Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40874.t1 | XP_003614127.2 | 74.4 | 617 | 15 | 2 | 1 | 474 | 48 | 664 | 2.40E-250 | 874.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40874.t1 | Q5UNY4 | 29.8 | 504 | 266 | 14 | 16 | 449 | 4 | 489 | 1.7e-55 | 218.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40874.t1 | G7JY31 | 74.4 | 617 | 15 | 2 | 1 | 474 | 48 | 664 | 1.7e-250 | 874.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene40874 | -0.800766 | 1.24E-48 | -1.69E-46 |
| MS.gene049217 | MS.gene40874 | -0.814551 | 1.45E-51 | -1.69E-46 |
| MS.gene049281 | MS.gene40874 | 0.827856 | 1.24E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene40874 | -0.815579 | 8.60E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene40874 | -0.83961 | 1.43E-57 | -1.69E-46 |
| MS.gene049483 | MS.gene40874 | 0.834607 | 2.72E-56 | -1.69E-46 |
| MS.gene049611 | MS.gene40874 | 0.819475 | 1.14E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene40874 | -0.844577 | 6.94E-59 | -1.69E-46 |
| MS.gene050163 | MS.gene40874 | -0.815864 | 7.43E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene40874 | -0.810329 | 1.22E-50 | -1.69E-46 |
| MS.gene050173 | MS.gene40874 | 0.805018 | 1.63E-49 | -1.69E-46 |
| MS.gene050216 | MS.gene40874 | -0.830477 | 2.87E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene40874 | -0.802505 | 5.43E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene40874 | 0.811687 | 6.18E-51 | -1.69E-46 |
| MS.gene050380 | MS.gene40874 | 0.809477 | 1.86E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene40874 | 0.874145 | 8.49E-68 | -1.69E-46 |
| MS.gene050496 | MS.gene40874 | -0.806758 | 7.04E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene40874 | -0.852566 | 4.24E-61 | -1.69E-46 |
| MS.gene050612 | MS.gene40874 | -0.847392 | 1.19E-59 | -1.69E-46 |
| MS.gene050647 | MS.gene40874 | 0.807677 | 4.50E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene40874 | -0.809841 | 1.55E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene40874 | -0.800568 | 1.36E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene40874 | -0.82354 | 1.31E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene40874 | -0.824456 | 7.99E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene40874 | 0.847657 | 1.01E-59 | -1.69E-46 |
| MS.gene050986 | MS.gene40874 | -0.818631 | 1.77E-52 | -1.69E-46 |
| MS.gene051044 | MS.gene40874 | 0.807722 | 4.40E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene40874 | 0.835097 | 2.05E-56 | -1.69E-46 |
| MS.gene051127 | MS.gene40874 | 0.8718 | 5.19E-67 | -1.69E-46 |
| MS.gene051138 | MS.gene40874 | 0.839453 | 1.57E-57 | -1.69E-46 |
| MS.gene051364 | MS.gene40874 | 0.811499 | 6.79E-51 | -1.69E-46 |
| MS.gene051366 | MS.gene40874 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene05141 | MS.gene40874 | 0.834979 | 2.19E-56 | -1.69E-46 |
| MS.gene051564 | MS.gene40874 | -0.815721 | 8.00E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene40874 | -0.803976 | 2.70E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene40874 | 0.848161 | 7.31E-60 | -1.69E-46 |
| MS.gene052164 | MS.gene40874 | -0.813219 | 2.86E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene40874 | -0.80584 | 1.10E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene40874 | -0.80532 | 1.41E-49 | -1.69E-46 |
| MS.gene053069 | MS.gene40874 | 0.821484 | 3.94E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene40874 | -0.802262 | 6.10E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene40874 | -0.807821 | 4.19E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene40874 | -0.80862 | 2.83E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene40874 | 0.868898 | 4.63E-66 | -1.69E-46 |
| MS.gene053488 | MS.gene40874 | 0.813784 | 2.15E-51 | -1.69E-46 |
| MS.gene053549 | MS.gene40874 | 0.836647 | 8.28E-57 | -1.69E-46 |
| MS.gene053561 | MS.gene40874 | 0.860171 | 2.49E-63 | -1.69E-46 |
| MS.gene054054 | MS.gene40874 | 0.816282 | 5.99E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene40874 | -0.818076 | 2.37E-52 | -1.69E-46 |
| MS.gene054616 | MS.gene40874 | 0.826261 | 2.99E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene40874 | -0.819249 | 1.28E-52 | -1.69E-46 |
| MS.gene054706 | MS.gene40874 | 0.847038 | 1.49E-59 | -1.69E-46 |
| MS.gene054707 | MS.gene40874 | 0.885269 | 9.40E-72 | -1.69E-46 |
| MS.gene054708 | MS.gene40874 | 0.990868 | 1.01E-184 | -1.69E-46 |
| MS.gene05470 | MS.gene40874 | -0.802667 | 5.03E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene40874 | -0.8124 | 4.32E-51 | -1.69E-46 |
| MS.gene054959 | MS.gene40874 | 0.817348 | 3.46E-52 | -1.69E-46 |
| MS.gene055111 | MS.gene40874 | 0.806447 | 8.19E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene40874 | 0.84797 | 8.25E-60 | -1.69E-46 |
| MS.gene055139 | MS.gene40874 | 0.811603 | 6.45E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene40874 | 0.862278 | 5.67E-64 | -1.69E-46 |
| MS.gene055202 | MS.gene40874 | 0.860788 | 1.62E-63 | -1.69E-46 |
| MS.gene055362 | MS.gene40874 | -0.838425 | 2.90E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene40874 | -0.832236 | 1.06E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene40874 | -0.820189 | 7.82E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene40874 | -0.816671 | 4.90E-52 | -1.69E-46 |
| MS.gene056310 | MS.gene40874 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene056311 | MS.gene40874 | 0.824209 | 9.14E-54 | -1.69E-46 |
| MS.gene056313 | MS.gene40874 | 0.846454 | 2.15E-59 | -1.69E-46 |
| MS.gene056504 | MS.gene40874 | -0.840198 | 1.00E-57 | -1.69E-46 |
| MS.gene056550 | MS.gene40874 | 0.809141 | 2.19E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene40874 | -0.814163 | 1.77E-51 | -1.69E-46 |
| MS.gene057014 | MS.gene40874 | 0.843141 | 1.68E-58 | -1.69E-46 |
| MS.gene058068 | MS.gene40874 | 0.806679 | 7.32E-50 | -1.69E-46 |
| MS.gene058093 | MS.gene40874 | 0.802087 | 6.62E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene40874 | 0.827097 | 1.89E-54 | -1.69E-46 |
| MS.gene058109 | MS.gene40874 | 0.81343 | 2.57E-51 | -1.69E-46 |
| MS.gene058117 | MS.gene40874 | 0.813359 | 2.66E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene40874 | -0.82666 | 2.40E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene40874 | 0.833613 | 4.82E-56 | -1.69E-46 |
| MS.gene058173 | MS.gene40874 | 0.818198 | 2.22E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene40874 | 0.830095 | 3.56E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene40874 | -0.833004 | 6.84E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene40874 | -0.814195 | 1.74E-51 | -1.69E-46 |
| MS.gene058493 | MS.gene40874 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene058544 | MS.gene40874 | -0.801182 | 1.02E-48 | -1.69E-46 |
| MS.gene058603 | MS.gene40874 | 0.801566 | 8.48E-49 | -1.69E-46 |
| MS.gene058691 | MS.gene40874 | 0.802899 | 4.51E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene40874 | -0.825653 | 4.17E-54 | -1.69E-46 |
| MS.gene058840 | MS.gene40874 | 0.829953 | 3.86E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene40874 | -0.852476 | 4.50E-61 | -1.69E-46 |
| MS.gene059223 | MS.gene40874 | 0.83502 | 2.14E-56 | -1.69E-46 |
| MS.gene059367 | MS.gene40874 | -0.816752 | 4.70E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene40874 | -0.823788 | 1.15E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene40874 | -0.816688 | 4.86E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene40874 | -0.833746 | 4.47E-56 | -1.69E-46 |
| MS.gene059916 | MS.gene40874 | 0.836583 | 8.59E-57 | -1.69E-46 |
| MS.gene060482 | MS.gene40874 | -0.819376 | 1.20E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene40874 | 0.819973 | 8.77E-53 | -1.69E-46 |
| MS.gene060602 | MS.gene40874 | 0.824709 | 6.97E-54 | -1.69E-46 |
| MS.gene06074 | MS.gene40874 | 0.822829 | 1.92E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene40874 | -0.815672 | 8.20E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene40874 | -0.817736 | 2.83E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene40874 | -0.846529 | 2.05E-59 | -1.69E-46 |
| MS.gene060982 | MS.gene40874 | -0.804875 | 1.75E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40874.t1 | MTR_5g045160 | 96.774 | 372 | 11 | 1 | 104 | 474 | 293 | 664 | 0.0 | 742 |
| MS.gene40874.t1 | MTR_5g045160 | 96.117 | 103 | 4 | 0 | 1 | 103 | 48 | 150 | 6.22e-63 | 216 |
| MS.gene40874.t1 | MTR_5g045130 | 91.398 | 372 | 31 | 1 | 104 | 474 | 128 | 499 | 0.0 | 703 |
| MS.gene40874.t1 | MTR_3g103410 | 87.990 | 383 | 34 | 2 | 104 | 474 | 325 | 707 | 0.0 | 683 |
| MS.gene40874.t1 | MTR_3g103410 | 79.612 | 103 | 21 | 0 | 1 | 103 | 29 | 131 | 3.07e-52 | 187 |
| MS.gene40874.t1 | MTR_6g445440 | 87.903 | 372 | 44 | 1 | 104 | 474 | 265 | 636 | 0.0 | 675 |
| MS.gene40874.t1 | MTR_6g445440 | 92.233 | 103 | 8 | 0 | 1 | 103 | 43 | 145 | 2.03e-59 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40874.t1 | AT5G13210 | 66.585 | 410 | 111 | 4 | 91 | 474 | 264 | 673 | 0.0 | 563 |
| MS.gene40874.t1 | AT5G13210 | 68.868 | 106 | 30 | 1 | 1 | 103 | 36 | 141 | 3.97e-42 | 159 |
| MS.gene40874.t1 | AT5G43400 | 65.414 | 399 | 108 | 3 | 105 | 474 | 258 | 655 | 0.0 | 537 |
| MS.gene40874.t1 | AT5G43400 | 74.444 | 90 | 23 | 0 | 14 | 103 | 50 | 139 | 6.32e-43 | 161 |
| MS.gene40874.t1 | AT5G43390 | 63.728 | 397 | 116 | 5 | 105 | 474 | 248 | 643 | 3.95e-173 | 501 |
| MS.gene40874.t1 | AT5G43390 | 75.556 | 90 | 22 | 0 | 14 | 103 | 40 | 129 | 7.71e-44 | 164 |
| MS.gene40874.t1 | AT3G24780 | 63.402 | 388 | 103 | 4 | 91 | 439 | 316 | 703 | 2.13e-172 | 502 |
| MS.gene40874.t1 | AT3G24780 | 71.429 | 91 | 26 | 0 | 13 | 103 | 107 | 197 | 3.24e-39 | 151 |
Find 155 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTCTTTGTTGGACTTGC+CGG | 0.260625 | 5.2:+35473983 | None:intergenic |
| GAATCTGCTGACATTGTTCT+TGG | 0.284328 | 5.2:-35472461 | MS.gene40874:CDS |
| AAATCAGTCTTGCTGCTAAA+TGG | 0.287484 | 5.2:-35473431 | MS.gene40874:CDS |
| GCTTCTATGCTGCCGCTCTA+TGG | 0.294484 | 5.2:-35473962 | MS.gene40874:CDS |
| CTTCTCCTTATAAAACTTCA+TGG | 0.297463 | 5.2:+35473170 | None:intergenic |
| CTTGCTGTGTGTGATGTGTC+TGG | 0.301225 | 5.2:-35472952 | MS.gene40874:CDS |
| ATATGCGATCAAACACCTTC+TGG | 0.312936 | 5.2:+35472737 | None:intergenic |
| GAGTTGCCTGAGGTGTTTAT+TGG | 0.349776 | 5.2:-35473240 | MS.gene40874:CDS |
| GGGGTTTGATTCCTTACAAT+AGG | 0.355708 | 5.2:-35473206 | MS.gene40874:CDS |
| TCAACCCCATCGGTGGGTTT+CGG | 0.356465 | 5.2:+35474180 | None:intergenic |
| ATCAAGCGTCTGCAAACTCT+TGG | 0.365158 | 5.2:-35472636 | MS.gene40874:CDS |
| AGGAGGCGCATTATGCTTAT+AGG | 0.369882 | 5.2:-35473314 | MS.gene40874:CDS |
| TGTTTATTGGTGCTAATCAA+TGG | 0.374653 | 5.2:-35473227 | MS.gene40874:CDS |
| GCAGCTTCCATGGCTTCTAC+AGG | 0.387857 | 5.2:+35472418 | None:intergenic |
| CCTAGTGATTGCTTGGTAAT+CGG | 0.388642 | 5.2:+35472609 | None:intergenic |
| GGAGAGGTTTGAGAAGTACT+TGG | 0.389397 | 5.2:-35473130 | MS.gene40874:CDS |
| GCCATGGAAGCTGCCATCGC+TGG | 0.399741 | 5.2:-35472409 | MS.gene40874:CDS |
| GTGTGTAGCATTGGGGTTGT+TGG | 0.401844 | 5.2:-35472902 | MS.gene40874:CDS |
| GTTTGTGAGGAACATGGATT+GGG | 0.401906 | 5.2:-35472776 | MS.gene40874:CDS |
| AGCATAGAAGCCTTCTTTGT+TGG | 0.404217 | 5.2:+35473974 | None:intergenic |
| GGGTTTGATTCCTTACAATA+GGG | 0.405295 | 5.2:-35473205 | MS.gene40874:CDS |
| GAAGGTGTTTGATCGCATAT+TGG | 0.405938 | 5.2:-35472734 | MS.gene40874:CDS |
| GGAGGCGCATTATGCTTATA+GGG | 0.411872 | 5.2:-35473313 | MS.gene40874:CDS |
| GTTTATTGGTGCTAATCAAT+GGG | 0.412509 | 5.2:-35473226 | MS.gene40874:CDS |
| CTTTCTGAGTGGATGGCACC+GGG | 0.421088 | 5.2:+35472512 | None:intergenic |
| CTCCGTGGTGTTCGTGGTAC+CGG | 0.428319 | 5.2:-35474002 | MS.gene40874:CDS |
| CACAACTAGTTTCTGATACT+CGG | 0.428515 | 5.2:+35472384 | None:intergenic |
| TATACTTCCTAGTGATTGCT+TGG | 0.431774 | 5.2:+35472602 | None:intergenic |
| AGTTTGTGAGGAACATGGAT+TGG | 0.432352 | 5.2:-35472777 | MS.gene40874:CDS |
| ATGGAGGTGTGTGTAGCATT+GGG | 0.432777 | 5.2:-35472910 | MS.gene40874:CDS |
| TTACAATAGGGTTGCTTCTG+TGG | 0.434673 | 5.2:-35473193 | MS.gene40874:CDS |
| CCGTTGACTCTTCCTTTGAT+CGG | 0.435307 | 5.2:-35473401 | MS.gene40874:CDS |
| ACTAGGAAGTATAGAAAGAA+AGG | 0.441720 | 5.2:-35472592 | MS.gene40874:CDS |
| GCCAGCGATGGCAGCTTCCA+TGG | 0.443302 | 5.2:+35472408 | None:intergenic |
| GTTCCTCACAAACTTTGTCT+TGG | 0.445968 | 5.2:+35472786 | None:intergenic |
| GTGAAGGAACATTGGTAGCT+AGG | 0.448466 | 5.2:+35473916 | None:intergenic |
| ACAACTAGTTTCTGATACTC+GGG | 0.457651 | 5.2:+35472385 | None:intergenic |
| TGTAACCTCCGTGGTGTTCG+TGG | 0.460467 | 5.2:-35474008 | MS.gene40874:CDS |
| CGTTGATGATTTGCTCAAGA+AGG | 0.468757 | 5.2:-35472992 | MS.gene40874:CDS |
| CCTTTCTGAGTGGATGGCAC+CGG | 0.470831 | 5.2:+35472511 | None:intergenic |
| TATGGAGGTGTGTGTAGCAT+TGG | 0.471438 | 5.2:-35472911 | MS.gene40874:CDS |
| ATAGGGTTCGTGATCGTTTG+AGG | 0.471872 | 5.2:-35473296 | MS.gene40874:CDS |
| TCTAGCAAAAGAATTGAAGT+TGG | 0.482544 | 5.2:+35474205 | None:intergenic |
| GCCACTCCTTTCTGAGTGGA+TGG | 0.483109 | 5.2:+35472505 | None:intergenic |
| TTGCTGTGTGTGATGTGTCT+GGG | 0.483780 | 5.2:-35472951 | MS.gene40874:CDS |
| GCCTCAGCTTCATGTGATTG+AGG | 0.484160 | 5.2:-35472824 | MS.gene40874:CDS |
| AGGAGGATCAGATGATTAAG+AGG | 0.485373 | 5.2:-35472687 | MS.gene40874:CDS |
| AAGTATAGAAAGAAAGGGTA+TGG | 0.487906 | 5.2:-35472586 | MS.gene40874:CDS |
| TACTTGGAGGATGTGAAGGC+AGG | 0.488941 | 5.2:-35473114 | MS.gene40874:CDS |
| AGTGTCTCAGAAGGAGTATC+AGG | 0.489014 | 5.2:+35474089 | None:intergenic |
| GTAATAACCTTCCCTTTCCA+TGG | 0.491644 | 5.2:+35472859 | None:intergenic |
| GTATCAGAAACTAGTTGTGC+TGG | 0.495109 | 5.2:-35472380 | MS.gene40874:CDS |
| AATGCTACACACACCTCCAT+AGG | 0.501130 | 5.2:+35472913 | None:intergenic |
| GAGTATGCATGGGACCCCTA+TGG | 0.506823 | 5.2:-35472929 | MS.gene40874:CDS |
| GGAAGGTTATTACTTTCAGC+AGG | 0.508350 | 5.2:-35472849 | MS.gene40874:CDS |
| ACAGAAGCAACCCTATTGTA+AGG | 0.510787 | 5.2:+35473195 | None:intergenic |
| GGAATATGAAGGTGTGGAGG+AGG | 0.511393 | 5.2:-35473331 | MS.gene40874:CDS |
| CCTCAGCTTCATGTGATTGA+GGG | 0.511737 | 5.2:-35472823 | MS.gene40874:CDS |
| CTGATACTCGGGGCCAGCGA+TGG | 0.513732 | 5.2:+35472396 | None:intergenic |
| CACTCAGAAAGGAGTGGCAC+TGG | 0.513905 | 5.2:-35472500 | MS.gene40874:CDS |
| TCAAGCGTCTGCAAACTCTT+GGG | 0.514244 | 5.2:-35472635 | MS.gene40874:CDS |
| TGCCAAGAGGATCTTCCCTC+GGG | 0.516133 | 5.2:-35473355 | MS.gene40874:CDS |
| ATTATAGAGTCTTTGCGTGA+TGG | 0.519156 | 5.2:-35473051 | MS.gene40874:CDS |
| CTCCCGAGGGAAGATCCTCT+TGG | 0.520806 | 5.2:+35473353 | None:intergenic |
| CAGCTTCCATGGCTTCTACA+GGG | 0.521562 | 5.2:+35472419 | None:intergenic |
| GAGGTTTGAGAAGTACTTGG+AGG | 0.521875 | 5.2:-35473127 | MS.gene40874:CDS |
| TGAAGGAACATTGGTAGCTA+GGG | 0.522147 | 5.2:+35473917 | None:intergenic |
| ATATTGGATGTGGCTGTCAA+TGG | 0.529469 | 5.2:-35472718 | MS.gene40874:CDS |
| TCACCAACGTTTCTCTCCAC+TGG | 0.531788 | 5.2:-35474146 | MS.gene40874:CDS |
| GGAGGTTACAGACGAGTTTG+AGG | 0.532302 | 5.2:+35474021 | None:intergenic |
| ATGCTACACACACCTCCATA+GGG | 0.534414 | 5.2:+35472914 | None:intergenic |
| GTTGATGATTTGCTCAAGAA+GGG | 0.536020 | 5.2:-35472991 | MS.gene40874:CDS |
| GAGGTTACAGACGAGTTTGA+GGG | 0.536086 | 5.2:+35474022 | None:intergenic |
| GATGTGTCTGGGAGTATGCA+TGG | 0.541073 | 5.2:-35472940 | MS.gene40874:CDS |
| ACCGGCAAGTCCAACAAAGA+AGG | 0.544742 | 5.2:-35473984 | MS.gene40874:CDS |
| TCGAGAGGCTCAAACTAGCT+TGG | 0.545154 | 5.2:-35474064 | MS.gene40874:CDS |
| AAAGGAGTGGCACTGGTAAG+TGG | 0.549583 | 5.2:-35472493 | MS.gene40874:CDS |
| GACAAAGTTTGTGAGGAACA+TGG | 0.551414 | 5.2:-35472782 | MS.gene40874:CDS |
| TTGCCAAGAGGATCTTCCCT+CGG | 0.551799 | 5.2:-35473356 | MS.gene40874:CDS |
| TGAACGAGGAACCATGGAAA+GGG | 0.554458 | 5.2:-35472870 | MS.gene40874:CDS |
| TATTGGATGTGGCTGTCAAT+GGG | 0.560043 | 5.2:-35472717 | MS.gene40874:CDS |
| CCGATTACCAAGCAATCACT+AGG | 0.565104 | 5.2:-35472609 | MS.gene40874:CDS |
| CCCTCAATCACATGAAGCTG+AGG | 0.568852 | 5.2:+35472823 | None:intergenic |
| CCGGTGCCATCCACTCAGAA+AGG | 0.571959 | 5.2:-35472511 | MS.gene40874:CDS |
| GTTTGATCGCATATTGGATG+TGG | 0.574432 | 5.2:-35472728 | MS.gene40874:CDS |
| CTAGGAAGTATAGAAAGAAA+GGG | 0.575902 | 5.2:-35472591 | MS.gene40874:CDS |
| AGAAACCGAAACCCACCGAT+GGG | 0.579222 | 5.2:-35474185 | MS.gene40874:CDS |
| GGGAAGACTACTATTGCTGC+TGG | 0.579975 | 5.2:-35473093 | MS.gene40874:CDS |
| CAGTGCCACTCCTTTCTGAG+TGG | 0.580391 | 5.2:+35472501 | None:intergenic |
| GAGAGACTCGAAGGCCACCC+CGG | 0.584902 | 5.2:-35472530 | MS.gene40874:CDS |
| AGGGAAGATCCTCTTGGCAA+TGG | 0.584939 | 5.2:+35473359 | None:intergenic |
| TTGGAATCTGAGAGACTCGA+AGG | 0.585593 | 5.2:-35472539 | MS.gene40874:CDS |
| GATCTTTGTCTTTAGTGACA+TGG | 0.587705 | 5.2:-35472665 | MS.gene40874:CDS |
| TTTCAGTCAACCCCATCGGT+GGG | 0.587798 | 5.2:+35474174 | None:intergenic |
| TTGAACGAGGAACCATGGAA+AGG | 0.588133 | 5.2:-35472871 | MS.gene40874:CDS |
| TTCCCTCGGGAGGAATATGA+AGG | 0.591428 | 5.2:-35473342 | MS.gene40874:CDS |
| TATAAGCCCTGTAGAAGCCA+TGG | 0.596604 | 5.2:-35472425 | MS.gene40874:CDS |
| TCAAAGGAAGAGTCAACGGA+AGG | 0.598171 | 5.2:+35473405 | None:intergenic |
| CTCAGCTTCATGTGATTGAG+GGG | 0.599232 | 5.2:-35472822 | MS.gene40874:CDS |
| ACATTGTTCTTGGATAATGA+AGG | 0.599605 | 5.2:-35472451 | MS.gene40874:CDS |
| TTTATTGGTGCTAATCAATG+GGG | 0.599749 | 5.2:-35473225 | MS.gene40874:CDS |
| TTTGTGAGGAACATGGATTG+GGG | 0.600633 | 5.2:-35472775 | MS.gene40874:CDS |
| CTGAATTGAACGAGGAACCA+TGG | 0.603342 | 5.2:-35472876 | MS.gene40874:CDS |
| GAAGTACTTGGAGGATGTGA+AGG | 0.604063 | 5.2:-35473118 | MS.gene40874:CDS |
| ACTTGGAGGATGTGAAGGCA+GGG | 0.604217 | 5.2:-35473113 | MS.gene40874:CDS |
| TGTGTTGGTGCCGTTGAGGA+AGG | 0.604572 | 5.2:-35473268 | MS.gene40874:CDS |
| GTGAAGTGGCTGAGTTGCAG+TGG | 0.607162 | 5.2:-35473023 | MS.gene40874:CDS |
| CCGATCAAAGGAAGAGTCAA+CGG | 0.608539 | 5.2:+35473401 | None:intergenic |
| GGTGCCGTTGAGGAAGGTGT+TGG | 0.609929 | 5.2:-35473262 | MS.gene40874:CDS |
| GAGTCTTTGCGTGATGGAGA+TGG | 0.610505 | 5.2:-35473045 | MS.gene40874:CDS |
| CTCTCGACGAGTGTCTCAGA+AGG | 0.610855 | 5.2:+35474080 | None:intergenic |
| CACCTTCATATTCCTCCCGA+GGG | 0.610961 | 5.2:+35473340 | None:intergenic |
| ATGTGTCTGGGAGTATGCAT+GGG | 0.615466 | 5.2:-35472939 | MS.gene40874:CDS |
| CTGAGTGGATGGCACCGGGG+TGG | 0.616153 | 5.2:+35472516 | None:intergenic |
| TAACAGCGTTGACCGATCAA+AGG | 0.617986 | 5.2:+35473389 | None:intergenic |
| TGCTCAAGAAGGGAAAGATG+AGG | 0.619614 | 5.2:-35472981 | MS.gene40874:CDS |
| GGCTGTCAATGGGAATCTCA+AGG | 0.621591 | 5.2:-35472707 | MS.gene40874:CDS |
| TAGAAACCGAAACCCACCGA+TGG | 0.622403 | 5.2:-35474186 | MS.gene40874:CDS |
| ACACCTTCATATTCCTCCCG+AGG | 0.626089 | 5.2:+35473339 | None:intergenic |
| TTAGCACCAATAAACACCTC+AGG | 0.626398 | 5.2:+35473234 | None:intergenic |
| AACTCCAACACCTTCCTCAA+CGG | 0.630137 | 5.2:+35473258 | None:intergenic |
| TTGTGAGGAACATGGATTGG+GGG | 0.639683 | 5.2:-35472774 | MS.gene40874:CDS |
| CAAGAGGATCTTCCCTCGGG+AGG | 0.641432 | 5.2:-35473352 | MS.gene40874:CDS |
| AGTCCAAGACAAAGTTTGTG+AGG | 0.642724 | 5.2:-35472789 | MS.gene40874:CDS |
| TCGGGAGGAATATGAAGGTG+TGG | 0.645333 | 5.2:-35473337 | MS.gene40874:CDS |
| GGAAGAAGAAATCGAGACAA+GGG | 0.645821 | 5.2:+35474120 | None:intergenic |
| TGGAGGTGTGTGTAGCATTG+GGG | 0.646940 | 5.2:-35472909 | MS.gene40874:CDS |
| AAGGAGTATCAGGAACAACA+TGG | 0.647046 | 5.2:+35474099 | None:intergenic |
| TCGTTTGAGGAAAGATGTGT+TGG | 0.647723 | 5.2:-35473283 | MS.gene40874:CDS |
| GAAGGTGTTGGAGTTGCCTG+AGG | 0.648237 | 5.2:-35473250 | MS.gene40874:CDS |
| CTTCTGAGACACTCGTCGAG+AGG | 0.650304 | 5.2:-35474079 | MS.gene40874:CDS |
| AAGATGTGTTGGTGCCGTTG+AGG | 0.652976 | 5.2:-35473272 | MS.gene40874:CDS |
| CAAAGGAAGAGTCAACGGAA+GGG | 0.653236 | 5.2:+35473406 | None:intergenic |
| CGAGGAACCATGGAAAGGGA+AGG | 0.654288 | 5.2:-35472866 | MS.gene40874:CDS |
| TATGCATGGGACCCCTATGG+AGG | 0.657200 | 5.2:-35472926 | MS.gene40874:CDS |
| TGGAAGAAGAAATCGAGACA+AGG | 0.663800 | 5.2:+35474119 | None:intergenic |
| GCGTGATGGAGATGGTGAAG+TGG | 0.668727 | 5.2:-35473037 | MS.gene40874:CDS |
| GATGAACACTGATTTCCAGA+AGG | 0.669878 | 5.2:-35472752 | MS.gene40874:CDS |
| AAAGACTCTATAATCTCGTG+AGG | 0.670125 | 5.2:+35473060 | None:intergenic |
| ATCGAGACAAGGGTTACCAG+TGG | 0.673142 | 5.2:+35474130 | None:intergenic |
| TCAGCTTCATGTGATTGAGG+GGG | 0.673206 | 5.2:-35472821 | MS.gene40874:CDS |
| GTTACAGACGAGTTTGAGGG+CGG | 0.674635 | 5.2:+35474025 | None:intergenic |
| GCCATCCACTCAGAAAGGAG+TGG | 0.675952 | 5.2:-35472506 | MS.gene40874:CDS |
| GGAGGAATATGAAGGTGTGG+AGG | 0.684289 | 5.2:-35473334 | MS.gene40874:CDS |
| TGCTACACACACCTCCATAG+GGG | 0.689495 | 5.2:+35472915 | None:intergenic |
| TTACCAGTGGAGAGAAACGT+TGG | 0.690822 | 5.2:+35474143 | None:intergenic |
| TTTCTGAGTGGATGGCACCG+GGG | 0.698885 | 5.2:+35472513 | None:intergenic |
| CAACTAGTTTCTGATACTCG+GGG | 0.701259 | 5.2:+35472386 | None:intergenic |
| TGCCGGTACCACGAACACCA+CGG | 0.707609 | 5.2:+35474000 | None:intergenic |
| TATGTGAGACCATTGCCAAG+AGG | 0.711412 | 5.2:-35473368 | MS.gene40874:CDS |
| GAAACCGAAACCCACCGATG+GGG | 0.722976 | 5.2:-35474184 | MS.gene40874:CDS |
| AAACTCGTCTGTAACCTCCG+TGG | 0.731806 | 5.2:-35474017 | MS.gene40874:CDS |
| GTTGGTGTCTGAATTGAACG+AGG | 0.758083 | 5.2:-35472884 | MS.gene40874:CDS |
| TGTCAATGGGAATCTCAAGG+AGG | 0.758838 | 5.2:-35472704 | MS.gene40874:CDS |
| CGGTACCACGAACACCACGG+AGG | 0.805564 | 5.2:+35474003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATCATGAAGAAACTTGAAAT+TGG | + | chr5.2:35473066-35473085 | None:intergenic | 25.0% |
| ! | TCATGAAGAAACTTGAAATT+GGG | + | chr5.2:35473065-35473084 | None:intergenic | 25.0% |
| ! | TTATTCCTCTCCTTAAAAAA+GGG | + | chr5.2:35472836-35472855 | None:intergenic | 25.0% |
| ! | TTTATTCCTCTCCTTAAAAA+AGG | + | chr5.2:35472837-35472856 | None:intergenic | 25.0% |
| AAGTATAGAAAGAAAGGGTA+TGG | - | chr5.2:35474001-35474020 | MS.gene40874:CDS | 30.0% | |
| ACATTGTTCTTGGATAATGA+AGG | - | chr5.2:35474136-35474155 | MS.gene40874:CDS | 30.0% | |
| AGATTCCAAAAAACTATCTG+AGG | + | chr5.2:35474037-35474056 | None:intergenic | 30.0% | |
| CTTCTCCTTATAAAACTTCA+TGG | + | chr5.2:35473420-35473439 | None:intergenic | 30.0% | |
| TATTCCTCTCCTTAAAAAAG+GGG | + | chr5.2:35472835-35472854 | None:intergenic | 30.0% | |
| TCTAGCAAAAGAATTGAAGT+TGG | + | chr5.2:35472385-35472404 | None:intergenic | 30.0% | |
| ! | ACTAGGAAGTATAGAAAGAA+AGG | - | chr5.2:35473995-35474014 | MS.gene40874:CDS | 30.0% |
| ! | ATTTTCATGAAACCATAGAG+CGG | + | chr5.2:35472640-35472659 | None:intergenic | 30.0% |
| ! | CTAGGAAGTATAGAAAGAAA+GGG | - | chr5.2:35473996-35474015 | MS.gene40874:CDS | 30.0% |
| ! | TGAAGATGAAGATTTCCTTT+TGG | + | chr5.2:35472808-35472827 | None:intergenic | 30.0% |
| !! | GTTTATTGGTGCTAATCAAT+GGG | - | chr5.2:35473361-35473380 | MS.gene40874:CDS | 30.0% |
| !! | TGTTTATTGGTGCTAATCAA+TGG | - | chr5.2:35473360-35473379 | MS.gene40874:CDS | 30.0% |
| !! | TTTATTGGTGCTAATCAATG+GGG | - | chr5.2:35473362-35473381 | MS.gene40874:CDS | 30.0% |
| !! | TTTTGCTGATTGTTTGAAGA+AGG | - | chr5.2:35473100-35473119 | MS.gene40874:CDS | 30.0% |
| !!! | ATCTCGAGTTTTTGAAATCT+GGG | - | chr5.2:35473123-35473142 | MS.gene40874:CDS | 30.0% |
| !!! | GAAGTTTTTGAAGCATGATA+AGG | - | chr5.2:35473436-35473455 | MS.gene40874:CDS | 30.0% |
| AAAGACTCTATAATCTCGTG+AGG | + | chr5.2:35473530-35473549 | None:intergenic | 35.0% | |
| AAAGGAAATCTGGATCCAAA+AGG | - | chr5.2:35472790-35472809 | MS.gene40874:CDS | 35.0% | |
| AAATCAGTCTTGCTGCTAAA+TGG | - | chr5.2:35473156-35473175 | MS.gene40874:CDS | 35.0% | |
| ATTATAGAGTCTTTGCGTGA+TGG | - | chr5.2:35473536-35473555 | MS.gene40874:intron | 35.0% | |
| CAACAAGAACTACAACAACA+AGG | - | chr5.2:35472878-35472897 | MS.gene40874:CDS | 35.0% | |
| GATCTTTGTCTTTAGTGACA+TGG | - | chr5.2:35473922-35473941 | MS.gene40874:intron | 35.0% | |
| GGGTTTGATTCCTTACAATA+GGG | - | chr5.2:35473382-35473401 | MS.gene40874:CDS | 35.0% | |
| TATACTTCCTAGTGATTGCT+TGG | + | chr5.2:35473988-35474007 | None:intergenic | 35.0% | |
| TGTTGTTGTAGTTCTTGTTG+TGG | + | chr5.2:35472878-35472897 | None:intergenic | 35.0% | |
| ! | ACAACTAGTTTCTGATACTC+GGG | + | chr5.2:35474205-35474224 | None:intergenic | 35.0% |
| ! | CACAACTAGTTTCTGATACT+CGG | + | chr5.2:35474206-35474225 | None:intergenic | 35.0% |
| !! | ATCAACAAGCTTTTTAGCCA+AGG | + | chr5.2:35473027-35473046 | None:intergenic | 35.0% |
| !! | GTTGATGATTTGCTCAAGAA+GGG | - | chr5.2:35473596-35473615 | MS.gene40874:intron | 35.0% |
| !! | TGTGGCCATGAAGTTTTATA+AGG | - | chr5.2:35473412-35473431 | MS.gene40874:CDS | 35.0% |
| !!! | CTTCATCAACCCCTTTTTTA+AGG | - | chr5.2:35472823-35472842 | MS.gene40874:CDS | 35.0% |
| !!! | GATCTCGAGTTTTTGAAATC+TGG | - | chr5.2:35473122-35473141 | MS.gene40874:CDS | 35.0% |
| !!! | TTTTGAAGCATGATAAGGAG+AGG | - | chr5.2:35473441-35473460 | MS.gene40874:CDS | 35.0% |
| AAGGACGTCAAGGATAACAA+AGG | - | chr5.2:35472897-35472916 | MS.gene40874:CDS | 40.0% | |
| AAGGATAACAAAGGGTGGAA+GGG | - | chr5.2:35472906-35472925 | MS.gene40874:CDS | 40.0% | |
| ACAGAAGCAACCCTATTGTA+AGG | + | chr5.2:35473395-35473414 | None:intergenic | 40.0% | |
| AGAAAGAAGAGTGGATGGAA+AGG | - | chr5.2:35472772-35472791 | MS.gene40874:CDS | 40.0% | |
| AGCATAGAAGCCTTCTTTGT+TGG | + | chr5.2:35472616-35472635 | None:intergenic | 40.0% | |
| AGGACGTCAAGGATAACAAA+GGG | - | chr5.2:35472898-35472917 | MS.gene40874:CDS | 40.0% | |
| AGGAGGATCAGATGATTAAG+AGG | - | chr5.2:35473900-35473919 | MS.gene40874:intron | 40.0% | |
| AGTCCAAGACAAAGTTTGTG+AGG | - | chr5.2:35473798-35473817 | MS.gene40874:intron | 40.0% | |
| AGTTTGTGAGGAACATGGAT+TGG | - | chr5.2:35473810-35473829 | MS.gene40874:intron | 40.0% | |
| ATATGCGATCAAACACCTTC+TGG | + | chr5.2:35473853-35473872 | None:intergenic | 40.0% | |
| ATATTGGATGTGGCTGTCAA+TGG | - | chr5.2:35473869-35473888 | MS.gene40874:intron | 40.0% | |
| GAATCTGCTGACATTGTTCT+TGG | - | chr5.2:35474126-35474145 | MS.gene40874:CDS | 40.0% | |
| GACAAAGTTTGTGAGGAACA+TGG | - | chr5.2:35473805-35473824 | MS.gene40874:intron | 40.0% | |
| GGAAGAAGAAATCGAGACAA+GGG | + | chr5.2:35472470-35472489 | None:intergenic | 40.0% | |
| GGAAGGTTATTACTTTCAGC+AGG | - | chr5.2:35473738-35473757 | MS.gene40874:intron | 40.0% | |
| GGGGTTTGATTCCTTACAAT+AGG | - | chr5.2:35473381-35473400 | MS.gene40874:CDS | 40.0% | |
| GTAATAACCTTCCCTTTCCA+TGG | + | chr5.2:35473731-35473750 | None:intergenic | 40.0% | |
| GTATCAGAAACTAGTTGTGC+TGG | - | chr5.2:35474207-35474226 | MS.gene40874:CDS | 40.0% | |
| GTTCCTCACAAACTTTGTCT+TGG | + | chr5.2:35473804-35473823 | None:intergenic | 40.0% | |
| GTTTGATCGCATATTGGATG+TGG | - | chr5.2:35473859-35473878 | MS.gene40874:intron | 40.0% | |
| GTTTGTGAGGAACATGGATT+GGG | - | chr5.2:35473811-35473830 | MS.gene40874:intron | 40.0% | |
| TATTGGATGTGGCTGTCAAT+GGG | - | chr5.2:35473870-35473889 | MS.gene40874:intron | 40.0% | |
| TCGTTTGAGGAAAGATGTGT+TGG | - | chr5.2:35473304-35473323 | MS.gene40874:CDS | 40.0% | |
| TGGAAGAAGAAATCGAGACA+AGG | + | chr5.2:35472471-35472490 | None:intergenic | 40.0% | |
| TTACAATAGGGTTGCTTCTG+TGG | - | chr5.2:35473394-35473413 | MS.gene40874:CDS | 40.0% | |
| TTAGCACCAATAAACACCTC+AGG | + | chr5.2:35473356-35473375 | None:intergenic | 40.0% | |
| ! | ATGTTTTCAGTCAACCCCAT+CGG | + | chr5.2:35472420-35472439 | None:intergenic | 40.0% |
| ! | CAACTAGTTTCTGATACTCG+GGG | + | chr5.2:35474204-35474223 | None:intergenic | 40.0% |
| ! | CCTAGTGATTGCTTGGTAAT+CGG | + | chr5.2:35473981-35474000 | None:intergenic | 40.0% |
| ! | TGAAGGAACATTGGTAGCTA+GGG | + | chr5.2:35472673-35472692 | None:intergenic | 40.0% |
| ! | TGTTGTAGTTCTTGTTGTGG+TGG | + | chr5.2:35472875-35472894 | None:intergenic | 40.0% |
| ! | TTTGTGAGGAACATGGATTG+GGG | - | chr5.2:35473812-35473831 | MS.gene40874:intron | 40.0% |
| !! | AAGGAGTATCAGGAACAACA+TGG | + | chr5.2:35472491-35472510 | None:intergenic | 40.0% |
| !! | ACATTGGTAGCTAGGGTTTT+AGG | + | chr5.2:35472666-35472685 | None:intergenic | 40.0% |
| !! | AGCAGCAAGACTGATTTTTG+TGG | + | chr5.2:35473153-35473172 | None:intergenic | 40.0% |
| !! | ATGCTTTGAAGGAAGAGAAG+AGG | - | chr5.2:35472997-35473016 | MS.gene40874:CDS | 40.0% |
| !! | CATTGGTAGCTAGGGTTTTA+GGG | + | chr5.2:35472665-35472684 | None:intergenic | 40.0% |
| !! | CGTTGATGATTTGCTCAAGA+AGG | - | chr5.2:35473595-35473614 | MS.gene40874:intron | 40.0% |
| !! | GAAGGTGTTTGATCGCATAT+TGG | - | chr5.2:35473853-35473872 | MS.gene40874:intron | 40.0% |
| !! | GATGAACACTGATTTCCAGA+AGG | - | chr5.2:35473835-35473854 | MS.gene40874:intron | 40.0% |
| !! | GCAGCAAGACTGATTTTTGT+GGG | + | chr5.2:35473152-35473171 | None:intergenic | 40.0% |
| !!! | CTGTGCCTCAGATAGTTTTT+TGG | - | chr5.2:35474029-35474048 | MS.gene40874:CDS | 40.0% |
| !!! | TCAACCCCTTTTTTAAGGAG+AGG | - | chr5.2:35472828-35472847 | MS.gene40874:CDS | 40.0% |
| AACCTTCGAGAAGACGATAG+AGG | + | chr5.2:35472734-35472753 | None:intergenic | 45.0% | |
| AACGAGAGTTAAGGCTCAGA+AGG | - | chr5.2:35472965-35472984 | MS.gene40874:CDS | 45.0% | |
| AACGCAGAAAGAAGAGTGGA+TGG | - | chr5.2:35472767-35472786 | MS.gene40874:CDS | 45.0% | |
| AACTCCAACACCTTCCTCAA+CGG | + | chr5.2:35473332-35473351 | None:intergenic | 45.0% | |
| AATGCTACACACACCTCCAT+AGG | + | chr5.2:35473677-35473696 | None:intergenic | 45.0% | |
| ACGTCAAGGATAACAAAGGG+TGG | - | chr5.2:35472901-35472920 | MS.gene40874:CDS | 45.0% | |
| AGAAGACGATAGAGGATCTC+AGG | + | chr5.2:35472726-35472745 | None:intergenic | 45.0% | |
| AGACTCCATCGTGACTAAAG+AGG | - | chr5.2:35472938-35472957 | MS.gene40874:CDS | 45.0% | |
| ATAGGGTTCGTGATCGTTTG+AGG | - | chr5.2:35473291-35473310 | MS.gene40874:CDS | 45.0% | |
| ATCAAGCGTCTGCAAACTCT+TGG | - | chr5.2:35473951-35473970 | MS.gene40874:CDS | 45.0% | |
| ATCCTCTATCGTCTTCTCGA+AGG | - | chr5.2:35472729-35472748 | MS.gene40874:CDS | 45.0% | |
| ATGCTACACACACCTCCATA+GGG | + | chr5.2:35473676-35473695 | None:intergenic | 45.0% | |
| CAAAGGAAGAGTCAACGGAA+GGG | + | chr5.2:35473184-35473203 | None:intergenic | 45.0% | |
| CAAGGATAACAAAGGGTGGA+AGG | - | chr5.2:35472905-35472924 | MS.gene40874:CDS | 45.0% | |
| CCGATCAAAGGAAGAGTCAA+CGG | + | chr5.2:35473189-35473208 | None:intergenic | 45.0% | |
| CCGATTACCAAGCAATCACT+AGG | - | chr5.2:35473978-35473997 | MS.gene40874:CDS | 45.0% | |
| CCTCAGCTTCATGTGATTGA+GGG | - | chr5.2:35473764-35473783 | MS.gene40874:intron | 45.0% | |
| CTACAACAACAAGGACGTCA+AGG | - | chr5.2:35472887-35472906 | MS.gene40874:CDS | 45.0% | |
| CTCAGCTTCATGTGATTGAG+GGG | - | chr5.2:35473765-35473784 | MS.gene40874:intron | 45.0% | |
| CTGAATTGAACGAGGAACCA+TGG | - | chr5.2:35473711-35473730 | MS.gene40874:intron | 45.0% | |
| GAAGACGATAGAGGATCTCA+GGG | + | chr5.2:35472725-35472744 | None:intergenic | 45.0% | |
| GAGGTTACAGACGAGTTTGA+GGG | + | chr5.2:35472568-35472587 | None:intergenic | 45.0% | |
| GAGTGGATGGAAAGGAAATC+TGG | - | chr5.2:35472780-35472799 | MS.gene40874:CDS | 45.0% | |
| GCAAAACGCAGAAAGAAGAG+TGG | - | chr5.2:35472763-35472782 | MS.gene40874:CDS | 45.0% | |
| GGAAACTGCTCATGCTTTGA+AGG | - | chr5.2:35472986-35473005 | MS.gene40874:CDS | 45.0% | |
| GTTAGCGAGTGAAGGAACAT+TGG | + | chr5.2:35472682-35472701 | None:intergenic | 45.0% | |
| GTTCCTTCACTCGCTAACTT+TGG | - | chr5.2:35472684-35472703 | MS.gene40874:CDS | 45.0% | |
| TAGCCAAAGTTAGCGAGTGA+AGG | + | chr5.2:35472690-35472709 | None:intergenic | 45.0% | |
| TATAAGCCCTGTAGAAGCCA+TGG | - | chr5.2:35474162-35474181 | MS.gene40874:CDS | 45.0% | |
| TATGTGAGACCATTGCCAAG+AGG | - | chr5.2:35473219-35473238 | MS.gene40874:CDS | 45.0% | |
| TCAAAGGAAGAGTCAACGGA+AGG | + | chr5.2:35473185-35473204 | None:intergenic | 45.0% | |
| TCAAGCGTCTGCAAACTCTT+GGG | - | chr5.2:35473952-35473971 | MS.gene40874:CDS | 45.0% | |
| TCAGCTTCATGTGATTGAGG+GGG | - | chr5.2:35473766-35473785 | MS.gene40874:intron | 45.0% | |
| TGAACGAGGAACCATGGAAA+GGG | - | chr5.2:35473717-35473736 | MS.gene40874:intron | 45.0% | |
| TGCTCAAGAAGGGAAAGATG+AGG | - | chr5.2:35473606-35473625 | MS.gene40874:intron | 45.0% | |
| TGTCAATGGGAATCTCAAGG+AGG | - | chr5.2:35473883-35473902 | MS.gene40874:intron | 45.0% | |
| TTACCAGTGGAGAGAAACGT+TGG | + | chr5.2:35472447-35472466 | None:intergenic | 45.0% | |
| TTGAACGAGGAACCATGGAA+AGG | - | chr5.2:35473716-35473735 | MS.gene40874:intron | 45.0% | |
| TTGCTGTGTGTGATGTGTCT+GGG | - | chr5.2:35473636-35473655 | MS.gene40874:intron | 45.0% | |
| TTGGAATCTGAGAGACTCGA+AGG | - | chr5.2:35474048-35474067 | MS.gene40874:CDS | 45.0% | |
| ! | AGGAGGCGCATTATGCTTAT+AGG | - | chr5.2:35473273-35473292 | MS.gene40874:CDS | 45.0% |
| ! | ATGGAGGTGTGTGTAGCATT+GGG | - | chr5.2:35473677-35473696 | MS.gene40874:intron | 45.0% |
| ! | ATGTGTCTGGGAGTATGCAT+GGG | - | chr5.2:35473648-35473667 | MS.gene40874:intron | 45.0% |
| ! | GAAGTACTTGGAGGATGTGA+AGG | - | chr5.2:35473469-35473488 | MS.gene40874:CDS | 45.0% |
| ! | GAGTTGCCTGAGGTGTTTAT+TGG | - | chr5.2:35473347-35473366 | MS.gene40874:CDS | 45.0% |
| ! | GGAGGCGCATTATGCTTATA+GGG | - | chr5.2:35473274-35473293 | MS.gene40874:CDS | 45.0% |
| ! | GTGAAGGAACATTGGTAGCT+AGG | + | chr5.2:35472674-35472693 | None:intergenic | 45.0% |
| ! | GTTGGTGTCTGAATTGAACG+AGG | - | chr5.2:35473703-35473722 | MS.gene40874:intron | 45.0% |
| ! | TATGGAGGTGTGTGTAGCAT+TGG | - | chr5.2:35473676-35473695 | MS.gene40874:intron | 45.0% |
| !! | AGTGTCTCAGAAGGAGTATC+AGG | + | chr5.2:35472501-35472520 | None:intergenic | 45.0% |
| !! | CCGTTGACTCTTCCTTTGAT+CGG | - | chr5.2:35473186-35473205 | MS.gene40874:CDS | 45.0% |
| !! | GAGGTTTGAGAAGTACTTGG+AGG | - | chr5.2:35473460-35473479 | MS.gene40874:CDS | 45.0% |
| !! | GGAGAGGTTTGAGAAGTACT+TGG | - | chr5.2:35473457-35473476 | MS.gene40874:CDS | 45.0% |
| !! | TAACAGCGTTGACCGATCAA+AGG | + | chr5.2:35473201-35473220 | None:intergenic | 45.0% |
| !! | TTGTGAGGAACATGGATTGG+GGG | - | chr5.2:35473813-35473832 | MS.gene40874:intron | 45.0% |
| AAACTCGTCTGTAACCTCCG+TGG | - | chr5.2:35472570-35472589 | MS.gene40874:CDS | 50.0% | |
| ACACCTTCATATTCCTCCCG+AGG | + | chr5.2:35473251-35473270 | None:intergenic | 50.0% | |
| ACCGGCAAGTCCAACAAAGA+AGG | - | chr5.2:35472603-35472622 | MS.gene40874:CDS | 50.0% | |
| ACTTGGAGGATGTGAAGGCA+GGG | - | chr5.2:35473474-35473493 | MS.gene40874:intron | 50.0% | |
| AGAAACCGAAACCCACCGAT+GGG | - | chr5.2:35472402-35472421 | MS.gene40874:CDS | 50.0% | |
| AGAGGTGGCAACGAGAGTTA+AGG | - | chr5.2:35472956-35472975 | MS.gene40874:CDS | 50.0% | |
| AGGGAAGATCCTCTTGGCAA+TGG | + | chr5.2:35473231-35473250 | None:intergenic | 50.0% | |
| ATCGAGACAAGGGTTACCAG+TGG | + | chr5.2:35472460-35472479 | None:intergenic | 50.0% | |
| CACCTTCATATTCCTCCCGA+GGG | + | chr5.2:35473250-35473269 | None:intergenic | 50.0% | |
| CAGCTTCCATGGCTTCTACA+GGG | + | chr5.2:35474171-35474190 | None:intergenic | 50.0% | |
| CCCTCAATCACATGAAGCTG+AGG | + | chr5.2:35473767-35473786 | None:intergenic | 50.0% | |
| CTCCATCGTGACTAAAGAGG+TGG | - | chr5.2:35472941-35472960 | MS.gene40874:CDS | 50.0% | |
| GCCTCAGCTTCATGTGATTG+AGG | - | chr5.2:35473763-35473782 | MS.gene40874:intron | 50.0% | |
| GCCTTCTTTGTTGGACTTGC+CGG | + | chr5.2:35472607-35472626 | None:intergenic | 50.0% | |
| GGAAGAGAAGAGGATTGCCT+TGG | - | chr5.2:35473007-35473026 | MS.gene40874:CDS | 50.0% | |
| GGAGGTTACAGACGAGTTTG+AGG | + | chr5.2:35472569-35472588 | None:intergenic | 50.0% | |
| GGCTGTCAATGGGAATCTCA+AGG | - | chr5.2:35473880-35473899 | MS.gene40874:intron | 50.0% | |
| GGGAAGACTACTATTGCTGC+TGG | - | chr5.2:35473494-35473513 | MS.gene40874:intron | 50.0% | |
| GTTACAGACGAGTTTGAGGG+CGG | + | chr5.2:35472565-35472584 | None:intergenic | 50.0% | |
| TACTTGGAGGATGTGAAGGC+AGG | - | chr5.2:35473473-35473492 | MS.gene40874:intron | 50.0% | |
| TAGAAACCGAAACCCACCGA+TGG | - | chr5.2:35472401-35472420 | MS.gene40874:CDS | 50.0% | |
| TCACCAACGTTTCTCTCCAC+TGG | - | chr5.2:35472441-35472460 | MS.gene40874:CDS | 50.0% | |
| TCGAGAGGCTCAAACTAGCT+TGG | - | chr5.2:35472523-35472542 | MS.gene40874:CDS | 50.0% | |
| TCGGGAGGAATATGAAGGTG+TGG | - | chr5.2:35473250-35473269 | MS.gene40874:CDS | 50.0% | |
| TGCCACCTCTTTAGTCACGA+TGG | + | chr5.2:35472946-35472965 | None:intergenic | 50.0% | |
| TGCTACACACACCTCCATAG+GGG | + | chr5.2:35473675-35473694 | None:intergenic | 50.0% | |
| TTCCCTCGGGAGGAATATGA+AGG | - | chr5.2:35473245-35473264 | MS.gene40874:CDS | 50.0% | |
| TTGCCAAGAGGATCTTCCCT+CGG | - | chr5.2:35473231-35473250 | MS.gene40874:CDS | 50.0% | |
| TTTCAGTCAACCCCATCGGT+GGG | + | chr5.2:35472416-35472435 | None:intergenic | 50.0% | |
| ! | CTTGCTGTGTGTGATGTGTC+TGG | - | chr5.2:35473635-35473654 | MS.gene40874:intron | 50.0% |
| ! | GAGTCTTTGCGTGATGGAGA+TGG | - | chr5.2:35473542-35473561 | MS.gene40874:intron | 50.0% |
| ! | GATGTGTCTGGGAGTATGCA+TGG | - | chr5.2:35473647-35473666 | MS.gene40874:intron | 50.0% |
| ! | GGAATATGAAGGTGTGGAGG+AGG | - | chr5.2:35473256-35473275 | MS.gene40874:CDS | 50.0% |
| ! | GGAGGAATATGAAGGTGTGG+AGG | - | chr5.2:35473253-35473272 | MS.gene40874:CDS | 50.0% |
| ! | GTGTGTAGCATTGGGGTTGT+TGG | - | chr5.2:35473685-35473704 | MS.gene40874:intron | 50.0% |
| ! | TGGAGGTGTGTGTAGCATTG+GGG | - | chr5.2:35473678-35473697 | MS.gene40874:intron | 50.0% |
| ! | TTTTCAGTCAACCCCATCGG+TGG | + | chr5.2:35472417-35472436 | None:intergenic | 50.0% |
| !! | AAAGGAGTGGCACTGGTAAG+TGG | - | chr5.2:35474094-35474113 | MS.gene40874:CDS | 50.0% |
| !! | AAGATGTGTTGGTGCCGTTG+AGG | - | chr5.2:35473315-35473334 | MS.gene40874:CDS | 50.0% |
| CACTCAGAAAGGAGTGGCAC+TGG | - | chr5.2:35474087-35474106 | MS.gene40874:CDS | 55.0% | |
| CCTTTCTGAGTGGATGGCAC+CGG | + | chr5.2:35474079-35474098 | None:intergenic | 55.0% | |
| CGAGGAACCATGGAAAGGGA+AGG | - | chr5.2:35473721-35473740 | MS.gene40874:intron | 55.0% | |
| CTCTCGACGAGTGTCTCAGA+AGG | + | chr5.2:35472510-35472529 | None:intergenic | 55.0% | |
| CTTTCTGAGTGGATGGCACC+GGG | + | chr5.2:35474078-35474097 | None:intergenic | 55.0% | |
| GAAACCGAAACCCACCGATG+GGG | - | chr5.2:35472403-35472422 | MS.gene40874:CDS | 55.0% | |
| GAGTATGCATGGGACCCCTA+TGG | - | chr5.2:35473658-35473677 | MS.gene40874:intron | 55.0% | |
| GCAGCTTCCATGGCTTCTAC+AGG | + | chr5.2:35474172-35474191 | None:intergenic | 55.0% | |
| GCCACTCCTTTCTGAGTGGA+TGG | + | chr5.2:35474085-35474104 | None:intergenic | 55.0% | |
| GCCATCCACTCAGAAAGGAG+TGG | - | chr5.2:35474081-35474100 | MS.gene40874:CDS | 55.0% | |
| GCTTCTATGCTGCCGCTCTA+TGG | - | chr5.2:35472625-35472644 | MS.gene40874:CDS | 55.0% | |
| GTGAAGTGGCTGAGTTGCAG+TGG | - | chr5.2:35473564-35473583 | MS.gene40874:intron | 55.0% | |
| TATGCATGGGACCCCTATGG+AGG | - | chr5.2:35473661-35473680 | MS.gene40874:intron | 55.0% | |
| TGCCAAGAGGATCTTCCCTC+GGG | - | chr5.2:35473232-35473251 | MS.gene40874:CDS | 55.0% | |
| TGTAACCTCCGTGGTGTTCG+TGG | - | chr5.2:35472579-35472598 | MS.gene40874:CDS | 55.0% | |
| TTTCTGAGTGGATGGCACCG+GGG | + | chr5.2:35474077-35474096 | None:intergenic | 55.0% | |
| ! | CAGTGCCACTCCTTTCTGAG+TGG | + | chr5.2:35474089-35474108 | None:intergenic | 55.0% |
| ! | GCGTGATGGAGATGGTGAAG+TGG | - | chr5.2:35473550-35473569 | MS.gene40874:intron | 55.0% |
| ! | TCAACCCCATCGGTGGGTTT+CGG | + | chr5.2:35472410-35472429 | None:intergenic | 55.0% |
| !! | CTTCTGAGACACTCGTCGAG+AGG | - | chr5.2:35472508-35472527 | MS.gene40874:CDS | 55.0% |
| !! | GAAGGTGTTGGAGTTGCCTG+AGG | - | chr5.2:35473337-35473356 | MS.gene40874:CDS | 55.0% |
| !! | TGTGTTGGTGCCGTTGAGGA+AGG | - | chr5.2:35473319-35473338 | MS.gene40874:CDS | 55.0% |
| CAAGAGGATCTTCCCTCGGG+AGG | - | chr5.2:35473235-35473254 | MS.gene40874:CDS | 60.0% | |
| CTCCCGAGGGAAGATCCTCT+TGG | + | chr5.2:35473237-35473256 | None:intergenic | 60.0% | |
| CTCCGTGGTGTTCGTGGTAC+CGG | - | chr5.2:35472585-35472604 | MS.gene40874:CDS | 60.0% | |
| TGCCGGTACCACGAACACCA+CGG | + | chr5.2:35472590-35472609 | None:intergenic | 60.0% | |
| !! | CCGGTGCCATCCACTCAGAA+AGG | - | chr5.2:35474076-35474095 | MS.gene40874:CDS | 60.0% |
| !! | GGTGCCGTTGAGGAAGGTGT+TGG | - | chr5.2:35473325-35473344 | MS.gene40874:CDS | 60.0% |
| CGGTACCACGAACACCACGG+AGG | + | chr5.2:35472587-35472606 | None:intergenic | 65.0% | |
| CTGATACTCGGGGCCAGCGA+TGG | + | chr5.2:35474194-35474213 | None:intergenic | 65.0% | |
| GAGAGACTCGAAGGCCACCC+CGG | - | chr5.2:35474057-35474076 | MS.gene40874:CDS | 65.0% | |
| GCCAGCGATGGCAGCTTCCA+TGG | + | chr5.2:35474182-35474201 | None:intergenic | 65.0% | |
| GCCATGGAAGCTGCCATCGC+TGG | - | chr5.2:35474178-35474197 | MS.gene40874:CDS | 65.0% | |
| ! | CTGAGTGGATGGCACCGGGG+TGG | + | chr5.2:35474074-35474093 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 35472375 | 35474234 | 35472375 | ID=MS.gene40874 |
| chr5.2 | mRNA | 35472375 | 35474234 | 35472375 | ID=MS.gene40874.t1;Parent=MS.gene40874 |
| chr5.2 | exon | 35473926 | 35474234 | 35473926 | ID=MS.gene40874.t1.exon1;Parent=MS.gene40874.t1 |
| chr5.2 | CDS | 35473926 | 35474234 | 35473926 | ID=cds.MS.gene40874.t1;Parent=MS.gene40874.t1 |
| chr5.2 | exon | 35472375 | 35473490 | 35472375 | ID=MS.gene40874.t1.exon2;Parent=MS.gene40874.t1 |
| chr5.2 | CDS | 35472375 | 35473490 | 35472375 | ID=cds.MS.gene40874.t1;Parent=MS.gene40874.t1 |
| Gene Sequence |
| Protein sequence |
