Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75861.t1 | XP_003595518.1 | 90 | 309 | 31 | 0 | 1 | 309 | 1 | 309 | 5.50E-70 | 274.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75861.t1 | Q9SQK3 | 37.7 | 146 | 81 | 2 | 40 | 177 | 38 | 181 | 4.9e-11 | 70.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75861.t1 | G7IGK4 | 90.0 | 309 | 31 | 0 | 1 | 309 | 1 | 309 | 4.0e-70 | 274.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene75861 | 0.815819 | 7.60E-52 | -1.69E-46 |
| MS.gene049150 | MS.gene75861 | 0.828508 | 8.65E-55 | -1.69E-46 |
| MS.gene049151 | MS.gene75861 | 0.818813 | 1.61E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene75861 | 0.831092 | 2.03E-55 | -1.69E-46 |
| MS.gene049260 | MS.gene75861 | 0.828276 | 9.83E-55 | -1.69E-46 |
| MS.gene049284 | MS.gene75861 | 0.804007 | 2.66E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene75861 | 0.804321 | 2.29E-49 | -1.69E-46 |
| MS.gene04933 | MS.gene75861 | 0.805577 | 1.25E-49 | -1.69E-46 |
| MS.gene049346 | MS.gene75861 | 0.809121 | 2.21E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene75861 | 0.849655 | 2.81E-60 | -1.69E-46 |
| MS.gene049356 | MS.gene75861 | 0.805884 | 1.08E-49 | -1.69E-46 |
| MS.gene049599 | MS.gene75861 | -0.810311 | 1.23E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene75861 | 0.8954 | 9.94E-76 | -1.69E-46 |
| MS.gene049910 | MS.gene75861 | 0.826196 | 3.10E-54 | -1.69E-46 |
| MS.gene049915 | MS.gene75861 | 0.803339 | 3.65E-49 | -1.69E-46 |
| MS.gene050099 | MS.gene75861 | 0.840387 | 8.97E-58 | -1.69E-46 |
| MS.gene050128 | MS.gene75861 | 0.842377 | 2.68E-58 | -1.69E-46 |
| MS.gene050226 | MS.gene75861 | 0.807874 | 4.08E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene75861 | 0.810669 | 1.03E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene75861 | 0.889051 | 3.42E-73 | -1.69E-46 |
| MS.gene050397 | MS.gene75861 | 0.859846 | 3.12E-63 | -1.69E-46 |
| MS.gene050404 | MS.gene75861 | 0.805456 | 1.32E-49 | -1.69E-46 |
| MS.gene050406 | MS.gene75861 | 0.813401 | 2.61E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene75861 | -0.826233 | 3.03E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene75861 | 0.851464 | 8.73E-61 | -1.69E-46 |
| MS.gene050529 | MS.gene75861 | 0.864064 | 1.59E-64 | -1.69E-46 |
| MS.gene050558 | MS.gene75861 | 0.815844 | 7.51E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene75861 | -0.827201 | 1.78E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene75861 | 0.863754 | 1.99E-64 | -1.69E-46 |
| MS.gene050670 | MS.gene75861 | 0.814925 | 1.20E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene75861 | 0.823564 | 1.29E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene75861 | 0.838087 | 3.54E-57 | -1.69E-46 |
| MS.gene05119 | MS.gene75861 | -0.803759 | 2.99E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene75861 | 0.83486 | 2.35E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene75861 | 0.805492 | 1.30E-49 | -1.69E-46 |
| MS.gene051662 | MS.gene75861 | 0.813309 | 2.73E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene75861 | 0.825733 | 3.99E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene75861 | 0.892443 | 1.58E-74 | -1.69E-46 |
| MS.gene051983 | MS.gene75861 | 0.855239 | 7.21E-62 | -1.69E-46 |
| MS.gene052011 | MS.gene75861 | -0.835416 | 1.70E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene75861 | 0.879787 | 9.37E-70 | -1.69E-46 |
| MS.gene052078 | MS.gene75861 | 0.873256 | 1.69E-67 | -1.69E-46 |
| MS.gene052178 | MS.gene75861 | 0.876413 | 1.42E-68 | -1.69E-46 |
| MS.gene052188 | MS.gene75861 | 0.877499 | 5.99E-69 | -1.69E-46 |
| MS.gene052207 | MS.gene75861 | 0.818045 | 2.41E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene75861 | 0.860743 | 1.67E-63 | -1.69E-46 |
| MS.gene052255 | MS.gene75861 | 0.80631 | 8.75E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene75861 | 0.861449 | 1.02E-63 | -1.69E-46 |
| MS.gene052340 | MS.gene75861 | 0.888083 | 8.09E-73 | -1.69E-46 |
| MS.gene05316 | MS.gene75861 | 0.817635 | 2.98E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene75861 | 0.832637 | 8.44E-56 | -1.69E-46 |
| MS.gene053557 | MS.gene75861 | 0.865424 | 5.96E-65 | -1.69E-46 |
| MS.gene053836 | MS.gene75861 | 0.891163 | 5.11E-74 | -1.69E-46 |
| MS.gene053907 | MS.gene75861 | 0.81224 | 4.68E-51 | -1.69E-46 |
| MS.gene053928 | MS.gene75861 | 0.838005 | 3.72E-57 | -1.69E-46 |
| MS.gene054010 | MS.gene75861 | 0.825784 | 3.88E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene75861 | 0.838318 | 3.09E-57 | -1.69E-46 |
| MS.gene054012 | MS.gene75861 | 0.835461 | 1.66E-56 | -1.69E-46 |
| MS.gene054013 | MS.gene75861 | 0.831888 | 1.29E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene75861 | 0.834267 | 3.31E-56 | -1.69E-46 |
| MS.gene054183 | MS.gene75861 | 0.83545 | 1.67E-56 | -1.69E-46 |
| MS.gene054184 | MS.gene75861 | 0.827889 | 1.22E-54 | -1.69E-46 |
| MS.gene054185 | MS.gene75861 | 0.828546 | 8.47E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene75861 | 0.853966 | 1.68E-61 | -1.69E-46 |
| MS.gene054473 | MS.gene75861 | 0.839035 | 2.02E-57 | -1.69E-46 |
| MS.gene054542 | MS.gene75861 | 0.835266 | 1.85E-56 | -1.69E-46 |
| MS.gene054556 | MS.gene75861 | 0.800601 | 1.34E-48 | -1.69E-46 |
| MS.gene05455 | MS.gene75861 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene75861 | 0.801807 | 7.56E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene75861 | 0.825648 | 4.18E-54 | -1.69E-46 |
| MS.gene054942 | MS.gene75861 | 0.813265 | 2.79E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene75861 | 0.824809 | 6.60E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene75861 | 0.840448 | 8.64E-58 | -1.69E-46 |
| MS.gene055277 | MS.gene75861 | 0.866368 | 3.00E-65 | -1.69E-46 |
| MS.gene055390 | MS.gene75861 | 0.839096 | 1.94E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene75861 | 0.88085 | 3.91E-70 | -1.69E-46 |
| MS.gene055428 | MS.gene75861 | 0.865181 | 7.11E-65 | -1.69E-46 |
| MS.gene05553 | MS.gene75861 | 0.841342 | 5.04E-58 | -1.69E-46 |
| MS.gene055604 | MS.gene75861 | 0.87657 | 1.26E-68 | -1.69E-46 |
| MS.gene055712 | MS.gene75861 | 0.807593 | 4.69E-50 | -1.69E-46 |
| MS.gene055859 | MS.gene75861 | 0.807291 | 5.43E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene75861 | 0.828552 | 8.44E-55 | -1.69E-46 |
| MS.gene056314 | MS.gene75861 | 0.822224 | 2.66E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene75861 | 0.829211 | 5.84E-55 | -1.69E-46 |
| MS.gene056410 | MS.gene75861 | 0.81728 | 3.58E-52 | -1.69E-46 |
| MS.gene056612 | MS.gene75861 | 0.87685 | 1.01E-68 | -1.69E-46 |
| MS.gene056659 | MS.gene75861 | 0.838999 | 2.06E-57 | -1.69E-46 |
| MS.gene056723 | MS.gene75861 | 0.801433 | 9.03E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene75861 | 0.815849 | 7.49E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene75861 | -0.825613 | 4.26E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene75861 | 0.830761 | 2.45E-55 | -1.69E-46 |
| MS.gene056979 | MS.gene75861 | 0.843944 | 1.03E-58 | -1.69E-46 |
| MS.gene05702 | MS.gene75861 | 0.848395 | 6.30E-60 | -1.69E-46 |
| MS.gene057121 | MS.gene75861 | 0.849671 | 2.78E-60 | -1.69E-46 |
| MS.gene057245 | MS.gene75861 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene75861 | 0.807149 | 5.82E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene75861 | 0.827989 | 1.15E-54 | -1.69E-46 |
| MS.gene057439 | MS.gene75861 | 0.846399 | 2.23E-59 | -1.69E-46 |
| MS.gene057448 | MS.gene75861 | 0.835498 | 1.62E-56 | -1.69E-46 |
| MS.gene057449 | MS.gene75861 | 0.813646 | 2.30E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene75861 | 0.836918 | 7.06E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene75861 | 0.81707 | 3.99E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene75861 | 0.82955 | 4.84E-55 | -1.69E-46 |
| MS.gene057754 | MS.gene75861 | 0.803177 | 3.95E-49 | -1.69E-46 |
| MS.gene057796 | MS.gene75861 | 0.821268 | 4.42E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene75861 | 0.825294 | 5.07E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene75861 | 0.890595 | 8.55E-74 | -1.69E-46 |
| MS.gene058082 | MS.gene75861 | 0.830561 | 2.74E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene75861 | 0.918019 | 2.61E-86 | -1.69E-46 |
| MS.gene058142 | MS.gene75861 | 0.870125 | 1.85E-66 | -1.69E-46 |
| MS.gene058233 | MS.gene75861 | 0.805893 | 1.07E-49 | -1.69E-46 |
| MS.gene058276 | MS.gene75861 | 0.855194 | 7.43E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene75861 | 0.80455 | 2.05E-49 | -1.69E-46 |
| MS.gene058365 | MS.gene75861 | 0.814183 | 1.75E-51 | -1.69E-46 |
| MS.gene05842 | MS.gene75861 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene058660 | MS.gene75861 | 0.841964 | 3.45E-58 | -1.69E-46 |
| MS.gene058710 | MS.gene75861 | 0.847619 | 1.03E-59 | -1.69E-46 |
| MS.gene058749 | MS.gene75861 | 0.827488 | 1.52E-54 | -1.69E-46 |
| MS.gene058787 | MS.gene75861 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene75861 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene75861 | 0.847897 | 8.64E-60 | -1.69E-46 |
| MS.gene05886 | MS.gene75861 | 0.82582 | 3.81E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene75861 | 0.823357 | 1.45E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene75861 | 0.885712 | 6.42E-72 | -1.69E-46 |
| MS.gene059285 | MS.gene75861 | 0.854282 | 1.37E-61 | -1.69E-46 |
| MS.gene059294 | MS.gene75861 | 0.845192 | 4.73E-59 | -1.69E-46 |
| MS.gene059420 | MS.gene75861 | 0.835253 | 1.87E-56 | -1.69E-46 |
| MS.gene059518 | MS.gene75861 | 0.871319 | 7.48E-67 | -1.69E-46 |
| MS.gene059597 | MS.gene75861 | 0.873041 | 2.00E-67 | -1.69E-46 |
| MS.gene05959 | MS.gene75861 | 0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene75861 | 0.840491 | 8.42E-58 | -1.69E-46 |
| MS.gene059688 | MS.gene75861 | 0.832555 | 8.84E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene75861 | 0.845749 | 3.34E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene75861 | 0.844799 | 6.04E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene75861 | 0.901641 | 2.18E-78 | -1.69E-46 |
| MS.gene059894 | MS.gene75861 | 0.880411 | 5.61E-70 | -1.69E-46 |
| MS.gene059899 | MS.gene75861 | 0.81913 | 1.37E-52 | -1.69E-46 |
| MS.gene059974 | MS.gene75861 | 0.812565 | 3.98E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene75861 | 0.857101 | 2.05E-62 | -1.69E-46 |
| MS.gene060403 | MS.gene75861 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene060407 | MS.gene75861 | 0.827532 | 1.48E-54 | -1.69E-46 |
| MS.gene060476 | MS.gene75861 | 0.820767 | 5.76E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene75861 | 0.83067 | 2.58E-55 | -1.69E-46 |
| MS.gene06090 | MS.gene75861 | 0.813226 | 2.85E-51 | -1.69E-46 |
| MS.gene060986 | MS.gene75861 | 0.815476 | 9.06E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene75861 | 0.892718 | 1.23E-74 | -1.69E-46 |
| MS.gene061051 | MS.gene75861 | -0.821148 | 4.71E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene75861 | 0.836535 | 8.84E-57 | -1.69E-46 |
| MS.gene061159 | MS.gene75861 | 0.802158 | 6.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75861.t1 | MTR_2g048680 | 92.880 | 309 | 22 | 0 | 1 | 309 | 1 | 309 | 0.0 | 595 |
| MS.gene75861.t1 | MTR_2g048680 | 93.976 | 166 | 10 | 0 | 144 | 309 | 64 | 229 | 8.77e-115 | 331 |
| MS.gene75861.t1 | MTR_5g022050 | 44.712 | 208 | 114 | 1 | 97 | 304 | 209 | 415 | 3.83e-55 | 185 |
| MS.gene75861.t1 | MTR_5g023090 | 48.235 | 170 | 88 | 0 | 138 | 307 | 283 | 452 | 1.56e-52 | 179 |
| MS.gene75861.t1 | MTR_5g022050 | 42.953 | 149 | 84 | 1 | 97 | 245 | 219 | 366 | 7.86e-31 | 119 |
| MS.gene75861.t1 | MTR_5g043640 | 36.232 | 138 | 88 | 0 | 147 | 284 | 89 | 226 | 1.81e-21 | 91.7 |
| MS.gene75861.t1 | MTR_5g043640 | 34.454 | 119 | 75 | 3 | 178 | 294 | 87 | 204 | 8.16e-15 | 73.2 |
| MS.gene75861.t1 | MTR_3g491870 | 39.091 | 110 | 61 | 3 | 193 | 298 | 246 | 353 | 2.00e-14 | 73.2 |
| MS.gene75861.t1 | MTR_6g027840 | 28.652 | 178 | 124 | 3 | 126 | 302 | 189 | 364 | 1.62e-12 | 68.2 |
| MS.gene75861.t1 | MTR_5g026800 | 29.139 | 151 | 104 | 2 | 139 | 288 | 4 | 152 | 1.10e-11 | 64.3 |
| MS.gene75861.t1 | MTR_2g096760 | 30.719 | 153 | 93 | 2 | 132 | 271 | 30 | 182 | 2.39e-11 | 64.3 |
| MS.gene75861.t1 | MTR_1g062770 | 34.167 | 120 | 72 | 1 | 174 | 286 | 64 | 183 | 2.74e-11 | 62.4 |
| MS.gene75861.t1 | MTR_8g056020 | 31.481 | 108 | 74 | 0 | 164 | 271 | 245 | 352 | 3.13e-11 | 63.9 |
| MS.gene75861.t1 | MTR_4g116160 | 28.177 | 181 | 123 | 3 | 105 | 284 | 33 | 207 | 6.48e-11 | 63.5 |
| MS.gene75861.t1 | MTR_5g026550 | 30.469 | 128 | 83 | 2 | 181 | 302 | 29 | 156 | 7.36e-11 | 60.5 |
| MS.gene75861.t1 | MTR_1g112830 | 31.667 | 120 | 78 | 2 | 167 | 282 | 221 | 340 | 9.96e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75861.t1 | AT5G40160 | 57.246 | 276 | 108 | 2 | 40 | 307 | 38 | 311 | 2.70e-106 | 312 |
| MS.gene75861.t1 | AT5G40160 | 54.962 | 262 | 104 | 3 | 40 | 293 | 38 | 293 | 7.90e-90 | 270 |
| MS.gene75861.t1 | AT5G66055 | 44.221 | 199 | 108 | 2 | 111 | 307 | 222 | 419 | 3.92e-51 | 174 |
| MS.gene75861.t1 | AT5G66055 | 42.446 | 139 | 77 | 2 | 111 | 247 | 222 | 359 | 6.00e-28 | 111 |
| MS.gene75861.t1 | AT2G03430 | 34.783 | 138 | 90 | 0 | 147 | 284 | 82 | 219 | 2.78e-18 | 82.8 |
| MS.gene75861.t1 | AT2G03430 | 28.814 | 177 | 119 | 4 | 130 | 301 | 29 | 203 | 5.25e-12 | 65.1 |
| MS.gene75861.t1 | AT2G25600 | 42.857 | 84 | 48 | 0 | 194 | 277 | 557 | 640 | 1.42e-13 | 71.6 |
| MS.gene75861.t1 | AT4G27780 | 37.113 | 97 | 58 | 1 | 193 | 286 | 242 | 338 | 5.26e-13 | 69.3 |
| MS.gene75861.t1 | AT5G53470 | 36.082 | 97 | 59 | 1 | 193 | 286 | 227 | 323 | 2.04e-12 | 67.4 |
| MS.gene75861.t1 | AT2G14255 | 32.624 | 141 | 92 | 2 | 150 | 287 | 93 | 233 | 3.51e-12 | 67.4 |
| MS.gene75861.t1 | AT5G13300 | 38.889 | 90 | 53 | 1 | 200 | 287 | 713 | 802 | 1.80e-11 | 65.5 |
| MS.gene75861.t1 | AT5G20350 | 28.649 | 185 | 123 | 4 | 102 | 284 | 25 | 202 | 3.91e-11 | 64.3 |
| MS.gene75861.t1 | AT3G09890 | 35.514 | 107 | 62 | 1 | 183 | 282 | 75 | 181 | 5.67e-11 | 61.6 |
Find 55 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAATATAACTCCTAATT+TGG | 0.193363 | 2.1:-43219481 | MS.gene75861:CDS |
| TTCTACCACTAACTCCAAAT+TGG | 0.221787 | 2.1:-43220482 | MS.gene75861:CDS |
| TGCAGTATTTCTAGTTCTTC+TGG | 0.234735 | 2.1:+43219504 | None:intergenic |
| CCCAGGTTCCATGTTCTTGT+TGG | 0.250535 | 2.1:+43220329 | None:intergenic |
| GTGGAAACCGGCTCCCAATT+TGG | 0.255625 | 2.1:+43220468 | None:intergenic |
| TTGGAGTTAGTGGTAGAAAA+AGG | 0.292511 | 2.1:+43220487 | None:intergenic |
| GCACTTCATAAGGCGGTTAT+AGG | 0.299638 | 2.1:-43219174 | MS.gene75861:CDS |
| TGATATTGATTTCGTCAATA+AGG | 0.337108 | 2.1:-43219287 | MS.gene75861:intron |
| GAAAACATATATGGATTGTT+TGG | 0.341709 | 2.1:-43220542 | None:intergenic |
| CCAGGTTCCATGTTCTTGTT+GGG | 0.349630 | 2.1:+43220330 | None:intergenic |
| AGATAGATCGATAGAAAATA+AGG | 0.384701 | 2.1:-43218729 | MS.gene75861:intron |
| GGCTCCCAATTTGGAGTTAG+TGG | 0.384780 | 2.1:+43220477 | None:intergenic |
| TCACTGTCACTACGAATATC+TGG | 0.387326 | 2.1:+43220301 | None:intergenic |
| CTTGCTAGATTAATTAAGAT+AGG | 0.413079 | 2.1:-43218072 | MS.gene75861:CDS |
| TCTACCACTAACTCCAAATT+GGG | 0.430028 | 2.1:-43220481 | MS.gene75861:CDS |
| TTTGAACGGCAACATGCAAT+GGG | 0.445663 | 2.1:+43218795 | None:intergenic |
| TGGAGCCCGCTGCACTCTCT+TGG | 0.448549 | 2.1:-43219358 | MS.gene75861:CDS |
| ATAAATTTATTAGAAAGAAC+AGG | 0.449639 | 2.1:+43220511 | None:intergenic |
| CCCAACAAGAACATGGAACC+TGG | 0.455702 | 2.1:-43220330 | MS.gene75861:CDS |
| CTGGATATAAGTATATGTTA+TGG | 0.458251 | 2.1:-43218117 | MS.gene75861:CDS |
| CTTTGAACGGCAACATGCAA+TGG | 0.462361 | 2.1:+43218794 | None:intergenic |
| TCTGTATATTCTGTGGAAAC+CGG | 0.463667 | 2.1:+43220456 | None:intergenic |
| AGGTCTCACTGCACTTCATA+AGG | 0.467266 | 2.1:-43219184 | MS.gene75861:CDS |
| TTGCACCTTTCCGTAAAAGA+TGG | 0.475406 | 2.1:+43219130 | None:intergenic |
| AATTTATCCACACCTTATCC+TGG | 0.484529 | 2.1:+43219097 | None:intergenic |
| AGAGACGCAGGACGAGTATG+AGG | 0.486038 | 2.1:-43220212 | MS.gene75861:CDS |
| TGCATGTTGCCGTTCAAAGC+CGG | 0.486087 | 2.1:-43218790 | MS.gene75861:CDS |
| TATCGATCTATCTGCGCCAT+TGG | 0.492748 | 2.1:+43218739 | None:intergenic |
| GACGAAGAAGATAAAAGCCT+TGG | 0.496557 | 2.1:-43220265 | MS.gene75861:CDS |
| ACGAATATCTGGTTCTTCCC+AGG | 0.501030 | 2.1:+43220312 | None:intergenic |
| CATTATAGAACTCAGTTGCC+TGG | 0.505053 | 2.1:+43218048 | None:intergenic |
| ATCTCTATTCCGGCTTTGAA+CGG | 0.506075 | 2.1:+43218781 | None:intergenic |
| TAATAATCTCTCAGGAAGGT+TGG | 0.511156 | 2.1:-43218820 | MS.gene75861:intron |
| AAGTCCTCATGTCCAGGATA+AGG | 0.522498 | 2.1:-43219109 | MS.gene75861:intron |
| CTTCATTATGCAGTTCAAGT+TGG | 0.528881 | 2.1:-43218987 | MS.gene75861:CDS |
| AGGTGCAAGTCCTCATGTCC+AGG | 0.541101 | 2.1:-43219115 | MS.gene75861:CDS |
| AGATTAATTAAGATAGGTCC+AGG | 0.543202 | 2.1:-43218066 | MS.gene75861:CDS |
| TTGCAAACCCAACAAGAACA+TGG | 0.559818 | 2.1:-43220337 | MS.gene75861:CDS |
| TATGAGGAGCGTATTAAGAA+AGG | 0.561332 | 2.1:-43220196 | MS.gene75861:intron |
| ATGGACAAGCTTCTTGAAAG+TGG | 0.562294 | 2.1:-43219313 | MS.gene75861:CDS |
| ATAAGCCAAGAGAGTGCAGC+GGG | 0.573360 | 2.1:+43219353 | None:intergenic |
| TCAGGATGGGAAAACAGCAC+TGG | 0.573451 | 2.1:-43218136 | MS.gene75861:intron |
| GCAGGAAGAGACAGAGACGC+AGG | 0.575387 | 2.1:-43220224 | MS.gene75861:CDS |
| ACTAACTCCAAATTGGGAGC+CGG | 0.582328 | 2.1:-43220475 | MS.gene75861:CDS |
| ACTTGAACTGCATAATGAAG+TGG | 0.583827 | 2.1:+43218990 | None:intergenic |
| ATAAGGAGAATTGCGAAGGT+CGG | 0.595160 | 2.1:-43220399 | MS.gene75861:CDS |
| CTATCTTAATTAATCTAGCA+AGG | 0.596792 | 2.1:+43218073 | None:intergenic |
| GATAAGCCAAGAGAGTGCAG+CGG | 0.632445 | 2.1:+43219352 | None:intergenic |
| CCAACAAGAACATGGAACCT+GGG | 0.641739 | 2.1:-43220329 | MS.gene75861:CDS |
| CACACCTTATCCTGGACATG+AGG | 0.646294 | 2.1:+43219105 | None:intergenic |
| GTTGCAATCAAATCAAGCAG+AGG | 0.658547 | 2.1:-43220370 | MS.gene75861:CDS |
| TTGTACGTCTGTATATTCTG+TGG | 0.683826 | 2.1:+43220449 | None:intergenic |
| TCTCACTGCACTTCATAAGG+CGG | 0.692716 | 2.1:-43219181 | MS.gene75861:CDS |
| ATACAATGTTGATGTCAATG+TGG | 0.742113 | 2.1:-43218934 | MS.gene75861:CDS |
| TTGAACGGCAACATGCAATG+GGG | 0.746359 | 2.1:+43218796 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTATTTATTTAT+TGG | + | chr2.1:43218966-43218985 | None:intergenic | 0.0% |
| !! | TAAAAAAATATATTGAATGA+TGG | - | chr2.1:43218975-43218994 | MS.gene75861:CDS | 10.0% |
| !! | TGTTTATATATTTATTGATA+TGG | - | chr2.1:43219563-43219582 | MS.gene75861:intron | 10.0% |
| !! | AGAAAAAAAATATTAGATGA+GGG | - | chr2.1:43219991-43220010 | MS.gene75861:intron | 15.0% |
| !! | ATAAATTTATTAGAAAGAAC+AGG | + | chr2.1:43218083-43218102 | None:intergenic | 15.0% |
| !! | TAGAAAAAAAATATTAGATG+AGG | - | chr2.1:43219990-43220009 | MS.gene75861:intron | 15.0% |
| !!! | TAACAAAAGTATCAATTTAT+AGG | + | chr2.1:43219041-43219060 | None:intergenic | 15.0% |
| !!! | TCAGTCTAAATTTTAATAAT+TGG | - | chr2.1:43218623-43218642 | MS.gene75861:intron | 15.0% |
| !!! | TTTTGATTGTCTAATTAATT+CGG | + | chr2.1:43220031-43220050 | None:intergenic | 15.0% |
| !! | AGTCAATTATAAACTCAAAT+TGG | - | chr2.1:43220363-43220382 | MS.gene75861:CDS | 20.0% |
| !! | ATAAGATATGACAAAAAAGA+AGG | - | chr2.1:43218815-43218834 | MS.gene75861:intron | 20.0% |
| !! | TATATATTTATTGATATGGC+AGG | - | chr2.1:43219567-43219586 | MS.gene75861:intron | 20.0% |
| !! | TCAATAATTAATATGCAACA+TGG | - | chr2.1:43219913-43219932 | MS.gene75861:intron | 20.0% |
| !! | TTTACTATTAATAATCTCTC+AGG | - | chr2.1:43219763-43219782 | MS.gene75861:intron | 20.0% |
| !! | TTTGTACTTTATACTTTCAA+TGG | - | chr2.1:43218903-43218922 | MS.gene75861:intron | 20.0% |
| !!! | AATTTGAGTTTATAATTGAC+TGG | + | chr2.1:43220364-43220383 | None:intergenic | 20.0% |
| !!! | ACTTATACATACACTTTTAT+AGG | - | chr2.1:43220273-43220292 | MS.gene75861:CDS | 20.0% |
| !!! | ATCATTTCAGATTTTTAGTA+TGG | - | chr2.1:43219259-43219278 | MS.gene75861:intron | 20.0% |
| !!! | GATGATATTTTTTCCAAATT+AGG | + | chr2.1:43219126-43219145 | None:intergenic | 20.0% |
| ! | ACAGAATATAACTCCTAATT+TGG | - | chr2.1:43219110-43219129 | MS.gene75861:CDS | 25.0% |
| ! | AGATAGATCGATAGAAAATA+AGG | - | chr2.1:43219862-43219881 | MS.gene75861:intron | 25.0% |
| ! | AGGTTTACAGTTTATCATAT+AGG | - | chr2.1:43218686-43218705 | MS.gene75861:intron | 25.0% |
| ! | ATGTCATGATATTGAAAACT+GGG | - | chr2.1:43218460-43218479 | MS.gene75861:intron | 25.0% |
| ! | ATTGGAGATATTCAACAATT+AGG | + | chr2.1:43218948-43218967 | None:intergenic | 25.0% |
| ! | CTAGTCGTAAATAAGATAAT+TGG | - | chr2.1:43219374-43219393 | MS.gene75861:intron | 25.0% |
| ! | CTATCTTAATTAATCTAGCA+AGG | + | chr2.1:43220521-43220540 | None:intergenic | 25.0% |
| ! | CTGGATATAAGTATATGTTA+TGG | - | chr2.1:43220474-43220493 | MS.gene75861:CDS | 25.0% |
| ! | CTTGCTAGATTAATTAAGAT+AGG | - | chr2.1:43220519-43220538 | MS.gene75861:CDS | 25.0% |
| ! | TAAAGTACAAACACCAAAAA+AGG | + | chr2.1:43218894-43218913 | None:intergenic | 25.0% |
| ! | TAAGAGAAAAAACACAACAA+GGG | + | chr2.1:43218734-43218753 | None:intergenic | 25.0% |
| ! | TAATAATTGGTCAGAAGTTT+GGG | - | chr2.1:43218636-43218655 | MS.gene75861:intron | 25.0% |
| ! | TAATAGTTCAGTTAATCAGT+TGG | - | chr2.1:43220057-43220076 | MS.gene75861:intron | 25.0% |
| ! | TATGTCATGATATTGAAAAC+TGG | - | chr2.1:43218459-43218478 | MS.gene75861:intron | 25.0% |
| ! | TTAAGAGAAAAAACACAACA+AGG | + | chr2.1:43218735-43218754 | None:intergenic | 25.0% |
| ! | TTAATAATTGGTCAGAAGTT+TGG | - | chr2.1:43218635-43218654 | MS.gene75861:intron | 25.0% |
| ! | TTTCATATTAGTTGCAAACT+AGG | + | chr2.1:43220211-43220230 | None:intergenic | 25.0% |
| ! | TTTCATGTATTCAGGAAAAA+TGG | - | chr2.1:43219213-43219232 | MS.gene75861:intron | 25.0% |
| !! | AAACCTTTTAATCCAAGTAT+AGG | + | chr2.1:43218672-43218691 | None:intergenic | 25.0% |
| !! | AACCTTTTAATCCAAGTATA+GGG | + | chr2.1:43218671-43218690 | None:intergenic | 25.0% |
| !! | ATTACGTCTCTCTTTTTATA+AGG | - | chr2.1:43218175-43218194 | MS.gene75861:intron | 25.0% |
| !! | CAATTATCTTATTTACGACT+AGG | + | chr2.1:43219376-43219395 | None:intergenic | 25.0% |
| !! | GTTTTCAATATCATGACATA+TGG | + | chr2.1:43218459-43218478 | None:intergenic | 25.0% |
| !!! | AATGGTTTTAAGCTTTGATA+AGG | - | chr2.1:43218921-43218940 | MS.gene75861:intron | 25.0% |
| !!! | TAAAGCAGTATTTTGAAAAC+TGG | + | chr2.1:43218862-43218881 | None:intergenic | 25.0% |
| !!! | TGATATTGATTTCGTCAATA+AGG | - | chr2.1:43219304-43219323 | MS.gene75861:CDS | 25.0% |
| !!! | TTTACACATTTCTCCTTTTT+TGG | - | chr2.1:43218878-43218897 | MS.gene75861:intron | 25.0% |
| AAGAAGGTTTACCAATTTCA+TGG | - | chr2.1:43218831-43218850 | MS.gene75861:intron | 30.0% | |
| AATAAGATAATTGGATCGAC+AGG | - | chr2.1:43219383-43219402 | MS.gene75861:intron | 30.0% | |
| AGATTAATTAAGATAGGTCC+AGG | - | chr2.1:43220525-43220544 | MS.gene75861:CDS | 30.0% | |
| AGCCTTGGATTTAAAAATGA+TGG | - | chr2.1:43218341-43218360 | MS.gene75861:intron | 30.0% | |
| ATACAATGTTGATGTCAATG+TGG | - | chr2.1:43219657-43219676 | MS.gene75861:intron | 30.0% | |
| CCTTGGATTTAAAAATGATG+GGG | - | chr2.1:43218343-43218362 | MS.gene75861:intron | 30.0% | |
| CTATTAATAATCTCTCAGGA+AGG | - | chr2.1:43219767-43219786 | MS.gene75861:intron | 30.0% | |
| CTGATCAATGATCATGATTA+TGG | + | chr2.1:43218587-43218606 | None:intergenic | 30.0% | |
| GCCTTGGATTTAAAAATGAT+GGG | - | chr2.1:43218342-43218361 | MS.gene75861:intron | 30.0% | |
| TATTTATTGATATGGCAGGA+TGG | - | chr2.1:43219571-43219590 | MS.gene75861:intron | 30.0% | |
| TTAATTATTGAGCTCTGTAG+TGG | + | chr2.1:43219904-43219923 | None:intergenic | 30.0% | |
| TTGCAAACTAGGTATTATGT+GGG | + | chr2.1:43220200-43220219 | None:intergenic | 30.0% | |
| ! | AGAGAGACGTAATTTTTGTT+TGG | + | chr2.1:43218168-43218187 | None:intergenic | 30.0% |
| ! | CTGTTATAAGCCATCTTTTA+CGG | - | chr2.1:43219451-43219470 | MS.gene75861:intron | 30.0% |
| ! | TCATTGATTGGTTATGTTTC+AGG | - | chr2.1:43220437-43220456 | MS.gene75861:CDS | 30.0% |
| ! | TGATACTTTTGTTAATGCAG+AGG | - | chr2.1:43219047-43219066 | MS.gene75861:intron | 30.0% |
| ! | TTTTATAAGGAGAATTGCGA+AGG | - | chr2.1:43218188-43218207 | MS.gene75861:intron | 30.0% |
| ! | TTTTCGCTATATCTCTATTC+CGG | + | chr2.1:43219823-43219842 | None:intergenic | 30.0% |
| !! | TCATGTTACTTTGTCTCTAT+TGG | - | chr2.1:43218430-43218449 | MS.gene75861:intron | 30.0% |
| !!! | CAGTTTTACTTGCTGTATAT+GGG | - | chr2.1:43219737-43219756 | MS.gene75861:intron | 30.0% |
| !!! | GCTCTTATTTTCATGTATTC+AGG | - | chr2.1:43219205-43219224 | MS.gene75861:intron | 30.0% |
| !!! | TCAGTTTTACTTGCTGTATA+TGG | - | chr2.1:43219736-43219755 | MS.gene75861:intron | 30.0% |
| AAAAATATTAGATGAGGGCC+AGG | - | chr2.1:43219996-43220015 | MS.gene75861:intron | 35.0% | |
| AATCATACATGAGTATGAGC+TGG | - | chr2.1:43218538-43218557 | MS.gene75861:intron | 35.0% | |
| AATTTATCCACACCTTATCC+TGG | + | chr2.1:43219497-43219516 | None:intergenic | 35.0% | |
| ACCTAGAACTTGTATCAGAT+TGG | - | chr2.1:43218505-43218524 | MS.gene75861:intron | 35.0% | |
| ACTTGAACTGCATAATGAAG+TGG | + | chr2.1:43219604-43219623 | None:intergenic | 35.0% | |
| CTCCCTATACTTGGATTAAA+AGG | - | chr2.1:43218666-43218685 | MS.gene75861:intron | 35.0% | |
| CTTCATTATGCAGTTCAAGT+TGG | - | chr2.1:43219604-43219623 | MS.gene75861:intron | 35.0% | |
| GTCAACAGCATATGAACATA+AGG | + | chr2.1:43219520-43219539 | None:intergenic | 35.0% | |
| GTTGCAAACTAGGTATTATG+TGG | + | chr2.1:43220201-43220220 | None:intergenic | 35.0% | |
| TAAGATACGAGTGTCTAACA+AGG | + | chr2.1:43218784-43218803 | None:intergenic | 35.0% | |
| TAATAATCTCTCAGGAAGGT+TGG | - | chr2.1:43219771-43219790 | MS.gene75861:intron | 35.0% | |
| TCCAATCTGATACAAGTTCT+AGG | + | chr2.1:43218509-43218528 | None:intergenic | 35.0% | |
| TCTAATTAATTCGGCCCATT+GGG | + | chr2.1:43220022-43220041 | None:intergenic | 35.0% | |
| TCTACCACTAACTCCAAATT+GGG | - | chr2.1:43218110-43218129 | MS.gene75861:CDS | 35.0% | |
| TCTGTATATTCTGTGGAAAC+CGG | + | chr2.1:43218138-43218157 | None:intergenic | 35.0% | |
| TGCAAACTAGGTATTATGTG+GGG | + | chr2.1:43220199-43220218 | None:intergenic | 35.0% | |
| TTCTACCACTAACTCCAAAT+TGG | - | chr2.1:43218109-43218128 | MS.gene75861:CDS | 35.0% | |
| TTGGAGTTAGTGGTAGAAAA+AGG | + | chr2.1:43218107-43218126 | None:intergenic | 35.0% | |
| TTGTACGTCTGTATATTCTG+TGG | + | chr2.1:43218145-43218164 | None:intergenic | 35.0% | |
| ! | ATAAGCCATCTTTTACGGAA+AGG | - | chr2.1:43219456-43219475 | MS.gene75861:intron | 35.0% |
| ! | ATTTAAAAATGATGGGGAGC+AGG | - | chr2.1:43218349-43218368 | MS.gene75861:intron | 35.0% |
| ! | GATTGGTTATGTTTCAGGAT+GGG | - | chr2.1:43220442-43220461 | MS.gene75861:CDS | 35.0% |
| ! | GCGAAAATTTTGTTAGCCAA+TGG | - | chr2.1:43219836-43219855 | MS.gene75861:intron | 35.0% |
| ! | TATGAGGAGCGTATTAAGAA+AGG | - | chr2.1:43218395-43218414 | MS.gene75861:intron | 35.0% |
| ! | TCAGTACAGAACAGTTTTTC+AGG | - | chr2.1:43220091-43220110 | MS.gene75861:intron | 35.0% |
| ! | TGATTGGTTATGTTTCAGGA+TGG | - | chr2.1:43220441-43220460 | MS.gene75861:CDS | 35.0% |
| !! | CCCCATCATTTTTAAATCCA+AGG | + | chr2.1:43218346-43218365 | None:intergenic | 35.0% |
| !! | GCAGTATTTTGAAAACTGGA+TGG | + | chr2.1:43218858-43218877 | None:intergenic | 35.0% |
| !! | TGCAGTATTTCTAGTTCTTC+TGG | + | chr2.1:43219090-43219109 | None:intergenic | 35.0% |
| !!! | GAGTTGTTCTTTTTTGCTTG+CGG | - | chr2.1:43220407-43220426 | MS.gene75861:CDS | 35.0% |
| !!! | TACAGAACAGTTTTTCAGGT+AGG | - | chr2.1:43220095-43220114 | MS.gene75861:intron | 35.0% |
| AACTGGATGGACCATGAAAT+TGG | + | chr2.1:43218845-43218864 | None:intergenic | 40.0% | |
| AGAAAAAACACAACAAGGGC+TGG | + | chr2.1:43218730-43218749 | None:intergenic | 40.0% | |
| AGATAATTGGATCGACAGGA+AGG | - | chr2.1:43219387-43219406 | MS.gene75861:intron | 40.0% | |
| ATAAGGAGAATTGCGAAGGT+CGG | - | chr2.1:43218192-43218211 | MS.gene75861:intron | 40.0% | |
| ATGGACAAGCTTCTTGAAAG+TGG | - | chr2.1:43219278-43219297 | MS.gene75861:intron | 40.0% | |
| CAAATGCAGATAAGAACGCA+AGG | + | chr2.1:43219184-43219203 | None:intergenic | 40.0% | |
| CATGATATTGAAAACTGGGC+CGG | - | chr2.1:43218464-43218483 | MS.gene75861:intron | 40.0% | |
| CCAGCTCATACTCATGATTA+TGG | + | chr2.1:43218564-43218583 | None:intergenic | 40.0% | |
| CCATAATCATGAGTATGAGC+TGG | - | chr2.1:43218561-43218580 | MS.gene75861:intron | 40.0% | |
| GAAAAAACACAACAAGGGCT+GGG | + | chr2.1:43218729-43218748 | None:intergenic | 40.0% | |
| GACGAAGAAGATAAAAGCCT+TGG | - | chr2.1:43218326-43218345 | MS.gene75861:intron | 40.0% | |
| GGATTACAACTCCCTATACT+TGG | - | chr2.1:43218657-43218676 | MS.gene75861:intron | 40.0% | |
| GTCTAATTAATTCGGCCCAT+TGG | + | chr2.1:43220023-43220042 | None:intergenic | 40.0% | |
| GTTGCAATCAAATCAAGCAG+AGG | - | chr2.1:43218221-43218240 | MS.gene75861:intron | 40.0% | |
| GTTTGCATGCTAGTGAATAG+TGG | - | chr2.1:43220385-43220404 | MS.gene75861:CDS | 40.0% | |
| TCACTGTCACTACGAATATC+TGG | + | chr2.1:43218293-43218312 | None:intergenic | 40.0% | |
| TGCGGTAGAACTTCATTGAT+TGG | - | chr2.1:43220425-43220444 | MS.gene75861:CDS | 40.0% | |
| TTAGCCAACACAGAAATGTC+CGG | + | chr2.1:43218486-43218505 | None:intergenic | 40.0% | |
| TTGCAAACCCAACAAGAACA+TGG | - | chr2.1:43218254-43218273 | MS.gene75861:intron | 40.0% | |
| TTGCACCTTTCCGTAAAAGA+TGG | + | chr2.1:43219464-43219483 | None:intergenic | 40.0% | |
| TTTGAACGGCAACATGCAAT+GGG | + | chr2.1:43219799-43219818 | None:intergenic | 40.0% | |
| ! | GACTGGTTCAAAAGCATGTA+GGG | + | chr2.1:43220347-43220366 | None:intergenic | 40.0% |
| ! | TGACTGGTTCAAAAGCATGT+AGG | + | chr2.1:43220348-43220367 | None:intergenic | 40.0% |
| !! | AAGCTGTTTTGAGCTCGTTT+CGG | - | chr2.1:43220169-43220188 | MS.gene75861:intron | 40.0% |
| !! | ATCTCTATTCCGGCTTTGAA+CGG | + | chr2.1:43219813-43219832 | None:intergenic | 40.0% |
| !!! | GTTTTTCAGGTAGGTATCAG+TGG | - | chr2.1:43220104-43220123 | MS.gene75861:intron | 40.0% |
| AAGTCCTCATGTCCAGGATA+AGG | - | chr2.1:43219482-43219501 | MS.gene75861:CDS | 45.0% | |
| ACTAACTCCAAATTGGGAGC+CGG | - | chr2.1:43218116-43218135 | MS.gene75861:CDS | 45.0% | |
| AGATAAGAACGCAAGGCTCT+AGG | + | chr2.1:43219177-43219196 | None:intergenic | 45.0% | |
| AGGTCTCACTGCACTTCATA+AGG | - | chr2.1:43219407-43219426 | MS.gene75861:intron | 45.0% | |
| CCAACAAGAACATGGAACCT+GGG | - | chr2.1:43218262-43218281 | MS.gene75861:intron | 45.0% | |
| CCAGGTTCCATGTTCTTGTT+GGG | + | chr2.1:43218264-43218283 | None:intergenic | 45.0% | |
| CTTTGAACGGCAACATGCAA+TGG | + | chr2.1:43219800-43219819 | None:intergenic | 45.0% | |
| GCACTTCATAAGGCGGTTAT+AGG | - | chr2.1:43219417-43219436 | MS.gene75861:intron | 45.0% | |
| TATCGATCTATCTGCGCCAT+TGG | + | chr2.1:43219855-43219874 | None:intergenic | 45.0% | |
| TCTCACTGCACTTCATAAGG+CGG | - | chr2.1:43219410-43219429 | MS.gene75861:intron | 45.0% | |
| TTGAACGGCAACATGCAATG+GGG | + | chr2.1:43219798-43219817 | None:intergenic | 45.0% | |
| !! | ACGAATATCTGGTTCTTCCC+AGG | + | chr2.1:43218282-43218301 | None:intergenic | 45.0% |
| CACACCTTATCCTGGACATG+AGG | + | chr2.1:43219489-43219508 | None:intergenic | 50.0% | |
| CCCAACAAGAACATGGAACC+TGG | - | chr2.1:43218261-43218280 | MS.gene75861:intron | 50.0% | |
| CCCAGGTTCCATGTTCTTGT+TGG | + | chr2.1:43218265-43218284 | None:intergenic | 50.0% | |
| CTCATGTCCAGGATAAGGTG+TGG | - | chr2.1:43219487-43219506 | MS.gene75861:CDS | 50.0% | |
| TCAGGATGGGAAAACAGCAC+TGG | - | chr2.1:43220455-43220474 | MS.gene75861:CDS | 50.0% | |
| TGCATGTTGCCGTTCAAAGC+CGG | - | chr2.1:43219801-43219820 | MS.gene75861:intron | 50.0% | |
| ! | ATAAGCCAAGAGAGTGCAGC+GGG | + | chr2.1:43219241-43219260 | None:intergenic | 50.0% |
| ! | GATAAGCCAAGAGAGTGCAG+CGG | + | chr2.1:43219242-43219261 | None:intergenic | 50.0% |
| ! | GGCTCCCAATTTGGAGTTAG+TGG | + | chr2.1:43218117-43218136 | None:intergenic | 50.0% |
| AGAGACGCAGGACGAGTATG+AGG | - | chr2.1:43218379-43218398 | MS.gene75861:intron | 55.0% | |
| AGGTGCAAGTCCTCATGTCC+AGG | - | chr2.1:43219476-43219495 | MS.gene75861:CDS | 55.0% | |
| TGGGCCGGACATTTCTGTGT+TGG | - | chr2.1:43218479-43218498 | MS.gene75861:intron | 55.0% | |
| TTAATTCGGCCCATTGGGCC+TGG | + | chr2.1:43220017-43220036 | None:intergenic | 55.0% | |
| ! | GTGGAAACCGGCTCCCAATT+TGG | + | chr2.1:43218126-43218145 | None:intergenic | 55.0% |
| AGATGAGGGCCAGGCCCAAT+GGG | - | chr2.1:43220005-43220024 | MS.gene75861:intron | 60.0% | |
| GCAGGAAGAGACAGAGACGC+AGG | - | chr2.1:43218367-43218386 | MS.gene75861:intron | 60.0% | |
| TAGATGAGGGCCAGGCCCAA+TGG | - | chr2.1:43220004-43220023 | MS.gene75861:intron | 60.0% | |
| TGGAGCCCGCTGCACTCTCT+TGG | - | chr2.1:43219233-43219252 | MS.gene75861:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 43218059 | 43220554 | 43218059 | ID=MS.gene75861 |
| chr2.1 | mRNA | 43218059 | 43220554 | 43218059 | ID=MS.gene75861.t1;Parent=MS.gene75861 |
| chr2.1 | exon | 43220197 | 43220554 | 43220197 | ID=MS.gene75861.t1.exon1;Parent=MS.gene75861.t1 |
| chr2.1 | CDS | 43220197 | 43220554 | 43220197 | ID=cds.MS.gene75861.t1;Parent=MS.gene75861.t1 |
| chr2.1 | exon | 43219467 | 43219546 | 43219467 | ID=MS.gene75861.t1.exon2;Parent=MS.gene75861.t1 |
| chr2.1 | CDS | 43219467 | 43219546 | 43219467 | ID=cds.MS.gene75861.t1;Parent=MS.gene75861.t1 |
| chr2.1 | exon | 43219288 | 43219386 | 43219288 | ID=MS.gene75861.t1.exon3;Parent=MS.gene75861.t1 |
| chr2.1 | CDS | 43219288 | 43219386 | 43219288 | ID=cds.MS.gene75861.t1;Parent=MS.gene75861.t1 |
| chr2.1 | exon | 43219110 | 43219208 | 43219110 | ID=MS.gene75861.t1.exon4;Parent=MS.gene75861.t1 |
| chr2.1 | CDS | 43219110 | 43219208 | 43219110 | ID=cds.MS.gene75861.t1;Parent=MS.gene75861.t1 |
| chr2.1 | exon | 43218926 | 43219024 | 43218926 | ID=MS.gene75861.t1.exon5;Parent=MS.gene75861.t1 |
| chr2.1 | CDS | 43218926 | 43219024 | 43218926 | ID=cds.MS.gene75861.t1;Parent=MS.gene75861.t1 |
| chr2.1 | exon | 43218730 | 43218828 | 43218730 | ID=MS.gene75861.t1.exon6;Parent=MS.gene75861.t1 |
| chr2.1 | CDS | 43218730 | 43218828 | 43218730 | ID=cds.MS.gene75861.t1;Parent=MS.gene75861.t1 |
| chr2.1 | exon | 43218059 | 43218154 | 43218059 | ID=MS.gene75861.t1.exon7;Parent=MS.gene75861.t1 |
| chr2.1 | CDS | 43218059 | 43218154 | 43218059 | ID=cds.MS.gene75861.t1;Parent=MS.gene75861.t1 |
| Gene Sequence |
| Protein sequence |
