:75716115-75716134 None:intergenic 35.0%
AATAAATGGAGCAGCAAAGG+AGG - chr1.2:75716334-75716353 MS.gene34456:intron 40.0%
AGCAGTATTAGCTGTGACAA+AGG - chr1.2:75716367-75716386 MS.gene34456:intron 40.0%
AGGATCAATATTGTTGCAGC+AGG - chr1.2:75717472-75717491 MS.gene34456:intron 40.0%
CAACATGTTGGGGAAGATAT+TGG - chr1.2:75716425-75716444 MS.gene34456:intron 40.0%
CAATTTCGACATTGCGGTAA+TGG + chr1.2:75717517-75717536 None:intergenic 40.0%
CTCTGTTATAGATTTGACCG+AGG + chr1.2:75717831-75717850 None:intergenic 40.0%
GATGTACAATGTCTTATGCC+AGG - chr1.2:75718355-75718374 MS.gene34456:CDS 40.0%
TCTTCATTCCCAAACGAAGA+CGG - chr1.2:75717703-75717722 MS.gene34456:CDS 40.0%
TGTCGAAATTGTGGAATCCA+AGG - chr1.2:75717526-75717545 MS.gene34456:intron 40.0%
TTACCGCAATGTCGAAATTG+TGG - chr1.2:75717517-75717536 MS.gene34456:intron 40.0%
TTATCACACGACAAAGGCAA+GGG - chr1.2:75717961-75717980 MS.gene34456:intron 40.0%
TTTATCACACGACAAAGGCA+AGG - chr1.2:75717960-75717979 MS.gene34456:intron 40.0%
! ACTATAATGACAGGGTGTCT+TGG - chr1.2:75717430-75717449 MS.gene34456:intron 40.0%
!! ACAGTTCACTTTTCTGGTCT+TGG - chr1.2:75718049-75718068 MS.gene34456:intron 40.0%
!! GTTGGCAATTTGGTTTGCTT+CGG + chr1.2:75717797-75717816 None:intergenic 40.0%
!!! GGTTTTGGGTTCTATATCTC+AGG - chr1.2:75716637-75716656 MS.gene34456:intron 40.0%
!!! TGCACAGTTTGGTTTTACCA+GGG - chr1.2:75718011-75718030 MS.gene34456:intron 40.0%
ACATTGTCATACACTGCGGA+AGG + chr1.2:75716802-75716821 None:intergenic 45.0%
ACCGAGGTTAGAGAGATTGT+TGG + chr1.2:75717815-75717834 None:intergenic 45.0%
ACCTTTCTCCGTCTTCGTTT+GGG + chr1.2:75717714-75717733 None:intergenic 45.0%
AGACTCCTCAACAGATGTCT+TGG - chr1.2:75717852-75717871 MS.gene34456:intron 45.0%
CATTGTCATACACTGCGGAA+GGG + chr1.2:75716801-75716820 None:intergenic 45.0%
CCTCAACAGATGTCTTGGTA+AGG - chr1.2:75717857-75717876 MS.gene34456:intron 45.0%
CCTTACCAAGACATCTGTTG+AGG + chr1.2:75717860-75717879 None:intergenic 45.0%
CTAATGGCTAATAGCAAGCC+TGG + chr1.2:75718376-75718395 None:intergenic 45.0%
GCCAACAATCTCTCTAACCT+CGG - chr1.2:75717811-75717830 MS.gene34456:intron 45.0%
GCTTCTGCTTCTCAACACAA+AGG + chr1.2:75716183-75716202 None:intergenic 45.0%
GGAATGAAACTGGCAGCTTA+AGG + chr1.2:75716105-75716124 None:intergenic 45.0%
GTTGCTCCAACGCTTTCAAT+AGG - chr1.2:75717452-75717471 MS.gene34456:intron 45.0%
TAGAAAAGTAGTGCGCCTCA+AGG - chr1.2:75718393-75718412 MS.gene34456:CDS 45.0%
TATCACACGACAAAGGCAAG+GGG - chr1.2:75717962-75717981 MS.gene34456:intron 45.0%
TGTTGGGGAAGATATTGGAC+AGG - chr1.2:75716430-75716449 MS.gene34456:intron 45.0%
TTCAACACCCTTTGTGGAAC+AGG - chr1.2:75716307-75716326 MS.gene34456:intron 45.0%
!! GAGGCGCACTACTTTTCTAA+TGG + chr1.2:75718392-75718411 None:intergenic 45.0%
!! TTTCCTGTAGCTTTGTGGCA+TGG - chr1.2:75716574-75716593 MS.gene34456:intron 45.0%
!!! GTGCACAGTTTGGTTTTACC+AGG - chr1.2:75718010-75718029 MS.gene34456:intron 45.0%
!!! TCACTTTTCTGGTCTTGGAG+AGG - chr1.2:75718054-75718073 MS.gene34456:intron 45.0%
AAAGGCAAGGGGTCAAGCTT+TGG - chr1.2:75717973-75717992 MS.gene34456:intron 50.0%
AAGGCAAGGGGTCAAGCTTT+GGG - chr1.2:75717974-75717993 MS.gene34456:intron 50.0%
AATGGAGCAGCAAAGGAGGT+AGG - chr1.2:75716338-75716357 MS.gene34456:intron 50.0%
ATTCTGTGAGAAGGCCAGCA+TGG - chr1.2:75717236-75717255 MS.gene34456:intron 50.0%
CTTCCATGCCACAAAGCTAC+AGG + chr1.2:75716580-75716599 None:intergenic 50.0%
GACCTTTCTCCGTCTTCGTT+TGG + chr1.2:75717715-75717734 None:intergenic 50.0%
TCCAGCAACTTCCATTCCTC+TGG + chr1.2:75716393-75716412 None:intergenic 50.0%
TCCCAAACGAAGACGGAGAA+AGG - chr1.2:75717710-75717729 MS.gene34456:CDS 50.0%
TGGAATTCGCGTGCACAGTT+TGG - chr1.2:75718000-75718019 MS.gene34456:intron 50.0%
TGTGACAAAGGCCAGAGGAA+TGG - chr1.2:75716379-75716398 MS.gene34456:intron 50.0%
TTAGCTGTGACAAAGGCCAG+AGG - chr1.2:75716374-75716393 MS.gene34456:intron 50.0%
TTTGTAGTCCAAGGCCACAG+CGG - chr1.2:75716756-75716775 MS.gene34456:intron 50.0%
!! ATTTGGTTTGCTTCGGCCGA+TGG + chr1.2:75717790-75717809 None:intergenic 50.0%
AAGGCCAGCATGGTGAGCAA+GGG - chr1.2:75717246-75717265 MS.gene34456:intron 55.0%
GAAATCGACTACGACCGCTG+TGG + chr1.2:75716773-75716792 None:intergenic 55.0%
GCCAGAGGAATGGAAGTTGC+TGG - chr1.2:75716389-75716408 MS.gene34456:intron 55.0%
GTCATACACTGCGGAAGGGT+CGG + chr1.2:75716797-75716816 None:intergenic 55.0%
GTTGTACTAGAGGGAAGCCC+TGG + chr1.2:75718031-75718050 None:intergenic 55.0%
! GTCTTGGAGAGGCATGTCCT+TGG - chr1.2:75718065-75718084 MS.gene34456:intron 55.0%
!! AGGGGTCAAGCTTTGGGAGA+TGG - chr1.2:75717980-75717999 MS.gene34456:intron 55.0%
AGGCCAGCATGGTGAGCAAG+GGG - chr1.2:75717247-75717266 MS.gene34456:intron 60.0%
GAAGGCCAGCATGGTGAGCA+AGG - chr1.2:75717245-75717264 MS.gene34456:intron 60.0%
TCACCCCTTGCTCACCATGC+TGG + chr1.2:75717253-75717272 None:intergenic 60.0%
GACTACGACCGCTGTGGCCT+TGG + chr1.2:75716767-75716786 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75716095 75718423 75716095 ID=MS.gene34456
chr1.2 mRNA 75716095 75718423 75716095 ID=MS.gene34456.t1;Parent=MS.gene34456
chr1.2 exon 75718277 75718423 75718277 ID=MS.gene34456.t1.exon1;Parent=MS.gene34456.t1
chr1.2 CDS 75718277 75718423 75718277 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
chr1.2 exon 75718067 75718189 75718067 ID=MS.gene34456.t1.exon2;Parent=MS.gene34456.t1
chr1.2 CDS 75718067 75718189 75718067 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
chr1.2 exon 75717860 75717934 75717860 ID=MS.gene34456.t1.exon3;Parent=MS.gene34456.t1
chr1.2 CDS 75717860 75717934 75717860 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
chr1.2 exon 75717699 75717755 75717699 ID=MS.gene34456.t1.exon4;Parent=MS.gene34456.t1
chr1.2 CDS 75717699 75717755 75717699 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
chr1.2 exon 75717261 75717356 75717261 ID=MS.gene34456.t1.exon5;Parent=MS.gene34456.t1
chr1.2 CDS 75717261 75717356 75717261 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
chr1.2 exon 75716959 75717075 75716959 ID=MS.gene34456.t1.exon6;Parent=MS.gene34456.t1
chr1.2 CDS 75716959 75717075 75716959 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
chr1.2 exon 75716645 75716737 75716645 ID=MS.gene34456.t1.exon7;Parent=MS.gene34456.t1
chr1.2 CDS 75716645 75716737 75716645 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
chr1.2 exon 75716443 75716541 75716443 ID=MS.gene34456.t1.exon8;Parent=MS.gene34456.t1
chr1.2 CDS 75716443 75716541 75716443 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
chr1.2 exon 75716095 75716190 75716095 ID=MS.gene34456.t1.exon9;Parent=MS.gene34456.t1
chr1.2 CDS 75716095 75716190 75716095 ID=cds.MS.gene34456.t1;Parent=MS.gene34456.t1
Gene Sequence

>MS.gene34456

ATGGCTGCCTTAAGCTGCCAGTTTCATTCCATCAACTACTTGAATTCTCAAATGGTCAAAAGCAGAAGCAATCATTCTATAATTTCCTTTGTGTTGAGAAGCAGAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGAAGCAATATAAAGGTACTAACTTAAAGAGCATTTCAAAATTCAACACTTTGATTCAGTTCAAATTTGTGATTTCAATTTTCAACACCCTTTGTGGAACAGGTTGTAATAAATGGAGCAGCAAAGGAGGTAGGAAGAGCAGCAGTATTAGCTGTGACAAAGGCCAGAGGAATGGAAGTTGCTGGAGCTATTGATACTCAACATGTTGGGGAAGATATTGGACAGGTTTTTGTTTAAGAGTGCTTATGGAAATGGCTTTTATATGAAAATAGTTTGACTTTATTTTATTATTTATTATAGAAATGACTTTTATATAAGCACTTAATTAACATGGCCTAATTTTTTATTTTCCTGTAGCTTTGTGGCATGGAAGAGCCTCTTGAAATACCTATACTAAATGACCTTACTATGGTTTTGGGTTCTATATCTCAGGTAATGTGAAATTGTGAATTAGCAATAACAAACTTGGTATTATTCAATTAGTATTTCTTTAATCTTTTTGTATCTACAATGACTTTTTGAATTGCAATTTGTAGTCCAAGGCCACAGCGGTCGTAGTCGATTTCACCGACCCTTCCGCAGTGTATGACAATGTATGACAATGTAAAACAGGTTTGAGTTCTGGTTACGAACATACTTATATATTGTTGGCCAAAATATGCATTTAAGATGAAGTGTAAATTAAATGGTTCTTGGCTAAGACTGATAGTTTATTTATTGGGATTCTTAATTAGCTAAAAATAGCATTACTGTGATAGTAATAGACAGAATTTTCAAAGCAATTTTTCATAGCTGAAGGAAATGATTTCAAGTGATAGGATAATAGGCCAAGATTGAAGAGTAGATTATGTGGAGTAACTCATAAATTATATTTGTAGCATTAGGCTGTGATTTTATAATACTCGAACATTGATTGATTCTTCTTCACAATATAGGCAACAGCATTTGGCATGAAAAGTGTTGTGTACGTGCCACGAATCAAATTAGATACGGTTGCAGCATTATCTGCATTCTGTGAGAAGGCCAGCATGGTGAGCAAGGGGTGAGACTTATAAGAACTAATGCATAGTCTGCTTGAACTTAATTATGTTCTCTTTTCTATATATCCTTTTGTCCTTTCAGTTATTTCCTACTTTATACAAAACAGACTTCCGACTAAATCTGCTACTACTAAACCATTTGTTCTTTTTTGGCATTTGGTTAACTATAATGACAGGGTGTCTTGGTTGCTCCAACGCTTTCAATAGGATCAATATTGTTGCAGCAGGCTGCAATTTCAGCTTCTTTCCATTACCGCAATGTCGAAATTGTGGAATCCAAGGCTAATGCAAATGTAAGAATGAATCATTTTTATTTTTCCTTGTTTATGTTCAATATCCACTTATGGTAAAATCTATTTAGAGGTAAATGTTTGTTACACTAGTTAGTTAAGCTAACTTAACTGACTGGTATAACTAACTTTTACATGTAATAAAATCTTCATTCCCAAACGAAGACGGAGAAAGGTCTAAAAAATGTGAAACCAAATATACTGAAGAAGCTCTTGTTATACAGGATCTTCCATCGGCCGAAGCAAACCAAATTGCCAACAATCTCTCTAACCTCGGTCAAATCTATAACAGAGAAGACTCCTCAACAGATGTCTTGGTAAGGACATAAACAACTTCATCTCATATGAATACACACAACAATAAATACTACAAGTGAGATATCTAACTTGTTTCATTTAATTATTTATCACACGACAAAGGCAAGGGGTCAAGCTTTGGGAGATGGAATTCGCGTGCACAGTTTGGTTTTACCAGGGCTTCCCTCTAGTACAACAGTTCACTTTTCTGGTCTTGGAGAGGCATGTCCTTGGTGAACACATTTTATTCTACATGTCAATAACCAACTTACTCACAAAAATATAAAAATGACTCGTAAAATTGAAAATCATTGATTTACATTAGTCTTTCTGCGACAATTTTCAAAACTAAATTAACTGATTCAAAAGAAAGACTAATTTAAATGAAGATTTTTTATTTCACTACTTTTAAAATTTAGTCAATTTAAGGAACCAAAGTGTACTATCTTCTCATTATGAGGTCAATTTCTGCAGATTTACACCATCAAGCATGATATCACAGATGTACAATGTCTTATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGGTACCTTAA

Protein sequence

>MS.gene34456.t1

MAALSCQFHSINYLNSQMVKSRSNHSIISFVLRSRSKSRSRSRSRSNIKVVINGAAKEVGRAAVLAVTKARGMEVAGAIDTQHVGEDIGQLCGMEEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPSAVYDNATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYRNVEIVESKANANDLPSAEANQIANNLSNLGQIYNREDSSTDVLARGQALGDGIRVHSLVLPGLPSSTTVHFSGLGEIYTIKHDITDVQCLMPGLLLAIRKVVRLKVP