AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27223


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27223.t1 MTR_8g073260 84.770 348 45 2 1 346 1 342 0.0 602
MS.gene27223.t1 MTR_8g073275 68.802 359 39 5 51 346 1 349 6.93e-162 461
MS.gene27223.t1 MTR_3g016210 62.079 356 123 2 1 344 1 356 6.30e-157 447
MS.gene27223.t1 MTR_1g059930 66.134 313 106 0 7 319 10 322 2.92e-149 428
MS.gene27223.t1 MTR_8g072510 60.983 346 130 3 1 345 1 342 1.26e-148 426
MS.gene27223.t1 MTR_8g039620 62.209 344 123 3 5 345 10 349 2.45e-147 423
MS.gene27223.t1 MTR_7g451420 64.444 315 112 0 1 315 1 315 1.20e-144 412
MS.gene27223.t1 MTR_7g021090 58.140 344 135 3 1 344 1 335 1.22e-136 395
MS.gene27223.t1 MTR_8g062410 59.654 347 128 6 1 345 1 337 1.21e-129 379
MS.gene27223.t1 MTR_8g069880 58.140 344 138 4 5 347 3 341 8.12e-128 374
MS.gene27223.t1 MTR_8g068990 56.725 342 127 5 7 345 10 333 3.01e-127 372
MS.gene27223.t1 MTR_8g066670 58.960 346 136 4 1 345 1067 1407 3.94e-124 389
MS.gene27223.t1 MTR_8g467780 58.125 320 124 1 12 321 14 333 9.05e-124 363
MS.gene27223.t1 MTR_3g105650 55.305 311 131 2 6 309 2 311 9.72e-118 347
MS.gene27223.t1 MTR_8g040930 57.525 299 120 2 51 346 1 295 4.48e-115 339
MS.gene27223.t1 MTR_8g041240 57.525 299 120 2 51 346 1 295 4.48e-115 339
MS.gene27223.t1 MTR_1g069110 28.415 366 207 11 6 347 12 346 5.02e-29 117
MS.gene27223.t1 MTR_7g099580 26.480 321 163 9 12 316 15 278 6.14e-24 100
MS.gene27223.t1 MTR_2g101320 28.448 232 144 4 37 258 134 353 2.48e-19 89.7
MS.gene27223.t1 MTR_7g099570 27.586 203 133 3 12 209 12 205 2.33e-17 83.6
MS.gene27223.t1 MTR_7g117620 25.784 287 179 6 44 308 119 393 1.14e-15 78.6
MS.gene27223.t1 MTR_1g115575 25.685 292 176 6 44 309 169 445 2.13e-15 77.8
MS.gene27223.t1 MTR_2g096190 25.153 326 172 9 7 308 103 380 2.94e-15 77.0
MS.gene27223.t1 MTR_7g100430 24.031 387 214 14 5 322 68 443 5.43e-15 76.3
MS.gene27223.t1 MTR_2g101310 26.818 220 135 4 40 247 137 342 1.87e-14 74.7
MS.gene27223.t1 MTR_2g101310 26.818 220 135 4 40 247 137 342 3.12e-14 74.3
MS.gene27223.t1 MTR_4g062100 26.994 163 117 1 7 169 107 267 2.71e-13 71.2
MS.gene27223.t1 MTR_1g032100 24.444 315 191 9 45 329 95 392 3.79e-13 70.9
MS.gene27223.t1 MTR_7g100390 24.545 330 213 9 2 308 46 362 4.83e-12 67.4
MS.gene27223.t1 MTR_8g105260 23.103 290 186 5 44 308 101 378 7.43e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27223.t1 AT4G10720 43.695 341 178 3 6 338 2 336 3.57e-94 288
MS.gene27223.t1 AT4G10720 45.031 322 169 2 6 319 2 323 3.91e-94 286
MS.gene27223.t1 AT1G14500 41.139 316 177 2 6 312 2 317 4.59e-82 256
MS.gene27223.t1 AT1G14480 42.296 331 169 5 6 321 2 325 9.61e-79 248
MS.gene27223.t1 AT5G15500 42.812 313 171 3 12 316 9 321 3.05e-77 244
MS.gene27223.t1 AT5G54620 42.173 313 164 7 6 306 2 309 9.75e-75 237
MS.gene27223.t1 AT5G54610 39.016 305 177 3 6 303 2 304 1.27e-71 229
MS.gene27223.t1 AT1G14480 39.873 316 155 8 6 321 2 282 2.49e-60 199
MS.gene27223.t1 AT5G15500 37.209 215 127 3 110 316 1 215 1.56e-35 132
MS.gene27223.t1 AT5G51160 30.108 279 163 6 59 315 33 301 7.78e-35 132
MS.gene27223.t1 AT1G10340 22.967 418 218 9 5 328 37 444 4.10e-17 82.8
MS.gene27223.t1 AT1G10340 24.623 398 212 11 2 328 68 448 3.83e-16 80.1
MS.gene27223.t1 AT5G54700 29.661 236 128 8 95 326 17 218 8.32e-16 77.8
MS.gene27223.t1 AT3G09550 25.305 328 195 10 12 309 157 464 1.64e-15 78.2
MS.gene27223.t1 AT3G09550 25.305 328 195 10 12 309 150 457 1.71e-15 78.2
MS.gene27223.t1 AT3G09550 25.305 328 195 10 12 309 150 457 1.71e-15 78.2
MS.gene27223.t1 AT5G54710 28.514 249 131 10 95 312 219 451 1.82e-15 77.8
MS.gene27223.t1 AT5G54710 28.514 249 131 10 95 312 264 496 3.00e-15 77.4
MS.gene27223.t1 AT5G02620 25.430 291 178 6 45 308 95 373 6.14e-15 76.3
MS.gene27223.t1 AT5G02620 25.430 291 178 6 45 308 95 373 6.14e-15 76.3
MS.gene27223.t1 AT5G02620 25.430 291 178 6 45 308 95 373 6.14e-15 76.3
MS.gene27223.t1 AT4G03500 23.473 311 169 9 43 309 217 502 5.11e-14 73.6
MS.gene27223.t1 AT4G03500 23.473 311 169 9 43 309 194 479 5.20e-14 73.6
MS.gene27223.t1 AT4G03500 23.473 311 169 9 43 309 194 479 5.20e-14 73.6
MS.gene27223.t1 AT2G24600 24.557 395 216 13 2 328 68 448 6.77e-14 73.2
MS.gene27223.t1 AT2G24600 24.557 395 216 13 2 328 68 448 6.77e-14 73.2
MS.gene27223.t1 AT5G54700 26.710 307 150 10 24 326 20 255 7.37e-14 72.8
MS.gene27223.t1 AT5G50140 28.324 173 99 4 40 197 26 188 1.32e-13 72.0
MS.gene27223.t1 AT2G24600 24.802 379 203 13 2 312 68 432 1.81e-13 71.6
MS.gene27223.t1 AT2G24600 24.802 379 203 13 2 312 68 432 1.81e-13 71.6
MS.gene27223.t1 AT3G12360 24.267 375 209 12 5 309 62 431 1.98e-13 71.6
MS.gene27223.t1 AT3G12360 24.267 375 209 12 5 309 74 443 2.02e-13 71.6
MS.gene27223.t1 AT2G01680 22.903 310 202 5 44 328 97 394 4.31e-13 70.5
MS.gene27223.t1 AT1G34050 24.231 260 175 5 65 312 174 423 5.24e-13 70.5
MS.gene27223.t1 AT5G60070 23.102 303 210 6 7 308 110 390 8.22e-13 69.7
MS.gene27223.t1 AT4G03460 26.180 233 118 7 102 314 292 490 1.58e-12 68.9
MS.gene27223.t1 AT4G03460 25.726 241 125 7 94 314 252 458 1.71e-12 68.9
MS.gene27223.t1 AT2G31820 24.739 287 182 6 44 308 227 501 2.66e-12 68.2
MS.gene27223.t1 AT1G05640 25.087 287 181 6 44 308 191 465 4.06e-12 67.8
MS.gene27223.t1 AT4G03480 23.264 288 169 8 45 309 360 618 4.09e-11 64.7
MS.gene27223.t1 AT4G03480 23.264 288 169 8 45 309 357 615 4.38e-11 64.7
MS.gene27223.t1 AT4G03490 23.585 318 187 9 43 325 126 422 7.15e-11 63.9
MS.gene27223.t1 AT4G03490 23.585 318 187 9 43 325 136 432 7.28e-11 63.9
MS.gene27223.t1 AT5G02620 23.885 314 177 7 45 308 95 396 8.76e-11 63.5
MS.gene27223.t1 AT5G02620 23.885 314 177 7 45 308 95 396 8.76e-11 63.5

Find 64 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGTCAATTTCTCCATTT+TGG 0.130242 8.3:+28987701 None:intergenic
AAGATCAAATGTCACATTTA+TGG 0.143970 8.3:-28986294 MS.gene27223:CDS
CTTCATATTGCTTGCCAAAA+TGG 0.216347 8.3:-28987715 MS.gene27223:CDS
GTAACATCTTCAATAGAATT+TGG 0.238255 8.3:+28987655 None:intergenic
TGAGGAGGATCCATATGTTT+TGG 0.280435 8.3:-28987977 MS.gene27223:CDS
TCGATTTGTAGACATGAATA+AGG 0.306644 8.3:-28987776 MS.gene27223:CDS
TCTTAATTTATCTTCAAGTT+TGG 0.313621 8.3:+28986313 None:intergenic
ATCGAAGCACCATACTCTTT+TGG 0.329979 8.3:+28987794 None:intergenic
TAGAATTTGGACAAACAAAT+AGG 0.342540 8.3:+28987668 None:intergenic
CTCTTCATGTGTTGGTTGGT+TGG 0.373535 8.3:-28987579 MS.gene27223:CDS
CTAACTCCCTAGCACCTCTT+TGG 0.374660 8.3:+28987542 None:intergenic
CCGCTTTACCAACATATTCA+TGG 0.383859 8.3:+28986066 None:intergenic
TTGACCCCAAGTGGGTCAAT+AGG 0.389146 8.3:-28985963 None:intergenic
TCTATATATTCCAAAACATA+TGG 0.396171 8.3:+28987967 None:intergenic
GCAAAACAACCAAAAGAGTA+TGG 0.398876 8.3:-28987803 MS.gene27223:CDS
TTCACAGGCACTTCAATTGT+TGG 0.420014 8.3:-28986468 MS.gene27223:intron
CGCTTTACCAACATATTCAT+GGG 0.420928 8.3:+28986067 None:intergenic
TGTAGAGGAGTTTCAACAAA+TGG 0.445043 8.3:+28987937 None:intergenic
GAAATTAACACTCAACTGTA+TGG 0.449483 8.3:-28987518 MS.gene27223:CDS
AGCAGCAAGTGCCTCAATCA+AGG 0.453299 8.3:-28986387 MS.gene27223:CDS
TCTACATATAGCTGCATCAA+TGG 0.456263 8.3:-28987920 MS.gene27223:CDS
TAATTTATCTTCAAGTTTGG+AGG 0.465726 8.3:+28986316 None:intergenic
CCTTCTCTATACTTTAATTG+AGG 0.476987 8.3:-28987995 MS.gene27223:CDS
AAGGAACTTGTTAGAATCAA+AGG 0.479455 8.3:-28987757 MS.gene27223:CDS
GAAGCTCTTCATGTGTTGGT+TGG 0.480626 8.3:-28987583 MS.gene27223:CDS
TTTAGCTTCCATGCAAATGA+AGG 0.482700 8.3:+28987859 None:intergenic
GATTGAAACCTTCATTTGCA+TGG 0.488316 8.3:-28987867 MS.gene27223:CDS
TGCATTAGAATTCAAAGAAG+TGG 0.493665 8.3:+28986097 None:intergenic
GGTAAAGCGGTTATAAATGA+AGG 0.499284 8.3:-28986053 MS.gene27223:intron
CTACATATAGCTGCATCAAT+GGG 0.510700 8.3:-28987919 MS.gene27223:CDS
TTTCAATCTCATAATTTCAG+TGG 0.515270 8.3:+28987882 None:intergenic
CTCAACTGTATGGATGAGAA+TGG 0.521360 8.3:-28987508 MS.gene27223:CDS
ATCTCTAAACAATGACTCAA+AGG 0.522526 8.3:-28987464 MS.gene27223:intron
AAGGGTATATTACTAAGTGC+TGG 0.522957 8.3:-28986368 MS.gene27223:CDS
TCTCTATACTTTAATTGAGG+AGG 0.540844 8.3:-28987992 MS.gene27223:CDS
GTTAGAATCAAAGGAAGGGA+AGG 0.542029 8.3:-28987748 MS.gene27223:CDS
CAAATCGCCAAAGAGGTGCT+AGG 0.545825 8.3:-28987549 MS.gene27223:CDS
TAGTAATATACCCTTGATTG+AGG 0.548194 8.3:+28986376 None:intergenic
CAAATAGGAAATTAGCTACA+AGG 0.562537 8.3:+28987683 None:intergenic
GTTTGAAGCTCTTCATGTGT+TGG 0.565570 8.3:-28987587 MS.gene27223:CDS
AAATCGCCAAAGAGGTGCTA+GGG 0.573895 8.3:-28987548 MS.gene27223:CDS
CTACTTCAAACATGAACACA+AGG 0.582113 8.3:-28988062 None:intergenic
AACTTGTTAGAATCAAAGGA+AGG 0.583415 8.3:-28987753 MS.gene27223:CDS
CCTCAATTAAAGTATAGAGA+AGG 0.586410 8.3:+28987995 None:intergenic
TTACCTTGATAAACTCCACC+AGG 0.589003 8.3:+28986152 None:intergenic
GTGAAGTTTGCAGCTCAAGA+AGG 0.589706 8.3:-28988027 MS.gene27223:CDS
TATTGAAGATGTTACTGTGA+GGG 0.607181 8.3:-28987647 MS.gene27223:CDS
GCAGCAAGTGCCTCAATCAA+GGG 0.610729 8.3:-28986386 MS.gene27223:CDS
ACTTGTTAGAATCAAAGGAA+GGG 0.615429 8.3:-28987752 MS.gene27223:CDS
GCATGGAAGCTAAATCAACA+AGG 0.620083 8.3:-28987850 MS.gene27223:CDS
CCATGAATATGTTGGTAAAG+CGG 0.637764 8.3:-28986066 MS.gene27223:CDS
TTGAAGACAAATCGCCAAAG+AGG 0.638843 8.3:-28987556 MS.gene27223:CDS
ATTGATGCAGCTATATGTAG+AGG 0.639713 8.3:+28987922 None:intergenic
ATTGAAGATGTTACTGTGAG+GGG 0.652124 8.3:-28987646 MS.gene27223:CDS
CATGGAAGCTAAATCAACAA+GGG 0.665482 8.3:-28987849 MS.gene27223:CDS
TACCTTGATAAACTCCACCA+GGG 0.669953 8.3:+28986153 None:intergenic
GCTTTACCAACATATTCATG+GGG 0.680672 8.3:+28986068 None:intergenic
GAACACAAGGAATGATGACA+AGG 0.682364 8.3:-28988049 MS.gene27223:CDS
ACCTTGATAAACTCCACCAG+GGG 0.689637 8.3:+28986154 None:intergenic
CTATTGAAGATGTTACTGTG+AGG 0.691369 8.3:-28987648 MS.gene27223:CDS
AGTTTATCAAGGTAATGCTG+AGG 0.698798 8.3:-28986144 MS.gene27223:CDS
ACTATGCCCCATGAATATGT+TGG 0.700269 8.3:-28986074 MS.gene27223:CDS
CATTAGAAAAGATATATCAG+AGG 0.703068 8.3:-28986246 MS.gene27223:CDS
CCTTGATAAACTCCACCAGG+GGG 0.739127 8.3:+28986155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGTTAAATTATAATTGA+GGG + chr8.3:28987374-28987393 None:intergenic 10.0%
!! TATAAGTTAAATTATAATTG+AGG + chr8.3:28987375-28987394 None:intergenic 10.0%
!! CAAATTAAACTAGAAAAAGA+AGG + chr8.3:28986580-28986599 None:intergenic 20.0%
!! TCTATATATTCCAAAACATA+TGG + chr8.3:28986051-28986070 None:intergenic 20.0%
!!! TCTTAATTTATCTTCAAGTT+TGG + chr8.3:28987705-28987724 None:intergenic 20.0%
! AACTTTGAATGCAAAAAACT+TGG - chr8.3:28987583-28987602 MS.gene27223:CDS 25.0%
! AAGATCAAATGTCACATTTA+TGG - chr8.3:28987721-28987740 MS.gene27223:CDS 25.0%
! CATTAGAAAAGATATATCAG+AGG - chr8.3:28987769-28987788 MS.gene27223:CDS 25.0%
! CATTCTTAGAAATTGTGATT+AGG + chr8.3:28987325-28987344 None:intergenic 25.0%
! GAGTGTATTAAAAATTGACA+AGG + chr8.3:28987999-28988018 None:intergenic 25.0%
! GTAACATCTTCAATAGAATT+TGG + chr8.3:28986363-28986382 None:intergenic 25.0%
! TAGAATTTGGACAAACAAAT+AGG + chr8.3:28986350-28986369 None:intergenic 25.0%
! TCAAGATTCATATTGTGAAT+TGG + chr8.3:28987505-28987524 None:intergenic 25.0%
! TCATACCATCTTAAAAATCA+TGG + chr8.3:28986710-28986729 None:intergenic 25.0%
! TTTCAATCTCATAATTTCAG+TGG + chr8.3:28986136-28986155 None:intergenic 25.0%
!! ATAATTGAGGGTACAAAAAA+AGG + chr8.3:28987362-28987381 None:intergenic 25.0%
!! ATATATCTTTTCTAATGCGT+AGG + chr8.3:28987766-28987785 None:intergenic 25.0%
!! TAATTTATCTTCAAGTTTGG+AGG + chr8.3:28987702-28987721 None:intergenic 25.0%
ATCTCTAAACAATGACTCAA+AGG - chr8.3:28986551-28986570 MS.gene27223:intron 30.0%
ATGACAATGTGTTTATCAGT+GGG - chr8.3:28986635-28986654 MS.gene27223:intron 30.0%
CAAATAGGAAATTAGCTACA+AGG + chr8.3:28986335-28986354 None:intergenic 30.0%
CCATCTTAAAAATCATGGTT+AGG + chr8.3:28986705-28986724 None:intergenic 30.0%
CCTCAATTAAAGTATAGAGA+AGG + chr8.3:28986023-28986042 None:intergenic 30.0%
CCTTCTCTATACTTTAATTG+AGG - chr8.3:28986020-28986039 MS.gene27223:intron 30.0%
CTGACAATGTGTTTATAAGT+GGG - chr8.3:28987254-28987273 MS.gene27223:intron 30.0%
GAAATTAACACTCAACTGTA+TGG - chr8.3:28986497-28986516 MS.gene27223:intron 30.0%
GGTCAAAAGATATATTGTCA+TGG + chr8.3:28988038-28988057 None:intergenic 30.0%
TAGTAATATACCCTTGATTG+AGG + chr8.3:28987642-28987661 None:intergenic 30.0%
TATTGAAGATGTTACTGTGA+GGG - chr8.3:28986368-28986387 MS.gene27223:CDS 30.0%
TCTCTATACTTTAATTGAGG+AGG - chr8.3:28986023-28986042 MS.gene27223:intron 30.0%
TGACAATGTGTTTATAAGTG+GGG - chr8.3:28987255-28987274 MS.gene27223:intron 30.0%
TGCATTAGAATTCAAAGAAG+TGG + chr8.3:28987921-28987940 None:intergenic 30.0%
TTCATGTTATTCCAATTCAC+AGG - chr8.3:28987532-28987551 MS.gene27223:CDS 30.0%
! ACTTGTTAGAATCAAAGGAA+GGG - chr8.3:28986263-28986282 MS.gene27223:CDS 30.0%
! TCGATTTGTAGACATGAATA+AGG - chr8.3:28986239-28986258 MS.gene27223:CDS 30.0%
!! AACTTGTTAGAATCAAAGGA+AGG - chr8.3:28986262-28986281 MS.gene27223:CDS 30.0%
!! AAGGAACTTGTTAGAATCAA+AGG - chr8.3:28986258-28986277 MS.gene27223:CDS 30.0%
!! CCTAACCATGATTTTTAAGA+TGG - chr8.3:28986702-28986721 MS.gene27223:intron 30.0%
AGTTTATCAAGGTAATGCTG+AGG - chr8.3:28987871-28987890 MS.gene27223:CDS 35.0%
ATTGAAGATGTTACTGTGAG+GGG - chr8.3:28986369-28986388 MS.gene27223:CDS 35.0%
ATTGATGCAGCTATATGTAG+AGG + chr8.3:28986096-28986115 None:intergenic 35.0%
CATGACAATGTGTTTATCAG+TGG - chr8.3:28986634-28986653 MS.gene27223:intron 35.0%
CATGGAAGCTAAATCAACAA+GGG - chr8.3:28986166-28986185 MS.gene27223:CDS 35.0%
CCACTTATAAACACATTGTC+AGG + chr8.3:28987256-28987275 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG - chr8.3:28987253-28987272 MS.gene27223:intron 35.0%
CGCTTTACCAACATATTCAT+GGG + chr8.3:28987951-28987970 None:intergenic 35.0%
CTACATATAGCTGCATCAAT+GGG - chr8.3:28986096-28986115 MS.gene27223:CDS 35.0%
CTATTGAAGATGTTACTGTG+AGG - chr8.3:28986367-28986386 MS.gene27223:CDS 35.0%
CTTCATATTGCTTGCCAAAA+TGG - chr8.3:28986300-28986319 MS.gene27223:CDS 35.0%
GATTGAAACCTTCATTTGCA+TGG - chr8.3:28986148-28986167 MS.gene27223:CDS 35.0%
GCAAAACAACCAAAAGAGTA+TGG - chr8.3:28986212-28986231 MS.gene27223:CDS 35.0%
GCTTTACCAACATATTCATG+GGG + chr8.3:28987950-28987969 None:intergenic 35.0%
GGTAAAGCGGTTATAAATGA+AGG - chr8.3:28987962-28987981 MS.gene27223:CDS 35.0%
TCTACATATAGCTGCATCAA+TGG - chr8.3:28986095-28986114 MS.gene27223:CDS 35.0%
TGACAATGTGTTTATCAGTG+GGG - chr8.3:28986636-28986655 MS.gene27223:intron 35.0%
TGCTATAAGGTTTCCGTTAT+CGG - chr8.3:28986860-28986879 MS.gene27223:intron 35.0%
TGTAGAGGAGTTTCAACAAA+TGG + chr8.3:28986081-28986100 None:intergenic 35.0%
! AAGGGTATATTACTAAGTGC+TGG - chr8.3:28987647-28987666 MS.gene27223:CDS 35.0%
! ATAACGGAAACCTTATAGCA+TGG + chr8.3:28986860-28986879 None:intergenic 35.0%
! ATATATCTTTTGACCCCAAG+TGG - chr8.3:28988043-28988062 MS.gene27223:CDS 35.0%
! CAAGGTCAATTTCTCCATTT+TGG + chr8.3:28986317-28986336 None:intergenic 35.0%
! CCATGAATATGTTGGTAAAG+CGG - chr8.3:28987949-28987968 MS.gene27223:CDS 35.0%
! TATATCTTTTGACCCCAAGT+GGG - chr8.3:28988044-28988063 MS.gene27223:CDS 35.0%
! TTTAGCTTCCATGCAAATGA+AGG + chr8.3:28986159-28986178 None:intergenic 35.0%
! TTTTGGCAAGCAATATGAAG+AGG + chr8.3:28986300-28986319 None:intergenic 35.0%
!! ACTCTTTTGGTTGTTTTGCA+TGG + chr8.3:28986211-28986230 None:intergenic 35.0%
AAACCTTATAGCATGGTGTG+TGG + chr8.3:28986853-28986872 None:intergenic 40.0%
AACCTTATAGCCTATCTTGG+AGG + chr8.3:28986908-28986927 None:intergenic 40.0%
ACTATGCCCCATGAATATGT+TGG - chr8.3:28987941-28987960 MS.gene27223:CDS 40.0%
AGAGACTCTTCAAGATCCAT+TGG - chr8.3:28986729-28986748 MS.gene27223:intron 40.0%
ATGTCATCTCTTATCCGATG+TGG + chr8.3:28986617-28986636 None:intergenic 40.0%
CCGCTTTACCAACATATTCA+TGG + chr8.3:28987952-28987971 None:intergenic 40.0%
CTCAACTGTATGGATGAGAA+TGG - chr8.3:28986507-28986526 MS.gene27223:intron 40.0%
GAACACAAGGAATGATGACA+AGG - chr8.3:28985966-28985985 MS.gene27223:intron 40.0%
GACAATGTGTTTATCAGTGG+GGG - chr8.3:28986637-28986656 MS.gene27223:intron 40.0%
GAGACTCTTCAAGATCCATT+GGG - chr8.3:28986730-28986749 MS.gene27223:intron 40.0%
GCATGGAAGCTAAATCAACA+AGG - chr8.3:28986165-28986184 MS.gene27223:CDS 40.0%
GGAAACCTTATAGCCTATCT+TGG + chr8.3:28986911-28986930 None:intergenic 40.0%
GTAACACAACCCCATAAAAC+CGG + chr8.3:28987301-28987320 None:intergenic 40.0%
GTTAGAATCAAAGGAAGGGA+AGG - chr8.3:28986267-28986286 MS.gene27223:CDS 40.0%
TACCTTGATAAACTCCACCA+GGG + chr8.3:28987865-28987884 None:intergenic 40.0%
TCTGTTAAAGAGTCCCACAT+CGG - chr8.3:28986600-28986619 MS.gene27223:intron 40.0%
TGCTATAAGGTTTCCGCTAT+CGG - chr8.3:28986758-28986777 MS.gene27223:intron 40.0%
TGTCATCTCTTATCCGATGT+GGG + chr8.3:28986616-28986635 None:intergenic 40.0%
TGTGTTAAAGAGTCCCACAT+CGG - chr8.3:28987219-28987238 MS.gene27223:intron 40.0%
TTACCTTGATAAACTCCACC+AGG + chr8.3:28987866-28987885 None:intergenic 40.0%
TTCACAGGCACTTCAATTGT+TGG - chr8.3:28987547-28987566 MS.gene27223:CDS 40.0%
TTGAAGACAAATCGCCAAAG+AGG - chr8.3:28986459-28986478 MS.gene27223:CDS 40.0%
! ATAGCGGAAACCTTATAGCA+TGG + chr8.3:28986758-28986777 None:intergenic 40.0%
! CAATTGAAGTGCCTGTGAAT+TGG + chr8.3:28987546-28987565 None:intergenic 40.0%
! GTTTGAAGCTCTTCATGTGT+TGG - chr8.3:28986428-28986447 MS.gene27223:CDS 40.0%
! TGAGGAGGATCCATATGTTT+TGG - chr8.3:28986038-28986057 MS.gene27223:intron 40.0%
!! ATCGAAGCACCATACTCTTT+TGG + chr8.3:28986224-28986243 None:intergenic 40.0%
!! GCATCTTTGACTTTTGAGCT+AGG + chr8.3:28987680-28987699 None:intergenic 40.0%
!! TTTGGTTGTTTTGCATGGCA+AGG + chr8.3:28986206-28986225 None:intergenic 40.0%
ACCTCATAAGCCGATGTTGT+GGG - chr8.3:28986668-28986687 MS.gene27223:intron 45.0%
ACCTTGATAAACTCCACCAG+GGG + chr8.3:28987864-28987883 None:intergenic 45.0%
AGCCTCCTCCAAGATTCATT+AGG - chr8.3:28986798-28986817 MS.gene27223:intron 45.0%
AGCGGAAACCTTATAGCATG+TGG + chr8.3:28986756-28986775 None:intergenic 45.0%
AGGTCATCTCTTATCCGATG+TGG + chr8.3:28987236-28987255 None:intergenic 45.0%
ATTAGAGCCTCCTCCAAGAT+AGG - chr8.3:28986793-28986812 MS.gene27223:intron 45.0%
CTCCTCCAAGATAGGCTATA+AGG - chr8.3:28986903-28986922 MS.gene27223:intron 45.0%
CTTATAGCCTATCTTGGAGG+AGG + chr8.3:28986905-28986924 None:intergenic 45.0%
GGCTATAAGGTTTCCGCTAT+CGG - chr8.3:28986916-28986935 MS.gene27223:intron 45.0%
GGTCATCTCTTATCCGATGT+GGG + chr8.3:28987235-28987254 None:intergenic 45.0%
GTGAAGTTTGCAGCTCAAGA+AGG - chr8.3:28985988-28986007 MS.gene27223:intron 45.0%
TACCATCAGTGGTCCGATAA+CGG + chr8.3:28986876-28986895 None:intergenic 45.0%
TGCTATCAGGTTTCCGCTAT+CGG - chr8.3:28986826-28986845 MS.gene27223:intron 45.0%
! ATCTGGAGCGTGGACATAAA+TGG + chr8.3:28987156-28987175 None:intergenic 45.0%
! GAAGCTCTTCATGTGTTGGT+TGG - chr8.3:28986432-28986451 MS.gene27223:CDS 45.0%
! TTTTGCATGGCAAGGTGGAT+TGG + chr8.3:28986198-28986217 None:intergenic 45.0%
!! AAATCGCCAAAGAGGTGCTA+GGG - chr8.3:28986467-28986486 MS.gene27223:intron 45.0%
!! ACCTCTCAAGCCGGTTTTAT+GGG - chr8.3:28987288-28987307 MS.gene27223:intron 45.0%
!! CTCTTCATGTGTTGGTTGGT+TGG - chr8.3:28986436-28986455 MS.gene27223:CDS 45.0%
AATGGTGTGTGGTCCGATAG+CGG + chr8.3:28987000-28987019 None:intergenic 50.0%
AGCAGCAAGTGCCTCAATCA+AGG - chr8.3:28987628-28987647 MS.gene27223:CDS 50.0%
CACCTCATAAGCCGATGTTG+TGG - chr8.3:28986667-28986686 MS.gene27223:intron 50.0%
CCAACACAACCCCACAACAT+CGG + chr8.3:28986681-28986700 None:intergenic 50.0%
CCATTGGGCCACATGCTATA+AGG - chr8.3:28986745-28986764 MS.gene27223:intron 50.0%
CCTCATAAGCCGATGTTGTG+GGG - chr8.3:28986669-28986688 MS.gene27223:intron 50.0%
CCTTATAGCATGTGGCCCAA+TGG + chr8.3:28986748-28986767 None:intergenic 50.0%
CCTTGATAAACTCCACCAGG+GGG + chr8.3:28987863-28987882 None:intergenic 50.0%
CGATGTTGTGGGGTTGTGTT+GGG - chr8.3:28986679-28986698 MS.gene27223:intron 50.0%
CTAACTCCCTAGCACCTCTT+TGG + chr8.3:28986476-28986495 None:intergenic 50.0%
GCAGCAAGTGCCTCAATCAA+GGG - chr8.3:28987629-28987648 MS.gene27223:CDS 50.0%
GCAGGTGGCCTAATGAATCT+TGG + chr8.3:28986809-28986828 None:intergenic 50.0%
GCGTGGACATAAATGGTGTG+TGG + chr8.3:28987011-28987030 None:intergenic 50.0%
GGACCACACACCATGCTATA+AGG - chr8.3:28986847-28986866 MS.gene27223:intron 50.0%
GGCCTAATGAATCTTGGAGG+AGG + chr8.3:28986803-28986822 None:intergenic 50.0%
GGTGGCCTAATGAATCTTGG+AGG + chr8.3:28986806-28986825 None:intergenic 50.0%
TACCATCAGTGGTCCGATAG+CGG + chr8.3:28986774-28986793 None:intergenic 50.0%
TCAATCCTCACCTCTCAAGC+CGG - chr8.3:28987279-28987298 MS.gene27223:intron 50.0%
TCATTAGGCCACCTGCTATC+AGG - chr8.3:28986813-28986832 MS.gene27223:intron 50.0%
TTCCGTTATCGGACCACTGA+TGG - chr8.3:28986871-28986890 MS.gene27223:intron 50.0%
! GGAGGCTCTAATACCATCAG+TGG + chr8.3:28986785-28986804 None:intergenic 50.0%
!! CAAATCGCCAAAGAGGTGCT+AGG - chr8.3:28986466-28986485 MS.gene27223:intron 50.0%
!! CACCTCTCAAGCCGGTTTTA+TGG - chr8.3:28987287-28987306 MS.gene27223:intron 50.0%
!! CCTCTCAAGCCGGTTTTATG+GGG - chr8.3:28987289-28987308 MS.gene27223:intron 50.0%
!! GATAGCGGAAACCTGATAGC+AGG + chr8.3:28986827-28986846 None:intergenic 50.0%
!! GGTTGTTTTGCATGGCAAGG+TGG + chr8.3:28986203-28986222 None:intergenic 50.0%
!! TAAAACCGGCTTGAGAGGTG+AGG + chr8.3:28987287-28987306 None:intergenic 50.0%
AGCGGAAACCTGATAGCAGG+TGG + chr8.3:28986824-28986843 None:intergenic 55.0%
ATGGTGTGTGGTCCGATAGC+GGG + chr8.3:28986841-28986860 None:intergenic 55.0%
ATGTCCAGTCCTGGGTGTGA+GGG - chr8.3:28987174-28987193 MS.gene27223:intron 55.0%
CAATCAGCACTTAGTCCCCC+TGG - chr8.3:28987845-28987864 MS.gene27223:CDS 55.0%
CATGGTGTGTGGTCCGATAG+CGG + chr8.3:28986842-28986861 None:intergenic 55.0%
CCCCCTGGTGGAGTTTATCA+AGG - chr8.3:28987860-28987879 MS.gene27223:CDS 55.0%
CCGATGTTGTGGGGTTGTGT+TGG - chr8.3:28986678-28986697 MS.gene27223:intron 55.0%
TATGTCCACGCTCCCGCTAT+CGG - chr8.3:28987020-28987039 MS.gene27223:intron 55.0%
TTAACACACCCCTCACACCC+AGG + chr8.3:28987207-28987226 None:intergenic 55.0%
TTCCGCTATCGGACCACTGA+TGG - chr8.3:28986769-28986788 MS.gene27223:intron 55.0%
! AGCGGGAGCGTGGACATAAA+TGG + chr8.3:28987018-28987037 None:intergenic 55.0%
!! CCCCACAACATCGGCTTATG+AGG + chr8.3:28986672-28986691 None:intergenic 55.0%
!! CCCCATAAAACCGGCTTGAG+AGG + chr8.3:28987292-28987311 None:intergenic 55.0%
ACGCTCCAGATGTCCAGTCC+TGG - chr8.3:28987165-28987184 MS.gene27223:intron 60.0%
CACACCCAGGACTGGACATC+TGG + chr8.3:28987173-28987192 None:intergenic 60.0%
CGCTCCAGATGTCCAGTCCT+GGG - chr8.3:28987166-28987185 MS.gene27223:intron 60.0%
GATGTCCAGTCCTGGGTGTG+AGG - chr8.3:28987173-28987192 MS.gene27223:intron 60.0%
GGGTGTGTTCCTGGGTGTGA+GGG - chr8.3:28987195-28987214 MS.gene27223:intron 60.0%
GGTGTGTTCCTGGGTGTGAG+GGG - chr8.3:28987196-28987215 MS.gene27223:intron 60.0%
TCAGCACTTAGTCCCCCTGG+TGG - chr8.3:28987848-28987867 MS.gene27223:CDS 60.0%
TGTCCAGTCCTGGGTGTGAG+GGG - chr8.3:28987175-28987194 MS.gene27223:intron 60.0%
! AGGACTGGACATCTGGAGCG+TGG + chr8.3:28987166-28987185 None:intergenic 60.0%
! GGTGTGAGGGGTGTGTTCCT+GGG - chr8.3:28987187-28987206 MS.gene27223:intron 60.0%
ACACCCCTCACACCCAGGAC+TGG + chr8.3:28987181-28987200 None:intergenic 65.0%
GGAACACACCCCTCACACCC+AGG + chr8.3:28987186-28987205 None:intergenic 65.0%
GGGGTGTGTTCCTGGGTGTG+AGG - chr8.3:28987194-28987213 MS.gene27223:intron 65.0%
! GGGTGTGAGGGGTGTGTTCC+TGG - chr8.3:28987186-28987205 MS.gene27223:intron 65.0%
!! GTGGTCCGATAGCGGGAGCG+TGG + chr8.3:28987028-28987047 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 28985964 28988073 28985964 ID=MS.gene27223
chr8.3 mRNA 28985964 28988073 28985964 ID=MS.gene27223.t1;Parent=MS.gene27223
chr8.3 exon 28987465 28988073 28987465 ID=MS.gene27223.t1.exon1;Parent=MS.gene27223.t1
chr8.3 CDS 28987465 28988073 28987465 ID=cds.MS.gene27223.t1;Parent=MS.gene27223.t1
chr8.3 exon 28986054 28986483 28986054 ID=MS.gene27223.t1.exon2;Parent=MS.gene27223.t1
chr8.3 CDS 28986054 28986483 28986054 ID=cds.MS.gene27223.t1;Parent=MS.gene27223.t1
chr8.3 exon 28985964 28985974 28985964 ID=MS.gene27223.t1.exon3;Parent=MS.gene27223.t1
chr8.3 CDS 28985964 28985974 28985964 ID=cds.MS.gene27223.t1;Parent=MS.gene27223.t1
Gene Sequence

>MS.gene27223

ATGAACACAAGGAATGATGACAAGGTGAAGTTTGCAGCTCAAGAAGGTGATATAAACCTTCTCTATACTTTAATTGAGGAGGATCCATATGTTTTGGAATATATAGATTTGATTCCATTTGTTGAAACTCCTCTACATATAGCTGCATCAATGGGACATGTTCAATTTTCCACTGAAATTATGAGATTGAAACCTTCATTTGCATGGAAGCTAAATCAACAAGGGTTCAGTCCAATCCACCTTGCCATGCAAAACAACCAAAAGAGTATGGTGCTTCGATTTGTAGACATGAATAAGGAACTTGTTAGAATCAAAGGAAGGGAAGGTTTAACTCCTCTTCATATTGCTTGCCAAAATGGAGAAATTGACCTTGTAGCTAATTTCCTATTTGTTTGTCCAAATTCTATTGAAGATGTTACTGTGAGGGGTGAGACTGCACTTCATATTGCTGTAAGAAATAAACAGTTTGAAGCTCTTCATGTGTTGGTTGGTTGGTTGAAGACAAATCGCCAAAGAGGTGCTAGGGAGTTAGAGAAATTAACACTCAACTGTATGGATGAGAATGGAAATACTATTTTGCACATTTCATCTCTAAACAATGACTCAAAGGTATCCTTCTTTTTCTAGTTTAATTTGTCTGTTAAAGAGTCCCACATCGGATAAGAGATGACATGACAATGTGTTTATCAGTGGGGGCAATCTTCACCTCATAAGCCGATGTTGTGGGGTTGTGTTGGGCCTAACCATGATTTTTAAGATGGTATGAGAGACTCTTCAAGATCCATTGGGCCACATGCTATAAGGTTTCCGCTATCGGACCACTGATGGTATTAGAGCCTCCTCCAAGATTCATTAGGCCACCTGCTATCAGGTTTCCGCTATCGGACCACACACCATGCTATAAGGTTTCCGTTATCGGACCACTGATGGTATTAGAGCCTCCTCCAAGATAGGCTATAAGGTTTCCGCTATCGGACCACTGATGGTATTAGAGCCTCCTCCAAGATTCATTAGGCCACCTGCTATCAGGTTTCCGCTATCGGACCACACACCATTTATGTCCACGCTCCCGCTATCGGACCACACACCATGCTATAAGGTTTCCGCTATCGGACCACTGATGGTATTAGAGCCTCCTCCAAGATTCATTAGGCCACCTGCTATCAGGTTTCCGCTATCGGACCACACACCATTTATGTCCACGCTCCAGATGTCCAGTCCTGGGTGTGAGGGGTGTGTTCCTGGGTGTGAGGGGTGTGTTAAAGAGTCCCACATCGGATAAGAGATGACCTGACAATGTGTTTATAAGTGGGGTTCAATCCTCACCTCTCAAGCCGGTTTTATGGGGTTGTGTTACGCCTAATCACAATTTCTAAGAATGTCTTCTTTATACATCCTTTTTTTGTACCCTCAATTATAATTTAACTTATAACTTTGCTAAGTCACTTATTTTTAATTAAAAATGAATTTTTTTTATACGACTAATATATTTTACAATTCATAATAAAATTCAATTTACAAATCAATAAATAGCTATTCCAATTCACAATATGAATCTTGATTTGTTATTCATGTTATTCCAATTCACAGGCACTTCAATTGTTGGTAAAGACTAAGATAACTTTGAATGCAAAAAACTTGGAGAACTCAACAACATTAGACATAGCAGCAAGTGCCTCAATCAAGGGTATATTACTAAGTGCTGGAGCAAAACCTAGCTCAAAAGTCAAAGATGCCTCCAAACTTGAAGATAAATTAAGATCAAATGTCACATTTATGGACAAAATATTAGTTTATGTCCTACGCATTAGAAAAGATATATCAGAGGAACAACGCAACACTTTTCTAATAGTTGCTGCTCTTATTGCAACTGCTACATATCAATCAGCACTTAGTCCCCCTGGTGGAGTTTATCAAGGTAATGCTGAGGATCACAATAATAATGTGAAAAACACCACTTCTTTGAATTCTAATGCAACTATGCCCCATGAATATGTTGGTAAAGCGGTTATAAATGAAGGTGATTTTTTTTCCTTGTCAATTTTTAATACACTCTCACTTTTGTTATCAACCATGACAATATATCTTTTGACCCCAAGTGGGTCAATAG

Protein sequence

>MS.gene27223.t1

MNTRNDDKVKFAAQEGDINLLYTLIEEDPYVLEYIDLIPFVETPLHIAASMGHVQFSTEIMRLKPSFAWKLNQQGFSPIHLAMQNNQKSMVLRFVDMNKELVRIKGREGLTPLHIACQNGEIDLVANFLFVCPNSIEDVTVRGETALHIAVRNKQFEALHVLVGWLKTNRQRGARELEKLTLNCMDENGNTILHISSLNNDSKALQLLVKTKITLNAKNLENSTTLDIAASASIKGILLSAGAKPSSKVKDASKLEDKLRSNVTFMDKILVYVLRIRKDISEEQRNTFLIVAALIATATYQSALSPPGGVYQGNAEDHNNNVKNTTSLNSNATMPHEYVGKAVINEVGQ