AlfalfaGEDB | MS.gene052956

M. sativa cultivar XinJiangDaYe / MS.gene052956

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13857.9 PF13962.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052956.t1	XP_024627459.1	72.4	439	112	2	1	439	1	430	2.70E-118	435.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052956.t1	Q8GYH5	34.9	424	236	9	9	422	4	397	4.8e-15	84.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052956.t1	A0A396GR94	72.4	439	112	2	1	439	1	430	1.9e-118	435.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052956	MS.gene24922	0.931462	3.65E-94	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene052956	MS.gene81055	PPI
MS.gene052956	MS.gene65775	PPI
MS.gene30433	MS.gene052956	PPI
MS.gene052956	MS.gene80163	PPI
MS.gene007487	MS.gene052956	PPI
MS.gene012203	MS.gene052956	PPI
MS.gene34651	MS.gene052956	PPI
MS.gene018518	MS.gene052956	PPI
MS.gene010910	MS.gene052956	PPI
MS.gene052956	MS.gene045937	PPI
MS.gene052956	MS.gene027072	PPI
MS.gene025229	MS.gene052956	PPI
MS.gene052956	MS.gene65463	PPI
MS.gene052956	MS.gene007485	PPI
MS.gene063222	MS.gene052956	PPI
MS.gene25515	MS.gene052956	PPI
MS.gene07706	MS.gene052956	PPI
MS.gene027074	MS.gene052956	PPI
MS.gene052956	MS.gene87218	PPI
MS.gene69687	MS.gene052956	PPI
MS.gene010912	MS.gene052956	PPI
MS.gene25024	MS.gene052956	PPI
MS.gene23811	MS.gene052956	PPI
MS.gene23810	MS.gene052956	PPI
MS.gene052956	MS.gene043742	PPI
MS.gene052956	MS.gene027441	PPI
MS.gene51335	MS.gene052956	PPI
MS.gene052956	MS.gene050457	PPI
MS.gene78281	MS.gene052956	PPI
MS.gene052956	MS.gene99973	PPI
MS.gene005995	MS.gene052956	PPI
MS.gene037950	MS.gene052956	PPI
MS.gene052956	MS.gene008833	PPI
MS.gene068249	MS.gene052956	PPI
MS.gene051003	MS.gene052956	PPI
MS.gene64441	MS.gene052956	PPI
MS.gene24806	MS.gene052956	PPI
MS.gene004844	MS.gene052956	PPI
MS.gene30176	MS.gene052956	PPI
MS.gene052956	MS.gene48655	PPI
MS.gene066464	MS.gene052956	PPI
MS.gene052956	MS.gene037184	PPI
MS.gene24922	MS.gene052956	PPI
MS.gene052956	MS.gene23196	PPI
MS.gene027073	MS.gene052956	PPI
MS.gene064542	MS.gene052956	PPI
MS.gene066467	MS.gene052956	PPI
MS.gene47479	MS.gene052956	PPI
MS.gene052956	MS.gene067705	PPI
MS.gene008767	MS.gene052956	PPI
MS.gene34712	MS.gene052956	PPI
MS.gene052956	MS.gene30174	PPI
MS.gene052956	MS.gene26021	PPI
MS.gene36842	MS.gene052956	PPI
MS.gene99554	MS.gene052956	PPI
MS.gene052956	MS.gene050456	PPI
MS.gene066046	MS.gene052956	PPI
MS.gene052956	MS.gene51258	PPI
MS.gene058128	MS.gene052956	PPI
MS.gene99588	MS.gene052956	PPI
MS.gene027075	MS.gene052956	PPI
MS.gene41291	MS.gene052956	PPI
MS.gene052956	MS.gene053363	PPI
MS.gene052956	MS.gene91775	PPI
MS.gene27223	MS.gene052956	PPI
MS.gene63085	MS.gene052956	PPI
MS.gene056455	MS.gene052956	PPI
MS.gene052956	MS.gene32726	PPI
MS.gene052956	MS.gene050270	PPI
MS.gene052956	MS.gene60920	PPI
MS.gene052956	MS.gene73119	PPI
MS.gene052956	MS.gene92243	PPI
MS.gene22482	MS.gene052956	PPI
MS.gene039682	MS.gene052956	PPI
MS.gene052956	MS.gene34009	PPI
MS.gene061932	MS.gene052956	PPI
MS.gene052956	MS.gene043662	PPI
MS.gene052956	MS.gene065848	PPI
MS.gene26532	MS.gene052956	PPI
MS.gene042783	MS.gene052956	PPI
MS.gene052956	MS.gene99588	PPI
MS.gene052956	MS.gene54764	PPI
MS.gene21734	MS.gene052956	PPI
MS.gene33377	MS.gene052956	PPI
MS.gene052956	MS.gene038519	PPI
MS.gene052956	MS.gene27223	PPI
MS.gene052956	MS.gene39623	PPI
MS.gene71204	MS.gene052956	PPI
MS.gene007486	MS.gene052956	PPI
MS.gene041770	MS.gene052956	PPI
MS.gene97943	MS.gene052956	PPI
MS.gene052956	MS.gene050272	PPI
MS.gene26672	MS.gene052956	PPI
MS.gene97379	MS.gene052956	PPI
MS.gene052956	MS.gene32723	PPI
MS.gene022109	MS.gene052956	PPI
MS.gene052956	MS.gene02469	PPI
MS.gene066501	MS.gene052956	PPI
MS.gene25244	MS.gene052956	PPI
MS.gene08470	MS.gene052956	PPI
MS.gene89986	MS.gene052956	PPI
MS.gene26019	MS.gene052956	PPI
MS.gene052956	MS.gene71122	PPI
MS.gene052956	MS.gene51278	PPI
MS.gene035805	MS.gene052956	PPI
MS.gene052956	MS.gene85534	PPI
MS.gene69965	MS.gene052956	PPI
MS.gene052956	MS.gene51262	PPI
MS.gene066500	MS.gene052956	PPI
MS.gene052956	MS.gene23881	PPI
MS.gene052956	MS.gene014931	PPI
MS.gene82740	MS.gene052956	PPI
MS.gene052956	MS.gene062662	PPI
MS.gene052956	MS.gene21888	PPI
MS.gene024753	MS.gene052956	PPI
MS.gene052956	MS.gene066500	PPI
MS.gene052956	MS.gene30177	PPI
MS.gene052956	MS.gene70008	PPI
MS.gene70008	MS.gene052956	PPI
MS.gene30172	MS.gene052956	PPI
MS.gene052956	MS.gene90400	PPI
MS.gene23852	MS.gene052956	PPI
MS.gene69966	MS.gene052956	PPI
MS.gene071113	MS.gene052956	PPI
MS.gene027071	MS.gene052956	PPI
MS.gene67157	MS.gene052956	PPI
MS.gene052956	MS.gene09785	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052956.t1	MTR_8g072510	72.383	449	114	5	1	443	1	445	0.0	641
MS.gene052956.t1	MTR_8g062410	72.261	429	110	2	1	429	1	420	0.0	607
MS.gene052956.t1	MTR_7g021090	66.921	393	122	3	4	395	3	388	0.0	525
MS.gene052956.t1	MTR_3g016210	61.036	444	154	6	1	427	1	442	0.0	518
MS.gene052956.t1	MTR_8g039620	63.170	429	148	6	2	427	6	427	0.0	514
MS.gene052956.t1	MTR_1g059930	65.909	352	119	1	8	359	10	360	1.69e-162	465
MS.gene052956.t1	MTR_8g068990	63.315	368	114	6	8	371	10	360	1.43e-156	451
MS.gene052956.t1	MTR_8g069880	54.933	446	181	7	6	435	3	444	3.64e-153	442
MS.gene052956.t1	MTR_8g066670	55.936	438	188	4	1	438	1067	1499	2.26e-151	467
MS.gene052956.t1	MTR_8g073260	53.348	448	190	8	1	445	1	432	4.58e-147	427
MS.gene052956.t1	MTR_7g451420	66.987	312	102	1	3	314	2	312	6.09e-145	416
MS.gene052956.t1	MTR_8g040930	60.942	361	130	7	52	407	1	355	3.29e-143	414
MS.gene052956.t1	MTR_8g041240	60.942	361	130	7	52	407	1	355	3.29e-143	414
MS.gene052956.t1	MTR_8g467780	54.839	403	170	4	9	401	10	410	1.44e-139	408
MS.gene052956.t1	MTR_3g105650	43.552	411	193	6	7	408	2	382	2.98e-107	324
MS.gene052956.t1	MTR_8g073275	40.693	462	193	10	52	446	1	448	2.52e-92	287
MS.gene052956.t1	MTR_1g069110	28.606	416	251	11	10	408	18	404	9.99e-36	137
MS.gene052956.t1	MTR_7g099580	24.916	297	173	7	22	314	24	274	6.03e-23	99.8
MS.gene052956.t1	MTR_7g099570	29.469	207	132	3	10	211	9	206	1.25e-21	98.2
MS.gene052956.t1	MTR_2g101320	26.577	222	146	3	38	252	134	345	6.71e-18	86.7
MS.gene052956.t1	MTR_7g117620	28.205	312	191	11	45	348	119	405	1.47e-16	82.4
MS.gene052956.t1	MTR_2g101310	27.368	190	128	2	41	230	137	316	3.31e-16	81.6
MS.gene052956.t1	MTR_1g032100	25.517	290	178	5	46	310	95	371	1.01e-15	79.7
MS.gene052956.t1	MTR_2g101310	27.368	190	128	2	41	230	137	316	1.16e-15	79.3
MS.gene052956.t1	MTR_8g105260	26.271	236	153	4	45	272	101	323	1.83e-14	75.9
MS.gene052956.t1	MTR_5g085500	27.439	164	108	3	72	232	1	156	4.24e-13	71.2
MS.gene052956.t1	MTR_4g062100	25.773	291	149	10	43	267	32	321	2.18e-12	69.3
MS.gene052956.t1	MTR_7g100390	25.916	382	199	14	5	363	83	403	3.87e-12	68.6
MS.gene052956.t1	MTR_1g115575	23.380	432	261	12	43	422	132	545	5.05e-12	68.2
MS.gene052956.t1	MTR_5g085830	22.819	447	252	14	12	412	281	680	1.13e-11	67.4
MS.gene052956.t1	MTR_2g096190	25.000	184	127	2	5	188	100	272	8.24e-11	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052956.t1	AT4G10720	36.543	405	232	5	9	404	4	392	3.05e-84	266
MS.gene052956.t1	AT1G14480	34.945	455	256	9	9	444	4	437	1.15e-81	259
MS.gene052956.t1	AT4G10720	39.688	320	186	1	9	321	4	323	6.58e-80	253
MS.gene052956.t1	AT5G15500	39.785	372	203	7	10	374	6	363	4.24e-78	250
MS.gene052956.t1	AT1G14500	32.135	445	263	6	9	439	4	423	9.56e-77	246
MS.gene052956.t1	AT5G54620	35.381	407	244	6	9	398	4	408	9.18e-74	238
MS.gene052956.t1	AT5G54610	31.250	416	242	10	9	413	4	386	1.50e-63	211
MS.gene052956.t1	AT1G14480	33.108	444	236	12	9	444	4	394	1.48e-60	202
MS.gene052956.t1	AT5G15500	35.055	271	155	7	111	374	1	257	8.30e-36	135
MS.gene052956.t1	AT5G51160	29.111	371	217	10	64	404	35	389	8.79e-34	132
MS.gene052956.t1	AT4G03500	31.336	217	128	5	99	311	280	479	8.28e-21	95.5
MS.gene052956.t1	AT4G03500	31.336	217	128	5	99	311	280	479	8.28e-21	95.5
MS.gene052956.t1	AT4G03500	31.336	217	128	5	99	311	303	502	9.92e-21	95.5
MS.gene052956.t1	AT4G03490	24.107	448	258	13	10	428	211	605	2.06e-18	88.2
MS.gene052956.t1	AT4G03490	24.107	448	258	13	10	428	201	595	2.43e-18	88.2
MS.gene052956.t1	AT4G03460	30.556	216	126	5	101	311	290	486	3.06e-18	87.8
MS.gene052956.t1	AT4G03460	30.556	216	126	5	101	311	258	454	3.18e-18	87.8
MS.gene052956.t1	AT2G01680	23.729	354	212	7	45	372	97	418	8.03e-17	83.2
MS.gene052956.t1	AT4G03490	27.742	310	163	11	10	311	211	467	1.30e-16	82.8
MS.gene052956.t1	AT1G34050	28.137	263	162	6	66	314	174	423	1.41e-16	82.4
MS.gene052956.t1	AT5G54710	26.066	422	235	20	66	446	232	617	6.06e-16	80.9
MS.gene052956.t1	AT5G54710	26.066	422	235	20	66	446	187	572	6.17e-16	80.5
MS.gene052956.t1	AT1G03670	25.547	274	161	6	102	370	279	514	5.35e-14	74.7
MS.gene052956.t1	AT5G54700	26.452	310	183	11	109	409	30	303	3.33e-13	70.9
MS.gene052956.t1	AT2G24600	25.606	289	176	8	80	337	175	455	5.88e-13	71.2
MS.gene052956.t1	AT2G24600	25.606	289	176	8	80	337	175	455	5.88e-13	71.2
MS.gene052956.t1	AT2G24600	26.316	266	157	7	80	314	175	432	6.86e-13	70.9
MS.gene052956.t1	AT2G24600	26.316	266	157	7	80	314	175	432	6.86e-13	70.9
MS.gene052956.t1	AT3G12360	23.744	438	236	16	5	372	61	470	7.84e-13	70.9
MS.gene052956.t1	AT1G05640	27.835	291	169	11	45	310	191	465	7.97e-13	70.9
MS.gene052956.t1	AT1G05640	27.811	169	116	2	10	178	226	388	6.93e-11	64.7
MS.gene052956.t1	AT3G12360	23.744	438	236	16	5	372	73	482	1.01e-12	70.5
MS.gene052956.t1	AT1G10340	27.848	237	130	6	110	314	205	432	1.17e-12	70.5
MS.gene052956.t1	AT1G10340	27.848	237	130	6	110	314	201	428	1.18e-12	70.5
MS.gene052956.t1	AT5G60070	27.329	161	114	2	5	164	107	265	2.80e-12	68.9

Find 79 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTGAGAATATGTGCAATTT+TGG	0.152768	4.1:+83587386	None:intergenic
CAACGATTAACGAACCTTTA+AGG	0.155566	4.1:+83586825	None:intergenic
GAAGACCTTGTTACAGTTAA+AGG	0.166635	4.1:-83588768	MS.gene052956:CDS
TCAAGATGATCCATACATTT+TGG	0.169848	4.1:-83588988	MS.gene052956:CDS
TAGGATAGTTAAAGCCTTAA+AGG	0.173245	4.1:-83586839	MS.gene052956:CDS
GCCACCCAACAAGTACTTTA+AGG	0.181314	4.1:+83588589	None:intergenic
TTTACATACTGCTGCATCTA+TGG	0.232324	4.1:-83588931	MS.gene052956:CDS
AAGAGTACATTATTAAGTTT+TGG	0.272299	4.1:-83587441	MS.gene052956:CDS
AAGTACTGGCCGTATAAATT+TGG	0.292145	4.1:-83587520	MS.gene052956:CDS
TCTTTAACTCCAAATTTATA+CGG	0.310097	4.1:+83587511	None:intergenic
AGCGATACACCATATGTTCT+TGG	0.321709	4.1:+83588805	None:intergenic
ACTGATTTCCCAGCATTTCC+TGG	0.328259	4.1:+83587147	None:intergenic
AGGTTTCAAATTCATAATTT+CGG	0.346731	4.1:+83588890	None:intergenic
AAATTTGGAGTTAAAGAATC+TGG	0.348394	4.1:-83587505	MS.gene052956:CDS
CTTTCTAGTGGCTTCTCCAA+TGG	0.372396	4.1:-83587016	MS.gene052956:CDS
CTCAAAAGAAATACAAATAG+AGG	0.383728	4.1:-83588567	MS.gene052956:CDS
CAATCGGTCACTATTATTTG+TGG	0.388470	4.1:+83589058	None:intergenic
TTTCTAGTGGCTTCTCCAAT+GGG	0.397944	4.1:-83587015	MS.gene052956:CDS
TCACTTTCTCATATTGTGTT+CGG	0.413393	4.1:-83588685	MS.gene052956:CDS
CTTCTATTGTTGTTAAGTAC+TGG	0.414455	4.1:-83587534	MS.gene052956:CDS
CTTCATATTGCTGTTAAGAA+TGG	0.415776	4.1:-83588624	MS.gene052956:CDS
CCACCCAACAAGTACTTTAA+GGG	0.430505	4.1:+83588590	None:intergenic
CTTAACAGTCAAGTATTCAA+TGG	0.431472	4.1:+83588659	None:intergenic
TCTATACGCTCCAAAATGTA+TGG	0.437756	4.1:+83588978	None:intergenic
GCTATTGTTCTACTTGGTAA+TGG	0.440534	4.1:+83587039	None:intergenic
TGATCTCTGGAGTGCTTGCT+AGG	0.445586	4.1:+83587463	None:intergenic
TGTAAAGGAGTTTCAACAAA+TGG	0.448723	4.1:+83588948	None:intergenic
AGAAAGGCTATTGTTCTACT+TGG	0.451000	4.1:+83587033	None:intergenic
TCATGGAAATGACATGTGTA+GGG	0.452409	4.1:+83586950	None:intergenic
GAGGCCCTTAAAGTACTTGT+TGG	0.455376	4.1:-83588594	MS.gene052956:CDS
GCAAAACAACCAAGAACATA+TGG	0.456371	4.1:-83588814	MS.gene052956:CDS
TTTAGCTTCAAAGCAAATGA+AGG	0.467344	4.1:+83588870	None:intergenic
CCAAAATTGCACATATTCTC+AGG	0.473301	4.1:-83587386	MS.gene052956:CDS
CGCTAAAACTGATACAGAAA+AGG	0.475632	4.1:+83587077	None:intergenic
AGGCCCTTAAAGTACTTGTT+GGG	0.476641	4.1:-83588593	MS.gene052956:CDS
GCTGGGAAATCAGTCTTGTC+AGG	0.477588	4.1:-83587138	MS.gene052956:CDS
AATAATGTACTCTTGATCTC+TGG	0.484204	4.1:+83587450	None:intergenic
CTTGAGCAGCAGCTTTCAAT+CGG	0.487009	4.1:+83589042	None:intergenic
TAGTGGCTTCTCCAATGGGT+TGG	0.487019	4.1:-83587011	MS.gene052956:CDS
TAGTGCTGAGATATGCAAAA+TGG	0.487236	4.1:+83588491	None:intergenic
CCACAATAGTACATAATATG+AGG	0.498023	4.1:-83587356	MS.gene052956:CDS
CTCTTCCTTTAACTGTAACA+AGG	0.506203	4.1:+83588763	None:intergenic
GTTACAGTTAAAGGAAGAGA+AGG	0.514644	4.1:-83588759	MS.gene052956:CDS
GCAACCGCGATCTATCAATC+AGG	0.516979	4.1:-83587258	MS.gene052956:CDS
TTGAAAGCTGCTGCTCAAGC+AGG	0.522177	4.1:-83589038	MS.gene052956:CDS
TGTTAAGAATGGACAGTATG+AGG	0.523009	4.1:-83588613	MS.gene052956:CDS
TAGCAGAAACATAGCAGAAG+AGG	0.525955	4.1:-83587316	MS.gene052956:CDS
TGGCACATTTCTAGTAGCCA+TGG	0.526871	4.1:-83586911	MS.gene052956:CDS
ATCATGGAAATGACATGTGT+AGG	0.527018	4.1:+83586949	None:intergenic
CATCTTGAACTACAGTATAG+AGG	0.529126	4.1:+83589003	None:intergenic
AAATAGAGGGGCTAAAGACC+TGG	0.533263	4.1:-83588553	MS.gene052956:CDS
CCCTTAAAGTACTTGTTGGG+TGG	0.534099	4.1:-83588590	MS.gene052956:CDS
TCAAAAGAAATACAAATAGA+GGG	0.536770	4.1:-83588566	MS.gene052956:CDS
TTACATACTGCTGCATCTAT+GGG	0.537925	4.1:-83588930	MS.gene052956:CDS
ATTTGACTTGCAAAATGAAG+AGG	0.542519	4.1:+83588729	None:intergenic
CCTCATATTATGTACTATTG+TGG	0.545318	4.1:+83587356	None:intergenic
AGCACTAAGGAGTGACCCGC+AGG	0.545374	4.1:-83588475	MS.gene052956:intron
CATTGGAGAAGCCACTAGAA+AGG	0.552171	4.1:+83587017	None:intergenic
TTTCAAATTCATAATTTCGG+TGG	0.553407	4.1:+83588893	None:intergenic
TTTGCATGGCAAGATGGATG+GGG	0.554490	4.1:+83588832	None:intergenic
CAGAAGAGGAACGTAACACT+TGG	0.556269	4.1:-83587302	MS.gene052956:CDS
GCATCACTGACTTCTAAGCT+AGG	0.589972	4.1:+83587411	None:intergenic
ATAGATGCAGCAGTATGTAA+AGG	0.591635	4.1:+83588933	None:intergenic
CTAACCTGATAAATTCCACC+AGG	0.595881	4.1:+83587225	None:intergenic
CTAGCGATAAACCAACCCAT+TGG	0.598302	4.1:+83587000	None:intergenic
GGCGTTCAAACCATTGTCAT+CGG	0.608201	4.1:+83587197	None:intergenic
TAGAACAATAGCCTTTCTAG+TGG	0.615280	4.1:-83587028	MS.gene052956:CDS
AATGGTAGAAATGGAGGACG+TGG	0.615882	4.1:+83587176	None:intergenic
GTTAGTGCTACCGATGACAA+TGG	0.623826	4.1:-83587207	MS.gene052956:CDS
TGCTTAAACACAGAATTGCT+AGG	0.626393	4.1:-83586858	MS.gene052956:CDS
GCTTTGAAGCTAAATCAGCA+AGG	0.643501	4.1:-83588861	MS.gene052956:CDS
CAAAAGAAATACAAATAGAG+GGG	0.649379	4.1:-83588565	MS.gene052956:CDS
CAATCCTGATTGATAGATCG+CGG	0.654668	4.1:+83587254	None:intergenic
CATGGAAATGACATGTGTAG+GGG	0.661427	4.1:+83586951	None:intergenic
AGTGCTTGCTAGGTCTAATG+CGG	0.662825	4.1:+83587473	None:intergenic
AACCTGATAAATTCCACCAG+GGG	0.693447	4.1:+83587227	None:intergenic
TAACCTGATAAATTCCACCA+GGG	0.695982	4.1:+83587226	None:intergenic
ACCTGATAAATTCCACCAGG+GGG	0.706697	4.1:+83587228	None:intergenic
AAAACTGAAGTCAATCACCA+TGG	0.714383	4.1:+83586894	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGAAAATGTAATAACAAATA+TGG	+	chr4.1:83588209-83588228	None:intergenic	15.0%
!!!	TATATATAGTAGTTTTTCAT+AGG	+	chr4.1:83587888-83587907	None:intergenic	15.0%
!!	AAAAACGATGAATAAAATCA+TGG	+	chr4.1:83588966-83588985	None:intergenic	20.0%
!!	AAATTAACTGAAAAAACCAA+CGG	-	chr4.1:83587916-83587935	MS.gene052956:intron	20.0%
!!	AGACTAATTATAAATAAGGT+AGG	-	chr4.1:83588270-83588289	MS.gene052956:intron	20.0%
!!	AGGTTTCAAATTCATAATTT+CGG	+	chr4.1:83587009-83587028	None:intergenic	20.0%
!!	CGAAAGACTAATTATAAATA+AGG	-	chr4.1:83588266-83588285	MS.gene052956:intron	20.0%
!!	TCAAAAGAAATACAAATAGA+GGG	-	chr4.1:83587330-83587349	MS.gene052956:CDS	20.0%
!!	TCTTTAACTCCAAATTTATA+CGG	+	chr4.1:83588388-83588407	None:intergenic	20.0%
!!!	AAGAGTACATTATTAAGTTT+TGG	-	chr4.1:83588455-83588474	MS.gene052956:intron	20.0%
!!!	AGCTTTAAATACAAAAACAA+AGG	-	chr4.1:83587719-83587738	MS.gene052956:intron	20.0%
!!!	AGTACAAAATTTTAAATAGG+AGG	-	chr4.1:83587366-83587385	MS.gene052956:CDS	20.0%
!!!	ATGATTTTATTCATCGTTTT+TGG	-	chr4.1:83588965-83588984	MS.gene052956:CDS	20.0%
!!!	CTAGTTATTTATTTTCTATG+TGG	-	chr4.1:83588915-83588934	MS.gene052956:CDS	20.0%
!!!	GTACAAAATTTTAAATAGGA+GGG	-	chr4.1:83587367-83587386	MS.gene052956:CDS	20.0%
!!!	TATTTAAAATTTTGTACTCC+AGG	+	chr4.1:83587364-83587383	None:intergenic	20.0%
!!!	TGGAGTACAAAATTTTAAAT+AGG	-	chr4.1:83587363-83587382	MS.gene052956:CDS	20.0%
!	CAAAAGAAATACAAATAGAG+GGG	-	chr4.1:83587331-83587350	MS.gene052956:CDS	25.0%
!	CTCAAAAGAAATACAAATAG+AGG	-	chr4.1:83587329-83587348	MS.gene052956:CDS	25.0%
!	TAATTCGACATAAATCAACA+AGG	-	chr4.1:83587667-83587686	MS.gene052956:intron	25.0%
!	TTTCAAATTCATAATTTCGG+TGG	+	chr4.1:83587006-83587025	None:intergenic	25.0%
!!	AAATTTGGAGTTAAAGAATC+TGG	-	chr4.1:83588391-83588410	MS.gene052956:intron	25.0%
!!	TGTATCGTTCTTTAATTTCT+TGG	-	chr4.1:83588328-83588347	MS.gene052956:intron	25.0%
!!!	AATGTGTTCTTTTTTACGAA+TGG	+	chr4.1:83587457-83587476	None:intergenic	25.0%
!!!	GTTATTTATTTTCTATGTGG+AGG	-	chr4.1:83588918-83588937	MS.gene052956:CDS	25.0%
	AATAATGTACTCTTGATCTC+TGG	+	chr4.1:83588449-83588468	None:intergenic	30.0%
	AGTAAAAATGGTAGAAATGG+AGG	+	chr4.1:83588729-83588748	None:intergenic	30.0%
	ATGACTCTCATGTAGTTTAT+CGG	-	chr4.1:83587493-83587512	MS.gene052956:CDS	30.0%
	ATGTGGAAGACATATAGTTT+AGG	+	chr4.1:83587943-83587962	None:intergenic	30.0%
	CCACAATAGTACATAATATG+AGG	-	chr4.1:83588540-83588559	MS.gene052956:CDS	30.0%
	CCTCATATTATGTACTATTG+TGG	+	chr4.1:83588543-83588562	None:intergenic	30.0%
	CTTAACAGTCAAGTATTCAA+TGG	+	chr4.1:83587240-83587259	None:intergenic	30.0%
	TAGGATAGTTAAAGCCTTAA+AGG	-	chr4.1:83589057-83589076	MS.gene052956:CDS	30.0%
	TCACTTTCTCATATTGTGTT+CGG	-	chr4.1:83587211-83587230	MS.gene052956:CDS	30.0%
	TGGAGTAAAAATGGTAGAAA+TGG	+	chr4.1:83588732-83588751	None:intergenic	30.0%
	TGTAAAGGAGTTTCAACAAA+TGG	+	chr4.1:83586951-83586970	None:intergenic	30.0%
!	AATTTTAAATAGGAGGGATG+AGG	-	chr4.1:83587373-83587392	MS.gene052956:CDS	30.0%
!	ATCAAAAAGGAGTTTTCTTC+GGG	+	chr4.1:83588106-83588125	None:intergenic	30.0%
!	CATCAAAAAGGAGTTTTCTT+CGG	+	chr4.1:83588107-83588126	None:intergenic	30.0%
!	CTGAGAATATGTGCAATTTT+GGG	+	chr4.1:83588512-83588531	None:intergenic	30.0%
!	CTTCATATTGCTGTTAAGAA+TGG	-	chr4.1:83587272-83587291	MS.gene052956:CDS	30.0%
!	CTTCATTTTGCAAGTCAAAT+TGG	-	chr4.1:83587170-83587189	MS.gene052956:CDS	30.0%
!	CTTCTATTGTTGTTAAGTAC+TGG	-	chr4.1:83588362-83588381	MS.gene052956:intron	30.0%
!	CTTTAATTTCTTGGTAGAAC+AGG	-	chr4.1:83588337-83588356	MS.gene052956:intron	30.0%
!	TCAAGATGATCCATACATTT+TGG	-	chr4.1:83586908-83586927	MS.gene052956:CDS	30.0%
!	TTTAGCTTCAAAGCAAATGA+AGG	+	chr4.1:83587029-83587048	None:intergenic	30.0%
!!	ACATGAGAGTCATTTTCTTT+TGG	+	chr4.1:83587486-83587505	None:intergenic	30.0%
!!	ATGTAGTTTATCGGTGTTTT+TGG	-	chr4.1:83587502-83587521	MS.gene052956:CDS	30.0%
!!	ATTTCTACCATTTTTACTCC+AGG	-	chr4.1:83588731-83588750	MS.gene052956:CDS	30.0%
!!	ATTTGACTTGCAAAATGAAG+AGG	+	chr4.1:83587170-83587189	None:intergenic	30.0%
!!	GGAAAAGGTATTCATCAAAA+AGG	+	chr4.1:83588119-83588138	None:intergenic	30.0%
	AAAACTGAAGTCAATCACCA+TGG	+	chr4.1:83589005-83589024	None:intergenic	35.0%
	AAACAAACACTTGGAAACAC+AGG	-	chr4.1:83588145-83588164	MS.gene052956:intron	35.0%
	AGAAAGGCTATTGTTCTACT+TGG	+	chr4.1:83588866-83588885	None:intergenic	35.0%
	AGAGGATTTGAATTCCTTCT+AGG	-	chr4.1:83588012-83588031	MS.gene052956:intron	35.0%
	AGCATTTCCTGGAGTAAAAA+TGG	+	chr4.1:83588741-83588760	None:intergenic	35.0%
	ATAGATGCAGCAGTATGTAA+AGG	+	chr4.1:83586966-83586985	None:intergenic	35.0%
	ATCATGGAAATGACATGTGT+AGG	+	chr4.1:83588950-83588969	None:intergenic	35.0%
	CAATCGGTCACTATTATTTG+TGG	+	chr4.1:83586841-83586860	None:intergenic	35.0%
	CATCTTGAACTACAGTATAG+AGG	+	chr4.1:83586896-83586915	None:intergenic	35.0%
	CCAAAATTGCACATATTCTC+AGG	-	chr4.1:83588510-83588529	MS.gene052956:CDS	35.0%
	CGCTAAAACTGATACAGAAA+AGG	+	chr4.1:83588822-83588841	None:intergenic	35.0%
	CTCTTCCTTTAACTGTAACA+AGG	+	chr4.1:83587136-83587155	None:intergenic	35.0%
	GAAGACCTTGTTACAGTTAA+AGG	-	chr4.1:83587128-83587147	MS.gene052956:CDS	35.0%
	GAATTCAAATCCTCTCTGAA+GGG	+	chr4.1:83588007-83588026	None:intergenic	35.0%
	GCAAAACAACCAAGAACATA+TGG	-	chr4.1:83587082-83587101	MS.gene052956:CDS	35.0%
	GCTATTGTTCTACTTGGTAA+TGG	+	chr4.1:83588860-83588879	None:intergenic	35.0%
	GTTACAGTTAAAGGAAGAGA+AGG	-	chr4.1:83587137-83587156	MS.gene052956:CDS	35.0%
	TAACCTGATAAATTCCACCA+GGG	+	chr4.1:83588673-83588692	None:intergenic	35.0%
	TAGAACAATAGCCTTTCTAG+TGG	-	chr4.1:83588868-83588887	MS.gene052956:CDS	35.0%
	TCATGGAAATGACATGTGTA+GGG	+	chr4.1:83588949-83588968	None:intergenic	35.0%
	TCTATACGCTCCAAAATGTA+TGG	+	chr4.1:83586921-83586940	None:intergenic	35.0%
	TGCTTAAACACAGAATTGCT+AGG	-	chr4.1:83589038-83589057	MS.gene052956:CDS	35.0%
	TGTTAAGAATGGACAGTATG+AGG	-	chr4.1:83587283-83587302	MS.gene052956:CDS	35.0%
	TTACATACTGCTGCATCTAT+GGG	-	chr4.1:83586966-83586985	MS.gene052956:CDS	35.0%
	TTTACATACTGCTGCATCTA+TGG	-	chr4.1:83586965-83586984	MS.gene052956:CDS	35.0%
!	ATTTTTACTCCAGGAAATGC+TGG	-	chr4.1:83588740-83588759	MS.gene052956:CDS	35.0%
!	CCTGAGAATATGTGCAATTT+TGG	+	chr4.1:83588513-83588532	None:intergenic	35.0%
!	TAGTGCTGAGATATGCAAAA+TGG	+	chr4.1:83587408-83587427	None:intergenic	35.0%
!	TTTTGCATATCTCAGCACTA+AGG	-	chr4.1:83587408-83587427	MS.gene052956:CDS	35.0%
!	TTTTTACTCCAGGAAATGCT+GGG	-	chr4.1:83588741-83588760	MS.gene052956:CDS	35.0%
!!	AAGTACTGGCCGTATAAATT+TGG	-	chr4.1:83588376-83588395	MS.gene052956:intron	35.0%
!!	ATGTTCTTGGTTGTTTTGCA+TGG	+	chr4.1:83587081-83587100	None:intergenic	35.0%
!!	TGATTGACTTCAGTTTTGCA+AGG	-	chr4.1:83589008-83589027	MS.gene052956:CDS	35.0%
!!	TGTTTGTTTTCGACAGGAAA+AGG	+	chr4.1:83588134-83588153	None:intergenic	35.0%
	AACCTGATAAATTCCACCAG+GGG	+	chr4.1:83588672-83588691	None:intergenic	40.0%
	AATGGCATAAGATTACCTGC+GGG	+	chr4.1:83587439-83587458	None:intergenic	40.0%
	AGCGATACACCATATGTTCT+TGG	+	chr4.1:83587094-83587113	None:intergenic	40.0%
	CAATCCTGATTGATAGATCG+CGG	+	chr4.1:83588645-83588664	None:intergenic	40.0%
	CATGGAAATGACATGTGTAG+GGG	+	chr4.1:83588948-83588967	None:intergenic	40.0%
	CCACCCAACAAGTACTTTAA+GGG	+	chr4.1:83587309-83587328	None:intergenic	40.0%
	CTAACCTGATAAATTCCACC+AGG	+	chr4.1:83588674-83588693	None:intergenic	40.0%
	GAATGGCATAAGATTACCTG+CGG	+	chr4.1:83587440-83587459	None:intergenic	40.0%
	GGAATTCAAATCCTCTCTGA+AGG	+	chr4.1:83588008-83588027	None:intergenic	40.0%
	TAGCAGAAACATAGCAGAAG+AGG	-	chr4.1:83588580-83588599	MS.gene052956:CDS	40.0%
	TCCTGTCGAAAACAAACACT+TGG	-	chr4.1:83588136-83588155	MS.gene052956:intron	40.0%
	TGGAAAGCAAGTCAAGTATG+TGG	+	chr4.1:83587960-83587979	None:intergenic	40.0%
!	AGGCCCTTAAAGTACTTGTT+GGG	-	chr4.1:83587303-83587322	MS.gene052956:CDS	40.0%
!	AGTCTTTGAGTTCACCTAGA+AGG	+	chr4.1:83588029-83588048	None:intergenic	40.0%
!	GACATATAGTTTAGGACCGT+TGG	+	chr4.1:83587935-83587954	None:intergenic	40.0%
!	TTTCTAGTGGCTTCTCCAAT+GGG	-	chr4.1:83588881-83588900	MS.gene052956:CDS	40.0%
!	TTTTGCATGGCAAGATGGAT+GGG	+	chr4.1:83587068-83587087	None:intergenic	40.0%
!!	GCTTTGAAGCTAAATCAGCA+AGG	-	chr4.1:83587035-83587054	MS.gene052956:CDS	40.0%
!!	TCCAAGTGTTTGTTTTCGAC+AGG	+	chr4.1:83588140-83588159	None:intergenic	40.0%
	AAATAGAGGGGCTAAAGACC+TGG	-	chr4.1:83587343-83587362	MS.gene052956:CDS	45.0%
	AACTCTTCTCTCTCTTCGCT+TGG	-	chr4.1:83587814-83587833	MS.gene052956:intron	45.0%
	AATGGTAGAAATGGAGGACG+TGG	+	chr4.1:83588723-83588742	None:intergenic	45.0%
	ACCTGATAAATTCCACCAGG+GGG	+	chr4.1:83588671-83588690	None:intergenic	45.0%
	ATGATCTTGTCCCTTCAGAG+AGG	-	chr4.1:83587994-83588013	MS.gene052956:intron	45.0%
	CAGAAGAGGAACGTAACACT+TGG	-	chr4.1:83588594-83588613	MS.gene052956:CDS	45.0%
	CATTGGAGAAGCCACTAGAA+AGG	+	chr4.1:83588882-83588901	None:intergenic	45.0%
	CTAGCGATAAACCAACCCAT+TGG	+	chr4.1:83588899-83588918	None:intergenic	45.0%
	CTTGAGCAGCAGCTTTCAAT+CGG	+	chr4.1:83586857-83586876	None:intergenic	45.0%
	GCCACCCAACAAGTACTTTA+AGG	+	chr4.1:83587310-83587329	None:intergenic	45.0%
	GGCGTTCAAACCATTGTCAT+CGG	+	chr4.1:83588702-83588721	None:intergenic	45.0%
	GTTAGTGCTACCGATGACAA+TGG	-	chr4.1:83588689-83588708	MS.gene052956:CDS	45.0%
	TTTGCATGGCAAGATGGATG+GGG	+	chr4.1:83587067-83587086	None:intergenic	45.0%
!	AAGGAGTTTTCTTCGGGTGT+AGG	+	chr4.1:83588100-83588119	None:intergenic	45.0%
!	ACTGATTTCCCAGCATTTCC+TGG	+	chr4.1:83588752-83588771	None:intergenic	45.0%
!	AGTGCTTGCTAGGTCTAATG+CGG	+	chr4.1:83588426-83588445	None:intergenic	45.0%
!	CCCTTAAAGTACTTGTTGGG+TGG	-	chr4.1:83587306-83587325	MS.gene052956:CDS	45.0%
!	CTCTGAAGGGACAAGATCAT+AGG	+	chr4.1:83587994-83588013	None:intergenic	45.0%
!	CTTTCTAGTGGCTTCTCCAA+TGG	-	chr4.1:83588880-83588899	MS.gene052956:CDS	45.0%
!	GAGGCCCTTAAAGTACTTGT+TGG	-	chr4.1:83587302-83587321	MS.gene052956:CDS	45.0%
!	GTTTTGCATGGCAAGATGGA+TGG	+	chr4.1:83587069-83587088	None:intergenic	45.0%
!!	GCATCACTGACTTCTAAGCT+AGG	+	chr4.1:83588488-83588507	None:intergenic	45.0%
!!	GGTTGTTTTGCATGGCAAGA+TGG	+	chr4.1:83587073-83587092	None:intergenic	45.0%
!!	TGGCACATTTCTAGTAGCCA+TGG	-	chr4.1:83588985-83589004	MS.gene052956:CDS	45.0%
	GATCATAGGTCCAAGACACG+TGG	+	chr4.1:83587980-83587999	None:intergenic	50.0%
	GCAACCGCGATCTATCAATC+AGG	-	chr4.1:83588638-83588657	MS.gene052956:CDS	50.0%
	TAGTGGCTTCTCCAATGGGT+TGG	-	chr4.1:83588885-83588904	MS.gene052956:CDS	50.0%
	TCCCCCTGGTGGAATTTATC+AGG	-	chr4.1:83588667-83588686	MS.gene052956:CDS	50.0%
	TTGAAAGCTGCTGCTCAAGC+AGG	-	chr4.1:83586858-83586877	MS.gene052956:CDS	50.0%
!	GACTTGCTTTCCACGTGTCT+TGG	-	chr4.1:83587967-83587986	MS.gene052956:intron	50.0%
!	GCTGGGAAATCAGTCTTGTC+AGG	-	chr4.1:83588758-83588777	MS.gene052956:CDS	50.0%
!!	TGATCTCTGGAGTGCTTGCT+AGG	+	chr4.1:83588436-83588455	None:intergenic	50.0%
	CAATCAGGATTGAGTCCCCC+TGG	-	chr4.1:83588653-83588672	MS.gene052956:CDS	55.0%
	AGCACTAAGGAGTGACCCGC+AGG	-	chr4.1:83587421-83587440	MS.gene052956:CDS	60.0%
	TCAGGATTGAGTCCCCCTGG+TGG	-	chr4.1:83588656-83588675	MS.gene052956:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	83586831	83589087	83586831	ID=MS.gene052956
chr4.1	mRNA	83586831	83589087	83586831	ID=MS.gene052956.t1;Parent=MS.gene052956
chr4.1	exon	83588476	83589087	83588476	ID=MS.gene052956.t1.exon1;Parent=MS.gene052956.t1
chr4.1	CDS	83588476	83589087	83588476	ID=cds.MS.gene052956.t1;Parent=MS.gene052956.t1
chr4.1	exon	83586831	83587559	83586831	ID=MS.gene052956.t1.exon2;Parent=MS.gene052956.t1
chr4.1	CDS	83586831	83587559	83586831	ID=cds.MS.gene052956.t1;Parent=MS.gene052956.t1

Gene Sequence

>MS.gene052956

ATGAACACCACAAATAATAGTGACCGATTGAAAGCTGCTGCTCAAGCAGGTAATATAGATCTCCTCTATACTGTAGTTCAAGATGATCCATACATTTTGGAGCGTATAGATTTGATACCATTTGTTGAAACTCCTTTACATACTGCTGCATCTATGGGTCATCTTCAATTTGCCACCGAAATTATGAATTTGAAACCTTCATTTGCTTTGAAGCTAAATCAGCAAGGATTCAGCCCCATCCATCTTGCCATGCAAAACAACCAAGAACATATGGTGTATCGCTTTGTGTTTATCAATGAAGACCTTGTTACAGTTAAAGGAAGAGAAGGCTTAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAGATTGAAATTTTAGCTCACTTTCTCATATTGTGTTCGGAATCCATTGAATACTTGACTGTTAAGCGCGAGACTGCGCTTCATATTGCTGTTAAGAATGGACAGTATGAGGCCCTTAAAGTACTTGTTGGGTGGCTCAAAAGAAATACAAATAGAGGGGCTAAAGACCTGGAGTACAAAATTTTAAATAGGAGGGATGAGGAACACAACACCATTTTGCATATCTCAGCACTAAGGAGTGACCCGCAGGTAATCTTATGCCATTCGTAAAAAAGAACACATTTAGAATCCAAAAGAAAATGACTCTCATGTAGTTTATCGGTGTTTTTGGTGACATAAGTGTTAGTTTTAAAATGTTACTTGCATGATTAAACTAGAAATCTTAGAACATATTGTACAATGTTTTTTCAGAAATTGTTTGAATGTTCATCACATTCTTTGAGTTTTAATGTAATAAGATAAACATAATTGTCTAATTCGACATAAATCAACAAGGATGTGTATGACTTTAAGAGAAAAGTAAAAAGCTTTAAATACAAAAACAAAGGAACTAAAAAGAAAGTAATTTGCATTGCATTGCATTGATTAAAGTGTTCATCAAATCAGTTATATACATTCTTAACTCTTCTCTCTCTTCGCTTGGATAATTCAAGTGTGAAGAACTTTTGCATGTGATTTGTGACTCTGTTTTCCTATGAAAAACTACTATATATACGTAAAAAAAATTAACTGAAAAAACCAACGGTCCTAAACTATATGTCTTCCACATACTTGACTTGCTTTCCACGTGTCTTGGACCTATGATCTTGTCCCTTCAGAGAGGATTTGAATTCCTTCTAGGTGAACTCAAAGACTTGAAAATGTTAATTTACATCAAATCTTGTCGAATGCATTTGTATTCAACCTACACCCGAAGAAAACTCCTTTTTGATGAATACCTTTTCCTGTCGAAAACAAACACTTGGAAACACAGGTTAACACATGTTACTTTTTGTATTGTTGTAAATGATGACCATATTTGTTATTACATTTTCATGTTCTACTGATGCGTCATCTTTTTCATTGAAAAACACGAAAGACTAATTATAAATAAGGTAGGTTGTTTAGTTGATAACATGAATGATCTCTAACAATTGTATCGTTCTTTAATTTCTTGGTAGAACAGGCACTTCTATTGTTGTTAAGTACTGGCCGTATAAATTTGGAGTTAAAGAATCTGGAGAACGAAACCGCATTAGACCTAGCAAGCACTCCAGAGATCAAGAGTACATTATTAAGTTTTGGAGCAAAACCTAGCTTAGAAGTCAGTGATGCTCCCAAAATTGCACATATTCTCAGGTCAAAGACCACAATAGTACATAATATGAGGATTTTTAAAACTCGCATTAGCAGAAACATAGCAGAAGAGGAACGTAACACTTGGATGATAGTTGTGACTCTTGTTGCAACCGCGATCTATCAATCAGGATTGAGTCCCCCTGGTGGAATTTATCAGGTTAGTGCTACCGATGACAATGGTTTGAACGCCACGTCCTCCATTTCTACCATTTTTACTCCAGGAAATGCTGGGAAATCAGTCTTGTCAGGATATGAATTCATTTTGTTTTTATTTGTAAATATGTATTCCTTTTCTGTATCAGTTTTAGCGATATTTTTAATGATACCATTACCAAGTAGAACAATAGCCTTTCTAGTGGCTTCTCCAATGGGTTGGTTTATCGCTAGTTATTTATTTTCTATGTGGAGGATATCCCCTACACATGTCATTTCCATGATTTTATTCATCGTTTTTGGCACATTTCTAGTAGCCATGGTGATTGACTTCAGTTTTGCAAGGTACTCAATGCTTAAACACAGAATTGCTAGGATAGTTAAAGCCTTAAAGGTTCGTTAA

Protein sequence

>MS.gene052956.t1

MNTTNNSDRLKAAAQAGNIDLLYTVVQDDPYILERIDLIPFVETPLHTAASMGHLQFATEIMNLKPSFALKLNQQGFSPIHLAMQNNQEHMVYRFVFINEDLVTVKGREGLTPLHFASQIGEIEILAHFLILCSESIEYLTVKRETALHIAVKNGQYEALKVLVGWLKRNTNRGAKDLEYKILNRRDEEHNTILHISALRSDPQALLLLLSTGRINLELKNLENETALDLASTPEIKSTLLSFGAKPSLEVSDAPKIAHILRSKTTIVHNMRIFKTRISRNIAEEERNTWMIVVTLVATAIYQSGLSPPGGIYQVSATDDNGLNATSSISTIFTPGNAGKSVLSGYEFILFLFVNMYSFSVSVLAIFLMIPLPSRTIAFLVASPMGWFIASYLFSMWRISPTHVISMILFIVFGTFLVAMVIDFSFARYSMLKHRIARIVKALKVR