Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27223.t1 | RHN41843.1 | 86.2 | 348 | 40 | 2 | 1 | 346 | 1 | 342 | 2.30E-104 | 389 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27223.t1 | Q8GYH5 | 49.8 | 305 | 144 | 3 | 6 | 303 | 2 | 304 | 6.6e-20 | 99.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27223.t1 | G7L8Q1 | 86.2 | 348 | 40 | 2 | 1 | 346 | 1 | 342 | 1.6e-104 | 389.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27223.t1 | MTR_8g073260 | 84.770 | 348 | 45 | 2 | 1 | 346 | 1 | 342 | 0.0 | 602 |
MS.gene27223.t1 | MTR_8g073275 | 68.802 | 359 | 39 | 5 | 51 | 346 | 1 | 349 | 6.93e-162 | 461 |
MS.gene27223.t1 | MTR_3g016210 | 62.079 | 356 | 123 | 2 | 1 | 344 | 1 | 356 | 6.30e-157 | 447 |
MS.gene27223.t1 | MTR_1g059930 | 66.134 | 313 | 106 | 0 | 7 | 319 | 10 | 322 | 2.92e-149 | 428 |
MS.gene27223.t1 | MTR_8g072510 | 60.983 | 346 | 130 | 3 | 1 | 345 | 1 | 342 | 1.26e-148 | 426 |
MS.gene27223.t1 | MTR_8g039620 | 62.209 | 344 | 123 | 3 | 5 | 345 | 10 | 349 | 2.45e-147 | 423 |
MS.gene27223.t1 | MTR_7g451420 | 64.444 | 315 | 112 | 0 | 1 | 315 | 1 | 315 | 1.20e-144 | 412 |
MS.gene27223.t1 | MTR_7g021090 | 58.140 | 344 | 135 | 3 | 1 | 344 | 1 | 335 | 1.22e-136 | 395 |
MS.gene27223.t1 | MTR_8g062410 | 59.654 | 347 | 128 | 6 | 1 | 345 | 1 | 337 | 1.21e-129 | 379 |
MS.gene27223.t1 | MTR_8g069880 | 58.140 | 344 | 138 | 4 | 5 | 347 | 3 | 341 | 8.12e-128 | 374 |
MS.gene27223.t1 | MTR_8g068990 | 56.725 | 342 | 127 | 5 | 7 | 345 | 10 | 333 | 3.01e-127 | 372 |
MS.gene27223.t1 | MTR_8g066670 | 58.960 | 346 | 136 | 4 | 1 | 345 | 1067 | 1407 | 3.94e-124 | 389 |
MS.gene27223.t1 | MTR_8g467780 | 58.125 | 320 | 124 | 1 | 12 | 321 | 14 | 333 | 9.05e-124 | 363 |
MS.gene27223.t1 | MTR_3g105650 | 55.305 | 311 | 131 | 2 | 6 | 309 | 2 | 311 | 9.72e-118 | 347 |
MS.gene27223.t1 | MTR_8g040930 | 57.525 | 299 | 120 | 2 | 51 | 346 | 1 | 295 | 4.48e-115 | 339 |
MS.gene27223.t1 | MTR_8g041240 | 57.525 | 299 | 120 | 2 | 51 | 346 | 1 | 295 | 4.48e-115 | 339 |
MS.gene27223.t1 | MTR_1g069110 | 28.415 | 366 | 207 | 11 | 6 | 347 | 12 | 346 | 5.02e-29 | 117 |
MS.gene27223.t1 | MTR_7g099580 | 26.480 | 321 | 163 | 9 | 12 | 316 | 15 | 278 | 6.14e-24 | 100 |
MS.gene27223.t1 | MTR_2g101320 | 28.448 | 232 | 144 | 4 | 37 | 258 | 134 | 353 | 2.48e-19 | 89.7 |
MS.gene27223.t1 | MTR_7g099570 | 27.586 | 203 | 133 | 3 | 12 | 209 | 12 | 205 | 2.33e-17 | 83.6 |
MS.gene27223.t1 | MTR_7g117620 | 25.784 | 287 | 179 | 6 | 44 | 308 | 119 | 393 | 1.14e-15 | 78.6 |
MS.gene27223.t1 | MTR_1g115575 | 25.685 | 292 | 176 | 6 | 44 | 309 | 169 | 445 | 2.13e-15 | 77.8 |
MS.gene27223.t1 | MTR_2g096190 | 25.153 | 326 | 172 | 9 | 7 | 308 | 103 | 380 | 2.94e-15 | 77.0 |
MS.gene27223.t1 | MTR_7g100430 | 24.031 | 387 | 214 | 14 | 5 | 322 | 68 | 443 | 5.43e-15 | 76.3 |
MS.gene27223.t1 | MTR_2g101310 | 26.818 | 220 | 135 | 4 | 40 | 247 | 137 | 342 | 1.87e-14 | 74.7 |
MS.gene27223.t1 | MTR_2g101310 | 26.818 | 220 | 135 | 4 | 40 | 247 | 137 | 342 | 3.12e-14 | 74.3 |
MS.gene27223.t1 | MTR_4g062100 | 26.994 | 163 | 117 | 1 | 7 | 169 | 107 | 267 | 2.71e-13 | 71.2 |
MS.gene27223.t1 | MTR_1g032100 | 24.444 | 315 | 191 | 9 | 45 | 329 | 95 | 392 | 3.79e-13 | 70.9 |
MS.gene27223.t1 | MTR_7g100390 | 24.545 | 330 | 213 | 9 | 2 | 308 | 46 | 362 | 4.83e-12 | 67.4 |
MS.gene27223.t1 | MTR_8g105260 | 23.103 | 290 | 186 | 5 | 44 | 308 | 101 | 378 | 7.43e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27223.t1 | AT4G10720 | 43.695 | 341 | 178 | 3 | 6 | 338 | 2 | 336 | 3.57e-94 | 288 |
MS.gene27223.t1 | AT4G10720 | 45.031 | 322 | 169 | 2 | 6 | 319 | 2 | 323 | 3.91e-94 | 286 |
MS.gene27223.t1 | AT1G14500 | 41.139 | 316 | 177 | 2 | 6 | 312 | 2 | 317 | 4.59e-82 | 256 |
MS.gene27223.t1 | AT1G14480 | 42.296 | 331 | 169 | 5 | 6 | 321 | 2 | 325 | 9.61e-79 | 248 |
MS.gene27223.t1 | AT5G15500 | 42.812 | 313 | 171 | 3 | 12 | 316 | 9 | 321 | 3.05e-77 | 244 |
MS.gene27223.t1 | AT5G54620 | 42.173 | 313 | 164 | 7 | 6 | 306 | 2 | 309 | 9.75e-75 | 237 |
MS.gene27223.t1 | AT5G54610 | 39.016 | 305 | 177 | 3 | 6 | 303 | 2 | 304 | 1.27e-71 | 229 |
MS.gene27223.t1 | AT1G14480 | 39.873 | 316 | 155 | 8 | 6 | 321 | 2 | 282 | 2.49e-60 | 199 |
MS.gene27223.t1 | AT5G15500 | 37.209 | 215 | 127 | 3 | 110 | 316 | 1 | 215 | 1.56e-35 | 132 |
MS.gene27223.t1 | AT5G51160 | 30.108 | 279 | 163 | 6 | 59 | 315 | 33 | 301 | 7.78e-35 | 132 |
MS.gene27223.t1 | AT1G10340 | 22.967 | 418 | 218 | 9 | 5 | 328 | 37 | 444 | 4.10e-17 | 82.8 |
MS.gene27223.t1 | AT1G10340 | 24.623 | 398 | 212 | 11 | 2 | 328 | 68 | 448 | 3.83e-16 | 80.1 |
MS.gene27223.t1 | AT5G54700 | 29.661 | 236 | 128 | 8 | 95 | 326 | 17 | 218 | 8.32e-16 | 77.8 |
MS.gene27223.t1 | AT3G09550 | 25.305 | 328 | 195 | 10 | 12 | 309 | 157 | 464 | 1.64e-15 | 78.2 |
MS.gene27223.t1 | AT3G09550 | 25.305 | 328 | 195 | 10 | 12 | 309 | 150 | 457 | 1.71e-15 | 78.2 |
MS.gene27223.t1 | AT3G09550 | 25.305 | 328 | 195 | 10 | 12 | 309 | 150 | 457 | 1.71e-15 | 78.2 |
MS.gene27223.t1 | AT5G54710 | 28.514 | 249 | 131 | 10 | 95 | 312 | 219 | 451 | 1.82e-15 | 77.8 |
MS.gene27223.t1 | AT5G54710 | 28.514 | 249 | 131 | 10 | 95 | 312 | 264 | 496 | 3.00e-15 | 77.4 |
MS.gene27223.t1 | AT5G02620 | 25.430 | 291 | 178 | 6 | 45 | 308 | 95 | 373 | 6.14e-15 | 76.3 |
MS.gene27223.t1 | AT5G02620 | 25.430 | 291 | 178 | 6 | 45 | 308 | 95 | 373 | 6.14e-15 | 76.3 |
MS.gene27223.t1 | AT5G02620 | 25.430 | 291 | 178 | 6 | 45 | 308 | 95 | 373 | 6.14e-15 | 76.3 |
MS.gene27223.t1 | AT4G03500 | 23.473 | 311 | 169 | 9 | 43 | 309 | 217 | 502 | 5.11e-14 | 73.6 |
MS.gene27223.t1 | AT4G03500 | 23.473 | 311 | 169 | 9 | 43 | 309 | 194 | 479 | 5.20e-14 | 73.6 |
MS.gene27223.t1 | AT4G03500 | 23.473 | 311 | 169 | 9 | 43 | 309 | 194 | 479 | 5.20e-14 | 73.6 |
MS.gene27223.t1 | AT2G24600 | 24.557 | 395 | 216 | 13 | 2 | 328 | 68 | 448 | 6.77e-14 | 73.2 |
MS.gene27223.t1 | AT2G24600 | 24.557 | 395 | 216 | 13 | 2 | 328 | 68 | 448 | 6.77e-14 | 73.2 |
MS.gene27223.t1 | AT5G54700 | 26.710 | 307 | 150 | 10 | 24 | 326 | 20 | 255 | 7.37e-14 | 72.8 |
MS.gene27223.t1 | AT5G50140 | 28.324 | 173 | 99 | 4 | 40 | 197 | 26 | 188 | 1.32e-13 | 72.0 |
MS.gene27223.t1 | AT2G24600 | 24.802 | 379 | 203 | 13 | 2 | 312 | 68 | 432 | 1.81e-13 | 71.6 |
MS.gene27223.t1 | AT2G24600 | 24.802 | 379 | 203 | 13 | 2 | 312 | 68 | 432 | 1.81e-13 | 71.6 |
MS.gene27223.t1 | AT3G12360 | 24.267 | 375 | 209 | 12 | 5 | 309 | 62 | 431 | 1.98e-13 | 71.6 |
MS.gene27223.t1 | AT3G12360 | 24.267 | 375 | 209 | 12 | 5 | 309 | 74 | 443 | 2.02e-13 | 71.6 |
MS.gene27223.t1 | AT2G01680 | 22.903 | 310 | 202 | 5 | 44 | 328 | 97 | 394 | 4.31e-13 | 70.5 |
MS.gene27223.t1 | AT1G34050 | 24.231 | 260 | 175 | 5 | 65 | 312 | 174 | 423 | 5.24e-13 | 70.5 |
MS.gene27223.t1 | AT5G60070 | 23.102 | 303 | 210 | 6 | 7 | 308 | 110 | 390 | 8.22e-13 | 69.7 |
MS.gene27223.t1 | AT4G03460 | 26.180 | 233 | 118 | 7 | 102 | 314 | 292 | 490 | 1.58e-12 | 68.9 |
MS.gene27223.t1 | AT4G03460 | 25.726 | 241 | 125 | 7 | 94 | 314 | 252 | 458 | 1.71e-12 | 68.9 |
MS.gene27223.t1 | AT2G31820 | 24.739 | 287 | 182 | 6 | 44 | 308 | 227 | 501 | 2.66e-12 | 68.2 |
MS.gene27223.t1 | AT1G05640 | 25.087 | 287 | 181 | 6 | 44 | 308 | 191 | 465 | 4.06e-12 | 67.8 |
MS.gene27223.t1 | AT4G03480 | 23.264 | 288 | 169 | 8 | 45 | 309 | 360 | 618 | 4.09e-11 | 64.7 |
MS.gene27223.t1 | AT4G03480 | 23.264 | 288 | 169 | 8 | 45 | 309 | 357 | 615 | 4.38e-11 | 64.7 |
MS.gene27223.t1 | AT4G03490 | 23.585 | 318 | 187 | 9 | 43 | 325 | 126 | 422 | 7.15e-11 | 63.9 |
MS.gene27223.t1 | AT4G03490 | 23.585 | 318 | 187 | 9 | 43 | 325 | 136 | 432 | 7.28e-11 | 63.9 |
MS.gene27223.t1 | AT5G02620 | 23.885 | 314 | 177 | 7 | 45 | 308 | 95 | 396 | 8.76e-11 | 63.5 |
MS.gene27223.t1 | AT5G02620 | 23.885 | 314 | 177 | 7 | 45 | 308 | 95 | 396 | 8.76e-11 | 63.5 |
Find 64 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGGTCAATTTCTCCATTT+TGG | 0.130242 | 8.3:+28987701 | None:intergenic |
AAGATCAAATGTCACATTTA+TGG | 0.143970 | 8.3:-28986294 | MS.gene27223:CDS |
CTTCATATTGCTTGCCAAAA+TGG | 0.216347 | 8.3:-28987715 | MS.gene27223:CDS |
GTAACATCTTCAATAGAATT+TGG | 0.238255 | 8.3:+28987655 | None:intergenic |
TGAGGAGGATCCATATGTTT+TGG | 0.280435 | 8.3:-28987977 | MS.gene27223:CDS |
TCGATTTGTAGACATGAATA+AGG | 0.306644 | 8.3:-28987776 | MS.gene27223:CDS |
TCTTAATTTATCTTCAAGTT+TGG | 0.313621 | 8.3:+28986313 | None:intergenic |
ATCGAAGCACCATACTCTTT+TGG | 0.329979 | 8.3:+28987794 | None:intergenic |
TAGAATTTGGACAAACAAAT+AGG | 0.342540 | 8.3:+28987668 | None:intergenic |
CTCTTCATGTGTTGGTTGGT+TGG | 0.373535 | 8.3:-28987579 | MS.gene27223:CDS |
CTAACTCCCTAGCACCTCTT+TGG | 0.374660 | 8.3:+28987542 | None:intergenic |
CCGCTTTACCAACATATTCA+TGG | 0.383859 | 8.3:+28986066 | None:intergenic |
TTGACCCCAAGTGGGTCAAT+AGG | 0.389146 | 8.3:-28985963 | None:intergenic |
TCTATATATTCCAAAACATA+TGG | 0.396171 | 8.3:+28987967 | None:intergenic |
GCAAAACAACCAAAAGAGTA+TGG | 0.398876 | 8.3:-28987803 | MS.gene27223:CDS |
TTCACAGGCACTTCAATTGT+TGG | 0.420014 | 8.3:-28986468 | MS.gene27223:intron |
CGCTTTACCAACATATTCAT+GGG | 0.420928 | 8.3:+28986067 | None:intergenic |
TGTAGAGGAGTTTCAACAAA+TGG | 0.445043 | 8.3:+28987937 | None:intergenic |
GAAATTAACACTCAACTGTA+TGG | 0.449483 | 8.3:-28987518 | MS.gene27223:CDS |
AGCAGCAAGTGCCTCAATCA+AGG | 0.453299 | 8.3:-28986387 | MS.gene27223:CDS |
TCTACATATAGCTGCATCAA+TGG | 0.456263 | 8.3:-28987920 | MS.gene27223:CDS |
TAATTTATCTTCAAGTTTGG+AGG | 0.465726 | 8.3:+28986316 | None:intergenic |
CCTTCTCTATACTTTAATTG+AGG | 0.476987 | 8.3:-28987995 | MS.gene27223:CDS |
AAGGAACTTGTTAGAATCAA+AGG | 0.479455 | 8.3:-28987757 | MS.gene27223:CDS |
GAAGCTCTTCATGTGTTGGT+TGG | 0.480626 | 8.3:-28987583 | MS.gene27223:CDS |
TTTAGCTTCCATGCAAATGA+AGG | 0.482700 | 8.3:+28987859 | None:intergenic |
GATTGAAACCTTCATTTGCA+TGG | 0.488316 | 8.3:-28987867 | MS.gene27223:CDS |
TGCATTAGAATTCAAAGAAG+TGG | 0.493665 | 8.3:+28986097 | None:intergenic |
GGTAAAGCGGTTATAAATGA+AGG | 0.499284 | 8.3:-28986053 | MS.gene27223:intron |
CTACATATAGCTGCATCAAT+GGG | 0.510700 | 8.3:-28987919 | MS.gene27223:CDS |
TTTCAATCTCATAATTTCAG+TGG | 0.515270 | 8.3:+28987882 | None:intergenic |
CTCAACTGTATGGATGAGAA+TGG | 0.521360 | 8.3:-28987508 | MS.gene27223:CDS |
ATCTCTAAACAATGACTCAA+AGG | 0.522526 | 8.3:-28987464 | MS.gene27223:intron |
AAGGGTATATTACTAAGTGC+TGG | 0.522957 | 8.3:-28986368 | MS.gene27223:CDS |
TCTCTATACTTTAATTGAGG+AGG | 0.540844 | 8.3:-28987992 | MS.gene27223:CDS |
GTTAGAATCAAAGGAAGGGA+AGG | 0.542029 | 8.3:-28987748 | MS.gene27223:CDS |
CAAATCGCCAAAGAGGTGCT+AGG | 0.545825 | 8.3:-28987549 | MS.gene27223:CDS |
TAGTAATATACCCTTGATTG+AGG | 0.548194 | 8.3:+28986376 | None:intergenic |
CAAATAGGAAATTAGCTACA+AGG | 0.562537 | 8.3:+28987683 | None:intergenic |
GTTTGAAGCTCTTCATGTGT+TGG | 0.565570 | 8.3:-28987587 | MS.gene27223:CDS |
AAATCGCCAAAGAGGTGCTA+GGG | 0.573895 | 8.3:-28987548 | MS.gene27223:CDS |
CTACTTCAAACATGAACACA+AGG | 0.582113 | 8.3:-28988062 | None:intergenic |
AACTTGTTAGAATCAAAGGA+AGG | 0.583415 | 8.3:-28987753 | MS.gene27223:CDS |
CCTCAATTAAAGTATAGAGA+AGG | 0.586410 | 8.3:+28987995 | None:intergenic |
TTACCTTGATAAACTCCACC+AGG | 0.589003 | 8.3:+28986152 | None:intergenic |
GTGAAGTTTGCAGCTCAAGA+AGG | 0.589706 | 8.3:-28988027 | MS.gene27223:CDS |
TATTGAAGATGTTACTGTGA+GGG | 0.607181 | 8.3:-28987647 | MS.gene27223:CDS |
GCAGCAAGTGCCTCAATCAA+GGG | 0.610729 | 8.3:-28986386 | MS.gene27223:CDS |
ACTTGTTAGAATCAAAGGAA+GGG | 0.615429 | 8.3:-28987752 | MS.gene27223:CDS |
GCATGGAAGCTAAATCAACA+AGG | 0.620083 | 8.3:-28987850 | MS.gene27223:CDS |
CCATGAATATGTTGGTAAAG+CGG | 0.637764 | 8.3:-28986066 | MS.gene27223:CDS |
TTGAAGACAAATCGCCAAAG+AGG | 0.638843 | 8.3:-28987556 | MS.gene27223:CDS |
ATTGATGCAGCTATATGTAG+AGG | 0.639713 | 8.3:+28987922 | None:intergenic |
ATTGAAGATGTTACTGTGAG+GGG | 0.652124 | 8.3:-28987646 | MS.gene27223:CDS |
CATGGAAGCTAAATCAACAA+GGG | 0.665482 | 8.3:-28987849 | MS.gene27223:CDS |
TACCTTGATAAACTCCACCA+GGG | 0.669953 | 8.3:+28986153 | None:intergenic |
GCTTTACCAACATATTCATG+GGG | 0.680672 | 8.3:+28986068 | None:intergenic |
GAACACAAGGAATGATGACA+AGG | 0.682364 | 8.3:-28988049 | MS.gene27223:CDS |
ACCTTGATAAACTCCACCAG+GGG | 0.689637 | 8.3:+28986154 | None:intergenic |
CTATTGAAGATGTTACTGTG+AGG | 0.691369 | 8.3:-28987648 | MS.gene27223:CDS |
AGTTTATCAAGGTAATGCTG+AGG | 0.698798 | 8.3:-28986144 | MS.gene27223:CDS |
ACTATGCCCCATGAATATGT+TGG | 0.700269 | 8.3:-28986074 | MS.gene27223:CDS |
CATTAGAAAAGATATATCAG+AGG | 0.703068 | 8.3:-28986246 | MS.gene27223:CDS |
CCTTGATAAACTCCACCAGG+GGG | 0.739127 | 8.3:+28986155 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAGTTAAATTATAATTGA+GGG | + | chr8.3:28987374-28987393 | None:intergenic | 10.0% |
!! | TATAAGTTAAATTATAATTG+AGG | + | chr8.3:28987375-28987394 | None:intergenic | 10.0% |
!! | CAAATTAAACTAGAAAAAGA+AGG | + | chr8.3:28986580-28986599 | None:intergenic | 20.0% |
!! | TCTATATATTCCAAAACATA+TGG | + | chr8.3:28986051-28986070 | None:intergenic | 20.0% |
!!! | TCTTAATTTATCTTCAAGTT+TGG | + | chr8.3:28987705-28987724 | None:intergenic | 20.0% |
! | AACTTTGAATGCAAAAAACT+TGG | - | chr8.3:28987583-28987602 | MS.gene27223:CDS | 25.0% |
! | AAGATCAAATGTCACATTTA+TGG | - | chr8.3:28987721-28987740 | MS.gene27223:CDS | 25.0% |
! | CATTAGAAAAGATATATCAG+AGG | - | chr8.3:28987769-28987788 | MS.gene27223:CDS | 25.0% |
! | CATTCTTAGAAATTGTGATT+AGG | + | chr8.3:28987325-28987344 | None:intergenic | 25.0% |
! | GAGTGTATTAAAAATTGACA+AGG | + | chr8.3:28987999-28988018 | None:intergenic | 25.0% |
! | GTAACATCTTCAATAGAATT+TGG | + | chr8.3:28986363-28986382 | None:intergenic | 25.0% |
! | TAGAATTTGGACAAACAAAT+AGG | + | chr8.3:28986350-28986369 | None:intergenic | 25.0% |
! | TCAAGATTCATATTGTGAAT+TGG | + | chr8.3:28987505-28987524 | None:intergenic | 25.0% |
! | TCATACCATCTTAAAAATCA+TGG | + | chr8.3:28986710-28986729 | None:intergenic | 25.0% |
! | TTTCAATCTCATAATTTCAG+TGG | + | chr8.3:28986136-28986155 | None:intergenic | 25.0% |
!! | ATAATTGAGGGTACAAAAAA+AGG | + | chr8.3:28987362-28987381 | None:intergenic | 25.0% |
!! | ATATATCTTTTCTAATGCGT+AGG | + | chr8.3:28987766-28987785 | None:intergenic | 25.0% |
!! | TAATTTATCTTCAAGTTTGG+AGG | + | chr8.3:28987702-28987721 | None:intergenic | 25.0% |
ATCTCTAAACAATGACTCAA+AGG | - | chr8.3:28986551-28986570 | MS.gene27223:intron | 30.0% | |
ATGACAATGTGTTTATCAGT+GGG | - | chr8.3:28986635-28986654 | MS.gene27223:intron | 30.0% | |
CAAATAGGAAATTAGCTACA+AGG | + | chr8.3:28986335-28986354 | None:intergenic | 30.0% | |
CCATCTTAAAAATCATGGTT+AGG | + | chr8.3:28986705-28986724 | None:intergenic | 30.0% | |
CCTCAATTAAAGTATAGAGA+AGG | + | chr8.3:28986023-28986042 | None:intergenic | 30.0% | |
CCTTCTCTATACTTTAATTG+AGG | - | chr8.3:28986020-28986039 | MS.gene27223:intron | 30.0% | |
CTGACAATGTGTTTATAAGT+GGG | - | chr8.3:28987254-28987273 | MS.gene27223:intron | 30.0% | |
GAAATTAACACTCAACTGTA+TGG | - | chr8.3:28986497-28986516 | MS.gene27223:intron | 30.0% | |
GGTCAAAAGATATATTGTCA+TGG | + | chr8.3:28988038-28988057 | None:intergenic | 30.0% | |
TAGTAATATACCCTTGATTG+AGG | + | chr8.3:28987642-28987661 | None:intergenic | 30.0% | |
TATTGAAGATGTTACTGTGA+GGG | - | chr8.3:28986368-28986387 | MS.gene27223:CDS | 30.0% | |
TCTCTATACTTTAATTGAGG+AGG | - | chr8.3:28986023-28986042 | MS.gene27223:intron | 30.0% | |
TGACAATGTGTTTATAAGTG+GGG | - | chr8.3:28987255-28987274 | MS.gene27223:intron | 30.0% | |
TGCATTAGAATTCAAAGAAG+TGG | + | chr8.3:28987921-28987940 | None:intergenic | 30.0% | |
TTCATGTTATTCCAATTCAC+AGG | - | chr8.3:28987532-28987551 | MS.gene27223:CDS | 30.0% | |
! | ACTTGTTAGAATCAAAGGAA+GGG | - | chr8.3:28986263-28986282 | MS.gene27223:CDS | 30.0% |
! | TCGATTTGTAGACATGAATA+AGG | - | chr8.3:28986239-28986258 | MS.gene27223:CDS | 30.0% |
!! | AACTTGTTAGAATCAAAGGA+AGG | - | chr8.3:28986262-28986281 | MS.gene27223:CDS | 30.0% |
!! | AAGGAACTTGTTAGAATCAA+AGG | - | chr8.3:28986258-28986277 | MS.gene27223:CDS | 30.0% |
!! | CCTAACCATGATTTTTAAGA+TGG | - | chr8.3:28986702-28986721 | MS.gene27223:intron | 30.0% |
AGTTTATCAAGGTAATGCTG+AGG | - | chr8.3:28987871-28987890 | MS.gene27223:CDS | 35.0% | |
ATTGAAGATGTTACTGTGAG+GGG | - | chr8.3:28986369-28986388 | MS.gene27223:CDS | 35.0% | |
ATTGATGCAGCTATATGTAG+AGG | + | chr8.3:28986096-28986115 | None:intergenic | 35.0% | |
CATGACAATGTGTTTATCAG+TGG | - | chr8.3:28986634-28986653 | MS.gene27223:intron | 35.0% | |
CATGGAAGCTAAATCAACAA+GGG | - | chr8.3:28986166-28986185 | MS.gene27223:CDS | 35.0% | |
CCACTTATAAACACATTGTC+AGG | + | chr8.3:28987256-28987275 | None:intergenic | 35.0% | |
CCTGACAATGTGTTTATAAG+TGG | - | chr8.3:28987253-28987272 | MS.gene27223:intron | 35.0% | |
CGCTTTACCAACATATTCAT+GGG | + | chr8.3:28987951-28987970 | None:intergenic | 35.0% | |
CTACATATAGCTGCATCAAT+GGG | - | chr8.3:28986096-28986115 | MS.gene27223:CDS | 35.0% | |
CTATTGAAGATGTTACTGTG+AGG | - | chr8.3:28986367-28986386 | MS.gene27223:CDS | 35.0% | |
CTTCATATTGCTTGCCAAAA+TGG | - | chr8.3:28986300-28986319 | MS.gene27223:CDS | 35.0% | |
GATTGAAACCTTCATTTGCA+TGG | - | chr8.3:28986148-28986167 | MS.gene27223:CDS | 35.0% | |
GCAAAACAACCAAAAGAGTA+TGG | - | chr8.3:28986212-28986231 | MS.gene27223:CDS | 35.0% | |
GCTTTACCAACATATTCATG+GGG | + | chr8.3:28987950-28987969 | None:intergenic | 35.0% | |
GGTAAAGCGGTTATAAATGA+AGG | - | chr8.3:28987962-28987981 | MS.gene27223:CDS | 35.0% | |
TCTACATATAGCTGCATCAA+TGG | - | chr8.3:28986095-28986114 | MS.gene27223:CDS | 35.0% | |
TGACAATGTGTTTATCAGTG+GGG | - | chr8.3:28986636-28986655 | MS.gene27223:intron | 35.0% | |
TGCTATAAGGTTTCCGTTAT+CGG | - | chr8.3:28986860-28986879 | MS.gene27223:intron | 35.0% | |
TGTAGAGGAGTTTCAACAAA+TGG | + | chr8.3:28986081-28986100 | None:intergenic | 35.0% | |
! | AAGGGTATATTACTAAGTGC+TGG | - | chr8.3:28987647-28987666 | MS.gene27223:CDS | 35.0% |
! | ATAACGGAAACCTTATAGCA+TGG | + | chr8.3:28986860-28986879 | None:intergenic | 35.0% |
! | ATATATCTTTTGACCCCAAG+TGG | - | chr8.3:28988043-28988062 | MS.gene27223:CDS | 35.0% |
! | CAAGGTCAATTTCTCCATTT+TGG | + | chr8.3:28986317-28986336 | None:intergenic | 35.0% |
! | CCATGAATATGTTGGTAAAG+CGG | - | chr8.3:28987949-28987968 | MS.gene27223:CDS | 35.0% |
! | TATATCTTTTGACCCCAAGT+GGG | - | chr8.3:28988044-28988063 | MS.gene27223:CDS | 35.0% |
! | TTTAGCTTCCATGCAAATGA+AGG | + | chr8.3:28986159-28986178 | None:intergenic | 35.0% |
! | TTTTGGCAAGCAATATGAAG+AGG | + | chr8.3:28986300-28986319 | None:intergenic | 35.0% |
!! | ACTCTTTTGGTTGTTTTGCA+TGG | + | chr8.3:28986211-28986230 | None:intergenic | 35.0% |
AAACCTTATAGCATGGTGTG+TGG | + | chr8.3:28986853-28986872 | None:intergenic | 40.0% | |
AACCTTATAGCCTATCTTGG+AGG | + | chr8.3:28986908-28986927 | None:intergenic | 40.0% | |
ACTATGCCCCATGAATATGT+TGG | - | chr8.3:28987941-28987960 | MS.gene27223:CDS | 40.0% | |
AGAGACTCTTCAAGATCCAT+TGG | - | chr8.3:28986729-28986748 | MS.gene27223:intron | 40.0% | |
ATGTCATCTCTTATCCGATG+TGG | + | chr8.3:28986617-28986636 | None:intergenic | 40.0% | |
CCGCTTTACCAACATATTCA+TGG | + | chr8.3:28987952-28987971 | None:intergenic | 40.0% | |
CTCAACTGTATGGATGAGAA+TGG | - | chr8.3:28986507-28986526 | MS.gene27223:intron | 40.0% | |
GAACACAAGGAATGATGACA+AGG | - | chr8.3:28985966-28985985 | MS.gene27223:intron | 40.0% | |
GACAATGTGTTTATCAGTGG+GGG | - | chr8.3:28986637-28986656 | MS.gene27223:intron | 40.0% | |
GAGACTCTTCAAGATCCATT+GGG | - | chr8.3:28986730-28986749 | MS.gene27223:intron | 40.0% | |
GCATGGAAGCTAAATCAACA+AGG | - | chr8.3:28986165-28986184 | MS.gene27223:CDS | 40.0% | |
GGAAACCTTATAGCCTATCT+TGG | + | chr8.3:28986911-28986930 | None:intergenic | 40.0% | |
GTAACACAACCCCATAAAAC+CGG | + | chr8.3:28987301-28987320 | None:intergenic | 40.0% | |
GTTAGAATCAAAGGAAGGGA+AGG | - | chr8.3:28986267-28986286 | MS.gene27223:CDS | 40.0% | |
TACCTTGATAAACTCCACCA+GGG | + | chr8.3:28987865-28987884 | None:intergenic | 40.0% | |
TCTGTTAAAGAGTCCCACAT+CGG | - | chr8.3:28986600-28986619 | MS.gene27223:intron | 40.0% | |
TGCTATAAGGTTTCCGCTAT+CGG | - | chr8.3:28986758-28986777 | MS.gene27223:intron | 40.0% | |
TGTCATCTCTTATCCGATGT+GGG | + | chr8.3:28986616-28986635 | None:intergenic | 40.0% | |
TGTGTTAAAGAGTCCCACAT+CGG | - | chr8.3:28987219-28987238 | MS.gene27223:intron | 40.0% | |
TTACCTTGATAAACTCCACC+AGG | + | chr8.3:28987866-28987885 | None:intergenic | 40.0% | |
TTCACAGGCACTTCAATTGT+TGG | - | chr8.3:28987547-28987566 | MS.gene27223:CDS | 40.0% | |
TTGAAGACAAATCGCCAAAG+AGG | - | chr8.3:28986459-28986478 | MS.gene27223:CDS | 40.0% | |
! | ATAGCGGAAACCTTATAGCA+TGG | + | chr8.3:28986758-28986777 | None:intergenic | 40.0% |
! | CAATTGAAGTGCCTGTGAAT+TGG | + | chr8.3:28987546-28987565 | None:intergenic | 40.0% |
! | GTTTGAAGCTCTTCATGTGT+TGG | - | chr8.3:28986428-28986447 | MS.gene27223:CDS | 40.0% |
! | TGAGGAGGATCCATATGTTT+TGG | - | chr8.3:28986038-28986057 | MS.gene27223:intron | 40.0% |
!! | ATCGAAGCACCATACTCTTT+TGG | + | chr8.3:28986224-28986243 | None:intergenic | 40.0% |
!! | GCATCTTTGACTTTTGAGCT+AGG | + | chr8.3:28987680-28987699 | None:intergenic | 40.0% |
!! | TTTGGTTGTTTTGCATGGCA+AGG | + | chr8.3:28986206-28986225 | None:intergenic | 40.0% |
ACCTCATAAGCCGATGTTGT+GGG | - | chr8.3:28986668-28986687 | MS.gene27223:intron | 45.0% | |
ACCTTGATAAACTCCACCAG+GGG | + | chr8.3:28987864-28987883 | None:intergenic | 45.0% | |
AGCCTCCTCCAAGATTCATT+AGG | - | chr8.3:28986798-28986817 | MS.gene27223:intron | 45.0% | |
AGCGGAAACCTTATAGCATG+TGG | + | chr8.3:28986756-28986775 | None:intergenic | 45.0% | |
AGGTCATCTCTTATCCGATG+TGG | + | chr8.3:28987236-28987255 | None:intergenic | 45.0% | |
ATTAGAGCCTCCTCCAAGAT+AGG | - | chr8.3:28986793-28986812 | MS.gene27223:intron | 45.0% | |
CTCCTCCAAGATAGGCTATA+AGG | - | chr8.3:28986903-28986922 | MS.gene27223:intron | 45.0% | |
CTTATAGCCTATCTTGGAGG+AGG | + | chr8.3:28986905-28986924 | None:intergenic | 45.0% | |
GGCTATAAGGTTTCCGCTAT+CGG | - | chr8.3:28986916-28986935 | MS.gene27223:intron | 45.0% | |
GGTCATCTCTTATCCGATGT+GGG | + | chr8.3:28987235-28987254 | None:intergenic | 45.0% | |
GTGAAGTTTGCAGCTCAAGA+AGG | - | chr8.3:28985988-28986007 | MS.gene27223:intron | 45.0% | |
TACCATCAGTGGTCCGATAA+CGG | + | chr8.3:28986876-28986895 | None:intergenic | 45.0% | |
TGCTATCAGGTTTCCGCTAT+CGG | - | chr8.3:28986826-28986845 | MS.gene27223:intron | 45.0% | |
! | ATCTGGAGCGTGGACATAAA+TGG | + | chr8.3:28987156-28987175 | None:intergenic | 45.0% |
! | GAAGCTCTTCATGTGTTGGT+TGG | - | chr8.3:28986432-28986451 | MS.gene27223:CDS | 45.0% |
! | TTTTGCATGGCAAGGTGGAT+TGG | + | chr8.3:28986198-28986217 | None:intergenic | 45.0% |
!! | AAATCGCCAAAGAGGTGCTA+GGG | - | chr8.3:28986467-28986486 | MS.gene27223:intron | 45.0% |
!! | ACCTCTCAAGCCGGTTTTAT+GGG | - | chr8.3:28987288-28987307 | MS.gene27223:intron | 45.0% |
!! | CTCTTCATGTGTTGGTTGGT+TGG | - | chr8.3:28986436-28986455 | MS.gene27223:CDS | 45.0% |
AATGGTGTGTGGTCCGATAG+CGG | + | chr8.3:28987000-28987019 | None:intergenic | 50.0% | |
AGCAGCAAGTGCCTCAATCA+AGG | - | chr8.3:28987628-28987647 | MS.gene27223:CDS | 50.0% | |
CACCTCATAAGCCGATGTTG+TGG | - | chr8.3:28986667-28986686 | MS.gene27223:intron | 50.0% | |
CCAACACAACCCCACAACAT+CGG | + | chr8.3:28986681-28986700 | None:intergenic | 50.0% | |
CCATTGGGCCACATGCTATA+AGG | - | chr8.3:28986745-28986764 | MS.gene27223:intron | 50.0% | |
CCTCATAAGCCGATGTTGTG+GGG | - | chr8.3:28986669-28986688 | MS.gene27223:intron | 50.0% | |
CCTTATAGCATGTGGCCCAA+TGG | + | chr8.3:28986748-28986767 | None:intergenic | 50.0% | |
CCTTGATAAACTCCACCAGG+GGG | + | chr8.3:28987863-28987882 | None:intergenic | 50.0% | |
CGATGTTGTGGGGTTGTGTT+GGG | - | chr8.3:28986679-28986698 | MS.gene27223:intron | 50.0% | |
CTAACTCCCTAGCACCTCTT+TGG | + | chr8.3:28986476-28986495 | None:intergenic | 50.0% | |
GCAGCAAGTGCCTCAATCAA+GGG | - | chr8.3:28987629-28987648 | MS.gene27223:CDS | 50.0% | |
GCAGGTGGCCTAATGAATCT+TGG | + | chr8.3:28986809-28986828 | None:intergenic | 50.0% | |
GCGTGGACATAAATGGTGTG+TGG | + | chr8.3:28987011-28987030 | None:intergenic | 50.0% | |
GGACCACACACCATGCTATA+AGG | - | chr8.3:28986847-28986866 | MS.gene27223:intron | 50.0% | |
GGCCTAATGAATCTTGGAGG+AGG | + | chr8.3:28986803-28986822 | None:intergenic | 50.0% | |
GGTGGCCTAATGAATCTTGG+AGG | + | chr8.3:28986806-28986825 | None:intergenic | 50.0% | |
TACCATCAGTGGTCCGATAG+CGG | + | chr8.3:28986774-28986793 | None:intergenic | 50.0% | |
TCAATCCTCACCTCTCAAGC+CGG | - | chr8.3:28987279-28987298 | MS.gene27223:intron | 50.0% | |
TCATTAGGCCACCTGCTATC+AGG | - | chr8.3:28986813-28986832 | MS.gene27223:intron | 50.0% | |
TTCCGTTATCGGACCACTGA+TGG | - | chr8.3:28986871-28986890 | MS.gene27223:intron | 50.0% | |
! | GGAGGCTCTAATACCATCAG+TGG | + | chr8.3:28986785-28986804 | None:intergenic | 50.0% |
!! | CAAATCGCCAAAGAGGTGCT+AGG | - | chr8.3:28986466-28986485 | MS.gene27223:intron | 50.0% |
!! | CACCTCTCAAGCCGGTTTTA+TGG | - | chr8.3:28987287-28987306 | MS.gene27223:intron | 50.0% |
!! | CCTCTCAAGCCGGTTTTATG+GGG | - | chr8.3:28987289-28987308 | MS.gene27223:intron | 50.0% |
!! | GATAGCGGAAACCTGATAGC+AGG | + | chr8.3:28986827-28986846 | None:intergenic | 50.0% |
!! | GGTTGTTTTGCATGGCAAGG+TGG | + | chr8.3:28986203-28986222 | None:intergenic | 50.0% |
!! | TAAAACCGGCTTGAGAGGTG+AGG | + | chr8.3:28987287-28987306 | None:intergenic | 50.0% |
AGCGGAAACCTGATAGCAGG+TGG | + | chr8.3:28986824-28986843 | None:intergenic | 55.0% | |
ATGGTGTGTGGTCCGATAGC+GGG | + | chr8.3:28986841-28986860 | None:intergenic | 55.0% | |
ATGTCCAGTCCTGGGTGTGA+GGG | - | chr8.3:28987174-28987193 | MS.gene27223:intron | 55.0% | |
CAATCAGCACTTAGTCCCCC+TGG | - | chr8.3:28987845-28987864 | MS.gene27223:CDS | 55.0% | |
CATGGTGTGTGGTCCGATAG+CGG | + | chr8.3:28986842-28986861 | None:intergenic | 55.0% | |
CCCCCTGGTGGAGTTTATCA+AGG | - | chr8.3:28987860-28987879 | MS.gene27223:CDS | 55.0% | |
CCGATGTTGTGGGGTTGTGT+TGG | - | chr8.3:28986678-28986697 | MS.gene27223:intron | 55.0% | |
TATGTCCACGCTCCCGCTAT+CGG | - | chr8.3:28987020-28987039 | MS.gene27223:intron | 55.0% | |
TTAACACACCCCTCACACCC+AGG | + | chr8.3:28987207-28987226 | None:intergenic | 55.0% | |
TTCCGCTATCGGACCACTGA+TGG | - | chr8.3:28986769-28986788 | MS.gene27223:intron | 55.0% | |
! | AGCGGGAGCGTGGACATAAA+TGG | + | chr8.3:28987018-28987037 | None:intergenic | 55.0% |
!! | CCCCACAACATCGGCTTATG+AGG | + | chr8.3:28986672-28986691 | None:intergenic | 55.0% |
!! | CCCCATAAAACCGGCTTGAG+AGG | + | chr8.3:28987292-28987311 | None:intergenic | 55.0% |
ACGCTCCAGATGTCCAGTCC+TGG | - | chr8.3:28987165-28987184 | MS.gene27223:intron | 60.0% | |
CACACCCAGGACTGGACATC+TGG | + | chr8.3:28987173-28987192 | None:intergenic | 60.0% | |
CGCTCCAGATGTCCAGTCCT+GGG | - | chr8.3:28987166-28987185 | MS.gene27223:intron | 60.0% | |
GATGTCCAGTCCTGGGTGTG+AGG | - | chr8.3:28987173-28987192 | MS.gene27223:intron | 60.0% | |
GGGTGTGTTCCTGGGTGTGA+GGG | - | chr8.3:28987195-28987214 | MS.gene27223:intron | 60.0% | |
GGTGTGTTCCTGGGTGTGAG+GGG | - | chr8.3:28987196-28987215 | MS.gene27223:intron | 60.0% | |
TCAGCACTTAGTCCCCCTGG+TGG | - | chr8.3:28987848-28987867 | MS.gene27223:CDS | 60.0% | |
TGTCCAGTCCTGGGTGTGAG+GGG | - | chr8.3:28987175-28987194 | MS.gene27223:intron | 60.0% | |
! | AGGACTGGACATCTGGAGCG+TGG | + | chr8.3:28987166-28987185 | None:intergenic | 60.0% |
! | GGTGTGAGGGGTGTGTTCCT+GGG | - | chr8.3:28987187-28987206 | MS.gene27223:intron | 60.0% |
ACACCCCTCACACCCAGGAC+TGG | + | chr8.3:28987181-28987200 | None:intergenic | 65.0% | |
GGAACACACCCCTCACACCC+AGG | + | chr8.3:28987186-28987205 | None:intergenic | 65.0% | |
GGGGTGTGTTCCTGGGTGTG+AGG | - | chr8.3:28987194-28987213 | MS.gene27223:intron | 65.0% | |
! | GGGTGTGAGGGGTGTGTTCC+TGG | - | chr8.3:28987186-28987205 | MS.gene27223:intron | 65.0% |
!! | GTGGTCCGATAGCGGGAGCG+TGG | + | chr8.3:28987028-28987047 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 28985964 | 28988073 | 28985964 | ID=MS.gene27223 |
chr8.3 | mRNA | 28985964 | 28988073 | 28985964 | ID=MS.gene27223.t1;Parent=MS.gene27223 |
chr8.3 | exon | 28987465 | 28988073 | 28987465 | ID=MS.gene27223.t1.exon1;Parent=MS.gene27223.t1 |
chr8.3 | CDS | 28987465 | 28988073 | 28987465 | ID=cds.MS.gene27223.t1;Parent=MS.gene27223.t1 |
chr8.3 | exon | 28986054 | 28986483 | 28986054 | ID=MS.gene27223.t1.exon2;Parent=MS.gene27223.t1 |
chr8.3 | CDS | 28986054 | 28986483 | 28986054 | ID=cds.MS.gene27223.t1;Parent=MS.gene27223.t1 |
chr8.3 | exon | 28985964 | 28985974 | 28985964 | ID=MS.gene27223.t1.exon3;Parent=MS.gene27223.t1 |
chr8.3 | CDS | 28985964 | 28985974 | 28985964 | ID=cds.MS.gene27223.t1;Parent=MS.gene27223.t1 |
Gene Sequence |
Protein sequence |