Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55695.t1 | XP_013460499.1 | 97 | 199 | 6 | 0 | 1 | 199 | 15 | 213 | 2.30E-104 | 388.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55695.t1 | P72777 | 51.0 | 102 | 45 | 3 | 67 | 164 | 31 | 131 | 1.6e-16 | 87.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55695.t1 | I3SAY7 | 97.0 | 199 | 6 | 0 | 1 | 199 | 15 | 213 | 1.7e-104 | 388.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene55695 | 0.832196 | 1.08E-55 | -1.69E-46 |
MS.gene049297 | MS.gene55695 | 0.829327 | 5.48E-55 | -1.69E-46 |
MS.gene049346 | MS.gene55695 | 0.828154 | 1.05E-54 | -1.69E-46 |
MS.gene049351 | MS.gene55695 | 0.872158 | 3.94E-67 | -1.69E-46 |
MS.gene049389 | MS.gene55695 | 0.816473 | 5.43E-52 | -1.69E-46 |
MS.gene049491 | MS.gene55695 | 0.836339 | 9.92E-57 | -1.69E-46 |
MS.gene049599 | MS.gene55695 | -0.804881 | 1.75E-49 | -1.69E-46 |
MS.gene049661 | MS.gene55695 | 0.840125 | 1.05E-57 | -1.69E-46 |
MS.gene049662 | MS.gene55695 | 0.839672 | 1.38E-57 | -1.69E-46 |
MS.gene049758 | MS.gene55695 | 0.899987 | 1.15E-77 | -1.69E-46 |
MS.gene049760 | MS.gene55695 | 0.818628 | 1.77E-52 | -1.69E-46 |
MS.gene050076 | MS.gene55695 | 0.875007 | 4.32E-68 | -1.69E-46 |
MS.gene050099 | MS.gene55695 | 0.895747 | 7.14E-76 | -1.69E-46 |
MS.gene050128 | MS.gene55695 | 0.825324 | 4.99E-54 | -1.69E-46 |
MS.gene050301 | MS.gene55695 | 0.904287 | 1.44E-79 | -1.69E-46 |
MS.gene050319 | MS.gene55695 | -0.821639 | 3.63E-53 | -1.69E-46 |
MS.gene050330 | MS.gene55695 | -0.809726 | 1.64E-50 | -1.69E-46 |
MS.gene050397 | MS.gene55695 | 0.858862 | 6.16E-63 | -1.69E-46 |
MS.gene050404 | MS.gene55695 | 0.841617 | 4.26E-58 | -1.69E-46 |
MS.gene050406 | MS.gene55695 | 0.847543 | 1.08E-59 | -1.69E-46 |
MS.gene050432 | MS.gene55695 | 0.842716 | 2.18E-58 | -1.69E-46 |
MS.gene050464 | MS.gene55695 | 0.8461 | 2.68E-59 | -1.69E-46 |
MS.gene050529 | MS.gene55695 | 0.863877 | 1.82E-64 | -1.69E-46 |
MS.gene050558 | MS.gene55695 | 0.840766 | 7.13E-58 | -1.69E-46 |
MS.gene050767 | MS.gene55695 | 0.838817 | 2.30E-57 | -1.69E-46 |
MS.gene050770 | MS.gene55695 | 0.840303 | 9.43E-58 | -1.69E-46 |
MS.gene050783 | MS.gene55695 | 0.839117 | 1.92E-57 | -1.69E-46 |
MS.gene050812 | MS.gene55695 | 0.809596 | 1.75E-50 | -1.69E-46 |
MS.gene05101 | MS.gene55695 | 0.910412 | 1.93E-82 | -1.69E-46 |
MS.gene051171 | MS.gene55695 | 0.838886 | 2.20E-57 | -1.69E-46 |
MS.gene05119 | MS.gene55695 | -0.806931 | 6.47E-50 | -1.69E-46 |
MS.gene051240 | MS.gene55695 | 0.817366 | 3.42E-52 | -1.69E-46 |
MS.gene051242 | MS.gene55695 | 0.822263 | 2.60E-53 | -1.69E-46 |
MS.gene051471 | MS.gene55695 | 0.902047 | 1.44E-78 | -1.69E-46 |
MS.gene051582 | MS.gene55695 | 0.841987 | 3.40E-58 | -1.69E-46 |
MS.gene051662 | MS.gene55695 | 0.878981 | 1.81E-69 | -1.69E-46 |
MS.gene051663 | MS.gene55695 | 0.882185 | 1.29E-70 | -1.69E-46 |
MS.gene051860 | MS.gene55695 | 0.834322 | 3.21E-56 | -1.69E-46 |
MS.gene051877 | MS.gene55695 | 0.824212 | 9.12E-54 | -1.69E-46 |
MS.gene052078 | MS.gene55695 | 0.923331 | 3.06E-89 | -1.69E-46 |
MS.gene052178 | MS.gene55695 | 0.889197 | 3.00E-73 | -1.69E-46 |
MS.gene052188 | MS.gene55695 | 0.84466 | 6.59E-59 | -1.69E-46 |
MS.gene052207 | MS.gene55695 | 0.844329 | 8.09E-59 | -1.69E-46 |
MS.gene052253 | MS.gene55695 | 0.825388 | 4.82E-54 | -1.69E-46 |
MS.gene052287 | MS.gene55695 | 0.805756 | 1.14E-49 | -1.69E-46 |
MS.gene052290 | MS.gene55695 | 0.815323 | 9.81E-52 | -1.69E-46 |
MS.gene052310 | MS.gene55695 | 0.863202 | 2.95E-64 | -1.69E-46 |
MS.gene052322 | MS.gene55695 | 0.824674 | 7.10E-54 | -1.69E-46 |
MS.gene052326 | MS.gene55695 | 0.894828 | 1.71E-75 | -1.69E-46 |
MS.gene052340 | MS.gene55695 | 0.838154 | 3.40E-57 | -1.69E-46 |
MS.gene052344 | MS.gene55695 | -0.8187 | 1.71E-52 | -1.69E-46 |
MS.gene052485 | MS.gene55695 | 0.802123 | 6.51E-49 | -1.69E-46 |
MS.gene052600 | MS.gene55695 | 0.801475 | 8.85E-49 | -1.69E-46 |
MS.gene053209 | MS.gene55695 | 0.840472 | 8.52E-58 | -1.69E-46 |
MS.gene053322 | MS.gene55695 | 0.802805 | 4.71E-49 | -1.69E-46 |
MS.gene053557 | MS.gene55695 | 0.843825 | 1.10E-58 | -1.69E-46 |
MS.gene053836 | MS.gene55695 | 0.90962 | 4.66E-82 | -1.69E-46 |
MS.gene053907 | MS.gene55695 | 0.870191 | 1.76E-66 | -1.69E-46 |
MS.gene053928 | MS.gene55695 | 0.837305 | 5.62E-57 | -1.69E-46 |
MS.gene053971 | MS.gene55695 | 0.846657 | 1.89E-59 | -1.69E-46 |
MS.gene054011 | MS.gene55695 | 0.830932 | 2.22E-55 | -1.69E-46 |
MS.gene054012 | MS.gene55695 | 0.812991 | 3.21E-51 | -1.69E-46 |
MS.gene054013 | MS.gene55695 | 0.808372 | 3.20E-50 | -1.69E-46 |
MS.gene054123 | MS.gene55695 | 0.85529 | 6.96E-62 | -1.69E-46 |
MS.gene054214 | MS.gene55695 | 0.822523 | 2.26E-53 | -1.69E-46 |
MS.gene054376 | MS.gene55695 | 0.867129 | 1.72E-65 | -1.69E-46 |
MS.gene054473 | MS.gene55695 | 0.850478 | 1.65E-60 | -1.69E-46 |
MS.gene05455 | MS.gene55695 | 0.847545 | 1.08E-59 | -1.69E-46 |
MS.gene054618 | MS.gene55695 | 0.806438 | 8.23E-50 | -1.69E-46 |
MS.gene054802 | MS.gene55695 | 0.854428 | 1.24E-61 | -1.69E-46 |
MS.gene054803 | MS.gene55695 | 0.854183 | 1.46E-61 | -1.69E-46 |
MS.gene054804 | MS.gene55695 | 0.855998 | 4.33E-62 | -1.69E-46 |
MS.gene054930 | MS.gene55695 | 0.803206 | 3.89E-49 | -1.69E-46 |
MS.gene054942 | MS.gene55695 | 0.837366 | 5.42E-57 | -1.69E-46 |
MS.gene054983 | MS.gene55695 | 0.826678 | 2.38E-54 | -1.69E-46 |
MS.gene055116 | MS.gene55695 | 0.83376 | 4.43E-56 | -1.69E-46 |
MS.gene055254 | MS.gene55695 | 0.842466 | 2.54E-58 | -1.69E-46 |
MS.gene055277 | MS.gene55695 | 0.915662 | 4.51E-85 | -1.69E-46 |
MS.gene055303 | MS.gene55695 | 0.82908 | 6.29E-55 | -1.69E-46 |
MS.gene055390 | MS.gene55695 | 0.892472 | 1.54E-74 | -1.69E-46 |
MS.gene055422 | MS.gene55695 | 0.925994 | 8.61E-91 | -1.69E-46 |
MS.gene055428 | MS.gene55695 | 0.92489 | 3.84E-90 | -1.69E-46 |
MS.gene055499 | MS.gene55695 | 0.80394 | 2.74E-49 | -1.69E-46 |
MS.gene05553 | MS.gene55695 | 0.801005 | 1.10E-48 | -1.69E-46 |
MS.gene055604 | MS.gene55695 | 0.862761 | 4.03E-64 | -1.69E-46 |
MS.gene055712 | MS.gene55695 | 0.896566 | 3.26E-76 | -1.69E-46 |
MS.gene055896 | MS.gene55695 | 0.832473 | 9.27E-56 | -1.69E-46 |
MS.gene05602 | MS.gene55695 | 0.804224 | 2.39E-49 | -1.69E-46 |
MS.gene056069 | MS.gene55695 | -0.811377 | 7.22E-51 | -1.69E-46 |
MS.gene056191 | MS.gene55695 | 0.831654 | 1.48E-55 | -1.69E-46 |
MS.gene056407 | MS.gene55695 | 0.85862 | 7.27E-63 | -1.69E-46 |
MS.gene056410 | MS.gene55695 | 0.831657 | 1.47E-55 | -1.69E-46 |
MS.gene056451 | MS.gene55695 | 0.822826 | 1.92E-53 | -1.69E-46 |
MS.gene056497 | MS.gene55695 | 0.802931 | 4.44E-49 | -1.69E-46 |
MS.gene056609 | MS.gene55695 | 0.81521 | 1.04E-51 | -1.69E-46 |
MS.gene056612 | MS.gene55695 | 0.901932 | 1.62E-78 | -1.69E-46 |
MS.gene056772 | MS.gene55695 | 0.81309 | 3.05E-51 | -1.69E-46 |
MS.gene056796 | MS.gene55695 | 0.849561 | 2.99E-60 | -1.69E-46 |
MS.gene05702 | MS.gene55695 | 0.887642 | 1.19E-72 | -1.69E-46 |
MS.gene057121 | MS.gene55695 | 0.885055 | 1.13E-71 | -1.69E-46 |
MS.gene057123 | MS.gene55695 | 0.810237 | 1.27E-50 | -1.69E-46 |
MS.gene057245 | MS.gene55695 | 0.872355 | 3.39E-67 | -1.69E-46 |
MS.gene057260 | MS.gene55695 | 0.818515 | 1.88E-52 | -1.69E-46 |
MS.gene057295 | MS.gene55695 | 0.859378 | 4.31E-63 | -1.69E-46 |
MS.gene05733 | MS.gene55695 | 0.832389 | 9.72E-56 | -1.69E-46 |
MS.gene057439 | MS.gene55695 | 0.922222 | 1.30E-88 | -1.69E-46 |
MS.gene057448 | MS.gene55695 | 0.804942 | 1.70E-49 | -1.69E-46 |
MS.gene057450 | MS.gene55695 | 0.817242 | 3.65E-52 | -1.69E-46 |
MS.gene058002 | MS.gene55695 | 0.895216 | 1.18E-75 | -1.69E-46 |
MS.gene058082 | MS.gene55695 | 0.859189 | 4.91E-63 | -1.69E-46 |
MS.gene05811 | MS.gene55695 | 0.879514 | 1.17E-69 | -1.69E-46 |
MS.gene058142 | MS.gene55695 | 0.861674 | 8.69E-64 | -1.69E-46 |
MS.gene058201 | MS.gene55695 | 0.804452 | 2.15E-49 | -1.69E-46 |
MS.gene058233 | MS.gene55695 | 0.864879 | 8.85E-65 | -1.69E-46 |
MS.gene058276 | MS.gene55695 | 0.865698 | 4.89E-65 | -1.69E-46 |
MS.gene058293 | MS.gene55695 | 0.874492 | 6.47E-68 | -1.69E-46 |
MS.gene058365 | MS.gene55695 | 0.833766 | 4.42E-56 | -1.69E-46 |
MS.gene058660 | MS.gene55695 | 0.901492 | 2.54E-78 | -1.69E-46 |
MS.gene058749 | MS.gene55695 | 0.84625 | 2.44E-59 | -1.69E-46 |
MS.gene058787 | MS.gene55695 | 0.849731 | 2.68E-60 | -1.69E-46 |
MS.gene058845 | MS.gene55695 | 0.856455 | 3.18E-62 | -1.69E-46 |
MS.gene05886 | MS.gene55695 | 0.838515 | 2.75E-57 | -1.69E-46 |
MS.gene058993 | MS.gene55695 | 0.824493 | 7.84E-54 | -1.69E-46 |
MS.gene05907 | MS.gene55695 | 0.867179 | 1.66E-65 | -1.69E-46 |
MS.gene059228 | MS.gene55695 | 0.866964 | 1.94E-65 | -1.69E-46 |
MS.gene059294 | MS.gene55695 | 0.806954 | 6.40E-50 | -1.69E-46 |
MS.gene059326 | MS.gene55695 | 0.842042 | 3.29E-58 | -1.69E-46 |
MS.gene059342 | MS.gene55695 | 0.825369 | 4.87E-54 | -1.69E-46 |
MS.gene059518 | MS.gene55695 | 0.890578 | 8.68E-74 | -1.69E-46 |
MS.gene059597 | MS.gene55695 | 0.864276 | 1.37E-64 | -1.69E-46 |
MS.gene05959 | MS.gene55695 | 0.829734 | 4.36E-55 | -1.69E-46 |
MS.gene059676 | MS.gene55695 | 0.850828 | 1.32E-60 | -1.69E-46 |
MS.gene059688 | MS.gene55695 | 0.835272 | 1.85E-56 | -1.69E-46 |
MS.gene059692 | MS.gene55695 | 0.852124 | 5.67E-61 | -1.69E-46 |
MS.gene059695 | MS.gene55695 | 0.852638 | 4.05E-61 | -1.69E-46 |
MS.gene059708 | MS.gene55695 | 0.826228 | 3.04E-54 | -1.69E-46 |
MS.gene05984 | MS.gene55695 | 0.866568 | 2.59E-65 | -1.69E-46 |
MS.gene059894 | MS.gene55695 | 0.898004 | 8.11E-77 | -1.69E-46 |
MS.gene059899 | MS.gene55695 | 0.844751 | 6.23E-59 | -1.69E-46 |
MS.gene059960 | MS.gene55695 | 0.820473 | 6.73E-53 | -1.69E-46 |
MS.gene059974 | MS.gene55695 | 0.813434 | 2.56E-51 | -1.69E-46 |
MS.gene060005 | MS.gene55695 | 0.836753 | 7.78E-57 | -1.69E-46 |
MS.gene06037 | MS.gene55695 | 0.881937 | 1.58E-70 | -1.69E-46 |
MS.gene060407 | MS.gene55695 | 0.841433 | 4.77E-58 | -1.69E-46 |
MS.gene060476 | MS.gene55695 | 0.83918 | 1.85E-57 | -1.69E-46 |
MS.gene060559 | MS.gene55695 | 0.803352 | 3.63E-49 | -1.69E-46 |
MS.gene06090 | MS.gene55695 | 0.847259 | 1.30E-59 | -1.69E-46 |
MS.gene061049 | MS.gene55695 | 0.900253 | 8.82E-78 | -1.69E-46 |
MS.gene061051 | MS.gene55695 | -0.813218 | 2.86E-51 | -1.69E-46 |
MS.gene061112 | MS.gene55695 | 0.855052 | 8.17E-62 | -1.69E-46 |
MS.gene061265 | MS.gene55695 | 0.851862 | 6.73E-61 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55695.t1 | MTR_3g062920 | 96.985 | 199 | 6 | 0 | 1 | 199 | 15 | 213 | 1.24e-144 | 402 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55695.t1 | AT5G58250 | 71.519 | 158 | 39 | 1 | 42 | 199 | 57 | 208 | 5.77e-78 | 233 |
Find 47 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTATGTTTCTTGAAATTT+TGG | 0.123031 | 3.3:+56981359 | None:intergenic |
CACCATCCAGATTCATATTT+AGG | 0.173330 | 3.3:+56979323 | None:intergenic |
TGTCATTGAGCCTAAATTCT+TGG | 0.289570 | 3.3:-56980506 | MS.gene55695:CDS |
GACGTTCAAATAGCTGTTCT+TGG | 0.300818 | 3.3:+56980572 | None:intergenic |
AGCAGGCCTCCGCAGTTTCT+TGG | 0.307372 | 3.3:+56980465 | None:intergenic |
GGAAAACTATCCAAGAATTT+AGG | 0.316224 | 3.3:+56980496 | None:intergenic |
TTTGAACGTCGTCGCTACTA+TGG | 0.318750 | 3.3:-56980559 | MS.gene55695:CDS |
GAAGTAACAGCAGTGATAAA+AGG | 0.322521 | 3.3:+56981337 | None:intergenic |
GTTAGAAAGGATGTGCCTTT+TGG | 0.329162 | 3.3:+56981423 | None:intergenic |
TCACTCTTTACCAATGAGTT+TGG | 0.337284 | 3.3:-56981395 | MS.gene55695:CDS |
GTCCTTAGGATCTAAGTTCT+AGG | 0.357771 | 3.3:-56979098 | MS.gene55695:intron |
GTAATAAAGAACAGGATTAC+TGG | 0.370944 | 3.3:-56980531 | MS.gene55695:CDS |
CCCTATCCTAAATATGAATC+TGG | 0.374851 | 3.3:-56979329 | MS.gene55695:CDS |
ATCTATATTTCACTCATTTG+AGG | 0.401260 | 3.3:+56979062 | None:intergenic |
CGCAGTTTCTTGGTAAAGTC+AGG | 0.410742 | 3.3:+56980475 | None:intergenic |
TTCTCAAATTCCAGCTTAGT+AGG | 0.423773 | 3.3:+56979371 | None:intergenic |
AAATTCCAGCTTAGTAGGAT+TGG | 0.428131 | 3.3:+56979376 | None:intergenic |
TGGGAAACTTTCTTGCCCTC+TGG | 0.443007 | 3.3:-56979302 | MS.gene55695:CDS |
AATTTGAGAAGCCTGCAAAA+TGG | 0.444037 | 3.3:-56979358 | MS.gene55695:CDS |
AAGAGTGAGTTCTGTTAGAA+AGG | 0.452390 | 3.3:+56981410 | None:intergenic |
CCAGATTCATATTTAGGATA+GGG | 0.459432 | 3.3:+56979329 | None:intergenic |
CTTGCCCTCTGGACAGAAAG+AGG | 0.461986 | 3.3:-56979291 | MS.gene55695:intron |
TGCAACAATAAAATAATACT+TGG | 0.464259 | 3.3:+56980630 | None:intergenic |
CAGATTCATGAAATTAAGAC+TGG | 0.474576 | 3.3:-56979453 | MS.gene55695:CDS |
TGGAGAGCGTAATAAAGAAC+AGG | 0.479792 | 3.3:-56980539 | MS.gene55695:CDS |
TAGTGTCAACCAACGGTCCA+TGG | 0.496162 | 3.3:-56980435 | MS.gene55695:CDS |
GTAGGAGAGACCAAACTCAT+TGG | 0.500788 | 3.3:+56981385 | None:intergenic |
ATTTGAGAAGCCTGCAAAAT+GGG | 0.501452 | 3.3:-56979357 | MS.gene55695:CDS |
TTCCAGCTTAGTAGGATTGG+AGG | 0.503729 | 3.3:+56979379 | None:intergenic |
TCCAGATTCATATTTAGGAT+AGG | 0.511889 | 3.3:+56979328 | None:intergenic |
AGCCTCCAATCCTACTAAGC+TGG | 0.514208 | 3.3:-56979381 | MS.gene55695:CDS |
TAAATATGAATCTGGATGGT+GGG | 0.520478 | 3.3:-56979321 | MS.gene55695:CDS |
TTCTGATGCTCCTGCCACCA+AGG | 0.535440 | 3.3:-56981290 | MS.gene55695:intron |
TCATGTTCTTACGTGATCCA+TGG | 0.536324 | 3.3:+56980418 | None:intergenic |
CCACTCTTACCTCTTCCAAA+AGG | 0.546522 | 3.3:-56981438 | MS.gene55695:CDS |
TTACGTGATCCATGGACCGT+TGG | 0.559376 | 3.3:+56980426 | None:intergenic |
TTCACCTCTTTCTGTCCAGA+GGG | 0.560963 | 3.3:+56979287 | None:intergenic |
CTAAATATGAATCTGGATGG+TGG | 0.563124 | 3.3:-56979322 | MS.gene55695:CDS |
AAAATTTATGCTCGATGAGG+AGG | 0.586681 | 3.3:-56980602 | MS.gene55695:CDS |
GTTCACCTCTTTCTGTCCAG+AGG | 0.589301 | 3.3:+56979286 | None:intergenic |
TGCAAAATTTATGCTCGATG+AGG | 0.591381 | 3.3:-56980605 | MS.gene55695:CDS |
ATCCTAAATATGAATCTGGA+TGG | 0.610093 | 3.3:-56979325 | MS.gene55695:CDS |
GTTGACACTAGAGCAACAGC+AGG | 0.644010 | 3.3:+56980448 | None:intergenic |
TGAGAAGCCTGCAAAATGGG+TGG | 0.654553 | 3.3:-56979354 | MS.gene55695:CDS |
GTTGCTCTAGTGTCAACCAA+CGG | 0.671470 | 3.3:-56980442 | MS.gene55695:CDS |
CTGACTTTACCAAGAAACTG+CGG | 0.676341 | 3.3:-56980474 | MS.gene55695:CDS |
ACTTTACCAAGAAACTGCGG+AGG | 0.707976 | 3.3:-56980471 | MS.gene55695:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAAATTGTAAGAAAGA+AGG | - | chr3.3:56980942-56980961 | MS.gene55695:intron | 15.0% |
!! | ATAAAAATTGTAAGAAAGAA+GGG | - | chr3.3:56980943-56980962 | MS.gene55695:intron | 15.0% |
!! | TTTACATTAACAAAAATTGT+TGG | + | chr3.3:56981320-56981339 | None:intergenic | 15.0% |
!!! | AATTTTTGTTAATGTAAAAC+TGG | - | chr3.3:56981322-56981341 | MS.gene55695:CDS | 15.0% |
!!! | TTTATATTTGAAATGAGATT+TGG | - | chr3.3:56980271-56980290 | MS.gene55695:intron | 15.0% |
!! | AAAAAATAAAAACCCTAAAG+TGG | - | chr3.3:56979613-56979632 | MS.gene55695:intron | 20.0% |
!! | AAAACAGATAGTAATAATGT+GGG | + | chr3.3:56979279-56979298 | None:intergenic | 20.0% |
!! | AAATGAACGAAATTGTATAA+TGG | + | chr3.3:56979682-56979701 | None:intergenic | 20.0% |
!! | AAATTAACATAATGTGATCA+AGG | + | chr3.3:56979462-56979481 | None:intergenic | 20.0% |
!! | AATTAAAAAAAACGAACCAT+CGG | - | chr3.3:56980636-56980655 | MS.gene55695:CDS | 20.0% |
!! | CTCATTTCAAATATAAACTT+CGG | + | chr3.3:56980268-56980287 | None:intergenic | 20.0% |
!! | TGCAACAATAAAATAATACT+TGG | + | chr3.3:56979895-56979914 | None:intergenic | 20.0% |
!!! | GTTTATGTTTCTTGAAATTT+TGG | + | chr3.3:56979166-56979185 | None:intergenic | 20.0% |
!!! | TTTTGTTATTTGCCATATAT+TGG | - | chr3.3:56980352-56980371 | MS.gene55695:intron | 20.0% |
! | AGAAATAGATCTACAAATTC+CGG | + | chr3.3:56981297-56981316 | None:intergenic | 25.0% |
! | ATTTGCCATATATTGGATTT+GGG | - | chr3.3:56980359-56980378 | MS.gene55695:intron | 25.0% |
! | CAAAACAGATAGTAATAATG+TGG | + | chr3.3:56979280-56979299 | None:intergenic | 25.0% |
! | CGTTCATTTAAGTATCAAAT+TGG | - | chr3.3:56979693-56979712 | MS.gene55695:intron | 25.0% |
! | GCTGTCAACATATAATAAAA+TGG | - | chr3.3:56980994-56981013 | MS.gene55695:intron | 25.0% |
! | TAAAAGTAGAGATGCAAAAA+GGG | + | chr3.3:56980872-56980891 | None:intergenic | 25.0% |
! | TAGCTTATGATGTTAACTAT+AGG | + | chr3.3:56980539-56980558 | None:intergenic | 25.0% |
! | TATTTGCCATATATTGGATT+TGG | - | chr3.3:56980358-56980377 | MS.gene55695:intron | 25.0% |
! | TCATATTATACCACTTGAAA+GGG | + | chr3.3:56980923-56980942 | None:intergenic | 25.0% |
! | TTCATATTATACCACTTGAA+AGG | + | chr3.3:56980924-56980943 | None:intergenic | 25.0% |
!! | AATAACTTGGATTTTAAGCT+CGG | + | chr3.3:56980725-56980744 | None:intergenic | 25.0% |
!! | CATCTTTTCAATACTATTAG+TGG | + | chr3.3:56980401-56980420 | None:intergenic | 25.0% |
!! | GATCAAGGATTTTCAATTTT+AGG | + | chr3.3:56979447-56979466 | None:intergenic | 25.0% |
!!! | ATTTTTTTCCCATTCTGTTT+CGG | - | chr3.3:56981268-56981287 | MS.gene55695:intron | 25.0% |
!!! | GCTTTCAGTTTTGTAATTTT+TGG | - | chr3.3:56981369-56981388 | MS.gene55695:CDS | 25.0% |
!!! | GGTTCGTTTTTTTTAATTGT+GGG | + | chr3.3:56980634-56980653 | None:intergenic | 25.0% |
!!! | GTTCGTTTTTTTTAATTGTG+GGG | + | chr3.3:56980633-56980652 | None:intergenic | 25.0% |
!!! | TCAGTTTTGTAATTTTTGGA+AGG | - | chr3.3:56981373-56981392 | MS.gene55695:CDS | 25.0% |
!!! | TGGTTCGTTTTTTTTAATTG+TGG | + | chr3.3:56980635-56980654 | None:intergenic | 25.0% |
!!! | TTCTTGAAATTTTGGTTTGT+AGG | + | chr3.3:56979158-56979177 | None:intergenic | 25.0% |
!!! | TTGAGCTTGTTTTTGTTTTT+AGG | - | chr3.3:56980690-56980709 | MS.gene55695:intron | 25.0% |
AAAGTTGAATTGTTGTCCTT+AGG | - | chr3.3:56981410-56981429 | MS.gene55695:CDS | 30.0% | |
AAAGTTTATGACAGAAACTC+TGG | + | chr3.3:56980152-56980171 | None:intergenic | 30.0% | |
AGACATCTATGTTAGCTATT+AGG | + | chr3.3:56980564-56980583 | None:intergenic | 30.0% | |
ATCCTAAATATGAATCTGGA+TGG | - | chr3.3:56981197-56981216 | MS.gene55695:intron | 30.0% | |
ATGATCCTACAATATGAATG+AGG | - | chr3.3:56979341-56979360 | MS.gene55695:CDS | 30.0% | |
ATGATCTTAAGACAATGACT+GGG | - | chr3.3:56980314-56980333 | MS.gene55695:intron | 30.0% | |
CAATATGAATGAGGTTAGAA+TGG | - | chr3.3:56979350-56979369 | MS.gene55695:CDS | 30.0% | |
CAGATTCATGAAATTAAGAC+TGG | - | chr3.3:56981069-56981088 | MS.gene55695:intron | 30.0% | |
CTAAAAGTAGAGATGCAAAA+AGG | + | chr3.3:56980873-56980892 | None:intergenic | 30.0% | |
GGAAAACTATCCAAGAATTT+AGG | + | chr3.3:56980029-56980048 | None:intergenic | 30.0% | |
GTAAAGAGAAAAAGAAACCT+TGG | + | chr3.3:56979252-56979271 | None:intergenic | 30.0% | |
GTAATAAAGAACAGGATTAC+TGG | - | chr3.3:56979991-56980010 | MS.gene55695:intron | 30.0% | |
GTCAAACTTTACTTAACTTC+TGG | - | chr3.3:56979541-56979560 | MS.gene55695:intron | 30.0% | |
GTCATTGTCTTAAGATCATA+CGG | + | chr3.3:56980313-56980332 | None:intergenic | 30.0% | |
TAAATATGAATCTGGATGGT+GGG | - | chr3.3:56981201-56981220 | MS.gene55695:intron | 30.0% | |
TATGATCTTAAGACAATGAC+TGG | - | chr3.3:56980313-56980332 | MS.gene55695:intron | 30.0% | |
TCATGTAGTACTTATTGAGT+TGG | - | chr3.3:56979813-56979832 | MS.gene55695:intron | 30.0% | |
TCTAACCTCATTCATATTGT+AGG | + | chr3.3:56979349-56979368 | None:intergenic | 30.0% | |
TGAAAAGTGGACAATTCATT+TGG | - | chr3.3:56980171-56980190 | MS.gene55695:intron | 30.0% | |
! | AGAACTACTAGTTTGATTTC+AGG | - | chr3.3:56979716-56979735 | MS.gene55695:intron | 30.0% |
! | ATAACTTGGATTTTAAGCTC+GGG | + | chr3.3:56980724-56980743 | None:intergenic | 30.0% |
! | ATTCTGGCAAGAACTATTTT+TGG | - | chr3.3:56979519-56979538 | MS.gene55695:intron | 30.0% |
! | CCAGATTCATATTTAGGATA+GGG | + | chr3.3:56981196-56981215 | None:intergenic | 30.0% |
! | CTGTCATAAACTTTGAAAAG+TGG | - | chr3.3:56980158-56980177 | MS.gene55695:intron | 30.0% |
! | GTTTACACATGCAATTTTGA+AGG | + | chr3.3:56979419-56979438 | None:intergenic | 30.0% |
! | TCCAGATTCATATTTAGGAT+AGG | + | chr3.3:56981197-56981216 | None:intergenic | 30.0% |
! | TCTTGATGACTTATAAGCAT+TGG | - | chr3.3:56979788-56979807 | MS.gene55695:intron | 30.0% |
! | TGTTAATTTGATCCCTAAAG+TGG | - | chr3.3:56979473-56979492 | MS.gene55695:intron | 30.0% |
! | TTTGATTTCAGGAACTGAAT+TGG | - | chr3.3:56979727-56979746 | MS.gene55695:intron | 30.0% |
! | TTTTTCTTTTTACCCCTTAG+AGG | - | chr3.3:56980812-56980831 | MS.gene55695:intron | 30.0% |
!! | GTTTAATTTTCTCTTGTTGC+TGG | + | chr3.3:56980451-56980470 | None:intergenic | 30.0% |
!! | TACTATTAGTGGACTCTAAA+AGG | + | chr3.3:56980390-56980409 | None:intergenic | 30.0% |
!!! | ACTTATTGAGTTGGTTTTTG+TGG | - | chr3.3:56979822-56979841 | MS.gene55695:intron | 30.0% |
AAAATTTATGCTCGATGAGG+AGG | - | chr3.3:56979920-56979939 | MS.gene55695:intron | 35.0% | |
AAATTCCAGCTTAGTAGGAT+TGG | + | chr3.3:56981149-56981168 | None:intergenic | 35.0% | |
AAGAATCCTACTTCGAATTC+TGG | - | chr3.3:56979503-56979522 | MS.gene55695:intron | 35.0% | |
AAGAGAAAAAGAAACCTTGG+TGG | + | chr3.3:56979249-56979268 | None:intergenic | 35.0% | |
AAGAGTGAGTTCTGTTAGAA+AGG | + | chr3.3:56979115-56979134 | None:intergenic | 35.0% | |
AATCAGCATATCTCAATCGT+TGG | - | chr3.3:56980220-56980239 | MS.gene55695:intron | 35.0% | |
AATTTGAGAAGCCTGCAAAA+TGG | - | chr3.3:56981164-56981183 | MS.gene55695:intron | 35.0% | |
AGGAACCCAAATCCAATATA+TGG | + | chr3.3:56980367-56980386 | None:intergenic | 35.0% | |
ATCCATGCAGTCATGAAAAT+CGG | + | chr3.3:56980757-56980776 | None:intergenic | 35.0% | |
ATGTTAACTATAGGTGACTG+GGG | + | chr3.3:56980530-56980549 | None:intergenic | 35.0% | |
ATTTGAGAAGCCTGCAAAAT+GGG | - | chr3.3:56981165-56981184 | MS.gene55695:intron | 35.0% | |
CACCATCCAGATTCATATTT+AGG | + | chr3.3:56981202-56981221 | None:intergenic | 35.0% | |
CCCTATCCTAAATATGAATC+TGG | - | chr3.3:56981193-56981212 | MS.gene55695:intron | 35.0% | |
CTAAATATGAATCTGGATGG+TGG | - | chr3.3:56981200-56981219 | MS.gene55695:intron | 35.0% | |
GAAGTAACAGCAGTGATAAA+AGG | + | chr3.3:56979188-56979207 | None:intergenic | 35.0% | |
GATGTTAACTATAGGTGACT+GGG | + | chr3.3:56980531-56980550 | None:intergenic | 35.0% | |
TACCTAGAACTTAGATCCTA+AGG | + | chr3.3:56981429-56981448 | None:intergenic | 35.0% | |
TATATGCTTGCATCAAGAGT+TGG | - | chr3.3:56980588-56980607 | MS.gene55695:CDS | 35.0% | |
TATTATACCACTTGAAAGGG+TGG | + | chr3.3:56980920-56980939 | None:intergenic | 35.0% | |
TCACTCTTTACCAATGAGTT+TGG | - | chr3.3:56979127-56979146 | MS.gene55695:intron | 35.0% | |
TGATGTTAACTATAGGTGAC+TGG | + | chr3.3:56980532-56980551 | None:intergenic | 35.0% | |
TGCAAAATTTATGCTCGATG+AGG | - | chr3.3:56979917-56979936 | MS.gene55695:intron | 35.0% | |
TGTCATTGAGCCTAAATTCT+TGG | - | chr3.3:56980016-56980035 | MS.gene55695:intron | 35.0% | |
TTCTCAAATTCCAGCTTAGT+AGG | + | chr3.3:56981154-56981173 | None:intergenic | 35.0% | |
! | ATCAAGAGTTGGTCATTTGT+GGG | - | chr3.3:56980599-56980618 | MS.gene55695:CDS | 35.0% |
! | ATTCTTCTAGAGACCACTTT+AGG | + | chr3.3:56979489-56979508 | None:intergenic | 35.0% |
! | GAACTGAATTGGTGATTCAT+TGG | - | chr3.3:56979738-56979757 | MS.gene55695:intron | 35.0% |
! | TTCTTCTAGAGACCACTTTA+GGG | + | chr3.3:56979488-56979507 | None:intergenic | 35.0% |
! | TTTTAACCATCCTGTTCTCT+GGG | + | chr3.3:56979596-56979615 | None:intergenic | 35.0% |
! | TTTTTAACCATCCTGTTCTC+TGG | + | chr3.3:56979597-56979616 | None:intergenic | 35.0% |
!! | TATTAGTGGACTCTAAAAGG+AGG | + | chr3.3:56980387-56980406 | None:intergenic | 35.0% |
!! | TGCAATTTTGAAGGCAACTT+TGG | + | chr3.3:56979410-56979429 | None:intergenic | 35.0% |
AGTCAATGTCAGACCACTTT+AGG | + | chr3.3:56979629-56979648 | None:intergenic | 40.0% | |
AGTTGGTCATTTGTGGGATT+GGG | - | chr3.3:56980605-56980624 | MS.gene55695:CDS | 40.0% | |
CTGACTTTACCAAGAAACTG+CGG | - | chr3.3:56980048-56980067 | MS.gene55695:intron | 40.0% | |
GACGTTCAAATAGCTGTTCT+TGG | + | chr3.3:56979953-56979972 | None:intergenic | 40.0% | |
GTCAATGTCAGACCACTTTA+GGG | + | chr3.3:56979628-56979647 | None:intergenic | 40.0% | |
GTCCTTAGGATCTAAGTTCT+AGG | - | chr3.3:56981424-56981443 | MS.gene55695:CDS | 40.0% | |
TCATGTTCTTACGTGATCCA+TGG | + | chr3.3:56980107-56980126 | None:intergenic | 40.0% | |
TCCATGCAGTCATGAAAATC+GGG | + | chr3.3:56980756-56980775 | None:intergenic | 40.0% | |
TTAGCAACTGACACCTCTAA+GGG | + | chr3.3:56980828-56980847 | None:intergenic | 40.0% | |
TTCTTGCCAGAATTCGAAGT+AGG | + | chr3.3:56979512-56979531 | None:intergenic | 40.0% | |
TTTAACCATCCTGTTCTCTG+GGG | + | chr3.3:56979595-56979614 | None:intergenic | 40.0% | |
TTTAGCAACTGACACCTCTA+AGG | + | chr3.3:56980829-56980848 | None:intergenic | 40.0% | |
! | CATCAAGAGTTGGTCATTTG+TGG | - | chr3.3:56980598-56980617 | MS.gene55695:CDS | 40.0% |
! | GTTAGAAAGGATGTGCCTTT+TGG | + | chr3.3:56979102-56979121 | None:intergenic | 40.0% |
! | TCGGGATCGATTCAATAACT+TGG | + | chr3.3:56980738-56980757 | None:intergenic | 40.0% |
! | TGGAGAGCGTAATAAAGAAC+AGG | - | chr3.3:56979983-56980002 | MS.gene55695:intron | 40.0% |
!! | AGACTGGATCGAGTTTTATC+AGG | - | chr3.3:56981085-56981104 | MS.gene55695:intron | 40.0% |
AAGGGTGGATCTCTATCTGA+TGG | + | chr3.3:56980905-56980924 | None:intergenic | 45.0% | |
AATCTGCCAAAACACGCACA+GGG | + | chr3.3:56981055-56981074 | None:intergenic | 45.0% | |
ACGAACCATCGGATCTTGAT+CGG | - | chr3.3:56980647-56980666 | MS.gene55695:intron | 45.0% | |
ACTTTACCAAGAAACTGCGG+AGG | - | chr3.3:56980051-56980070 | MS.gene55695:intron | 45.0% | |
CCACTCTTACCTCTTCCAAA+AGG | - | chr3.3:56979084-56979103 | MS.gene55695:CDS | 45.0% | |
CGCAGTTTCTTGGTAAAGTC+AGG | + | chr3.3:56980050-56980069 | None:intergenic | 45.0% | |
GGCCGAACTCTAGATTACTA+GGG | - | chr3.3:56979562-56979581 | MS.gene55695:intron | 45.0% | |
GTAGGAGAGACCAAACTCAT+TGG | + | chr3.3:56979140-56979159 | None:intergenic | 45.0% | |
GTTGCTCTAGTGTCAACCAA+CGG | - | chr3.3:56980080-56980099 | MS.gene55695:intron | 45.0% | |
TAGAGATCCACCCTTTCAAG+TGG | - | chr3.3:56980910-56980929 | MS.gene55695:intron | 45.0% | |
TAGCAACTGACACCTCTAAG+GGG | + | chr3.3:56980827-56980846 | None:intergenic | 45.0% | |
TCCCATTCTGTTTCGGTAAC+CGG | - | chr3.3:56981275-56981294 | MS.gene55695:intron | 45.0% | |
TCCGGTTACCGAAACAGAAT+GGG | + | chr3.3:56981279-56981298 | None:intergenic | 45.0% | |
TGGCCGAACTCTAGATTACT+AGG | - | chr3.3:56979561-56979580 | MS.gene55695:intron | 45.0% | |
TTCACCTCTTTCTGTCCAGA+GGG | + | chr3.3:56981238-56981257 | None:intergenic | 45.0% | |
TTCCAGCTTAGTAGGATTGG+AGG | + | chr3.3:56981146-56981165 | None:intergenic | 45.0% | |
TTCCGGTTACCGAAACAGAA+TGG | + | chr3.3:56981280-56981299 | None:intergenic | 45.0% | |
TTCTCTTGTTGCTGGTAGCA+AGG | + | chr3.3:56980443-56980462 | None:intergenic | 45.0% | |
TTTGAACGTCGTCGCTACTA+TGG | - | chr3.3:56979963-56979982 | MS.gene55695:intron | 45.0% | |
! | ATCCTGTTCTCTGGGGAAAT+GGG | + | chr3.3:56979588-56979607 | None:intergenic | 45.0% |
! | GAAAAAGAAACCTTGGTGGC+AGG | + | chr3.3:56979245-56979264 | None:intergenic | 45.0% |
! | GAGTTGGTCATTTGTGGGAT+TGG | - | chr3.3:56980604-56980623 | MS.gene55695:CDS | 45.0% |
! | GGCCCTAGTAATCTAGAGTT+CGG | + | chr3.3:56979567-56979586 | None:intergenic | 45.0% |
! | TCCCGATTTTCATGACTGCA+TGG | - | chr3.3:56980752-56980771 | MS.gene55695:intron | 45.0% |
!! | AAGGATGTGCCTTTTGGAAG+AGG | + | chr3.3:56979096-56979115 | None:intergenic | 45.0% |
!! | CCTTTTGGAAGAGGTAAGAG+TGG | + | chr3.3:56979087-56979106 | None:intergenic | 45.0% |
!!! | ATTAAACTTTTTAAAAATAT+TGG | - | chr3.3:56980464-56980483 | MS.gene55695:CDS | 5.0% |
ACCATCGGATCTTGATCGGA+TGG | - | chr3.3:56980651-56980670 | MS.gene55695:intron | 50.0% | |
ACTCTAGATTGCCTGCAGTC+AGG | + | chr3.3:56980781-56980800 | None:intergenic | 50.0% | |
AGCCTCCAATCCTACTAAGC+TGG | - | chr3.3:56981141-56981160 | MS.gene55695:intron | 50.0% | |
ATCTGCCAAAACACGCACAG+GGG | + | chr3.3:56981054-56981073 | None:intergenic | 50.0% | |
CATTTCCCCAGAGAACAGGA+TGG | - | chr3.3:56979587-56979606 | MS.gene55695:intron | 50.0% | |
GAATCTGCCAAAACACGCAC+AGG | + | chr3.3:56981056-56981075 | None:intergenic | 50.0% | |
GTTCACCTCTTTCTGTCCAG+AGG | + | chr3.3:56981239-56981258 | None:intergenic | 50.0% | |
GTTGACACTAGAGCAACAGC+AGG | + | chr3.3:56980077-56980096 | None:intergenic | 50.0% | |
TAGTGTCAACCAACGGTCCA+TGG | - | chr3.3:56980087-56980106 | MS.gene55695:intron | 50.0% | |
TGAGAAGCCTGCAAAATGGG+TGG | - | chr3.3:56981168-56981187 | MS.gene55695:intron | 50.0% | |
TGGGAAACTTTCTTGCCCTC+TGG | - | chr3.3:56981220-56981239 | MS.gene55695:intron | 50.0% | |
TTACGTGATCCATGGACCGT+TGG | + | chr3.3:56980099-56980118 | None:intergenic | 50.0% | |
! | CATCCTGTTCTCTGGGGAAA+TGG | + | chr3.3:56979589-56979608 | None:intergenic | 50.0% |
CTGCATGGATTCCTGACTGC+AGG | - | chr3.3:56980767-56980786 | MS.gene55695:intron | 55.0% | |
CTTGCCCTCTGGACAGAAAG+AGG | - | chr3.3:56981231-56981250 | MS.gene55695:intron | 55.0% | |
GCCATCCGATCAAGATCCGA+TGG | + | chr3.3:56980655-56980674 | None:intergenic | 55.0% | |
TTCTGATGCTCCTGCCACCA+AGG | - | chr3.3:56979232-56979251 | MS.gene55695:intron | 55.0% | |
!! | TAGGGTGCCACCCATTTTGC+AGG | + | chr3.3:56981178-56981197 | None:intergenic | 55.0% |
AGCAGGCCTCCGCAGTTTCT+TGG | + | chr3.3:56980060-56980079 | None:intergenic | 60.0% | |
GGCCCATTTCCCCAGAGAAC+AGG | - | chr3.3:56979583-56979602 | MS.gene55695:intron | 60.0% | |
! | CTCTGCCCCTGTGCGTGTTT+TGG | - | chr3.3:56981046-56981065 | MS.gene55695:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 56979071 | 56981473 | 56979071 | ID=MS.gene55695 |
chr3.3 | mRNA | 56979071 | 56981473 | 56979071 | ID=MS.gene55695.t1;Parent=MS.gene55695 |
chr3.3 | exon | 56981291 | 56981473 | 56981291 | ID=MS.gene55695.t1.exon1;Parent=MS.gene55695.t1 |
chr3.3 | CDS | 56981291 | 56981473 | 56981291 | ID=cds.MS.gene55695.t1;Parent=MS.gene55695.t1 |
chr3.3 | exon | 56980430 | 56980662 | 56980430 | ID=MS.gene55695.t1.exon2;Parent=MS.gene55695.t1 |
chr3.3 | CDS | 56980430 | 56980662 | 56980430 | ID=cds.MS.gene55695.t1;Parent=MS.gene55695.t1 |
chr3.3 | exon | 56979292 | 56979472 | 56979292 | ID=MS.gene55695.t1.exon3;Parent=MS.gene55695.t1 |
chr3.3 | CDS | 56979292 | 56979472 | 56979292 | ID=cds.MS.gene55695.t1;Parent=MS.gene55695.t1 |
chr3.3 | exon | 56979071 | 56979112 | 56979071 | ID=MS.gene55695.t1.exon4;Parent=MS.gene55695.t1 |
chr3.3 | CDS | 56979071 | 56979112 | 56979071 | ID=cds.MS.gene55695.t1;Parent=MS.gene55695.t1 |
Gene Sequence |
Protein sequence |