AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55695


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55695.t1 MTR_3g062920 96.985 199 6 0 1 199 15 213 1.24e-144 402
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55695.t1 AT5G58250 71.519 158 39 1 42 199 57 208 5.77e-78 233

Find 47 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATGTTTCTTGAAATTT+TGG 0.123031 3.3:+56981359 None:intergenic
CACCATCCAGATTCATATTT+AGG 0.173330 3.3:+56979323 None:intergenic
TGTCATTGAGCCTAAATTCT+TGG 0.289570 3.3:-56980506 MS.gene55695:CDS
GACGTTCAAATAGCTGTTCT+TGG 0.300818 3.3:+56980572 None:intergenic
AGCAGGCCTCCGCAGTTTCT+TGG 0.307372 3.3:+56980465 None:intergenic
GGAAAACTATCCAAGAATTT+AGG 0.316224 3.3:+56980496 None:intergenic
TTTGAACGTCGTCGCTACTA+TGG 0.318750 3.3:-56980559 MS.gene55695:CDS
GAAGTAACAGCAGTGATAAA+AGG 0.322521 3.3:+56981337 None:intergenic
GTTAGAAAGGATGTGCCTTT+TGG 0.329162 3.3:+56981423 None:intergenic
TCACTCTTTACCAATGAGTT+TGG 0.337284 3.3:-56981395 MS.gene55695:CDS
GTCCTTAGGATCTAAGTTCT+AGG 0.357771 3.3:-56979098 MS.gene55695:intron
GTAATAAAGAACAGGATTAC+TGG 0.370944 3.3:-56980531 MS.gene55695:CDS
CCCTATCCTAAATATGAATC+TGG 0.374851 3.3:-56979329 MS.gene55695:CDS
ATCTATATTTCACTCATTTG+AGG 0.401260 3.3:+56979062 None:intergenic
CGCAGTTTCTTGGTAAAGTC+AGG 0.410742 3.3:+56980475 None:intergenic
TTCTCAAATTCCAGCTTAGT+AGG 0.423773 3.3:+56979371 None:intergenic
AAATTCCAGCTTAGTAGGAT+TGG 0.428131 3.3:+56979376 None:intergenic
TGGGAAACTTTCTTGCCCTC+TGG 0.443007 3.3:-56979302 MS.gene55695:CDS
AATTTGAGAAGCCTGCAAAA+TGG 0.444037 3.3:-56979358 MS.gene55695:CDS
AAGAGTGAGTTCTGTTAGAA+AGG 0.452390 3.3:+56981410 None:intergenic
CCAGATTCATATTTAGGATA+GGG 0.459432 3.3:+56979329 None:intergenic
CTTGCCCTCTGGACAGAAAG+AGG 0.461986 3.3:-56979291 MS.gene55695:intron
TGCAACAATAAAATAATACT+TGG 0.464259 3.3:+56980630 None:intergenic
CAGATTCATGAAATTAAGAC+TGG 0.474576 3.3:-56979453 MS.gene55695:CDS
TGGAGAGCGTAATAAAGAAC+AGG 0.479792 3.3:-56980539 MS.gene55695:CDS
TAGTGTCAACCAACGGTCCA+TGG 0.496162 3.3:-56980435 MS.gene55695:CDS
GTAGGAGAGACCAAACTCAT+TGG 0.500788 3.3:+56981385 None:intergenic
ATTTGAGAAGCCTGCAAAAT+GGG 0.501452 3.3:-56979357 MS.gene55695:CDS
TTCCAGCTTAGTAGGATTGG+AGG 0.503729 3.3:+56979379 None:intergenic
TCCAGATTCATATTTAGGAT+AGG 0.511889 3.3:+56979328 None:intergenic
AGCCTCCAATCCTACTAAGC+TGG 0.514208 3.3:-56979381 MS.gene55695:CDS
TAAATATGAATCTGGATGGT+GGG 0.520478 3.3:-56979321 MS.gene55695:CDS
TTCTGATGCTCCTGCCACCA+AGG 0.535440 3.3:-56981290 MS.gene55695:intron
TCATGTTCTTACGTGATCCA+TGG 0.536324 3.3:+56980418 None:intergenic
CCACTCTTACCTCTTCCAAA+AGG 0.546522 3.3:-56981438 MS.gene55695:CDS
TTACGTGATCCATGGACCGT+TGG 0.559376 3.3:+56980426 None:intergenic
TTCACCTCTTTCTGTCCAGA+GGG 0.560963 3.3:+56979287 None:intergenic
CTAAATATGAATCTGGATGG+TGG 0.563124 3.3:-56979322 MS.gene55695:CDS
AAAATTTATGCTCGATGAGG+AGG 0.586681 3.3:-56980602 MS.gene55695:CDS
GTTCACCTCTTTCTGTCCAG+AGG 0.589301 3.3:+56979286 None:intergenic
TGCAAAATTTATGCTCGATG+AGG 0.591381 3.3:-56980605 MS.gene55695:CDS
ATCCTAAATATGAATCTGGA+TGG 0.610093 3.3:-56979325 MS.gene55695:CDS
GTTGACACTAGAGCAACAGC+AGG 0.644010 3.3:+56980448 None:intergenic
TGAGAAGCCTGCAAAATGGG+TGG 0.654553 3.3:-56979354 MS.gene55695:CDS
GTTGCTCTAGTGTCAACCAA+CGG 0.671470 3.3:-56980442 MS.gene55695:CDS
CTGACTTTACCAAGAAACTG+CGG 0.676341 3.3:-56980474 MS.gene55695:CDS
ACTTTACCAAGAAACTGCGG+AGG 0.707976 3.3:-56980471 MS.gene55695:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATTGTAAGAAAGA+AGG - chr3.3:56980942-56980961 MS.gene55695:intron 15.0%
!! ATAAAAATTGTAAGAAAGAA+GGG - chr3.3:56980943-56980962 MS.gene55695:intron 15.0%
!! TTTACATTAACAAAAATTGT+TGG + chr3.3:56981320-56981339 None:intergenic 15.0%
!!! AATTTTTGTTAATGTAAAAC+TGG - chr3.3:56981322-56981341 MS.gene55695:CDS 15.0%
!!! TTTATATTTGAAATGAGATT+TGG - chr3.3:56980271-56980290 MS.gene55695:intron 15.0%
!! AAAAAATAAAAACCCTAAAG+TGG - chr3.3:56979613-56979632 MS.gene55695:intron 20.0%
!! AAAACAGATAGTAATAATGT+GGG + chr3.3:56979279-56979298 None:intergenic 20.0%
!! AAATGAACGAAATTGTATAA+TGG + chr3.3:56979682-56979701 None:intergenic 20.0%
!! AAATTAACATAATGTGATCA+AGG + chr3.3:56979462-56979481 None:intergenic 20.0%
!! AATTAAAAAAAACGAACCAT+CGG - chr3.3:56980636-56980655 MS.gene55695:CDS 20.0%
!! CTCATTTCAAATATAAACTT+CGG + chr3.3:56980268-56980287 None:intergenic 20.0%
!! TGCAACAATAAAATAATACT+TGG + chr3.3:56979895-56979914 None:intergenic 20.0%
!!! GTTTATGTTTCTTGAAATTT+TGG + chr3.3:56979166-56979185 None:intergenic 20.0%
!!! TTTTGTTATTTGCCATATAT+TGG - chr3.3:56980352-56980371 MS.gene55695:intron 20.0%
! AGAAATAGATCTACAAATTC+CGG + chr3.3:56981297-56981316 None:intergenic 25.0%
! ATTTGCCATATATTGGATTT+GGG - chr3.3:56980359-56980378 MS.gene55695:intron 25.0%
! CAAAACAGATAGTAATAATG+TGG + chr3.3:56979280-56979299 None:intergenic 25.0%
! CGTTCATTTAAGTATCAAAT+TGG - chr3.3:56979693-56979712 MS.gene55695:intron 25.0%
! GCTGTCAACATATAATAAAA+TGG - chr3.3:56980994-56981013 MS.gene55695:intron 25.0%
! TAAAAGTAGAGATGCAAAAA+GGG + chr3.3:56980872-56980891 None:intergenic 25.0%
! TAGCTTATGATGTTAACTAT+AGG + chr3.3:56980539-56980558 None:intergenic 25.0%
! TATTTGCCATATATTGGATT+TGG - chr3.3:56980358-56980377 MS.gene55695:intron 25.0%
! TCATATTATACCACTTGAAA+GGG + chr3.3:56980923-56980942 None:intergenic 25.0%
! TTCATATTATACCACTTGAA+AGG + chr3.3:56980924-56980943 None:intergenic 25.0%
!! AATAACTTGGATTTTAAGCT+CGG + chr3.3:56980725-56980744 None:intergenic 25.0%
!! CATCTTTTCAATACTATTAG+TGG + chr3.3:56980401-56980420 None:intergenic 25.0%
!! GATCAAGGATTTTCAATTTT+AGG + chr3.3:56979447-56979466 None:intergenic 25.0%
!!! ATTTTTTTCCCATTCTGTTT+CGG - chr3.3:56981268-56981287 MS.gene55695:intron 25.0%
!!! GCTTTCAGTTTTGTAATTTT+TGG - chr3.3:56981369-56981388 MS.gene55695:CDS 25.0%
!!! GGTTCGTTTTTTTTAATTGT+GGG + chr3.3:56980634-56980653 None:intergenic 25.0%
!!! GTTCGTTTTTTTTAATTGTG+GGG + chr3.3:56980633-56980652 None:intergenic 25.0%
!!! TCAGTTTTGTAATTTTTGGA+AGG - chr3.3:56981373-56981392 MS.gene55695:CDS 25.0%
!!! TGGTTCGTTTTTTTTAATTG+TGG + chr3.3:56980635-56980654 None:intergenic 25.0%
!!! TTCTTGAAATTTTGGTTTGT+AGG + chr3.3:56979158-56979177 None:intergenic 25.0%
!!! TTGAGCTTGTTTTTGTTTTT+AGG - chr3.3:56980690-56980709 MS.gene55695:intron 25.0%
AAAGTTGAATTGTTGTCCTT+AGG - chr3.3:56981410-56981429 MS.gene55695:CDS 30.0%
AAAGTTTATGACAGAAACTC+TGG + chr3.3:56980152-56980171 None:intergenic 30.0%
AGACATCTATGTTAGCTATT+AGG + chr3.3:56980564-56980583 None:intergenic 30.0%
ATCCTAAATATGAATCTGGA+TGG - chr3.3:56981197-56981216 MS.gene55695:intron 30.0%
ATGATCCTACAATATGAATG+AGG - chr3.3:56979341-56979360 MS.gene55695:CDS 30.0%
ATGATCTTAAGACAATGACT+GGG - chr3.3:56980314-56980333 MS.gene55695:intron 30.0%
CAATATGAATGAGGTTAGAA+TGG - chr3.3:56979350-56979369 MS.gene55695:CDS 30.0%
CAGATTCATGAAATTAAGAC+TGG - chr3.3:56981069-56981088 MS.gene55695:intron 30.0%
CTAAAAGTAGAGATGCAAAA+AGG + chr3.3:56980873-56980892 None:intergenic 30.0%
GGAAAACTATCCAAGAATTT+AGG + chr3.3:56980029-56980048 None:intergenic 30.0%
GTAAAGAGAAAAAGAAACCT+TGG + chr3.3:56979252-56979271 None:intergenic 30.0%
GTAATAAAGAACAGGATTAC+TGG - chr3.3:56979991-56980010 MS.gene55695:intron 30.0%
GTCAAACTTTACTTAACTTC+TGG - chr3.3:56979541-56979560 MS.gene55695:intron 30.0%
GTCATTGTCTTAAGATCATA+CGG + chr3.3:56980313-56980332 None:intergenic 30.0%
TAAATATGAATCTGGATGGT+GGG - chr3.3:56981201-56981220 MS.gene55695:intron 30.0%
TATGATCTTAAGACAATGAC+TGG - chr3.3:56980313-56980332 MS.gene55695:intron 30.0%
TCATGTAGTACTTATTGAGT+TGG - chr3.3:56979813-56979832 MS.gene55695:intron 30.0%
TCTAACCTCATTCATATTGT+AGG + chr3.3:56979349-56979368 None:intergenic 30.0%
TGAAAAGTGGACAATTCATT+TGG - chr3.3:56980171-56980190 MS.gene55695:intron 30.0%
! AGAACTACTAGTTTGATTTC+AGG - chr3.3:56979716-56979735 MS.gene55695:intron 30.0%
! ATAACTTGGATTTTAAGCTC+GGG + chr3.3:56980724-56980743 None:intergenic 30.0%
! ATTCTGGCAAGAACTATTTT+TGG - chr3.3:56979519-56979538 MS.gene55695:intron 30.0%
! CCAGATTCATATTTAGGATA+GGG + chr3.3:56981196-56981215 None:intergenic 30.0%
! CTGTCATAAACTTTGAAAAG+TGG - chr3.3:56980158-56980177 MS.gene55695:intron 30.0%
! GTTTACACATGCAATTTTGA+AGG + chr3.3:56979419-56979438 None:intergenic 30.0%
! TCCAGATTCATATTTAGGAT+AGG + chr3.3:56981197-56981216 None:intergenic 30.0%
! TCTTGATGACTTATAAGCAT+TGG - chr3.3:56979788-56979807 MS.gene55695:intron 30.0%
! TGTTAATTTGATCCCTAAAG+TGG - chr3.3:56979473-56979492 MS.gene55695:intron 30.0%
! TTTGATTTCAGGAACTGAAT+TGG - chr3.3:56979727-56979746 MS.gene55695:intron 30.0%
! TTTTTCTTTTTACCCCTTAG+AGG - chr3.3:56980812-56980831 MS.gene55695:intron 30.0%
!! GTTTAATTTTCTCTTGTTGC+TGG + chr3.3:56980451-56980470 None:intergenic 30.0%
!! TACTATTAGTGGACTCTAAA+AGG + chr3.3:56980390-56980409 None:intergenic 30.0%
!!! ACTTATTGAGTTGGTTTTTG+TGG - chr3.3:56979822-56979841 MS.gene55695:intron 30.0%
AAAATTTATGCTCGATGAGG+AGG - chr3.3:56979920-56979939 MS.gene55695:intron 35.0%
AAATTCCAGCTTAGTAGGAT+TGG + chr3.3:56981149-56981168 None:intergenic 35.0%
AAGAATCCTACTTCGAATTC+TGG - chr3.3:56979503-56979522 MS.gene55695:intron 35.0%
AAGAGAAAAAGAAACCTTGG+TGG + chr3.3:56979249-56979268 None:intergenic 35.0%
AAGAGTGAGTTCTGTTAGAA+AGG + chr3.3:56979115-56979134 None:intergenic 35.0%
AATCAGCATATCTCAATCGT+TGG - chr3.3:56980220-56980239 MS.gene55695:intron 35.0%
AATTTGAGAAGCCTGCAAAA+TGG - chr3.3:56981164-56981183 MS.gene55695:intron 35.0%
AGGAACCCAAATCCAATATA+TGG + chr3.3:56980367-56980386 None:intergenic 35.0%
ATCCATGCAGTCATGAAAAT+CGG + chr3.3:56980757-56980776 None:intergenic 35.0%
ATGTTAACTATAGGTGACTG+GGG + chr3.3:56980530-56980549 None:intergenic 35.0%
ATTTGAGAAGCCTGCAAAAT+GGG - chr3.3:56981165-56981184 MS.gene55695:intron 35.0%
CACCATCCAGATTCATATTT+AGG + chr3.3:56981202-56981221 None:intergenic 35.0%
CCCTATCCTAAATATGAATC+TGG - chr3.3:56981193-56981212 MS.gene55695:intron 35.0%
CTAAATATGAATCTGGATGG+TGG - chr3.3:56981200-56981219 MS.gene55695:intron 35.0%
GAAGTAACAGCAGTGATAAA+AGG + chr3.3:56979188-56979207 None:intergenic 35.0%
GATGTTAACTATAGGTGACT+GGG + chr3.3:56980531-56980550 None:intergenic 35.0%
TACCTAGAACTTAGATCCTA+AGG + chr3.3:56981429-56981448 None:intergenic 35.0%
TATATGCTTGCATCAAGAGT+TGG - chr3.3:56980588-56980607 MS.gene55695:CDS 35.0%
TATTATACCACTTGAAAGGG+TGG + chr3.3:56980920-56980939 None:intergenic 35.0%
TCACTCTTTACCAATGAGTT+TGG - chr3.3:56979127-56979146 MS.gene55695:intron 35.0%
TGATGTTAACTATAGGTGAC+TGG + chr3.3:56980532-56980551 None:intergenic 35.0%
TGCAAAATTTATGCTCGATG+AGG - chr3.3:56979917-56979936 MS.gene55695:intron 35.0%
TGTCATTGAGCCTAAATTCT+TGG - chr3.3:56980016-56980035 MS.gene55695:intron 35.0%
TTCTCAAATTCCAGCTTAGT+AGG + chr3.3:56981154-56981173 None:intergenic 35.0%
! ATCAAGAGTTGGTCATTTGT+GGG - chr3.3:56980599-56980618 MS.gene55695:CDS 35.0%
! ATTCTTCTAGAGACCACTTT+AGG + chr3.3:56979489-56979508 None:intergenic 35.0%
! GAACTGAATTGGTGATTCAT+TGG - chr3.3:56979738-56979757 MS.gene55695:intron 35.0%
! TTCTTCTAGAGACCACTTTA+GGG + chr3.3:56979488-56979507 None:intergenic 35.0%
! TTTTAACCATCCTGTTCTCT+GGG + chr3.3:56979596-56979615 None:intergenic 35.0%
! TTTTTAACCATCCTGTTCTC+TGG + chr3.3:56979597-56979616 None:intergenic 35.0%
!! TATTAGTGGACTCTAAAAGG+AGG + chr3.3:56980387-56980406 None:intergenic 35.0%
!! TGCAATTTTGAAGGCAACTT+TGG + chr3.3:56979410-56979429 None:intergenic 35.0%
AGTCAATGTCAGACCACTTT+AGG + chr3.3:56979629-56979648 None:intergenic 40.0%
AGTTGGTCATTTGTGGGATT+GGG - chr3.3:56980605-56980624 MS.gene55695:CDS 40.0%
CTGACTTTACCAAGAAACTG+CGG - chr3.3:56980048-56980067 MS.gene55695:intron 40.0%
GACGTTCAAATAGCTGTTCT+TGG + chr3.3:56979953-56979972 None:intergenic 40.0%
GTCAATGTCAGACCACTTTA+GGG + chr3.3:56979628-56979647 None:intergenic 40.0%
GTCCTTAGGATCTAAGTTCT+AGG - chr3.3:56981424-56981443 MS.gene55695:CDS 40.0%
TCATGTTCTTACGTGATCCA+TGG + chr3.3:56980107-56980126 None:intergenic 40.0%
TCCATGCAGTCATGAAAATC+GGG + chr3.3:56980756-56980775 None:intergenic 40.0%
TTAGCAACTGACACCTCTAA+GGG + chr3.3:56980828-56980847 None:intergenic 40.0%
TTCTTGCCAGAATTCGAAGT+AGG + chr3.3:56979512-56979531 None:intergenic 40.0%
TTTAACCATCCTGTTCTCTG+GGG + chr3.3:56979595-56979614 None:intergenic 40.0%
TTTAGCAACTGACACCTCTA+AGG + chr3.3:56980829-56980848 None:intergenic 40.0%
! CATCAAGAGTTGGTCATTTG+TGG - chr3.3:56980598-56980617 MS.gene55695:CDS 40.0%
! GTTAGAAAGGATGTGCCTTT+TGG + chr3.3:56979102-56979121 None:intergenic 40.0%
! TCGGGATCGATTCAATAACT+TGG + chr3.3:56980738-56980757 None:intergenic 40.0%
! TGGAGAGCGTAATAAAGAAC+AGG - chr3.3:56979983-56980002 MS.gene55695:intron 40.0%
!! AGACTGGATCGAGTTTTATC+AGG - chr3.3:56981085-56981104 MS.gene55695:intron 40.0%
AAGGGTGGATCTCTATCTGA+TGG + chr3.3:56980905-56980924 None:intergenic 45.0%
AATCTGCCAAAACACGCACA+GGG + chr3.3:56981055-56981074 None:intergenic 45.0%
ACGAACCATCGGATCTTGAT+CGG - chr3.3:56980647-56980666 MS.gene55695:intron 45.0%
ACTTTACCAAGAAACTGCGG+AGG - chr3.3:56980051-56980070 MS.gene55695:intron 45.0%
CCACTCTTACCTCTTCCAAA+AGG - chr3.3:56979084-56979103 MS.gene55695:CDS 45.0%
CGCAGTTTCTTGGTAAAGTC+AGG + chr3.3:56980050-56980069 None:intergenic 45.0%
GGCCGAACTCTAGATTACTA+GGG - chr3.3:56979562-56979581 MS.gene55695:intron 45.0%
GTAGGAGAGACCAAACTCAT+TGG + chr3.3:56979140-56979159 None:intergenic 45.0%
GTTGCTCTAGTGTCAACCAA+CGG - chr3.3:56980080-56980099 MS.gene55695:intron 45.0%
TAGAGATCCACCCTTTCAAG+TGG - chr3.3:56980910-56980929 MS.gene55695:intron 45.0%
TAGCAACTGACACCTCTAAG+GGG + chr3.3:56980827-56980846 None:intergenic 45.0%
TCCCATTCTGTTTCGGTAAC+CGG - chr3.3:56981275-56981294 MS.gene55695:intron 45.0%
TCCGGTTACCGAAACAGAAT+GGG + chr3.3:56981279-56981298 None:intergenic 45.0%
TGGCCGAACTCTAGATTACT+AGG - chr3.3:56979561-56979580 MS.gene55695:intron 45.0%
TTCACCTCTTTCTGTCCAGA+GGG + chr3.3:56981238-56981257 None:intergenic 45.0%
TTCCAGCTTAGTAGGATTGG+AGG + chr3.3:56981146-56981165 None:intergenic 45.0%
TTCCGGTTACCGAAACAGAA+TGG + chr3.3:56981280-56981299 None:intergenic 45.0%
TTCTCTTGTTGCTGGTAGCA+AGG + chr3.3:56980443-56980462 None:intergenic 45.0%
TTTGAACGTCGTCGCTACTA+TGG - chr3.3:56979963-56979982 MS.gene55695:intron 45.0%
! ATCCTGTTCTCTGGGGAAAT+GGG + chr3.3:56979588-56979607 None:intergenic 45.0%
! GAAAAAGAAACCTTGGTGGC+AGG + chr3.3:56979245-56979264 None:intergenic 45.0%
! GAGTTGGTCATTTGTGGGAT+TGG - chr3.3:56980604-56980623 MS.gene55695:CDS 45.0%
! GGCCCTAGTAATCTAGAGTT+CGG + chr3.3:56979567-56979586 None:intergenic 45.0%
! TCCCGATTTTCATGACTGCA+TGG - chr3.3:56980752-56980771 MS.gene55695:intron 45.0%
!! AAGGATGTGCCTTTTGGAAG+AGG + chr3.3:56979096-56979115 None:intergenic 45.0%
!! CCTTTTGGAAGAGGTAAGAG+TGG + chr3.3:56979087-56979106 None:intergenic 45.0%
!!! ATTAAACTTTTTAAAAATAT+TGG - chr3.3:56980464-56980483 MS.gene55695:CDS 5.0%
ACCATCGGATCTTGATCGGA+TGG - chr3.3:56980651-56980670 MS.gene55695:intron 50.0%
ACTCTAGATTGCCTGCAGTC+AGG + chr3.3:56980781-56980800 None:intergenic 50.0%
AGCCTCCAATCCTACTAAGC+TGG - chr3.3:56981141-56981160 MS.gene55695:intron 50.0%
ATCTGCCAAAACACGCACAG+GGG + chr3.3:56981054-56981073 None:intergenic 50.0%
CATTTCCCCAGAGAACAGGA+TGG - chr3.3:56979587-56979606 MS.gene55695:intron 50.0%
GAATCTGCCAAAACACGCAC+AGG + chr3.3:56981056-56981075 None:intergenic 50.0%
GTTCACCTCTTTCTGTCCAG+AGG + chr3.3:56981239-56981258 None:intergenic 50.0%
GTTGACACTAGAGCAACAGC+AGG + chr3.3:56980077-56980096 None:intergenic 50.0%
TAGTGTCAACCAACGGTCCA+TGG - chr3.3:56980087-56980106 MS.gene55695:intron 50.0%
TGAGAAGCCTGCAAAATGGG+TGG - chr3.3:56981168-56981187 MS.gene55695:intron 50.0%
TGGGAAACTTTCTTGCCCTC+TGG - chr3.3:56981220-56981239 MS.gene55695:intron 50.0%
TTACGTGATCCATGGACCGT+TGG + chr3.3:56980099-56980118 None:intergenic 50.0%
! CATCCTGTTCTCTGGGGAAA+TGG + chr3.3:56979589-56979608 None:intergenic 50.0%
CTGCATGGATTCCTGACTGC+AGG - chr3.3:56980767-56980786 MS.gene55695:intron 55.0%
CTTGCCCTCTGGACAGAAAG+AGG - chr3.3:56981231-56981250 MS.gene55695:intron 55.0%
GCCATCCGATCAAGATCCGA+TGG + chr3.3:56980655-56980674 None:intergenic 55.0%
TTCTGATGCTCCTGCCACCA+AGG - chr3.3:56979232-56979251 MS.gene55695:intron 55.0%
!! TAGGGTGCCACCCATTTTGC+AGG + chr3.3:56981178-56981197 None:intergenic 55.0%
AGCAGGCCTCCGCAGTTTCT+TGG + chr3.3:56980060-56980079 None:intergenic 60.0%
GGCCCATTTCCCCAGAGAAC+AGG - chr3.3:56979583-56979602 MS.gene55695:intron 60.0%
! CTCTGCCCCTGTGCGTGTTT+TGG - chr3.3:56981046-56981065 MS.gene55695:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 56979071 56981473 56979071 ID=MS.gene55695
chr3.3 mRNA 56979071 56981473 56979071 ID=MS.gene55695.t1;Parent=MS.gene55695
chr3.3 exon 56981291 56981473 56981291 ID=MS.gene55695.t1.exon1;Parent=MS.gene55695.t1
chr3.3 CDS 56981291 56981473 56981291 ID=cds.MS.gene55695.t1;Parent=MS.gene55695.t1
chr3.3 exon 56980430 56980662 56980430 ID=MS.gene55695.t1.exon2;Parent=MS.gene55695.t1
chr3.3 CDS 56980430 56980662 56980430 ID=cds.MS.gene55695.t1;Parent=MS.gene55695.t1
chr3.3 exon 56979292 56979472 56979292 ID=MS.gene55695.t1.exon3;Parent=MS.gene55695.t1
chr3.3 CDS 56979292 56979472 56979292 ID=cds.MS.gene55695.t1;Parent=MS.gene55695.t1
chr3.3 exon 56979071 56979112 56979071 ID=MS.gene55695.t1.exon4;Parent=MS.gene55695.t1
chr3.3 CDS 56979071 56979112 56979071 ID=cds.MS.gene55695.t1;Parent=MS.gene55695.t1
Gene Sequence

>MS.gene55695

ATGGTAGCTCAAACCACTCTTACCTCTTCCAAAAGGCACATCCTTTCTAACAGAACTCACTCTTTACCAATGAGTTTGGTCTCTCCTACAAACCAAAATTTCAAGAAACATAAACCTTTTATCACTGCTGTTACTTCTGTTCAATCTGACAACGTTAGCTCTTCTGATGCTCCTGCCACCAAGGTTTCTTTTTCTCTTTACTAATCCCACATTATTACTATCTGTTTTGTTTAATATTTAGTTATTTTTCTACTAAGTTGTTGATTTGTAATGATCCTACAATATGAATGAGGTTAGAATGGTATTTCACTGTATAGAAAGTTTTTTATTGAATCACCAAAGTTGCCTTCAAAATTGCATGTGTAAACTTAGTCCTAAAATTGAAAATCCTTGATCACATTATGTTAATTTGATCCCTAAAGTGGTCTCTAGAAGAATCCTACTTCGAATTCTGGCAAGAACTATTTTTGGTCAAACTTTACTTAACTTCTGGCCGAACTCTAGATTACTAGGGCCCATTTCCCCAGAGAACAGGATGGTTAAAAAAATAAAAACCCTAAAGTGGTCTGACATTGACTAATGTGATCGAGTATTTTCGATTTCAGAAACCATTATACAATTTCGTTCATTTAAGTATCAAATTGGAGAACTACTAGTTTGATTTCAGGAACTGAATTGGTGATTCATTGGTGTTTGAGCTATGCAATTAACTGTTGTTCTTGATGACTTATAAGCATTGGATTCATGTAGTACTTATTGAGTTGGTTTTTGTGGTAATGATTAGTTTATTCTTTTTTGTTTTGTTGCTCAGAGTGAGTTCACCAAGTATTATTTTATTGTTGCAAATGCAAAATTTATGCTCGATGAGGAGGAGCATTTCCAAGAACAGCTATTTGAACGTCGTCGCTACTATGGAGAGCGTAATAAAGAACAGGATTACTGGCTTGTCATTGAGCCTAAATTCTTGGATAGTTTTCCTGACTTTACCAAGAAACTGCGGAGGCCTGCTGTTGCTCTAGTGTCAACCAACGGTCCATGGATCACGTAAGAACATGAATCAATTCTTCATTTTTAAGTGCCAGAGTTTCTGTCATAAACTTTGAAAAGTGGACAATTCATTTGGATTAGATGCTCATCAAAATACACTATAATCAGCATATCTCAATCGTTGGATTAAAATCAGAATGTTTGCATCCGAAGTTTATATTTGAAATGAGATTTGGAAAAGTCTGAATATGACCGTATGATCTTAAGACAATGACTGGGATGCGATTCAAATCATTTTGTTATTTGCCATATATTGGATTTGGGTTCCTCCTTTTAGAGTCCACTAATAGTATTGAAAAGATGTCTCTTTTTGTCTCTAATACCTTGCTACCAGCAACAAGAGAAAATTAAACTTTTTAAAAATATTGGAAAACATTCTTAGAGTTGAATGTAGCTGCTCTTCACAAATCCCCAGTCACCTATAGTTAACATCATAAGCTAAGCCTAATAGCTAACATAGATGTCTTTTTTATATGCTTGCATCAAGAGTTGGTCATTTGTGGGATTGGGTTCCCCACAATTAAAAAAAACGAACCATCGGATCTTGATCGGATGGCACACAACATCAAGATTTGAGCTTGTTTTTGTTTTTAGGTATGTTTTCCCGAGCTTAAAATCCAAGTTATTGAATCGATCCCGATTTTCATGACTGCATGGATTCCTGACTGCAGGCAATCTAGAGTCTTCATTTTCTTTTTTCTTTTTACCCCTTAGAGGTGTCAGTTGCTAAAAATTATAAGCGTTTGCTCTTCCCTTTTTGCATCTCTACTTTTAGCGTCTAGATCCATCAGATAGAGATCCACCCTTTCAAGTGGTATAATATGAATAAAAATTGTAAGAAAGAAGGGTATGATCAATTAAATTTCTGCAATGCAAGCTGTCAACATATAATAAAATGGCAGCTTTTGATGTTTCAGACAAATTTTAACTCTGCCCCTGTGCGTGTTTTGGCAGATTCATGAAATTAAGACTGGATCGAGTTTTATCAGGAAGTTTTGAAGCTGACAGCTTAGAAGAAGCATTAGCCTCCAATCCTACTAAGCTGGAATTTGAGAAGCCTGCAAAATGGGTGGCACCCTATCCTAAATATGAATCTGGATGGTGGGAAACTTTCTTGCCCTCTGGACAGAAAGAGGTGAACTCTTAAGACATTTTTTTCCCATTCTGTTTCGGTAACCGGAATTTGTAGATCTATTTCTCCAACAATTTTTGTTAATGTAAAACTGGATGTAGTTTATGTCAGCTAAATTTGCTTTCAGTTTTGTAATTTTTGGAAGGCAGTATAATTATTTAAAGTTGAATTGTTGTCCTTAGGATCTAAGTTCTAGGTATTGTTTCTATGCCTCAAATGAGTGA

Protein sequence

>MS.gene55695.t1

MVAQTTLTSSKRHILSNRTHSLPMSLVSPTNQNFKKHKPFITAVTSVQSDNVSSSDAPATKSEFTKYYFIVANAKFMLDEEEHFQEQLFERRRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPWITFMKLRLDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQKEDLSSRYCFYASNE