AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010910.t1 MTR_7g451420 96.795 312 10 0 1 312 1 312 0.0 624
MS.gene010910.t1 MTR_3g016210 64.000 325 106 1 2 315 3 327 4.91e-147 422
MS.gene010910.t1 MTR_8g072510 66.242 314 106 0 2 315 3 316 1.19e-146 421
MS.gene010910.t1 MTR_8g039620 67.197 314 100 1 5 315 10 323 3.67e-145 417
MS.gene010910.t1 MTR_8g073260 66.557 305 102 0 8 312 10 314 3.95e-145 418
MS.gene010910.t1 MTR_1g059930 67.647 306 99 0 6 311 9 314 1.03e-144 416
MS.gene010910.t1 MTR_8g467780 64.465 318 103 2 8 315 10 327 3.22e-141 408
MS.gene010910.t1 MTR_8g066670 66.772 316 103 2 1 315 1067 1381 3.27e-137 425
MS.gene010910.t1 MTR_7g021090 64.968 314 104 2 1 314 1 308 9.82e-137 395
MS.gene010910.t1 MTR_8g069880 64.537 313 109 2 4 315 2 313 4.92e-131 382
MS.gene010910.t1 MTR_8g062410 64.127 315 105 2 2 315 3 310 1.08e-128 376
MS.gene010910.t1 MTR_8g068990 61.905 315 101 4 5 315 8 307 2.05e-128 375
MS.gene010910.t1 MTR_8g040930 65.543 267 89 1 52 315 2 268 3.57e-120 352
MS.gene010910.t1 MTR_8g041240 65.543 267 89 1 52 315 2 268 3.57e-120 352
MS.gene010910.t1 MTR_3g105650 52.090 311 139 3 7 309 3 311 1.94e-103 311
MS.gene010910.t1 MTR_8g073275 48.148 324 95 5 52 312 2 315 2.74e-87 270
MS.gene010910.t1 MTR_7g117620 29.545 264 165 6 9 267 85 332 7.63e-20 90.9
MS.gene010910.t1 MTR_1g069110 26.300 327 207 10 1 315 5 309 6.19e-18 85.1
MS.gene010910.t1 MTR_2g096190 25.231 325 204 8 9 308 70 380 4.42e-17 82.8
MS.gene010910.t1 MTR_4g062100 25.538 325 203 7 9 308 74 384 5.14e-17 82.4
MS.gene010910.t1 MTR_1g115575 26.300 327 199 9 9 309 135 445 7.22e-17 82.0
MS.gene010910.t1 MTR_7g099570 27.236 246 165 3 1 241 1 237 4.66e-16 79.7
MS.gene010910.t1 MTR_2g101320 26.613 248 154 6 40 269 137 374 7.26e-16 79.0
MS.gene010910.t1 MTR_7g099580 23.659 317 191 5 6 317 9 279 1.88e-15 76.6
MS.gene010910.t1 MTR_7g100390 25.075 335 210 9 9 318 53 371 1.53e-13 72.0
MS.gene010910.t1 MTR_7g100390 28.324 173 113 5 4 175 117 279 4.21e-12 67.4
MS.gene010910.t1 MTR_8g105260 26.289 194 130 2 44 236 101 282 4.38e-13 70.5
MS.gene010910.t1 MTR_2g101310 27.368 190 127 3 40 228 137 316 2.56e-12 68.2
MS.gene010910.t1 MTR_2g101310 27.895 190 126 3 40 228 137 316 3.97e-12 67.4
MS.gene010910.t1 MTR_6g027840 30.542 203 129 7 37 230 239 438 6.56e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010910.t1 AT4G10720 41.905 315 171 3 8 312 4 316 9.77e-77 242
MS.gene010910.t1 AT4G10720 41.905 315 171 3 8 312 4 316 2.88e-76 241
MS.gene010910.t1 AT1G14500 39.498 319 174 5 8 312 4 317 9.88e-68 219
MS.gene010910.t1 AT5G54620 40.523 306 175 2 8 306 4 309 1.67e-67 218
MS.gene010910.t1 AT5G15500 38.924 316 185 3 9 316 6 321 3.49e-66 216
MS.gene010910.t1 AT1G14480 38.365 318 180 4 8 312 4 318 6.40e-64 209
MS.gene010910.t1 AT5G54610 37.171 304 178 5 8 302 4 303 4.99e-58 194
MS.gene010910.t1 AT1G14480 37.377 305 158 5 8 312 4 275 2.51e-51 176
MS.gene010910.t1 AT5G15500 34.419 215 133 3 110 316 1 215 5.65e-30 117
MS.gene010910.t1 AT5G51160 28.623 276 165 5 63 315 35 301 1.43e-28 115
MS.gene010910.t1 AT2G01680 28.708 209 129 3 44 244 97 293 3.47e-18 85.9
MS.gene010910.t1 AT4G03500 26.045 311 174 10 11 318 230 487 4.64e-18 85.9
MS.gene010910.t1 AT4G03500 26.045 311 174 10 11 318 230 487 4.64e-18 85.9
MS.gene010910.t1 AT4G03500 26.045 311 174 10 11 318 253 510 4.66e-18 85.9
MS.gene010910.t1 AT1G05640 25.656 343 205 10 9 322 157 478 1.21e-17 84.7
MS.gene010910.t1 AT1G07710 29.437 231 147 4 9 237 70 286 3.85e-16 79.7
MS.gene010910.t1 AT1G07710 29.437 231 147 4 9 237 70 286 3.85e-16 79.7
MS.gene010910.t1 AT2G31820 24.706 340 215 10 1 314 182 506 2.40e-15 77.8
MS.gene010910.t1 AT3G12360 25.545 321 203 7 12 309 136 443 2.67e-15 77.4
MS.gene010910.t1 AT3G12360 25.545 321 203 7 12 309 124 431 3.16e-15 77.0
MS.gene010910.t1 AT4G03460 25.497 302 169 9 11 309 206 454 3.53e-15 77.0
MS.gene010910.t1 AT4G03460 25.497 302 169 9 11 309 238 486 3.65e-15 77.0
MS.gene010910.t1 AT5G54710 24.661 369 209 11 1 312 140 496 1.29e-14 75.5
MS.gene010910.t1 AT5G54710 24.661 369 209 11 1 312 95 451 1.40e-14 75.1
MS.gene010910.t1 AT1G03670 28.151 238 142 8 88 318 266 481 3.77e-14 73.9
MS.gene010910.t1 AT3G09550 24.629 337 214 7 9 322 147 466 4.69e-14 73.6
MS.gene010910.t1 AT3G09550 24.629 337 214 7 9 322 147 466 4.69e-14 73.6
MS.gene010910.t1 AT3G09550 25.000 324 207 6 9 309 154 464 4.86e-14 73.6
MS.gene010910.t1 AT1G34050 25.287 261 171 6 65 312 174 423 6.11e-14 73.2
MS.gene010910.t1 AT1G10340 23.750 400 197 12 9 312 41 428 1.08e-13 72.4
MS.gene010910.t1 AT2G24600 27.338 278 161 11 68 312 163 432 1.79e-13 71.6
MS.gene010910.t1 AT2G24600 27.338 278 161 11 68 312 163 432 1.79e-13 71.6
MS.gene010910.t1 AT5G02620 26.577 222 149 3 9 229 60 268 1.85e-13 71.6
MS.gene010910.t1 AT5G02620 26.577 222 149 3 9 229 60 268 1.85e-13 71.6
MS.gene010910.t1 AT5G02620 26.577 222 149 3 9 229 60 268 1.85e-13 71.6
MS.gene010910.t1 AT2G24600 27.338 278 161 11 68 312 163 432 2.76e-13 71.2
MS.gene010910.t1 AT2G24600 27.338 278 161 11 68 312 163 432 2.76e-13 71.2
MS.gene010910.t1 AT1G10340 23.515 404 197 12 9 312 41 432 3.57e-13 70.9
MS.gene010910.t1 AT4G03490 27.532 316 154 14 9 308 211 467 1.92e-12 68.9
MS.gene010910.t1 AT4G03490 27.215 316 155 14 9 308 201 457 2.02e-12 68.6
MS.gene010910.t1 AT4G03490 27.215 316 155 14 9 308 211 467 2.04e-12 68.6
MS.gene010910.t1 AT4G03480 23.585 318 208 9 9 309 316 615 1.14e-11 66.2
MS.gene010910.t1 AT4G03480 23.585 318 208 9 9 309 319 618 1.16e-11 66.2
MS.gene010910.t1 AT5G02620 25.381 197 134 2 9 205 60 243 1.93e-11 65.5
MS.gene010910.t1 AT5G02620 25.381 197 134 2 9 205 60 243 1.93e-11 65.5
MS.gene010910.t1 AT4G03470 24.803 254 166 4 60 309 289 521 3.29e-11 65.1
MS.gene010910.t1 AT5G54700 25.688 218 120 6 101 312 23 204 5.87e-11 63.5
MS.gene010910.t1 AT4G03450 26.168 214 127 7 108 309 290 484 6.15e-11 63.9
MS.gene010910.t1 AT4G03450 25.417 240 139 8 108 326 290 510 7.80e-11 63.9

Find 68 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGAAGGCAAAGAATT+TGG 0.216334 7.2:+52879187 MS.gene010910:CDS
ATCTCCTTGTTTGCTTTCTT+AGG 0.273063 7.2:+52878232 MS.gene010910:CDS
AAGATCAAAGACCACTATTA+TGG 0.294629 7.2:+52879325 MS.gene010910:CDS
TCCCGTTGGTGGAGTTTATC+AGG 0.296151 7.2:+52879463 MS.gene010910:CDS
CTTCGATTGTTGGTAAGTAC+TGG 0.324415 7.2:+52879161 MS.gene010910:CDS
AGCTTTCAGTTTATCAAGAT+TGG 0.345596 7.2:-52877764 None:intergenic
AGCGAGAAACCATCCTCTTT+TGG 0.350553 7.2:-52878011 None:intergenic
CAATTTGAATTACTGCATAA+AGG 0.361525 7.2:-52877813 None:intergenic
AAAGACCTTGTTCGAGTTCA+AGG 0.377835 7.2:+52878048 MS.gene010910:CDS
CTTTGCATATCGCCGCATCT+AGG 0.387295 7.2:+52877884 MS.gene010910:CDS
GGGAGTCAGCGTTGATTGAT+AGG 0.399734 7.2:-52879444 None:intergenic
TAGCGCGGAAATGTGCAAAA+TGG 0.413101 7.2:-52878325 None:intergenic
AGCACAGGCGCTTCGATTGT+TGG 0.422551 7.2:+52879151 MS.gene010910:intron
ATTTGAAACCTTCATTTGCT+TGG 0.424279 7.2:+52877938 MS.gene010910:CDS
TCGCATTGAAAGAAATATAT+CGG 0.432489 7.2:+52879370 MS.gene010910:CDS
TTTGCATATCGCCGCATCTA+GGG 0.439653 7.2:+52877885 MS.gene010910:CDS
GCATCTCCGGTTTGCCATTG+AGG 0.441755 7.2:+52877909 MS.gene010910:CDS
CGAATCTATAATCTCTAGAA+TGG 0.451551 7.2:-52877842 None:intergenic
TTTCAAATTCATAACCTCAA+TGG 0.456133 7.2:-52877923 None:intergenic
CTTCATCTTGCAAGTCAAAT+CGG 0.456236 7.2:+52878090 MS.gene010910:CDS
ACCTGATAAACTCCACCAAC+GGG 0.462309 7.2:-52879464 None:intergenic
GAAACCTTCATTTGCTTGGA+AGG 0.463467 7.2:+52877942 MS.gene010910:CDS
CCCCACAGTCACATCTTGAA+TGG 0.468981 7.2:-52878157 None:intergenic
TTTACCTTCCAAGCAAATGA+AGG 0.484047 7.2:-52877946 None:intergenic
CTGAAAGCTGCAGCTGAAGC+GGG 0.490793 7.2:+52877778 MS.gene010910:CDS
TCATAACCTCAATGGCAAAC+CGG 0.496377 7.2:-52877915 None:intergenic
CTTAGGAGAAATATCGAAAG+AGG 0.497642 7.2:+52878249 MS.gene010910:CDS
AAGAGTATATTATTTAGTGC+TGG 0.498908 7.2:+52879251 MS.gene010910:CDS
AAAACCTAGCTTAGAAGTCA+TGG 0.503544 7.2:+52879277 MS.gene010910:CDS
CTATGCAAAATGACCAAAAG+AGG 0.517456 7.2:+52877998 MS.gene010910:CDS
GTCACATCTTGAATGGAATC+CGG 0.521024 7.2:-52878150 None:intergenic
TTGCATATCGCCGCATCTAG+GGG 0.527689 7.2:+52877886 MS.gene010910:CDS
TCAACGCTGACTCCCGTTGG+TGG 0.529986 7.2:+52879452 MS.gene010910:CDS
AAGTACTGGGATAAATTTGA+AGG 0.534665 7.2:+52879175 MS.gene010910:CDS
CGGAGAAGCAACGCAACACT+TGG 0.536689 7.2:+52879390 MS.gene010910:CDS
TCCATTCAAGATGTGACTGT+GGG 0.544369 7.2:+52878156 MS.gene010910:CDS
TTCGATTGTTGGTAAGTACT+GGG 0.548072 7.2:+52879162 MS.gene010910:CDS
ACTGAAAGCTGCAGCTGAAG+CGG 0.553330 7.2:+52877777 MS.gene010910:CDS
ATTTGACTTGCAAGATGAAG+AGG 0.554003 7.2:-52878087 None:intergenic
AAGACCTTGTTCGAGTTCAA+GGG 0.554891 7.2:+52878049 MS.gene010910:CDS
GTTCGAGTTCAAGGGAGAGA+AGG 0.562197 7.2:+52878057 MS.gene010910:CDS
CGCGCTAAGTAACGAGCCAC+AGG 0.564696 7.2:+52878341 MS.gene010910:CDS
TATACTCTTGTTCTCTAGAG+TGG 0.567180 7.2:-52879237 None:intergenic
TTCTCCTAAGAAAGCAAACA+AGG 0.575386 7.2:-52878236 None:intergenic
CTCTCCCTTGAACTCGAACA+AGG 0.580165 7.2:-52878053 None:intergenic
GCATCCATGACTTCTAAGCT+AGG 0.580948 7.2:-52879281 None:intergenic
TCTTAGTTTATGTGCAAGTG+TGG 0.599276 7.2:-52879306 None:intergenic
GCAAAATGACCAAAAGAGGA+TGG 0.601826 7.2:+52878002 MS.gene010910:CDS
TAAGAACAATGAAGCAGTGG+AGG 0.602961 7.2:+52880545 MS.gene010910:CDS
CTAGATGCGGCGATATGCAA+AGG 0.606329 7.2:-52877883 None:intergenic
CAATCAACGCTGACTCCCGT+TGG 0.612251 7.2:+52879449 MS.gene010910:CDS
AACCTGATAAACTCCACCAA+CGG 0.614968 7.2:-52879465 None:intergenic
CATACTAAATCACAAGGATG+AGG 0.615450 7.2:+52878293 MS.gene010910:CDS
TATTAAGAACAATGAAGCAG+TGG 0.627315 7.2:+52880542 MS.gene010910:CDS
CTGTGGCTCGTTACTTAGCG+CGG 0.635563 7.2:-52878340 None:intergenic
CTTAGTTTATGTGCAAGTGT+GGG 0.639068 7.2:-52879305 None:intergenic
TTCCATTCAAGATGTGACTG+TGG 0.644137 7.2:+52878155 MS.gene010910:CDS
GCTTGGAAGGTAAATCCGCA+AGG 0.645305 7.2:+52877955 MS.gene010910:CDS
CCATTCAAGATGTGACTGTG+GGG 0.654082 7.2:+52878157 MS.gene010910:CDS
TGCATATCGCCGCATCTAGG+GGG 0.655530 7.2:+52877887 MS.gene010910:CDS
CATTCAAGATGTGACTGTGG+GGG 0.655813 7.2:+52878158 MS.gene010910:CDS
ACTCTTGTTCTCTAGAGTGG+CGG 0.656146 7.2:-52879234 None:intergenic
AGTCAGCGTTGATTGATAGG+TGG 0.659373 7.2:-52879441 None:intergenic
TTTGCATAGCGAGATGAATG+GGG 0.662734 7.2:-52877984 None:intergenic
TGAATGGGGCTGAATCCTTG+CGG 0.670822 7.2:-52877970 None:intergenic
ATATAACATACTAAATCACA+AGG 0.679043 7.2:+52878287 MS.gene010910:CDS
TGAAACTGCACTGCATATTG+CGG 0.683454 7.2:+52878182 MS.gene010910:CDS
ATTCAAGATGTGACTGTGGG+GGG 0.686049 7.2:+52878159 MS.gene010910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTAATAATTAAACATATA+TGG - chr7.2:52880253-52880272 None:intergenic 10.0%
!! TGTATTAAATTATTAATGTT+TGG + chr7.2:52880110-52880129 MS.gene010910:intron 10.0%
!!! TTTTTTAAATATTGAAATCT+CGG - chr7.2:52878556-52878575 None:intergenic 10.0%
!! AACGAAGAAATAATATAAAA+GGG - chr7.2:52878731-52878750 None:intergenic 15.0%
!! GTTTAATTATTAAAGAGTTT+GGG + chr7.2:52880258-52880277 MS.gene010910:intron 15.0%
!! TAATAATTAAACATATATGG+TGG - chr7.2:52880250-52880269 None:intergenic 15.0%
!! TGTTTAATTATTAAAGAGTT+TGG + chr7.2:52880257-52880276 MS.gene010910:intron 15.0%
!!! GTTATTTAATTTTTATTGAG+AGG - chr7.2:52878756-52878775 None:intergenic 15.0%
!! AAAACTACTAAATATATGAC+AGG - chr7.2:52878373-52878392 None:intergenic 20.0%
!! ATATAACATACTAAATCACA+AGG + chr7.2:52878287-52878306 MS.gene010910:CDS 20.0%
!! CAACGAAGAAATAATATAAA+AGG - chr7.2:52878732-52878751 None:intergenic 20.0%
!! TGAAATTCTATGCATTTATA+CGG - chr7.2:52878641-52878660 None:intergenic 20.0%
!! TTCATCTCTTAAGTTATATA+AGG + chr7.2:52878439-52878458 MS.gene010910:intron 20.0%
!!! TTTAGTGTACTATAGATTTT+TGG + chr7.2:52879814-52879833 MS.gene010910:intron 20.0%
! AAACAATGATAACAATGACA+AGG - chr7.2:52880013-52880032 None:intergenic 25.0%
! AAATTTGAAGGCAAAGAATT+TGG + chr7.2:52879187-52879206 MS.gene010910:CDS 25.0%
! AATGACAACAAGTAAAAAAC+AGG - chr7.2:52878816-52878835 None:intergenic 25.0%
! AGATAAAACATTGTTGCAAT+AGG + chr7.2:52879871-52879890 MS.gene010910:intron 25.0%
! AGATACACACATATATGTAA+AGG + chr7.2:52878860-52878879 MS.gene010910:intron 25.0%
! ATCATGGTTTAATTAGATTG+AGG - chr7.2:52879033-52879052 None:intergenic 25.0%
! CAATCTAATTAAACCATGAT+GGG + chr7.2:52879033-52879052 MS.gene010910:intron 25.0%
! CAATTTGAATTACTGCATAA+AGG - chr7.2:52877816-52877835 None:intergenic 25.0%
! GGTGAAAAATAAAAACTTTG+AGG + chr7.2:52878203-52878222 MS.gene010910:CDS 25.0%
! TCAATCTAATTAAACCATGA+TGG + chr7.2:52879032-52879051 MS.gene010910:intron 25.0%
! TCGCATTGAAAGAAATATAT+CGG + chr7.2:52879370-52879389 MS.gene010910:CDS 25.0%
! TTAGTATTGCTATAGTTGAT+AGG - chr7.2:52879622-52879641 None:intergenic 25.0%
! TTTCAAATTCATAACCTCAA+TGG - chr7.2:52877926-52877945 None:intergenic 25.0%
!! AAGAGTATATTATTTAGTGC+TGG + chr7.2:52879251-52879270 MS.gene010910:CDS 25.0%
!! CAACATTTTATCCATAATAG+TGG - chr7.2:52879339-52879358 None:intergenic 25.0%
!! CACATTTTCTTGCAATATAA+AGG - chr7.2:52878926-52878945 None:intergenic 25.0%
!! TAAATCTTGAGTTGTCAATT+CGG - chr7.2:52878474-52878493 None:intergenic 25.0%
!! TTGCAACAATGTTTTATCTA+TGG - chr7.2:52879870-52879889 None:intergenic 25.0%
!!! TAAATTACTTTTTGCTTGTC+CGG + chr7.2:52878131-52878150 MS.gene010910:CDS 25.0%
!!! TTTTTAGTATTGTTGCAACA+GGG + chr7.2:52879777-52879796 MS.gene010910:intron 25.0%
!!! TTTTTTAGTATTGTTGCAAC+AGG + chr7.2:52879776-52879795 MS.gene010910:intron 25.0%
AAAAGAGGAACACATATTCT+CGG - chr7.2:52880382-52880401 None:intergenic 30.0%
AAAGAAATTCCAACACACAT+TGG - chr7.2:52880221-52880240 None:intergenic 30.0%
AAATGAAACGGTGTTTCATA+TGG - chr7.2:52880346-52880365 None:intergenic 30.0%
AAGATCAAAGACCACTATTA+TGG + chr7.2:52879325-52879344 MS.gene010910:CDS 30.0%
ACTACTAAATATATGACAGG+AGG - chr7.2:52878370-52878389 None:intergenic 30.0%
ACTCTTATAAATCTGTGCAA+TGG + chr7.2:52880443-52880462 MS.gene010910:intron 30.0%
AGCTTTCAGTTTATCAAGAT+TGG - chr7.2:52877767-52877786 None:intergenic 30.0%
ATGATAACATTGTCATGTGT+AGG - chr7.2:52879740-52879759 None:intergenic 30.0%
CACATATATGTAAAGGACAT+AGG + chr7.2:52878867-52878886 MS.gene010910:intron 30.0%
TATTAAGAACAATGAAGCAG+TGG + chr7.2:52880542-52880561 MS.gene010910:CDS 30.0%
TGATAACATTGTCATGTGTA+GGG - chr7.2:52879739-52879758 None:intergenic 30.0%
! ATAGAGAGAAGGTATAACAA+AGG - chr7.2:52879706-52879725 None:intergenic 30.0%
! ATTTGAAACCTTCATTTGCT+TGG + chr7.2:52877938-52877957 MS.gene010910:CDS 30.0%
! CGAATCTATAATCTCTAGAA+TGG - chr7.2:52877845-52877864 None:intergenic 30.0%
! TTTCTTACAAGTTGAAGAAG+AGG + chr7.2:52878391-52878410 MS.gene010910:intron 30.0%
! TTTGTTATACCTTCTCTCTA+TGG + chr7.2:52879705-52879724 MS.gene010910:intron 30.0%
!! AAGTACTGGGATAAATTTGA+AGG + chr7.2:52879175-52879194 MS.gene010910:CDS 30.0%
!! TGCTATAGTTGATAGGAAAA+AGG - chr7.2:52879615-52879634 None:intergenic 30.0%
!! TTAAAGACTAATTCTAGCTC+TGG + chr7.2:52880175-52880194 MS.gene010910:intron 30.0%
AAAACCTAGCTTAGAAGTCA+TGG + chr7.2:52879277-52879296 MS.gene010910:CDS 35.0%
AAAGTTCAAACTACCCATCA+TGG - chr7.2:52879049-52879068 None:intergenic 35.0%
AATCCAAATCCAACAACTCA+TGG + chr7.2:52878670-52878689 MS.gene010910:intron 35.0%
AATCTTCACAAGTAGTGAAC+TGG - chr7.2:52879076-52879095 None:intergenic 35.0%
AGTCTTACGATTAAGATCAG+TGG - chr7.2:52878605-52878624 None:intergenic 35.0%
ATTTCTACCCCAAAAAATGC+TGG + chr7.2:52879533-52879552 MS.gene010910:intron 35.0%
CATACTAAATCACAAGGATG+AGG + chr7.2:52878293-52878312 MS.gene010910:CDS 35.0%
CTATGCAAAATGACCAAAAG+AGG + chr7.2:52877998-52878017 MS.gene010910:CDS 35.0%
CTGGTCCTTTAACTAAGAAA+CGG + chr7.2:52880194-52880213 MS.gene010910:intron 35.0%
CTTAGGAGAAATATCGAAAG+AGG + chr7.2:52878249-52878268 MS.gene010910:CDS 35.0%
CTTAGTTTATGTGCAAGTGT+GGG - chr7.2:52879308-52879327 None:intergenic 35.0%
CTTCATCTTGCAAGTCAAAT+CGG + chr7.2:52878090-52878109 MS.gene010910:CDS 35.0%
GGTAGAAATTGTAGAATTGG+AGG - chr7.2:52879522-52879541 None:intergenic 35.0%
TCTTAGTTTATGTGCAAGTG+TGG - chr7.2:52879309-52879328 None:intergenic 35.0%
TGAGCTCAACTTATTGTAGA+TGG + chr7.2:52880482-52880501 MS.gene010910:intron 35.0%
TGGGGTAGAAATTGTAGAAT+TGG - chr7.2:52879525-52879544 None:intergenic 35.0%
TTAACTAGTCCATGAGTTGT+TGG - chr7.2:52878682-52878701 None:intergenic 35.0%
TTCTCCTAAGAAAGCAAACA+AGG - chr7.2:52878239-52878258 None:intergenic 35.0%
TTGGTCCGTTTCTTAGTTAA+AGG - chr7.2:52880202-52880221 None:intergenic 35.0%
TTTACCTTCCAAGCAAATGA+AGG - chr7.2:52877949-52877968 None:intergenic 35.0%
TTTCTACCCCAAAAAATGCT+GGG + chr7.2:52879534-52879553 MS.gene010910:intron 35.0%
! ATCTCCTTGTTTGCTTTCTT+AGG + chr7.2:52878232-52878251 MS.gene010910:CDS 35.0%
! ATTTTGCATAGCGAGATGAA+TGG - chr7.2:52877989-52878008 None:intergenic 35.0%
! CGACATTGCAATCACAATTT+TGG - chr7.2:52878959-52878978 None:intergenic 35.0%
! TATACTCTTGTTCTCTAGAG+TGG - chr7.2:52879240-52879259 None:intergenic 35.0%
! TTCGATTGTTGGTAAGTACT+GGG + chr7.2:52879162-52879181 MS.gene010910:CDS 35.0%
! TTTTGCATAGCGAGATGAAT+GGG - chr7.2:52877988-52878007 None:intergenic 35.0%
!! ATTTGACTTGCAAGATGAAG+AGG - chr7.2:52878090-52878109 None:intergenic 35.0%
!! TACAGACTCACAATTTGCTA+CGG - chr7.2:52880047-52880066 None:intergenic 35.0%
!! TGGACTAGTTAACTATCTAG+TGG + chr7.2:52878690-52878709 MS.gene010910:intron 35.0%
AACCTGATAAACTCCACCAA+CGG - chr7.2:52879468-52879487 None:intergenic 40.0%
AATAGGAGAAACACCCATCA+AGG + chr7.2:52879888-52879907 MS.gene010910:intron 40.0%
AGATTTAGATTGCGCACAGT+CGG + chr7.2:52878487-52878506 MS.gene010910:intron 40.0%
AGTCCATGAGTTGTTGGATT+TGG - chr7.2:52878676-52878695 None:intergenic 40.0%
ATACTAATTCTGACCCCAAG+AGG + chr7.2:52879635-52879654 MS.gene010910:intron 40.0%
CAAAGGATAAACCAAACCAC+TGG - chr7.2:52879689-52879708 None:intergenic 40.0%
CAGTTGTGACCTCAATACAA+AGG - chr7.2:52879000-52879019 None:intergenic 40.0%
CCCAAAAAATGCTGGGAAAT+CGG + chr7.2:52879541-52879560 MS.gene010910:intron 40.0%
CCTCAATACAAAGGACTTAG+AGG - chr7.2:52878991-52879010 None:intergenic 40.0%
CCTCTAAGTCCTTTGTATTG+AGG + chr7.2:52878988-52879007 MS.gene010910:intron 40.0%
CTCAACATGATGTGTGTTGT+TGG + chr7.2:52880146-52880165 MS.gene010910:intron 40.0%
GAAACCTTCATTTGCTTGGA+AGG + chr7.2:52877942-52877961 MS.gene010910:CDS 40.0%
GATTATCCTCCATAGAGAGA+AGG - chr7.2:52879717-52879736 None:intergenic 40.0%
GCAAAATGACCAAAAGAGGA+TGG + chr7.2:52878002-52878021 MS.gene010910:CDS 40.0%
GCAAGAAAATGTGTGTGATG+CGG + chr7.2:52878933-52878952 MS.gene010910:intron 40.0%
GTCACATCTTGAATGGAATC+CGG - chr7.2:52878153-52878172 None:intergenic 40.0%
GTTATACCTTCTCTCTATGG+AGG + chr7.2:52879708-52879727 MS.gene010910:intron 40.0%
TAAGAACAATGAAGCAGTGG+AGG + chr7.2:52880545-52880564 MS.gene010910:CDS 40.0%
TACTAATTCTGACCCCAAGA+GGG + chr7.2:52879636-52879655 MS.gene010910:intron 40.0%
TATTGTGCAAATTGACGTCG+AGG - chr7.2:52880418-52880437 None:intergenic 40.0%
TCATAACCTCAATGGCAAAC+CGG - chr7.2:52877918-52877937 None:intergenic 40.0%
TCCATTCAAGATGTGACTGT+GGG + chr7.2:52878156-52878175 MS.gene010910:CDS 40.0%
TGAAACTGCACTGCATATTG+CGG + chr7.2:52878182-52878201 MS.gene010910:CDS 40.0%
TGTTGGATTTGGATTGCACA+CGG - chr7.2:52878665-52878684 None:intergenic 40.0%
TTCCATTCAAGATGTGACTG+TGG + chr7.2:52878155-52878174 MS.gene010910:CDS 40.0%
TTGTATTGAGGTCACAACTG+CGG + chr7.2:52879000-52879019 MS.gene010910:intron 40.0%
TTGTGATTGCAATGTCGTTG+CGG + chr7.2:52878962-52878981 MS.gene010910:intron 40.0%
TTTGCATAGCGAGATGAATG+GGG - chr7.2:52877987-52878006 None:intergenic 40.0%
! AAAGACCTTGTTCGAGTTCA+AGG + chr7.2:52878048-52878067 MS.gene010910:CDS 40.0%
! AAGACCTTGTTCGAGTTCAA+GGG + chr7.2:52878049-52878068 MS.gene010910:CDS 40.0%
! CTTCGATTGTTGGTAAGTAC+TGG + chr7.2:52879161-52879180 MS.gene010910:CDS 40.0%
!!! ACCGATTTCCCAGCATTTTT+TGG - chr7.2:52879545-52879564 None:intergenic 40.0%
!!! CCGATTTCCCAGCATTTTTT+GGG - chr7.2:52879544-52879563 None:intergenic 40.0%
!!! CGATTTCCCAGCATTTTTTG+GGG - chr7.2:52879543-52879562 None:intergenic 40.0%
ACCTGATAAACTCCACCAAC+GGG - chr7.2:52879467-52879486 None:intergenic 45.0%
AGAAACACCCATCAAGGTTG+TGG + chr7.2:52879894-52879913 MS.gene010910:intron 45.0%
AGAAACGGACCAATGTGTGT+TGG + chr7.2:52880209-52880228 MS.gene010910:intron 45.0%
ATATGACAGGAGGTTACCTG+TGG - chr7.2:52878360-52878379 None:intergenic 45.0%
ATTCAAGATGTGACTGTGGG+GGG + chr7.2:52878159-52878178 MS.gene010910:CDS 45.0%
CATCAAGGTTGTGGGATAGA+CGG + chr7.2:52879903-52879922 MS.gene010910:intron 45.0%
CATGACTTACTCTGTAGCAC+AGG + chr7.2:52879136-52879155 MS.gene010910:intron 45.0%
CATTCAAGATGTGACTGTGG+GGG + chr7.2:52878158-52878177 MS.gene010910:CDS 45.0%
CCATTCAAGATGTGACTGTG+GGG + chr7.2:52878157-52878176 MS.gene010910:CDS 45.0%
GAAACACCCATCAAGGTTGT+GGG + chr7.2:52879895-52879914 MS.gene010910:intron 45.0%
GATAAACCAAACCACTGGAC+CGG - chr7.2:52879684-52879703 None:intergenic 45.0%
GCATCCATGACTTCTAAGCT+AGG - chr7.2:52879284-52879303 None:intergenic 45.0%
GTCTATCCCACAACCTTGAT+GGG - chr7.2:52879904-52879923 None:intergenic 45.0%
TAGCGCGGAAATGTGCAAAA+TGG - chr7.2:52878328-52878347 None:intergenic 45.0%
TTTGCATATCGCCGCATCTA+GGG + chr7.2:52877885-52877904 MS.gene010910:CDS 45.0%
! AGCGAGAAACCATCCTCTTT+TGG - chr7.2:52878014-52878033 None:intergenic 45.0%
! GTGTTCCTCTTTTCCCATAC+CGG + chr7.2:52880389-52880408 MS.gene010910:intron 45.0%
!! ACTCTTGTTCTCTAGAGTGG+CGG - chr7.2:52879237-52879256 None:intergenic 45.0%
!! AGTCAGCGTTGATTGATAGG+TGG - chr7.2:52879444-52879463 None:intergenic 45.0%
!! TTGTTTCTGACTTCCACCAG+CGG - chr7.2:52879962-52879981 None:intergenic 45.0%
!! ATTTAAAAAATAAAATGAAA+CGG - chr7.2:52880358-52880377 None:intergenic 5.0%
AATTCTGACCCCAAGAGGGA+GGG + chr7.2:52879640-52879659 MS.gene010910:intron 50.0%
ACTGAAAGCTGCAGCTGAAG+CGG + chr7.2:52877777-52877796 MS.gene010910:CDS 50.0%
AGTCAGCACGAGCAAGATTG+AGG + chr7.2:52878528-52878547 MS.gene010910:intron 50.0%
CAAATTGACGTCGAGGCAAC+CGG - chr7.2:52880411-52880430 None:intergenic 50.0%
CCCCACAGTCACATCTTGAA+TGG - chr7.2:52878160-52878179 None:intergenic 50.0%
CGTCTATCCCACAACCTTGA+TGG - chr7.2:52879905-52879924 None:intergenic 50.0%
CTAGATGCGGCGATATGCAA+AGG - chr7.2:52877886-52877905 None:intergenic 50.0%
CTCTCCCTTGAACTCGAACA+AGG - chr7.2:52878056-52878075 None:intergenic 50.0%
CTTTGCATATCGCCGCATCT+AGG + chr7.2:52877884-52877903 MS.gene010910:CDS 50.0%
GCTTGGAAGGTAAATCCGCA+AGG + chr7.2:52877955-52877974 MS.gene010910:CDS 50.0%
TAATTCTGACCCCAAGAGGG+AGG + chr7.2:52879639-52879658 MS.gene010910:intron 50.0%
TGAATGGGGCTGAATCCTTG+CGG - chr7.2:52877973-52877992 None:intergenic 50.0%
TTGCATATCGCCGCATCTAG+GGG + chr7.2:52877886-52877905 MS.gene010910:CDS 50.0%
! GTTCGAGTTCAAGGGAGAGA+AGG + chr7.2:52878057-52878076 MS.gene010910:CDS 50.0%
! TCCCGTTGGTGGAGTTTATC+AGG + chr7.2:52879463-52879482 MS.gene010910:CDS 50.0%
!! GGGAGTCAGCGTTGATTGAT+AGG - chr7.2:52879447-52879466 None:intergenic 50.0%
AGCACAGGCGCTTCGATTGT+TGG + chr7.2:52879151-52879170 MS.gene010910:intron 55.0%
CGGAGAAGCAACGCAACACT+TGG + chr7.2:52879390-52879409 MS.gene010910:CDS 55.0%
CTGAAAGCTGCAGCTGAAGC+GGG + chr7.2:52877778-52877797 MS.gene010910:CDS 55.0%
CTGTGGCTCGTTACTTAGCG+CGG - chr7.2:52878343-52878362 None:intergenic 55.0%
GGCAACCGGTATGGGAAAAG+AGG - chr7.2:52880397-52880416 None:intergenic 55.0%
TGAGGTCACAACTGCGGTTG+CGG + chr7.2:52879006-52879025 MS.gene010910:intron 55.0%
TGCATATCGCCGCATCTAGG+GGG + chr7.2:52877887-52877906 MS.gene010910:CDS 55.0%
! GCATCTCCGGTTTGCCATTG+AGG + chr7.2:52877909-52877928 MS.gene010910:CDS 55.0%
!! CAATCAACGCTGACTCCCGT+TGG + chr7.2:52879449-52879468 MS.gene010910:CDS 55.0%
AGAGAGCCTACCCTCCCTCT+TGG - chr7.2:52879653-52879672 None:intergenic 60.0%
AGAGCCTACCCTCCCTCTTG+GGG - chr7.2:52879651-52879670 None:intergenic 60.0%
CGCGCTAAGTAACGAGCCAC+AGG + chr7.2:52878341-52878360 MS.gene010910:CDS 60.0%
GACGTCGAGGCAACCGGTAT+GGG - chr7.2:52880405-52880424 None:intergenic 60.0%
GAGAGCCTACCCTCCCTCTT+GGG - chr7.2:52879652-52879671 None:intergenic 60.0%
GAGGGTAGGCTCTCTAGTCG+TGG + chr7.2:52879658-52879677 MS.gene010910:intron 60.0%
GAGGTCACAACTGCGGTTGC+GGG + chr7.2:52879007-52879026 MS.gene010910:intron 60.0%
GTAGGCTCTCTAGTCGTGGC+CGG + chr7.2:52879662-52879681 MS.gene010910:intron 60.0%
TCCACCAGCGGTAGTTCGAG+TGG - chr7.2:52879950-52879969 None:intergenic 60.0%
TCTGCCACTCGAACTACCGC+TGG + chr7.2:52879943-52879962 MS.gene010910:intron 60.0%
TGACGTCGAGGCAACCGGTA+TGG - chr7.2:52880406-52880425 None:intergenic 60.0%
!! TCAACGCTGACTCCCGTTGG+TGG + chr7.2:52879452-52879471 MS.gene010910:CDS 60.0%
CCGGAGATGCCCCCTAGATG+CGG - chr7.2:52877899-52877918 None:intergenic 65.0%
CTGACCCCAAGAGGGAGGGT+AGG + chr7.2:52879644-52879663 MS.gene010910:intron 65.0%
GCCACTCGAACTACCGCTGG+TGG + chr7.2:52879946-52879965 MS.gene010910:intron 65.0%
TCGTGGCCGGTCCAGTGGTT+TGG + chr7.2:52879675-52879694 MS.gene010910:intron 65.0%
TCTAGTCGTGGCCGGTCCAG+TGG + chr7.2:52879670-52879689 MS.gene010910:intron 65.0%
!! CCGCATCTAGGGGGCATCTC+CGG + chr7.2:52877896-52877915 MS.gene010910:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 52877754 52880614 52877754 ID=MS.gene010910
chr7.2 mRNA 52877754 52880614 52877754 ID=MS.gene010910.t1;Parent=MS.gene010910
chr7.2 exon 52877754 52878362 52877754 ID=MS.gene010910.t1.exon1;Parent=MS.gene010910.t1
chr7.2 CDS 52877754 52878362 52877754 ID=cds.MS.gene010910.t1;Parent=MS.gene010910.t1
chr7.2 exon 52879158 52879484 52879158 ID=MS.gene010910.t1.exon2;Parent=MS.gene010910.t1
chr7.2 CDS 52879158 52879484 52879158 ID=cds.MS.gene010910.t1;Parent=MS.gene010910.t1
chr7.2 exon 52880501 52880614 52880501 ID=MS.gene010910.t1.exon3;Parent=MS.gene010910.t1
chr7.2 CDS 52880501 52880614 52880501 ID=cds.MS.gene010910.t1;Parent=MS.gene010910.t1
Gene Sequence

>MS.gene010910

ATGAGCACAACCAATCTTGATAAACTGAAAGCTGCAGCTGAAGCGGGTAATATAGACATCCTTTATGCAGTAATTCAAATTGATTCGTCCATTCTAGAGATTATAGATTCGAATCAGTTTGTTGAAACTCCTTTGCATATCGCCGCATCTAGGGGGCATCTCCGGTTTGCCATTGAGGTTATGAATTTGAAACCTTCATTTGCTTGGAAGGTAAATCCGCAAGGATTCAGCCCCATTCATCTCGCTATGCAAAATGACCAAAAGAGGATGGTTTCTCGCTTTGTTGACATTAATAAAGACCTTGTTCGAGTTCAAGGGAGAGAAGGCTTAACGCCTCTTCATCTTGCAAGTCAAATCGGTGAAGTTGAACTTTTAGCTAAATTACTTTTTGCTTGTCCGGATTCCATTCAAGATGTGACTGTGGGGGGTGAAACTGCACTGCATATTGCGGTGAAAAATAAAAACTTTGAGGCTCTTCATCTCCTTGTTTGCTTTCTTAGGAGAAATATCGAAAGAGGCGCTAGAGAGTTTGAATATAACATACTAAATCACAAGGATGAGGATGACAACACCATTTTGCACATTTCCGCGCTAAGTAACGAGCCACAGGTAACCTCCTGTCATATATTTAGTAGTTTTTCTTACAAGTTGAAGAAGAGGAAATTATATTCGAGCATATTTAAACTTCATCTCTTAAGTTATATAAGGTCAAACTCACCGAATTGACAACTCAAGATTTAGATTGCGCACAGTCGGAATTCTATGCATTTATGTAGTCAGCACGAGCAAGATTGAGGAACCGAGATTTCAATATTTAAAAAATAAAATCTGCATGTTTCTTGCAATGTCCACTGATCTTAATCGTAAGACTAGCGATGTGCTAACCGTATAAATGCATAGAATTTCATCCGTGTGCAATCCAAATCCAACAACTCATGGACTAGTTAACTATCTAGTGGTTGCTATCTCATGTTCCCTTTTATATTATTTCTTCGTTGTCCTCTCAATAAAAATTAAATAACACATCATAAAATACATCTCATCTTGTAAATGATATAACCTGTTTTTTACTTGTTGTCATTTTTATCGAGAAAACATGAAAGAAAAGATACACACATATATGTAAAGGACATAGGTTGCATAATTTTGAATAGTTGTTATGCTGAGAACCTTTATATTGCAAGAAAATGTGTGTGATGCGGCCAAAATTGTGATTGCAATGTCGTTGCGGAGACCTCTAAGTCCTTTGTATTGAGGTCACAACTGCGGTTGCGGGCCTCAATCTAATTAAACCATGATGGGTAGTTTGAACTTTGAATCCAGTTCACTACTTGTGAAGATTTTAGTTGCTAATATGAATGATCTCTAACAATTGCATAGTTCATGACTTACTCTGTAGCACAGGCGCTTCGATTGTTGGTAAGTACTGGGATAAATTTGAAGGCAAAGAATTTGGAGAACAAAACAGCATTAGACATAGCCGCCACTCTAGAGAACAAGAGTATATTATTTAGTGCTGGATCAAAACCTAGCTTAGAAGTCATGGATGCTCCCACACTTGCACATAAACTAAGATCAAAGACCACTATTATGGATAAAATGTTGATTTATGTACGTCGCATTGAAAGAAATATATCGGAGAAGCAACGCAACACTTGGTTGATAATTGCGACTCTTGTTGCAACAGCCACCTATCAATCAACGCTGACTCCCGTTGGTGGAGTTTATCAGGTTAGTGCTAGTGACAATAATGTGAACAACACTTCCTCCAATTCTACAATTTCTACCCCAAAAAATGCTGGGAAATCGGTCTTGTAAAAAGTTGATTTCTTTTTGTTTTCATATATGAATATGATTTCCTTTTTCCTATCAACTATAGCAATACTAATTCTGACCCCAAGAGGGAGGGTAGGCTCTCTAGTCGTGGCCGGTCCAGTGGTTTGGTTTATCCTTTGTTATACCTTCTCTCTATGGAGGATAATCCCTACACATGACAATGTTATCATGTTTAATTTAATTTTCTTTTTTAGTATTGTTGCAACAGGGATTTGCTGCATTATTTTAGTGTACTATAGATTTTTGGCTTCTGCACAATAGTAACAAATTGAATAGACCATAGATAAAACATTGTTGCAATAGGAGAAACACCCATCAAGGTTGTGGGATAGACGGTACAATCGCTAATGAAATCTGCCACTCGAACTACCGCTGGTGGAAGTCAGAAACAACGATATCGCAACGTTAATTTGCAGTTTTCCTTGTCATTGTTATCATTGTTTCTTTTCAACAACCGTAGCAAATTGTGAGTCTGTATTTAATTATTATCTTAATCATATTTGTATTTATTGAATGTATGTGTATTAAATTATTAATGTTTGGAAGAAAAATATTACTCAACATGATGTGTGTTGTTGGTCTTTTTTAAAGACTAATTCTAGCTCTGGTCCTTTAACTAAGAAACGGACCAATGTGTGTTGGAATTTCTTTTATACTCCACCATATATGTTTAATTATTAAAGAGTTTGGGCATGATTGTATTTAAATTATTTAAATTATTGAAGTTATTTTTAAAAATGAATGATCTACTTACCATATGAAACACCGTTTCATTTTATTTTTTAAATGCCGAGAATATGTGTTCCTCTTTTCCCATACCGGTTGCCTCGACGTCAATTTGCACAATACTTAAACTCTTATAAATCTGTGCAATGGATCTTTATAGTATATCTGAGCTCAACTTATTGTAGATGGATTCACAACATCTACTTCTGATATTGACTATACTGCATATTAAGAACAATGAAGCAGTGGAGGAAATCAACGATGAAGATGAAACTGAAAGAAAAGCTCTAGCTCCGTGA

Protein sequence

>MS.gene010910.t1

MSTTNLDKLKAAAEAGNIDILYAVIQIDSSILEIIDSNQFVETPLHIAASRGHLRFAIEVMNLKPSFAWKVNPQGFSPIHLAMQNDQKRMVSRFVDINKDLVRVQGREGLTPLHLASQIGEVELLAKLLFACPDSIQDVTVGGETALHIAVKNKNFEALHLLVCFLRRNIERGAREFEYNILNHKDEDDNTILHISALSNEPQALRLLVSTGINLKAKNLENKTALDIAATLENKSILFSAGSKPSLEVMDAPTLAHKLRSKTTIMDKMLIYVRRIERNISEKQRNTWLIIATLVATATYQSTLTPVGGVYQMDSQHLLLILTILHIKNNEAVEEINDEDETERKALAP