Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63301.t1 | XP_024635440.1 | 96.8 | 188 | 6 | 0 | 1 | 188 | 1 | 188 | 4.40E-46 | 194.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63301.t1 | O22160 | 51.5 | 103 | 48 | 2 | 1 | 102 | 1 | 102 | 1.5e-13 | 77.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63301.t1 | A0A072V034 | 94.1 | 102 | 6 | 0 | 1 | 102 | 1 | 102 | 4.3e-43 | 184.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene63301 | 0.817328 | 3.49E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene63301 | 0.828496 | 8.70E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene63301 | 0.824426 | 8.13E-54 | -1.69E-46 |
| MS.gene049320 | MS.gene63301 | 0.823164 | 1.61E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene63301 | 0.80608 | 9.78E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene63301 | 0.856679 | 2.73E-62 | -1.69E-46 |
| MS.gene049609 | MS.gene63301 | 0.809564 | 1.78E-50 | -1.69E-46 |
| MS.gene049614 | MS.gene63301 | 0.816477 | 5.42E-52 | -1.69E-46 |
| MS.gene049615 | MS.gene63301 | 0.828814 | 7.29E-55 | -1.69E-46 |
| MS.gene049661 | MS.gene63301 | 0.817674 | 2.92E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene63301 | 0.812919 | 3.33E-51 | -1.69E-46 |
| MS.gene049760 | MS.gene63301 | 0.830897 | 2.27E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene63301 | 0.816528 | 5.28E-52 | -1.69E-46 |
| MS.gene049828 | MS.gene63301 | 0.821983 | 3.02E-53 | -1.69E-46 |
| MS.gene050076 | MS.gene63301 | 0.863067 | 3.24E-64 | -1.69E-46 |
| MS.gene050163 | MS.gene63301 | 0.851087 | 1.11E-60 | -1.69E-46 |
| MS.gene050165 | MS.gene63301 | 0.823807 | 1.14E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene63301 | 0.812459 | 4.19E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene63301 | 0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene050353 | MS.gene63301 | -0.826207 | 3.08E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene63301 | 0.863772 | 1.96E-64 | -1.69E-46 |
| MS.gene050593 | MS.gene63301 | 0.822625 | 2.14E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene63301 | 0.810271 | 1.25E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene63301 | 0.889721 | 1.88E-73 | -1.69E-46 |
| MS.gene050770 | MS.gene63301 | 0.890757 | 7.38E-74 | -1.69E-46 |
| MS.gene050772 | MS.gene63301 | 0.824959 | 6.09E-54 | -1.69E-46 |
| MS.gene050781 | MS.gene63301 | 0.810294 | 1.24E-50 | -1.69E-46 |
| MS.gene050783 | MS.gene63301 | 0.864026 | 1.63E-64 | -1.69E-46 |
| MS.gene050950 | MS.gene63301 | 0.808698 | 2.73E-50 | -1.69E-46 |
| MS.gene05100 | MS.gene63301 | 0.837142 | 6.19E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene63301 | 0.861021 | 1.37E-63 | -1.69E-46 |
| MS.gene051228 | MS.gene63301 | 0.867112 | 1.74E-65 | -1.69E-46 |
| MS.gene051387 | MS.gene63301 | 0.821049 | 4.96E-53 | -1.69E-46 |
| MS.gene051471 | MS.gene63301 | 0.805002 | 1.65E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene63301 | 0.860693 | 1.73E-63 | -1.69E-46 |
| MS.gene051692 | MS.gene63301 | 0.81443 | 1.55E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene63301 | 0.829736 | 4.36E-55 | -1.69E-46 |
| MS.gene051810 | MS.gene63301 | 0.814703 | 1.35E-51 | -1.69E-46 |
| MS.gene051877 | MS.gene63301 | 0.807333 | 5.32E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene63301 | 0.842344 | 2.74E-58 | -1.69E-46 |
| MS.gene052271 | MS.gene63301 | 0.841784 | 3.85E-58 | -1.69E-46 |
| MS.gene052290 | MS.gene63301 | 0.865607 | 5.22E-65 | -1.69E-46 |
| MS.gene052310 | MS.gene63301 | 0.81047 | 1.13E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene63301 | 0.80809 | 3.67E-50 | -1.69E-46 |
| MS.gene052326 | MS.gene63301 | 0.864903 | 8.70E-65 | -1.69E-46 |
| MS.gene052379 | MS.gene63301 | 0.852342 | 4.92E-61 | -1.69E-46 |
| MS.gene052484 | MS.gene63301 | 0.806126 | 9.57E-50 | -1.69E-46 |
| MS.gene052508 | MS.gene63301 | 0.801318 | 9.53E-49 | -1.69E-46 |
| MS.gene052510 | MS.gene63301 | 0.816548 | 5.22E-52 | -1.69E-46 |
| MS.gene053009 | MS.gene63301 | 0.858981 | 5.67E-63 | -1.69E-46 |
| MS.gene053103 | MS.gene63301 | 0.837121 | 6.27E-57 | -1.69E-46 |
| MS.gene053104 | MS.gene63301 | 0.862857 | 3.76E-64 | -1.69E-46 |
| MS.gene053107 | MS.gene63301 | 0.850134 | 2.07E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene63301 | 0.848344 | 6.51E-60 | -1.69E-46 |
| MS.gene053209 | MS.gene63301 | 0.819692 | 1.02E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene63301 | 0.847599 | 1.04E-59 | -1.69E-46 |
| MS.gene053286 | MS.gene63301 | 0.839462 | 1.56E-57 | -1.69E-46 |
| MS.gene053322 | MS.gene63301 | 0.894312 | 2.78E-75 | -1.69E-46 |
| MS.gene053632 | MS.gene63301 | 0.829009 | 6.54E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene63301 | 0.827946 | 1.18E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene63301 | 0.89932 | 2.23E-77 | -1.69E-46 |
| MS.gene05455 | MS.gene63301 | 0.814043 | 1.88E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene63301 | 0.818377 | 2.02E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene63301 | 0.849977 | 2.29E-60 | -1.69E-46 |
| MS.gene054802 | MS.gene63301 | 0.88438 | 2.02E-71 | -1.69E-46 |
| MS.gene054803 | MS.gene63301 | 0.886228 | 4.11E-72 | -1.69E-46 |
| MS.gene054804 | MS.gene63301 | 0.887834 | 1.01E-72 | -1.69E-46 |
| MS.gene05505 | MS.gene63301 | 0.801647 | 8.16E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene63301 | 0.80082 | 1.20E-48 | -1.69E-46 |
| MS.gene055212 | MS.gene63301 | 0.810847 | 9.40E-51 | -1.69E-46 |
| MS.gene055254 | MS.gene63301 | 0.879981 | 7.99E-70 | -1.69E-46 |
| MS.gene055277 | MS.gene63301 | 0.823321 | 1.47E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene63301 | 0.812585 | 3.94E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene63301 | 0.811468 | 6.90E-51 | -1.69E-46 |
| MS.gene055397 | MS.gene63301 | 0.880703 | 4.41E-70 | -1.69E-46 |
| MS.gene055412 | MS.gene63301 | 0.806219 | 9.15E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene63301 | 0.910017 | 3.00E-82 | -1.69E-46 |
| MS.gene055636 | MS.gene63301 | 0.816293 | 5.96E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene63301 | 0.857334 | 1.75E-62 | -1.69E-46 |
| MS.gene055722 | MS.gene63301 | 0.824682 | 7.07E-54 | -1.69E-46 |
| MS.gene055896 | MS.gene63301 | 0.832914 | 7.20E-56 | -1.69E-46 |
| MS.gene05592 | MS.gene63301 | 0.86242 | 5.13E-64 | -1.69E-46 |
| MS.gene056083 | MS.gene63301 | 0.861589 | 9.23E-64 | -1.69E-46 |
| MS.gene056374 | MS.gene63301 | 0.862281 | 5.66E-64 | -1.69E-46 |
| MS.gene056407 | MS.gene63301 | 0.817973 | 2.50E-52 | -1.69E-46 |
| MS.gene056410 | MS.gene63301 | 0.846262 | 2.43E-59 | -1.69E-46 |
| MS.gene056609 | MS.gene63301 | 0.839703 | 1.35E-57 | -1.69E-46 |
| MS.gene056612 | MS.gene63301 | 0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene63301 | 0.826153 | 3.17E-54 | -1.69E-46 |
| MS.gene056897 | MS.gene63301 | 0.827272 | 1.71E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene63301 | 0.8606 | 1.85E-63 | -1.69E-46 |
| MS.gene057123 | MS.gene63301 | 0.813973 | 1.95E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene63301 | 0.906879 | 9.25E-81 | -1.69E-46 |
| MS.gene057146 | MS.gene63301 | 0.831898 | 1.29E-55 | -1.69E-46 |
| MS.gene057246 | MS.gene63301 | 0.832673 | 8.26E-56 | -1.69E-46 |
| MS.gene057295 | MS.gene63301 | 0.863881 | 1.81E-64 | -1.69E-46 |
| MS.gene057331 | MS.gene63301 | 0.855692 | 5.32E-62 | -1.69E-46 |
| MS.gene05735 | MS.gene63301 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene63301 | 0.865935 | 4.11E-65 | -1.69E-46 |
| MS.gene058019 | MS.gene63301 | 0.833954 | 3.96E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene63301 | 0.827912 | 1.20E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene63301 | 0.865444 | 5.88E-65 | -1.69E-46 |
| MS.gene058323 | MS.gene63301 | 0.878828 | 2.05E-69 | -1.69E-46 |
| MS.gene058419 | MS.gene63301 | 0.814873 | 1.23E-51 | -1.69E-46 |
| MS.gene058544 | MS.gene63301 | 0.806524 | 7.89E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene63301 | 0.866443 | 2.84E-65 | -1.69E-46 |
| MS.gene058723 | MS.gene63301 | 0.825387 | 4.82E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene63301 | 0.825704 | 4.05E-54 | -1.69E-46 |
| MS.gene058787 | MS.gene63301 | 0.811556 | 6.60E-51 | -1.69E-46 |
| MS.gene05883 | MS.gene63301 | 0.80187 | 7.34E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene63301 | 0.827734 | 1.33E-54 | -1.69E-46 |
| MS.gene059326 | MS.gene63301 | 0.822995 | 1.76E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene63301 | 0.825239 | 5.22E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene63301 | 0.867631 | 1.19E-65 | -1.69E-46 |
| MS.gene059597 | MS.gene63301 | 0.801677 | 8.04E-49 | -1.69E-46 |
| MS.gene05959 | MS.gene63301 | 0.811807 | 5.82E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene63301 | 0.82033 | 7.26E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene63301 | 0.818997 | 1.46E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene63301 | 0.820887 | 5.41E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene63301 | 0.821802 | 3.33E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene63301 | 0.822449 | 2.36E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene63301 | 0.826268 | 2.98E-54 | -1.69E-46 |
| MS.gene059858 | MS.gene63301 | 0.816156 | 6.39E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene63301 | 0.899142 | 2.65E-77 | -1.69E-46 |
| MS.gene060193 | MS.gene63301 | 0.830397 | 3.00E-55 | -1.69E-46 |
| MS.gene060356 | MS.gene63301 | 0.810464 | 1.14E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene63301 | 0.80239 | 5.74E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene63301 | 0.869344 | 3.32E-66 | -1.69E-46 |
| MS.gene060818 | MS.gene63301 | 0.827331 | 1.66E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene63301 | 0.822729 | 2.03E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene63301 | 0.820251 | 7.57E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene63301 | -0.825701 | 4.06E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene63301 | 0.847358 | 1.22E-59 | -1.69E-46 |
| MS.gene061200 | MS.gene63301 | 0.896594 | 3.17E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63301.t1 | MTR_3g068150 | 96.791 | 187 | 6 | 0 | 1 | 187 | 1 | 187 | 2.19e-126 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63301.t1 | AT2G44920 | 86.331 | 139 | 19 | 0 | 50 | 188 | 50 | 188 | 2.89e-81 | 240 |
| MS.gene63301.t1 | AT2G44920 | 86.232 | 138 | 19 | 0 | 50 | 187 | 50 | 187 | 2.47e-80 | 238 |
Find 44 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCTATCTCTCTGTTTC+TGG | 0.179667 | 3.3:-60398232 | MS.gene63301:intron |
| TTTAAAGGTGCAAAATTATT+AGG | 0.209764 | 3.3:-60397469 | MS.gene63301:CDS |
| ACTAGGGGACAAGATCTTTC+TGG | 0.219620 | 3.3:-60397690 | MS.gene63301:CDS |
| AAATTTGAGCAATGCTAATT+TGG | 0.246193 | 3.3:-60396676 | MS.gene63301:CDS |
| CATACCGGCGCCTGTAATAT+TGG | 0.263857 | 3.3:+60396614 | None:intergenic |
| TTCTTTGATGCTGATTTAAC+AGG | 0.300432 | 3.3:-60397439 | MS.gene63301:intron |
| AAAATTGGCTTGACGCAGTA+TGG | 0.314554 | 3.3:+60397489 | None:intergenic |
| TTTAAGGGATCCAATATTAC+AGG | 0.328394 | 3.3:-60396624 | MS.gene63301:CDS |
| TGATCCTGCACTTGCATTCA+AGG | 0.342254 | 3.3:-60398012 | MS.gene63301:intron |
| GATGCTTGGTGAGTTTGCTT+TGG | 0.375494 | 3.3:+60398116 | None:intergenic |
| TAAGAGATGGTGATGAGGTT+TGG | 0.381918 | 3.3:+60398287 | None:intergenic |
| CATATGGTCAAGGAGTTACT+AGG | 0.385923 | 3.3:-60397707 | MS.gene63301:CDS |
| TGGTGATGAATGCAGGGTGG+AGG | 0.398777 | 3.3:-60397732 | MS.gene63301:intron |
| CTAGTAACTCCTTGACCATA+TGG | 0.403791 | 3.3:+60397708 | None:intergenic |
| CATGTCAGGTGCTGATCTTT+CGG | 0.407019 | 3.3:-60397324 | MS.gene63301:intron |
| TTGGAAGGTGCACTTGTAAC+GGG | 0.417101 | 3.3:-60396657 | MS.gene63301:CDS |
| CTAGGGGACAAGATCTTTCT+GGG | 0.423220 | 3.3:-60397689 | MS.gene63301:CDS |
| CGAACCAGAAACAGAGAGAT+AGG | 0.437434 | 3.3:+60398228 | None:intergenic |
| AACCTCATCACCATCTCTTA+AGG | 0.447203 | 3.3:-60398284 | MS.gene63301:CDS |
| AGAGATAGGAGTTGGTGAGC+AGG | 0.464069 | 3.3:+60398242 | None:intergenic |
| ATGCAGGGTGGAGGGCCATA+TGG | 0.478492 | 3.3:-60397723 | MS.gene63301:intron |
| TTACCTTTGTCACATTTGCC+AGG | 0.489767 | 3.3:+60397273 | None:intergenic |
| AGTTGGTGAGCAGGTTGAAG+AGG | 0.491050 | 3.3:+60398251 | None:intergenic |
| GGTGAGCAGGTTGAAGAGGA+AGG | 0.497485 | 3.3:+60398255 | None:intergenic |
| CAGAAACTCACATTATCATT+CGG | 0.504813 | 3.3:-60398092 | MS.gene63301:CDS |
| TTTGGAAGGTGCACTTGTAA+CGG | 0.505123 | 3.3:-60396658 | MS.gene63301:CDS |
| TTGAGCAATGCTAATTTGGA+AGG | 0.506866 | 3.3:-60396672 | MS.gene63301:CDS |
| AGAAACAGAGAGATAGGAGT+TGG | 0.558423 | 3.3:+60398234 | None:intergenic |
| TGATGAGGTTTGGAAGTTGA+AGG | 0.562107 | 3.3:+60398297 | None:intergenic |
| ATATGGTCAAGGAGTTACTA+GGG | 0.565044 | 3.3:-60397706 | MS.gene63301:CDS |
| TATACCTTGAATGCAAGTGC+AGG | 0.570494 | 3.3:+60398008 | None:intergenic |
| GGTGATGAATGCAGGGTGGA+GGG | 0.574556 | 3.3:-60397731 | MS.gene63301:intron |
| GGATCCAATATTACAGGCGC+CGG | 0.582010 | 3.3:-60396618 | MS.gene63301:CDS |
| GGTGGAGGGCCATATGGTCA+AGG | 0.584439 | 3.3:-60397717 | MS.gene63301:CDS |
| TACCTTTGTCACATTTGCCA+GGG | 0.587787 | 3.3:+60397274 | None:intergenic |
| TTCCCTGGCAAATGTGACAA+AGG | 0.601317 | 3.3:-60397276 | MS.gene63301:intron |
| ATGTGAGTTTCTGAGATGCT+TGG | 0.612261 | 3.3:+60398102 | None:intergenic |
| CTTTCTGGGAAAGATTTCAG+TGG | 0.615907 | 3.3:-60397675 | MS.gene63301:CDS |
| TTTGGAAGTTGAAGGCAAAG+AGG | 0.617513 | 3.3:+60398305 | None:intergenic |
| CATCAAGCAAGACTTCAAAA+CGG | 0.635311 | 3.3:-60397643 | MS.gene63301:intron |
| AAGGTGTTGACCTTAAGAGA+TGG | 0.643063 | 3.3:+60398274 | None:intergenic |
| GACCTTAAGAGATGGTGATG+AGG | 0.653487 | 3.3:+60398282 | None:intergenic |
| ATAGTGATACTACTACATAC+CGG | 0.658992 | 3.3:+60396599 | None:intergenic |
| TATGGTCAAGGAGTTACTAG+GGG | 0.721516 | 3.3:-60397705 | MS.gene63301:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAGAAATTAAATTAAAA+TGG | - | chr3.3:60397997-60398016 | MS.gene63301:intron | 10.0% |
| !! | GTTAATAAACTGAATTATAT+TGG | + | chr3.3:60397780-60397799 | None:intergenic | 15.0% |
| !! | TATAAGTATAACTGTTTATT+AGG | + | chr3.3:60397924-60397943 | None:intergenic | 15.0% |
| !! | TTCTTCAAATAATATAACAA+AGG | + | chr3.3:60397951-60397970 | None:intergenic | 15.0% |
| !!! | TAATTTCTTAACATTCTTTT+GGG | + | chr3.3:60397989-60398008 | None:intergenic | 15.0% |
| !!! | TTAATTTCTTAACATTCTTT+TGG | + | chr3.3:60397990-60398009 | None:intergenic | 15.0% |
| !!! | TTTTTTGGTTAACAAATAAT+GGG | - | chr3.3:60397173-60397192 | MS.gene63301:intron | 15.0% |
| !!! | CTTTTTTGGTTAACAAATAA+TGG | - | chr3.3:60397172-60397191 | MS.gene63301:intron | 20.0% |
| !!! | GTTAAAGTTTTGTTCTTTTT+TGG | - | chr3.3:60397158-60397177 | MS.gene63301:intron | 20.0% |
| !!! | TAATTTTGCACCTTTAAAAT+TGG | + | chr3.3:60397464-60397483 | None:intergenic | 20.0% |
| !!! | TTTAAAGGTGCAAAATTATT+AGG | - | chr3.3:60397466-60397485 | MS.gene63301:CDS | 20.0% |
| !!! | TTTATTAGGTTGTTGAATAA+TGG | + | chr3.3:60397910-60397929 | None:intergenic | 20.0% |
| ! | AAACATTCATATTGAAGTGT+TGG | + | chr3.3:60396973-60396992 | None:intergenic | 25.0% |
| ! | AAATTTGAGCAATGCTAATT+TGG | - | chr3.3:60398259-60398278 | MS.gene63301:CDS | 25.0% |
| ! | AACTGAATTATATTGGACTA+AGG | + | chr3.3:60397773-60397792 | None:intergenic | 25.0% |
| ! | ACTGAATTATATTGGACTAA+GGG | + | chr3.3:60397772-60397791 | None:intergenic | 25.0% |
| ! | ATAACAACAAAGCAAAGAAA+AGG | + | chr3.3:60397810-60397829 | None:intergenic | 25.0% |
| ! | CAACACAATAAATTGAGAAA+TGG | + | chr3.3:60398218-60398237 | None:intergenic | 25.0% |
| ! | CATTTCTCAATTTATTGTGT+TGG | - | chr3.3:60398216-60398235 | MS.gene63301:intron | 25.0% |
| ! | CTTCAATATGAATGTTTATC+TGG | - | chr3.3:60396976-60396995 | MS.gene63301:intron | 25.0% |
| ! | TCAGCTAAATTAATACTTGT+AGG | + | chr3.3:60398146-60398165 | None:intergenic | 25.0% |
| ! | TTGTTAATTACAGTGATTTG+AGG | + | chr3.3:60398182-60398201 | None:intergenic | 25.0% |
| !! | CATTCATTGTGATACATTTT+TGG | + | chr3.3:60397533-60397552 | None:intergenic | 25.0% |
| !! | TTTTTCATGCTCATTATGAT+AGG | - | chr3.3:60397689-60397708 | MS.gene63301:CDS | 25.0% |
| !!! | AGTTTAAGTTGATTTGATGA+CGG | - | chr3.3:60397350-60397369 | MS.gene63301:intron | 25.0% |
| !!! | ATTAAGCAAAGTTTTGAACA+AGG | + | chr3.3:60397836-60397855 | None:intergenic | 25.0% |
| ATGAATGTAGTATACACACA+TGG | - | chr3.3:60397546-60397565 | MS.gene63301:intron | 30.0% | |
| ATGGCAAATTAGAAGATTCA+AGG | - | chr3.3:60398016-60398035 | MS.gene63301:CDS | 30.0% | |
| CAGAAACTCACATTATCATT+CGG | - | chr3.3:60396843-60396862 | MS.gene63301:intron | 30.0% | |
| TCATTATGATAGGATCTGAT+GGG | - | chr3.3:60397699-60397718 | MS.gene63301:CDS | 30.0% | |
| TGGCAAATTAGAAGATTCAA+GGG | - | chr3.3:60398017-60398036 | MS.gene63301:CDS | 30.0% | |
| TTTAAGGGATCCAATATTAC+AGG | - | chr3.3:60398311-60398330 | MS.gene63301:CDS | 30.0% | |
| ! | AACGGGAAATACATCTTTTA+AGG | - | chr3.3:60398295-60398314 | MS.gene63301:CDS | 30.0% |
| ! | ACGGGAAATACATCTTTTAA+GGG | - | chr3.3:60398296-60398315 | MS.gene63301:CDS | 30.0% |
| !! | AACAAATAATGGGTATGGTT+TGG | - | chr3.3:60397183-60397202 | MS.gene63301:intron | 30.0% |
| !! | GTTTAAGTTGATTTGATGAC+GGG | - | chr3.3:60397351-60397370 | MS.gene63301:intron | 30.0% |
| !! | TGGTTAACAAATAATGGGTA+TGG | - | chr3.3:60397178-60397197 | MS.gene63301:intron | 30.0% |
| !! | TTCTTTGATGCTGATTTAAC+AGG | - | chr3.3:60397496-60397515 | MS.gene63301:intron | 30.0% |
| !! | TTTAAGTTGATTTGATGACG+GGG | - | chr3.3:60397352-60397371 | MS.gene63301:intron | 30.0% |
| !!! | CACTACAAGATTTTTTTGAC+AGG | + | chr3.3:60398084-60398103 | None:intergenic | 30.0% |
| !!! | TTGTGATACATTTTTGGTGT+TGG | + | chr3.3:60397527-60397546 | None:intergenic | 30.0% |
| AATAGCAGTGATTGAGAGTA+GGG | - | chr3.3:60397853-60397872 | MS.gene63301:intron | 35.0% | |
| ATATGGTCAAGGAGTTACTA+GGG | - | chr3.3:60397229-60397248 | MS.gene63301:intron | 35.0% | |
| CATCAAGCAAGACTTCAAAA+CGG | - | chr3.3:60397292-60397311 | MS.gene63301:CDS | 35.0% | |
| CTCATTATGATAGGATCTGA+TGG | - | chr3.3:60397698-60397717 | MS.gene63301:CDS | 35.0% | |
| GACAAAACATTGACACTTGT+CGG | + | chr3.3:60397005-60397024 | None:intergenic | 35.0% | |
| GGGGAGATATTGAATGTAAA+TGG | + | chr3.3:60397582-60397601 | None:intergenic | 35.0% | |
| TAATAGCAGTGATTGAGAGT+AGG | - | chr3.3:60397852-60397871 | MS.gene63301:intron | 35.0% | |
| TACGAACACTAACACAAACA+CGG | + | chr3.3:60397081-60397100 | None:intergenic | 35.0% | |
| TTGAGCAATGCTAATTTGGA+AGG | - | chr3.3:60398263-60398282 | MS.gene63301:CDS | 35.0% | |
| !! | TGATGCTGATTTAACAGGTT+TGG | - | chr3.3:60397501-60397520 | MS.gene63301:intron | 35.0% |
| AACCTCATCACCATCTCTTA+AGG | - | chr3.3:60396651-60396670 | MS.gene63301:CDS | 40.0% | |
| AACTCCTATCTCTCTGTTTC+TGG | - | chr3.3:60396703-60396722 | MS.gene63301:intron | 40.0% | |
| AGAAACAGAGAGATAGGAGT+TGG | + | chr3.3:60396704-60396723 | None:intergenic | 40.0% | |
| CACGGACACCAAACAAAATA+CGG | + | chr3.3:60397063-60397082 | None:intergenic | 40.0% | |
| CATATGGTCAAGGAGTTACT+AGG | - | chr3.3:60397228-60397247 | MS.gene63301:intron | 40.0% | |
| CTAGTAACTCCTTGACCATA+TGG | + | chr3.3:60397230-60397249 | None:intergenic | 40.0% | |
| TACCTTTGTCACATTTGCCA+GGG | + | chr3.3:60397664-60397683 | None:intergenic | 40.0% | |
| TATACCTTGAATGCAAGTGC+AGG | + | chr3.3:60396930-60396949 | None:intergenic | 40.0% | |
| TATGGTCAAGGAGTTACTAG+GGG | - | chr3.3:60397230-60397249 | MS.gene63301:intron | 40.0% | |
| TGATGAGGTTTGGAAGTTGA+AGG | + | chr3.3:60396641-60396660 | None:intergenic | 40.0% | |
| TTACCTTTGTCACATTTGCC+AGG | + | chr3.3:60397665-60397684 | None:intergenic | 40.0% | |
| TTTGGAAGTTGAAGGCAAAG+AGG | + | chr3.3:60396633-60396652 | None:intergenic | 40.0% | |
| ! | ATGACGGGGATAGTCAAATT+CGG | - | chr3.3:60397366-60397385 | MS.gene63301:intron | 40.0% |
| ! | CTGCGTCAAGCCAATTTTAA+AGG | - | chr3.3:60397451-60397470 | MS.gene63301:CDS | 40.0% |
| ! | CTTTCTGGGAAAGATTTCAG+TGG | - | chr3.3:60397260-60397279 | MS.gene63301:intron | 40.0% |
| ! | TAAGAGATGGTGATGAGGTT+TGG | + | chr3.3:60396651-60396670 | None:intergenic | 40.0% |
| ! | TGGTGTGTCCGTATTTTGTT+TGG | - | chr3.3:60397052-60397071 | MS.gene63301:intron | 40.0% |
| ! | TTTGGAAGGTGCACTTGTAA+CGG | - | chr3.3:60398277-60398296 | MS.gene63301:CDS | 40.0% |
| !! | AAAATTGGCTTGACGCAGTA+TGG | + | chr3.3:60397449-60397468 | None:intergenic | 40.0% |
| !! | AAGGTGTTGACCTTAAGAGA+TGG | + | chr3.3:60396664-60396683 | None:intergenic | 40.0% |
| !! | ATGGTTTGGTGATGAATGCA+GGG | - | chr3.3:60397197-60397216 | MS.gene63301:intron | 40.0% |
| !! | ATGTGAGTTTCTGAGATGCT+TGG | + | chr3.3:60396836-60396855 | None:intergenic | 40.0% |
| !! | TATGGTTTGGTGATGAATGC+AGG | - | chr3.3:60397196-60397215 | MS.gene63301:intron | 40.0% |
| ACTAGGGGACAAGATCTTTC+TGG | - | chr3.3:60397245-60397264 | MS.gene63301:intron | 45.0% | |
| ATCAGCACCTGACATGACAA+CGG | + | chr3.3:60397607-60397626 | None:intergenic | 45.0% | |
| CGAACCAGAAACAGAGAGAT+AGG | + | chr3.3:60396710-60396729 | None:intergenic | 45.0% | |
| CTAGGGGACAAGATCTTTCT+GGG | - | chr3.3:60397246-60397265 | MS.gene63301:intron | 45.0% | |
| GTATATGTGCTAGTGCTTCG+TGG | - | chr3.3:60397032-60397051 | MS.gene63301:intron | 45.0% | |
| TCACTCTACCACTCTTCACA+GGG | - | chr3.3:60396789-60396808 | MS.gene63301:intron | 45.0% | |
| TGATCCTGCACTTGCATTCA+AGG | - | chr3.3:60396923-60396942 | MS.gene63301:intron | 45.0% | |
| TTCCCTGGCAAATGTGACAA+AGG | - | chr3.3:60397659-60397678 | MS.gene63301:CDS | 45.0% | |
| TTGGCATTACTGCTTTCTGC+AGG | - | chr3.3:60398235-60398254 | MS.gene63301:CDS | 45.0% | |
| ! | GACCTTAAGAGATGGTGATG+AGG | + | chr3.3:60396656-60396675 | None:intergenic | 45.0% |
| ! | GATGCTTGGTGAGTTTGCTT+TGG | + | chr3.3:60396822-60396841 | None:intergenic | 45.0% |
| ! | TTGGAAGGTGCACTTGTAAC+GGG | - | chr3.3:60398278-60398297 | MS.gene63301:CDS | 45.0% |
| !! | CATGTCAGGTGCTGATCTTT+CGG | - | chr3.3:60397611-60397630 | MS.gene63301:intron | 45.0% |
| !! | TAGAAGTGCAGACTTTTCCC+TGG | - | chr3.3:60397644-60397663 | MS.gene63301:CDS | 45.0% |
| CATACCGGCGCCTGTAATAT+TGG | + | chr3.3:60398324-60398343 | None:intergenic | 50.0% | |
| CTCACTCTACCACTCTTCAC+AGG | - | chr3.3:60396788-60396807 | MS.gene63301:intron | 50.0% | |
| GATTGCTTCCCTGTGAAGAG+TGG | + | chr3.3:60396800-60396819 | None:intergenic | 50.0% | |
| GGATCCAATATTACAGGCGC+CGG | - | chr3.3:60398317-60398336 | MS.gene63301:CDS | 50.0% | |
| TCAGCACCTGACATGACAAC+GGG | + | chr3.3:60397606-60397625 | None:intergenic | 50.0% | |
| !! | AGAGATAGGAGTTGGTGAGC+AGG | + | chr3.3:60396696-60396715 | None:intergenic | 50.0% |
| !! | AGTTGGTGAGCAGGTTGAAG+AGG | + | chr3.3:60396687-60396706 | None:intergenic | 50.0% |
| !! | GTTTGGTGATGAATGCAGGG+TGG | - | chr3.3:60397200-60397219 | MS.gene63301:intron | 50.0% |
| ACCTGACATGACAACGGGTG+GGG | + | chr3.3:60397601-60397620 | None:intergenic | 55.0% | |
| CACCTGACATGACAACGGGT+GGG | + | chr3.3:60397602-60397621 | None:intergenic | 55.0% | |
| GGTGATGAATGCAGGGTGGA+GGG | - | chr3.3:60397204-60397223 | MS.gene63301:intron | 55.0% | |
| ! | GGTGAGCAGGTTGAAGAGGA+AGG | + | chr3.3:60396683-60396702 | None:intergenic | 55.0% |
| ! | TGGTGATGAATGCAGGGTGG+AGG | - | chr3.3:60397203-60397222 | MS.gene63301:intron | 55.0% |
| ATGCAGGGTGGAGGGCCATA+TGG | - | chr3.3:60397212-60397231 | MS.gene63301:intron | 60.0% | |
| GCACCTGACATGACAACGGG+TGG | + | chr3.3:60397603-60397622 | None:intergenic | 60.0% | |
| GGTGGAGGGCCATATGGTCA+AGG | - | chr3.3:60397218-60397237 | MS.gene63301:intron | 60.0% | |
| TCCCCACCCGTTGTCATGTC+AGG | - | chr3.3:60397597-60397616 | MS.gene63301:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 60396611 | 60398346 | 60396611 | ID=MS.gene63301 |
| chr3.3 | mRNA | 60396611 | 60398346 | 60396611 | ID=MS.gene63301.t1;Parent=MS.gene63301 |
| chr3.3 | exon | 60398233 | 60398346 | 60398233 | ID=MS.gene63301.t1.exon1;Parent=MS.gene63301.t1 |
| chr3.3 | CDS | 60398233 | 60398346 | 60398233 | ID=cds.MS.gene63301.t1;Parent=MS.gene63301.t1 |
| chr3.3 | exon | 60398013 | 60398147 | 60398013 | ID=MS.gene63301.t1.exon2;Parent=MS.gene63301.t1 |
| chr3.3 | CDS | 60398013 | 60398147 | 60398013 | ID=cds.MS.gene63301.t1;Parent=MS.gene63301.t1 |
| chr3.3 | exon | 60397644 | 60397739 | 60397644 | ID=MS.gene63301.t1.exon3;Parent=MS.gene63301.t1 |
| chr3.3 | CDS | 60397644 | 60397739 | 60397644 | ID=cds.MS.gene63301.t1;Parent=MS.gene63301.t1 |
| chr3.3 | exon | 60397440 | 60397512 | 60397440 | ID=MS.gene63301.t1.exon4;Parent=MS.gene63301.t1 |
| chr3.3 | CDS | 60397440 | 60397512 | 60397440 | ID=cds.MS.gene63301.t1;Parent=MS.gene63301.t1 |
| chr3.3 | exon | 60397277 | 60397338 | 60397277 | ID=MS.gene63301.t1.exon5;Parent=MS.gene63301.t1 |
| chr3.3 | CDS | 60397277 | 60397338 | 60397277 | ID=cds.MS.gene63301.t1;Parent=MS.gene63301.t1 |
| chr3.3 | exon | 60396611 | 60396700 | 60396611 | ID=MS.gene63301.t1.exon6;Parent=MS.gene63301.t1 |
| chr3.3 | CDS | 60396611 | 60396700 | 60396611 | ID=cds.MS.gene63301.t1;Parent=MS.gene63301.t1 |
| Gene Sequence |
| Protein sequence |
