AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066501

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066501.t1 MTR_8g073260 83.668 349 48 3 1 347 1 342 0.0 590
MS.gene066501.t1 MTR_8g073275 68.333 360 40 6 51 347 1 349 1.82e-160 457
MS.gene066501.t1 MTR_3g016210 60.504 357 128 3 1 345 1 356 9.31e-151 432
MS.gene066501.t1 MTR_1g059930 65.495 313 108 0 7 319 10 322 1.06e-147 424
MS.gene066501.t1 MTR_8g072510 60.231 347 132 3 1 346 1 342 5.56e-146 420
MS.gene066501.t1 MTR_8g039620 61.739 345 124 3 5 346 10 349 4.11e-145 417
MS.gene066501.t1 MTR_7g451420 64.127 315 113 0 1 315 1 315 5.42e-143 407
MS.gene066501.t1 MTR_7g021090 57.391 345 137 3 1 345 1 335 3.45e-135 391
MS.gene066501.t1 MTR_8g062410 58.908 348 130 6 1 346 1 337 3.75e-128 375
MS.gene066501.t1 MTR_8g069880 57.681 345 139 4 5 348 3 341 2.69e-125 368
MS.gene066501.t1 MTR_8g068990 57.101 338 123 5 12 346 15 333 7.04e-125 367
MS.gene066501.t1 MTR_8g467780 57.500 320 126 1 12 321 14 333 1.30e-122 360
MS.gene066501.t1 MTR_8g066670 59.078 347 135 5 1 346 1067 1407 5.54e-122 384
MS.gene066501.t1 MTR_3g105650 54.662 311 133 2 6 309 2 311 6.63e-116 343
MS.gene066501.t1 MTR_8g040930 57.333 300 120 3 51 347 1 295 4.84e-113 333
MS.gene066501.t1 MTR_8g041240 57.333 300 120 3 51 347 1 295 4.84e-113 333
MS.gene066501.t1 MTR_1g069110 27.778 360 218 9 6 348 12 346 7.92e-29 116
MS.gene066501.t1 MTR_7g099580 27.244 312 154 9 21 316 24 278 9.11e-24 100
MS.gene066501.t1 MTR_2g101320 29.130 230 145 4 37 258 134 353 1.42e-19 90.5
MS.gene066501.t1 MTR_7g099570 26.877 253 161 5 12 249 12 255 2.81e-17 83.6
MS.gene066501.t1 MTR_1g115575 25.685 292 176 6 44 309 169 445 1.11e-15 78.6
MS.gene066501.t1 MTR_2g096190 26.074 326 169 10 7 308 103 380 5.19e-15 76.3
MS.gene066501.t1 MTR_7g100430 24.156 385 212 14 5 320 68 441 1.05e-14 75.5
MS.gene066501.t1 MTR_7g117620 25.436 287 180 6 44 308 119 393 1.29e-14 75.1
MS.gene066501.t1 MTR_2g101310 27.273 220 134 4 40 247 137 342 1.61e-14 74.7
MS.gene066501.t1 MTR_2g101310 27.273 220 134 4 40 247 137 342 2.83e-14 74.3
MS.gene066501.t1 MTR_1g032100 25.850 294 171 9 45 308 95 371 1.65e-13 71.6
MS.gene066501.t1 MTR_4g062100 28.485 165 112 3 7 169 107 267 4.43e-13 70.5
MS.gene066501.t1 MTR_7g100390 25.152 330 211 9 2 308 46 362 2.32e-12 68.2
MS.gene066501.t1 MTR_8g105260 23.448 290 185 5 44 308 101 378 1.70e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066501.t1 AT4G10720 44.479 326 173 2 6 323 2 327 8.57e-93 283
MS.gene066501.t1 AT4G10720 43.275 342 179 3 6 339 2 336 1.16e-92 284
MS.gene066501.t1 AT1G14500 40.506 316 179 2 6 312 2 317 2.28e-80 252
MS.gene066501.t1 AT1G14480 41.141 333 176 4 6 323 2 329 3.32e-76 241
MS.gene066501.t1 AT5G15500 41.433 321 180 3 12 324 9 329 1.82e-74 237
MS.gene066501.t1 AT5G54620 42.173 313 164 7 6 306 2 309 5.57e-73 233
MS.gene066501.t1 AT5G54610 39.016 305 177 3 6 303 2 304 3.67e-70 225
MS.gene066501.t1 AT1G14480 38.438 320 160 7 6 323 2 286 2.50e-58 194
MS.gene066501.t1 AT5G15500 36.323 223 134 3 110 324 1 223 5.01e-35 131
MS.gene066501.t1 AT5G51160 30.108 279 163 6 59 315 33 301 2.80e-34 131
MS.gene066501.t1 AT1G10340 23.632 402 203 9 5 312 37 428 9.47e-18 84.7
MS.gene066501.t1 AT1G10340 23.399 406 203 9 5 312 37 432 3.45e-17 83.2
MS.gene066501.t1 AT5G54700 32.057 209 104 8 108 312 30 204 7.03e-16 78.2
MS.gene066501.t1 AT3G09550 25.000 328 196 10 12 309 150 457 2.40e-15 77.4
MS.gene066501.t1 AT3G09550 25.000 328 196 10 12 309 150 457 2.40e-15 77.4
MS.gene066501.t1 AT3G09550 25.000 328 196 10 12 309 157 464 2.60e-15 77.4
MS.gene066501.t1 AT5G54710 28.916 249 130 10 95 312 219 451 3.30e-15 77.0
MS.gene066501.t1 AT5G54710 28.916 249 130 10 95 312 264 496 5.10e-15 76.6
MS.gene066501.t1 AT5G02620 25.430 291 178 6 45 308 95 373 3.64e-14 73.9
MS.gene066501.t1 AT5G02620 25.430 291 178 6 45 308 95 373 3.64e-14 73.9
MS.gene066501.t1 AT5G02620 25.430 291 178 6 45 308 95 373 3.64e-14 73.9
MS.gene066501.t1 AT4G03500 23.794 311 168 9 43 309 217 502 5.17e-14 73.6
MS.gene066501.t1 AT4G03500 23.794 311 168 9 43 309 194 479 6.36e-14 73.2
MS.gene066501.t1 AT4G03500 23.794 311 168 9 43 309 194 479 6.36e-14 73.2
MS.gene066501.t1 AT5G50140 27.317 205 123 5 40 228 26 220 2.12e-13 71.6
MS.gene066501.t1 AT2G01680 24.232 293 185 5 44 311 97 377 2.27e-13 71.6
MS.gene066501.t1 AT3G12360 24.533 375 208 12 5 309 74 443 3.55e-13 70.9
MS.gene066501.t1 AT1G34050 24.615 260 174 5 65 312 174 423 3.82e-13 70.9
MS.gene066501.t1 AT3G12360 24.533 375 208 12 5 309 62 431 3.98e-13 70.9
MS.gene066501.t1 AT5G60070 28.481 158 110 2 7 163 110 265 7.86e-13 69.7
MS.gene066501.t1 AT5G54700 26.557 305 149 10 12 312 8 241 2.01e-12 68.6
MS.gene066501.t1 AT4G03460 25.726 241 125 7 94 314 284 490 3.10e-12 68.2
MS.gene066501.t1 AT4G03460 24.609 256 139 7 94 329 252 473 3.24e-12 68.2
MS.gene066501.t1 AT1G05640 25.212 353 177 13 42 308 114 465 1.72e-11 65.9
MS.gene066501.t1 AT2G31820 24.390 287 183 6 44 308 227 501 3.28e-11 65.1
MS.gene066501.t1 AT2G24600 25.568 352 173 13 2 312 129 432 3.98e-11 64.7
MS.gene066501.t1 AT2G24600 25.568 352 173 13 2 312 129 432 3.98e-11 64.7
MS.gene066501.t1 AT1G07710 26.786 224 115 5 7 229 103 278 5.13e-11 64.3
MS.gene066501.t1 AT1G07710 26.786 224 115 5 7 229 103 278 5.13e-11 64.3
MS.gene066501.t1 AT2G24600 25.568 352 173 13 2 312 129 432 6.51e-11 63.9
MS.gene066501.t1 AT2G24600 25.568 352 173 13 2 312 129 432 6.51e-11 63.9

Find 65 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGTCAATTTCTCCATTT+TGG 0.130242 8.2:-31004544 None:intergenic
AAGATCAAATGTCACATTTA+TGG 0.143970 8.2:+31005642 MS.gene066501:CDS
CTTCATATTGCTTGCCAAAA+TGG 0.216347 8.2:+31004530 MS.gene066501:CDS
AAGGAACCTGTTAGAATTAA+AGG 0.218971 8.2:+31004488 MS.gene066501:CDS
GTAACATCTTCAATAGAATT+TGG 0.238255 8.2:-31004590 None:intergenic
TGAGGAGGATCCATATGTTT+TGG 0.280435 8.2:+31004268 MS.gene066501:CDS
TCCCTTCCTTTAATTCTAAC+AGG 0.300000 8.2:-31004494 None:intergenic
TCGATTTGTAGACATGAATA+AGG 0.306644 8.2:+31004469 MS.gene066501:CDS
TCTTAATTTATCTTCAAGTT+TGG 0.313621 8.2:-31005623 None:intergenic
ATCGAAGCACAATACTCTTT+TGG 0.320921 8.2:-31004451 None:intergenic
TAGAATTTGGACAAACAAAT+AGG 0.342540 8.2:-31004577 None:intergenic
CTCTTCATGTGTTGGTTGGT+TGG 0.373535 8.2:+31004666 MS.gene066501:CDS
CTAACTCCCTAGCACCTCTT+TGG 0.374660 8.2:-31004703 None:intergenic
CCGCTTTACCAACATATTCA+TGG 0.383859 8.2:-31005873 None:intergenic
TTGACCCCAAGTGGGTCAAT+AGG 0.389146 8.2:+31005976 MS.gene066501:intron
TCTATATATTCCAAAACATA+TGG 0.396171 8.2:-31004278 None:intergenic
TTCACAGGCACTTCAATTGT+TGG 0.420014 8.2:+31005468 MS.gene066501:intron
CGCTTTACCAACATATTCAT+GGG 0.420928 8.2:-31005872 None:intergenic
TGTAGAGGAGTTTCAACAAA+TGG 0.445043 8.2:-31004308 None:intergenic
GAAATTAACACTCAACTGTA+TGG 0.449483 8.2:+31004727 MS.gene066501:CDS
AGCAGCAAGTGCCTCAATCA+AGG 0.453299 8.2:+31005549 MS.gene066501:CDS
TCTACATATAGCTGCATCAA+TGG 0.456263 8.2:+31004325 MS.gene066501:CDS
TAATTTATCTTCAAGTTTGG+AGG 0.465726 8.2:-31005620 None:intergenic
CCTTCTCTATACTTTAATTG+AGG 0.476987 8.2:+31004250 MS.gene066501:CDS
TTTAGCTTCCATGCAAATGA+AGG 0.482700 8.2:-31004386 None:intergenic
GATTGAAACCTTCATTTGCA+TGG 0.488316 8.2:+31004378 MS.gene066501:CDS
TGCATTAGAATTCAAAGAAG+TGG 0.493256 8.2:-31005842 None:intergenic
GGTAAAGCGGTTATAAATGA+AGG 0.499284 8.2:+31005886 MS.gene066501:CDS
ACTCAACTGTATGGATGAGA+TGG 0.503634 8.2:+31004736 MS.gene066501:CDS
CTACATATAGCTGCATCAAT+GGG 0.510700 8.2:+31004326 MS.gene066501:CDS
TTTCAATCTCATAATTTCAG+TGG 0.515270 8.2:-31004363 None:intergenic
GAAGCTCTTCATGTGTTGGT+TGG 0.518701 8.2:+31004662 MS.gene066501:CDS
ATCTCTAAACAATGACTCAA+AGG 0.522526 8.2:+31004781 MS.gene066501:CDS
AAGGGTATATTACTAAGTGC+TGG 0.522957 8.2:+31005568 MS.gene066501:CDS
GTTAGAATTAAAGGAAGGGA+AGG 0.526351 8.2:+31004497 MS.gene066501:CDS
TCTCTATACTTTAATTGAGG+AGG 0.540844 8.2:+31004253 MS.gene066501:CDS
CAAATCGCCAAAGAGGTGCT+AGG 0.545825 8.2:+31004696 MS.gene066501:CDS
TAGTAATATACCCTTGATTG+AGG 0.548194 8.2:-31005560 None:intergenic
ATTTGAAGCTCTTCATGTGT+TGG 0.549522 8.2:+31004658 MS.gene066501:CDS
AACCTGTTAGAATTAAAGGA+AGG 0.549945 8.2:+31004492 MS.gene066501:CDS
CAAATAGGAAATTAGCTACA+AGG 0.562537 8.2:-31004562 None:intergenic
AAATCGCCAAAGAGGTGCTA+GGG 0.573895 8.2:+31004697 MS.gene066501:CDS
ACCTGTTAGAATTAAAGGAA+GGG 0.580554 8.2:+31004493 MS.gene066501:CDS
CTACTTCAAACATGAACACA+AGG 0.582113 8.2:+31004183 None:intergenic
TTACCTTGATAAACTCCACC+AGG 0.589003 8.2:-31005784 None:intergenic
GTGAAGTTTGCAGCTCAAGA+AGG 0.589706 8.2:+31004218 MS.gene066501:CDS
CTCAACTGTATGGATGAGAT+GGG 0.593407 8.2:+31004737 MS.gene066501:CDS
TATTGAAGATGTTACTGTGA+GGG 0.607181 8.2:+31004598 MS.gene066501:CDS
GCAGCAAGTGCCTCAATCAA+GGG 0.610729 8.2:+31005550 MS.gene066501:CDS
CCTCAATTAAAGTATAGAGA+AGG 0.616972 8.2:-31004250 None:intergenic
GCATGGAAGCTAAATCAACA+AGG 0.620083 8.2:+31004395 MS.gene066501:CDS
CCATGAATATGTTGGTAAAG+CGG 0.637764 8.2:+31005873 MS.gene066501:CDS
TTGAAGACAAATCGCCAAAG+AGG 0.638843 8.2:+31004689 MS.gene066501:CDS
ATTGATGCAGCTATATGTAG+AGG 0.639713 8.2:-31004323 None:intergenic
ATTGAAGATGTTACTGTGAG+GGG 0.652124 8.2:+31004599 MS.gene066501:CDS
CATGGAAGCTAAATCAACAA+GGG 0.665482 8.2:+31004396 MS.gene066501:CDS
TACCTTGATAAACTCCACCA+GGG 0.669953 8.2:-31005783 None:intergenic
GCTTTACCAACATATTCATG+GGG 0.680672 8.2:-31005871 None:intergenic
GAACACAAGGAATGATGACA+AGG 0.682364 8.2:+31004196 MS.gene066501:CDS
ACCTTGATAAACTCCACCAG+GGG 0.689637 8.2:-31005782 None:intergenic
CTATTGAAGATGTTACTGTG+AGG 0.691369 8.2:+31004597 MS.gene066501:CDS
ACAATGCCCCATGAATATGT+TGG 0.695124 8.2:+31005865 MS.gene066501:CDS
AGTTTATCAAGGTAATGCTG+AGG 0.698798 8.2:+31005792 MS.gene066501:CDS
CATTAGAAAAGATATATCAG+AGG 0.703068 8.2:+31005690 MS.gene066501:CDS
CCTTGATAAACTCCACCAGG+GGG 0.739127 8.2:-31005781 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGTTAAATTATAATTGA+GGG - chr8.2:31005296-31005315 None:intergenic 10.0%
!! TATAAGTTAAATTATAATTG+AGG - chr8.2:31005297-31005316 None:intergenic 10.0%
!! AAGTGTATTAAAAATTGACA+AGG - chr8.2:31005923-31005942 None:intergenic 20.0%
!! CAAATTAAACTAGAAAAAGA+AGG - chr8.2:31004810-31004829 None:intergenic 20.0%
!! TCTATATATTCCAAAACATA+TGG - chr8.2:31004281-31004300 None:intergenic 20.0%
!!! TCTTAATTTATCTTCAAGTT+TGG - chr8.2:31005626-31005645 None:intergenic 20.0%
! AACTTTGAATGCAAAAAACT+TGG + chr8.2:31005504-31005523 MS.gene066501:CDS 25.0%
! AAGATCAAATGTCACATTTA+TGG + chr8.2:31005642-31005661 MS.gene066501:CDS 25.0%
! CATTAGAAAAGATATATCAG+AGG + chr8.2:31005690-31005709 MS.gene066501:CDS 25.0%
! CATTCTTAGAAATTGTGATT+AGG - chr8.2:31005246-31005265 None:intergenic 25.0%
! GTAACATCTTCAATAGAATT+TGG - chr8.2:31004593-31004612 None:intergenic 25.0%
! TAGAATTTGGACAAACAAAT+AGG - chr8.2:31004580-31004599 None:intergenic 25.0%
! TCAAGATTCATATTGTGAAT+TGG - chr8.2:31005426-31005445 None:intergenic 25.0%
! TCATACCATCTTAAAAATCA+TGG - chr8.2:31004938-31004957 None:intergenic 25.0%
! TTTCAATCTCATAATTTCAG+TGG - chr8.2:31004366-31004385 None:intergenic 25.0%
!! ATATATCTTTTCTAATGCGT+AGG - chr8.2:31005687-31005706 None:intergenic 25.0%
!! TAATTGAGGGTACAAAAAAA+AGG - chr8.2:31005283-31005302 None:intergenic 25.0%
!! TAATTTATCTTCAAGTTTGG+AGG - chr8.2:31005623-31005642 None:intergenic 25.0%
AACCTGTTAGAATTAAAGGA+AGG + chr8.2:31004492-31004511 MS.gene066501:CDS 30.0%
AAGGAACCTGTTAGAATTAA+AGG + chr8.2:31004488-31004507 MS.gene066501:CDS 30.0%
ACCTGTTAGAATTAAAGGAA+GGG + chr8.2:31004493-31004512 MS.gene066501:CDS 30.0%
ATCTCTAAACAATGACTCAA+AGG + chr8.2:31004781-31004800 MS.gene066501:CDS 30.0%
ATGACAATGTGTTTATCAGT+AGG + chr8.2:31004863-31004882 MS.gene066501:intron 30.0%
CAAATAGGAAATTAGCTACA+AGG - chr8.2:31004565-31004584 None:intergenic 30.0%
CCATCTTAAAAATCATGGTT+AGG - chr8.2:31004933-31004952 None:intergenic 30.0%
CCTCAATTAAAGTATAGAGA+AGG - chr8.2:31004253-31004272 None:intergenic 30.0%
CCTTCTCTATACTTTAATTG+AGG + chr8.2:31004250-31004269 MS.gene066501:CDS 30.0%
CTGACAATGTGTTTATAAGT+GGG + chr8.2:31005175-31005194 MS.gene066501:intron 30.0%
GAAATTAACACTCAACTGTA+TGG + chr8.2:31004727-31004746 MS.gene066501:CDS 30.0%
GGTCAAAAGATATATTGTCA+TGG - chr8.2:31005962-31005981 None:intergenic 30.0%
TAGTAATATACCCTTGATTG+AGG - chr8.2:31005563-31005582 None:intergenic 30.0%
TATTGAAGATGTTACTGTGA+GGG + chr8.2:31004598-31004617 MS.gene066501:CDS 30.0%
TCTCTATACTTTAATTGAGG+AGG + chr8.2:31004253-31004272 MS.gene066501:CDS 30.0%
TGACAATGTGTTTATAAGTG+GGG + chr8.2:31005176-31005195 MS.gene066501:intron 30.0%
TGACAATGTGTTTATCAGTA+GGG + chr8.2:31004864-31004883 MS.gene066501:intron 30.0%
TGCATTAGAATTCAAAGAAG+TGG - chr8.2:31005845-31005864 None:intergenic 30.0%
TTCATGTTATTCCAATTCAC+AGG + chr8.2:31005453-31005472 MS.gene066501:intron 30.0%
! TCGATTTGTAGACATGAATA+AGG + chr8.2:31004469-31004488 MS.gene066501:CDS 30.0%
!! CCTAACCATGATTTTTAAGA+TGG + chr8.2:31004930-31004949 MS.gene066501:intron 30.0%
AAGATCCATCAAGATCCATT+GGG + chr8.2:31004968-31004987 MS.gene066501:intron 35.0%
AGTTTATCAAGGTAATGCTG+AGG + chr8.2:31005792-31005811 MS.gene066501:CDS 35.0%
ATTGAAGATGTTACTGTGAG+GGG + chr8.2:31004599-31004618 MS.gene066501:CDS 35.0%
ATTGATGCAGCTATATGTAG+AGG - chr8.2:31004326-31004345 None:intergenic 35.0%
CATGGAAGCTAAATCAACAA+GGG + chr8.2:31004396-31004415 MS.gene066501:CDS 35.0%
CCACTTATAAACACATTGTC+AGG - chr8.2:31005177-31005196 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG + chr8.2:31005174-31005193 MS.gene066501:intron 35.0%
CGCTTTACCAACATATTCAT+GGG - chr8.2:31005875-31005894 None:intergenic 35.0%
CTACATATAGCTGCATCAAT+GGG + chr8.2:31004326-31004345 MS.gene066501:CDS 35.0%
CTATTGAAGATGTTACTGTG+AGG + chr8.2:31004597-31004616 MS.gene066501:CDS 35.0%
CTTCATATTGCTTGCCAAAA+TGG + chr8.2:31004530-31004549 MS.gene066501:CDS 35.0%
GACAATGTGTTTATAAGTGG+GGG + chr8.2:31005177-31005196 MS.gene066501:intron 35.0%
GACAATGTGTTTATCAGTAG+GGG + chr8.2:31004865-31004884 MS.gene066501:intron 35.0%
GATTGAAACCTTCATTTGCA+TGG + chr8.2:31004378-31004397 MS.gene066501:CDS 35.0%
GCTTTACCAACATATTCATG+GGG - chr8.2:31005874-31005893 None:intergenic 35.0%
GGTAAAGCGGTTATAAATGA+AGG + chr8.2:31005886-31005905 MS.gene066501:CDS 35.0%
GTTAGAATTAAAGGAAGGGA+AGG + chr8.2:31004497-31004516 MS.gene066501:CDS 35.0%
TCCCTTCCTTTAATTCTAAC+AGG - chr8.2:31004497-31004516 None:intergenic 35.0%
TCTACATATAGCTGCATCAA+TGG + chr8.2:31004325-31004344 MS.gene066501:CDS 35.0%
TGTAGAGGAGTTTCAACAAA+TGG - chr8.2:31004311-31004330 None:intergenic 35.0%
! AAGGGTATATTACTAAGTGC+TGG + chr8.2:31005568-31005587 MS.gene066501:CDS 35.0%
! ATATATCTTTTGACCCCAAG+TGG + chr8.2:31005967-31005986 MS.gene066501:intron 35.0%
! ATCGAAGCACAATACTCTTT+TGG - chr8.2:31004454-31004473 None:intergenic 35.0%
! ATTTGAAGCTCTTCATGTGT+TGG + chr8.2:31004658-31004677 MS.gene066501:CDS 35.0%
! CAAGGTCAATTTCTCCATTT+TGG - chr8.2:31004547-31004566 None:intergenic 35.0%
! CCATGAATATGTTGGTAAAG+CGG + chr8.2:31005873-31005892 MS.gene066501:CDS 35.0%
! TATATCTTTTGACCCCAAGT+GGG + chr8.2:31005968-31005987 MS.gene066501:intron 35.0%
! TTTAGCTTCCATGCAAATGA+AGG - chr8.2:31004389-31004408 None:intergenic 35.0%
! TTTTGGCAAGCAATATGAAG+AGG - chr8.2:31004530-31004549 None:intergenic 35.0%
!! ACTCTTTTGGTTGTTTTGCA+TGG - chr8.2:31004441-31004460 None:intergenic 35.0%
ACAATGCCCCATGAATATGT+TGG + chr8.2:31005865-31005884 MS.gene066501:CDS 40.0%
ACTCAACTGTATGGATGAGA+TGG + chr8.2:31004736-31004755 MS.gene066501:CDS 40.0%
CAAGATCCATCAAGATCCAT+TGG + chr8.2:31004967-31004986 MS.gene066501:intron 40.0%
CCGCTTTACCAACATATTCA+TGG - chr8.2:31005876-31005895 None:intergenic 40.0%
CTAACACAACCCCATAAAAC+CGG - chr8.2:31005222-31005241 None:intergenic 40.0%
CTCAACTGTATGGATGAGAT+GGG + chr8.2:31004737-31004756 MS.gene066501:CDS 40.0%
GAACACAAGGAATGATGACA+AGG + chr8.2:31004196-31004215 MS.gene066501:CDS 40.0%
GCATGGAAGCTAAATCAACA+AGG + chr8.2:31004395-31004414 MS.gene066501:CDS 40.0%
TACCTTGATAAACTCCACCA+GGG - chr8.2:31005786-31005805 None:intergenic 40.0%
TGTGTTAAAGAGTCCCACAT+CGG + chr8.2:31005140-31005159 MS.gene066501:intron 40.0%
TTACCTTGATAAACTCCACC+AGG - chr8.2:31005787-31005806 None:intergenic 40.0%
TTCACAGGCACTTCAATTGT+TGG + chr8.2:31005468-31005487 MS.gene066501:intron 40.0%
TTGAAGACAAATCGCCAAAG+AGG + chr8.2:31004689-31004708 MS.gene066501:CDS 40.0%
! CAATTGAAGTGCCTGTGAAT+TGG - chr8.2:31005467-31005486 None:intergenic 40.0%
! GATCTTGATGGATCTTGAAG+AGG - chr8.2:31004964-31004983 None:intergenic 40.0%
! TGAGGAGGATCCATATGTTT+TGG + chr8.2:31004268-31004287 MS.gene066501:CDS 40.0%
!! GCATCTTTGACTTTTGAGCT+AGG - chr8.2:31005601-31005620 None:intergenic 40.0%
!! TTTGGTTGTTTTGCATGGCA+AGG - chr8.2:31004436-31004455 None:intergenic 40.0%
ACCTCATAAGCCGATGTTGT+GGG + chr8.2:31004896-31004915 MS.gene066501:intron 45.0%
ACCTTGATAAACTCCACCAG+GGG - chr8.2:31005785-31005804 None:intergenic 45.0%
AGCCTCCTCCAAGATTCATT+AGG + chr8.2:31005036-31005055 MS.gene066501:intron 45.0%
AGGTCATCTCTTATCCGATG+TGG - chr8.2:31005157-31005176 None:intergenic 45.0%
ATGTCATCTCTTATCCGACG+TGG - chr8.2:31004845-31004864 None:intergenic 45.0%
CTAACACAACCCCACAACAT+CGG - chr8.2:31004909-31004928 None:intergenic 45.0%
GGTCATCTCTTATCCGATGT+GGG - chr8.2:31005156-31005175 None:intergenic 45.0%
GTGAAGTTTGCAGCTCAAGA+AGG + chr8.2:31004218-31004237 MS.gene066501:CDS 45.0%
TGCTATCAGGTTTCCGCTAT+CGG + chr8.2:31005064-31005083 MS.gene066501:intron 45.0%
TGCTGTAAGGTTTCCGCTAT+CGG + chr8.2:31004996-31005015 MS.gene066501:intron 45.0%
TGTCATCTCTTATCCGACGT+GGG - chr8.2:31004844-31004863 None:intergenic 45.0%
TGTCTTAAAGAGTCCCACGT+CGG + chr8.2:31004828-31004847 MS.gene066501:intron 45.0%
! ATCTGGAGCGTGGACATAAA+TGG - chr8.2:31005098-31005117 None:intergenic 45.0%
! GAAGCTCTTCATGTGTTGGT+TGG + chr8.2:31004662-31004681 MS.gene066501:CDS 45.0%
! TTTTGCATGGCAAGGTGGAT+TGG - chr8.2:31004428-31004447 None:intergenic 45.0%
!! AAATCGCCAAAGAGGTGCTA+GGG + chr8.2:31004697-31004716 MS.gene066501:CDS 45.0%
!! ACCTCTCAAGCCGGTTTTAT+GGG + chr8.2:31005209-31005228 MS.gene066501:intron 45.0%
!! CGGTTTTATGGGGTTGTGTT+AGG + chr8.2:31005220-31005239 MS.gene066501:intron 45.0%
!! CTCTTCATGTGTTGGTTGGT+TGG + chr8.2:31004666-31004685 MS.gene066501:CDS 45.0%
AATGGTGTGTGGTCCGATAG+CGG - chr8.2:31005080-31005099 None:intergenic 50.0%
ACAATCCTCACCTCTCAAGC+CGG + chr8.2:31005200-31005219 MS.gene066501:intron 50.0%
AGCAGCAAGTGCCTCAATCA+AGG + chr8.2:31005549-31005568 MS.gene066501:CDS 50.0%
CACCTCATAAGCCGATGTTG+TGG + chr8.2:31004895-31004914 MS.gene066501:intron 50.0%
CCTCATAAGCCGATGTTGTG+GGG + chr8.2:31004897-31004916 MS.gene066501:intron 50.0%
CCTTGATAAACTCCACCAGG+GGG - chr8.2:31005784-31005803 None:intergenic 50.0%
CGATGTTGTGGGGTTGTGTT+AGG + chr8.2:31004907-31004926 MS.gene066501:intron 50.0%
CTAACTCCCTAGCACCTCTT+TGG - chr8.2:31004706-31004725 None:intergenic 50.0%
GCAGCAAGTGCCTCAATCAA+GGG + chr8.2:31005550-31005569 MS.gene066501:CDS 50.0%
GCAGGTGGCCTAATGAATCT+TGG - chr8.2:31005047-31005066 None:intergenic 50.0%
GCGTGGACATAAATGGTGTG+TGG - chr8.2:31005091-31005110 None:intergenic 50.0%
GGCCTAATGAATCTTGGAGG+AGG - chr8.2:31005041-31005060 None:intergenic 50.0%
GGTGGCCTAATGAATCTTGG+AGG - chr8.2:31005044-31005063 None:intergenic 50.0%
TACCATCAGTGGTCCGATAG+CGG - chr8.2:31005012-31005031 None:intergenic 50.0%
TCATTAGGCCACCTGCTATC+AGG + chr8.2:31005051-31005070 MS.gene066501:intron 50.0%
! GGAGGCTCTAATACCATCAG+TGG - chr8.2:31005023-31005042 None:intergenic 50.0%
!! CAAATCGCCAAAGAGGTGCT+AGG + chr8.2:31004696-31004715 MS.gene066501:CDS 50.0%
!! CACCTCTCAAGCCGGTTTTA+TGG + chr8.2:31005208-31005227 MS.gene066501:intron 50.0%
!! CCTCTCAAGCCGGTTTTATG+GGG + chr8.2:31005210-31005229 MS.gene066501:intron 50.0%
!! GATAGCGGAAACCTGATAGC+AGG - chr8.2:31005065-31005084 None:intergenic 50.0%
!! GATAGCGGAAACCTTACAGC+AGG - chr8.2:31004997-31005016 None:intergenic 50.0%
!! GGTTGTTTTGCATGGCAAGG+TGG - chr8.2:31004433-31004452 None:intergenic 50.0%
!! TAAAACCGGCTTGAGAGGTG+AGG - chr8.2:31005208-31005227 None:intergenic 50.0%
AGCGGAAACCTGATAGCAGG+TGG - chr8.2:31005062-31005081 None:intergenic 55.0%
AGCGGAAACCTTACAGCAGG+TGG - chr8.2:31004994-31005013 None:intergenic 55.0%
ATGTCCAGTCCTGGGTGTGA+GGG + chr8.2:31005116-31005135 MS.gene066501:intron 55.0%
CAATCAGCACTTAGTCCCCC+TGG + chr8.2:31005766-31005785 MS.gene066501:CDS 55.0%
CCCCCTGGTGGAGTTTATCA+AGG + chr8.2:31005781-31005800 MS.gene066501:CDS 55.0%
GGTGGCCCAATGGATCTTGA+TGG - chr8.2:31004976-31004995 None:intergenic 55.0%
TTAACACACCCCTCACACCC+AGG - chr8.2:31005128-31005147 None:intergenic 55.0%
TTCCGCTATCGGACCACTGA+TGG + chr8.2:31005007-31005026 MS.gene066501:intron 55.0%
!! CCCCACAACATCGGCTTATG+AGG - chr8.2:31004900-31004919 None:intergenic 55.0%
!! CCCCATAAAACCGGCTTGAG+AGG - chr8.2:31005213-31005232 None:intergenic 55.0%
ACGCTCCAGATGTCCAGTCC+TGG + chr8.2:31005107-31005126 MS.gene066501:intron 60.0%
CACACCCAGGACTGGACATC+TGG - chr8.2:31005115-31005134 None:intergenic 60.0%
CCATTGGGCCACCTGCTGTA+AGG + chr8.2:31004983-31005002 MS.gene066501:intron 60.0%
CCTTACAGCAGGTGGCCCAA+TGG - chr8.2:31004986-31005005 None:intergenic 60.0%
CGCTCCAGATGTCCAGTCCT+GGG + chr8.2:31005108-31005127 MS.gene066501:intron 60.0%
GATGTCCAGTCCTGGGTGTG+AGG + chr8.2:31005115-31005134 MS.gene066501:intron 60.0%
TCAGCACTTAGTCCCCCTGG+TGG + chr8.2:31005769-31005788 MS.gene066501:CDS 60.0%
TGTCCAGTCCTGGGTGTGAG+GGG + chr8.2:31005117-31005136 MS.gene066501:intron 60.0%
! AGGACTGGACATCTGGAGCG+TGG - chr8.2:31005108-31005127 None:intergenic 60.0%
ACACCCCTCACACCCAGGAC+TGG - chr8.2:31005123-31005142 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 31004194 31005997 31004194 ID=MS.gene066501
chr8.2 mRNA 31004194 31005997 31004194 ID=MS.gene066501.t1;Parent=MS.gene066501
chr8.2 exon 31004194 31004802 31004194 ID=MS.gene066501.t1.exon1;Parent=MS.gene066501.t1
chr8.2 CDS 31004194 31004802 31004194 ID=cds.MS.gene066501.t1;Parent=MS.gene066501.t1
chr8.2 exon 31005475 31005907 31005475 ID=MS.gene066501.t1.exon2;Parent=MS.gene066501.t1
chr8.2 CDS 31005475 31005907 31005475 ID=cds.MS.gene066501.t1;Parent=MS.gene066501.t1
chr8.2 exon 31005987 31005997 31005987 ID=MS.gene066501.t1.exon3;Parent=MS.gene066501.t1
chr8.2 CDS 31005987 31005997 31005987 ID=cds.MS.gene066501.t1;Parent=MS.gene066501.t1
Gene Sequence

>MS.gene066501

ATGAACACAAGGAATGATGACAAGGTGAAGTTTGCAGCTCAAGAAGGTGATATGAACCTTCTCTATACTTTAATTGAGGAGGATCCATATGTTTTGGAATATATAGATTTGATTCCATTTGTTGAAACTCCTCTACATATAGCTGCATCAATGGGACATGTTCGATTTTCCACTGAAATTATGAGATTGAAACCTTCATTTGCATGGAAGCTAAATCAACAAGGGTTCAGTCCAATCCACCTTGCCATGCAAAACAACCAAAAGAGTATTGTGCTTCGATTTGTAGACATGAATAAGGAACCTGTTAGAATTAAAGGAAGGGAAGGTTTAACTCCTCTTCATATTGCTTGCCAAAATGGAGAAATTGACCTTGTAGCTAATTTCCTATTTGTTTGTCCAAATTCTATTGAAGATGTTACTGTGAGGGGTGAGACTGCACTTCATATTGCTGTAAGAAATAAACAATTTGAAGCTCTTCATGTGTTGGTTGGTTGGTTGAAGACAAATCGCCAAAGAGGTGCTAGGGAGTTAGAGAAATTAACACTCAACTGTATGGATGAGATGGGAAATACTATTTTGCACATTTCATCTCTAAACAATGACTCAAAGGTATCCTTCTTTTTCTAGTTTAATTTGTCTTAAAGAGTCCCACGTCGGATAAGAGATGACATGACAATGTGTTTATCAGTAGGGGCAATCTTCACCTCATAAGCCGATGTTGTGGGGTTGTGTTAGGCCTAACCATGATTTTTAAGATGGTATGAGAGCCTCTTCAAGATCCATCAAGATCCATTGGGCCACCTGCTGTAAGGTTTCCGCTATCGGACCACTGATGGTATTAGAGCCTCCTCCAAGATTCATTAGGCCACCTGCTATCAGGTTTCCGCTATCGGACCACACACCATTTATGTCCACGCTCCAGATGTCCAGTCCTGGGTGTGAGGGGTGTGTTAAAGAGTCCCACATCGGATAAGAGATGACCTGACAATGTGTTTATAAGTGGGGGACAATCCTCACCTCTCAAGCCGGTTTTATGGGGTTGTGTTAGGCCTAATCACAATTTCTAAGAATGTCTTCTTTATACATCCTTTTTTTTGTACCCTCAATTATAATTTAACTTATAACTTTGCTAAGTCACTTATTTTTAATTAAAAATGAATTTTTTTATACGACTAATATATTTTACAATTCATAATAAAATTCAATTTACAAATCAATAAATAGCTATTCCAATTCACAATATGAATCTTGATTTGTTATTCATGTTATTCCAATTCACAGGCACTTCAATTGTTGGTAAAGACTAAGATAACTTTGAATGCAAAAAACTTGGAGAACTCAACAGCATTAGACATAGCAGCAAGTGCCTCAATCAAGGGTATATTACTAAGTGCTGGAGCAAAACCTAGCTCAAAAGTCAAAGATGCCTCCAAACTTGAAGATAAATTAAGATCAAATGTCACATTTATGGACAAAATATTAGTTTATGTCCTACGCATTAGAAAAGATATATCAGAGGAACAACGCAACACTTTTCTAATAGTTGCTGCTCTTATTGCAACTGCTACATATCAATCAGCACTTAGTCCCCCTGGTGGAGTTTATCAAGGTAATGCTGAGGATCACAATAATAATAATGTGAAAAACACCACTTCTTTGAATTCTAATGCAACAATGCCCCATGAATATGTTGGTAAAGCGGTTATAAATGAAGGTGATTTTTTTTCCTTGTCAATTTTTAATACACTTTCACTTTTGTTATCAACCATGACAATATATCTTTTGACCCCAAGTGGGTCAATAG
Protein sequence

>MS.gene066501.t1

MNTRNDDKVKFAAQEGDMNLLYTLIEEDPYVLEYIDLIPFVETPLHIAASMGHVRFSTEIMRLKPSFAWKLNQQGFSPIHLAMQNNQKSIVLRFVDMNKEPVRIKGREGLTPLHIACQNGEIDLVANFLFVCPNSIEDVTVRGETALHIAVRNKQFEALHVLVGWLKTNRQRGARELEKLTLNCMDEMGNTILHISSLNNDSKALQLLVKTKITLNAKNLENSTALDIAASASIKGILLSAGAKPSSKVKDASKLEDKLRSNVTFMDKILVYVLRIRKDISEEQRNTFLIVAALIATATYQSALSPPGGVYQGNAEDHNNNNVKNTTSLNSNATMPHEYVGKAVINEVGQ