AlfalfaGEDB | MS.gene039682

M. sativa cultivar XinJiangDaYe / MS.gene039682

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13637.9 PF13962.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039682.t1	XP_003598604.2	83.4	356	44	2	1	341	1	356	1.50E-153	552.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039682.t1	Q8GYH5	26.9	305	210	5	9	304	4	304	2.4e-22	107.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039682.t1	G7IYT6	83.4	356	44	2	1	341	1	356	1.1e-153	552.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene039682	MS.gene48655	PPI
MS.gene039682	MS.gene09785	PPI
MS.gene039682	MS.gene64441	PPI
MS.gene039682	MS.gene066046	PPI
MS.gene039682	MS.gene007486	PPI
MS.gene039682	MS.gene035805	PPI
MS.gene039682	MS.gene23810	PPI
MS.gene056455	MS.gene039682	PPI
MS.gene039682	MS.gene51335	PPI
MS.gene039682	MS.gene027073	PPI
MS.gene039682	MS.gene027072	PPI
MS.gene039682	MS.gene65463	PPI
MS.gene039682	MS.gene007485	PPI
MS.gene039682	MS.gene23196	PPI
MS.gene039682	MS.gene067705	PPI
MS.gene039682	MS.gene71204	PPI
MS.gene039682	MS.gene025229	PPI
MS.gene039682	MS.gene30433	PPI
MS.gene039682	MS.gene043742	PPI
MS.gene039682	MS.gene027075	PPI
MS.gene039682	MS.gene027441	PPI
MS.gene039682	MS.gene061932	PPI
MS.gene039682	MS.gene050457	PPI
MS.gene039682	MS.gene99973	PPI
MS.gene039682	MS.gene30174	PPI
MS.gene039682	MS.gene064542	PPI
MS.gene039682	MS.gene91775	PPI
MS.gene039682	MS.gene051003	PPI
MS.gene039682	MS.gene25515	PPI
MS.gene039682	MS.gene056455	PPI
MS.gene039682	MS.gene89986	PPI
MS.gene039682	MS.gene78281	PPI
MS.gene039682	MS.gene050270	PPI
MS.gene039682	MS.gene08470	PPI
MS.gene039682	MS.gene34712	PPI
MS.gene039682	MS.gene058128	PPI
MS.gene039682	MS.gene018518	PPI
MS.gene039682	MS.gene007487	PPI
MS.gene039682	MS.gene065848	PPI
MS.gene039682	MS.gene037184	PPI
MS.gene039682	MS.gene004844	PPI
MS.gene039682	MS.gene068249	PPI
MS.gene039682	MS.gene99588	PPI
MS.gene039682	MS.gene005995	PPI
MS.gene69965	MS.gene039682	PPI
MS.gene039682	MS.gene54764	PPI
MS.gene039682	MS.gene24806	PPI
MS.gene039682	MS.gene038519	PPI
MS.gene039682	MS.gene41291	PPI
MS.gene039682	MS.gene27223	PPI
MS.gene039682	MS.gene042783	PPI
MS.gene039682	MS.gene97943	PPI
MS.gene039682	MS.gene050272	PPI
MS.gene039682	MS.gene63085	PPI
MS.gene039682	MS.gene26021	PPI
MS.gene30172	MS.gene039682	PPI
MS.gene039682	MS.gene69687	PPI
MS.gene039682	MS.gene26532	PPI
MS.gene039682	MS.gene050456	PPI
MS.gene23852	MS.gene039682	PPI
MS.gene039682	MS.gene51258	PPI
MS.gene039682	MS.gene32723	PPI
MS.gene039682	MS.gene010910	PPI
MS.gene027071	MS.gene039682	PPI
MS.gene039682	MS.gene053363	PPI
MS.gene039682	MS.gene066467	PPI
MS.gene039682	MS.gene34651	PPI
MS.gene039682	MS.gene32726	PPI
MS.gene039682	MS.gene71122	PPI
MS.gene010910	MS.gene039682	PPI
MS.gene039682	MS.gene22482	PPI
MS.gene039682	MS.gene24922	PPI
MS.gene039682	MS.gene67157	PPI
MS.gene039682	MS.gene052956	PPI
MS.gene039682	MS.gene60920	PPI
MS.gene039682	MS.gene73119	PPI
MS.gene039682	MS.gene92243	PPI
MS.gene063222	MS.gene039682	PPI
MS.gene039682	MS.gene037950	PPI
MS.gene039682	MS.gene027074	PPI
MS.gene039682	MS.gene34009	PPI
MS.gene039682	MS.gene51262	PPI
MS.gene039682	MS.gene26672	PPI
MS.gene69687	MS.gene039682	PPI
MS.gene039682	MS.gene043662	PPI
MS.gene039682	MS.gene014931	PPI
MS.gene010912	MS.gene039682	PPI
MS.gene039682	MS.gene21888	PPI
MS.gene039682	MS.gene066500	PPI
MS.gene039682	MS.gene23852	PPI
MS.gene039682	MS.gene39623	PPI
MS.gene039682	MS.gene066464	PPI
MS.gene78281	MS.gene039682	PPI
MS.gene039682	MS.gene07706	PPI
MS.gene039682	MS.gene25024	PPI
MS.gene039682	MS.gene012203	PPI
MS.gene039682	MS.gene26019	PPI
MS.gene039682	MS.gene022109	PPI
MS.gene039682	MS.gene30176	PPI
MS.gene039682	MS.gene041770	PPI
MS.gene039682	MS.gene81055	PPI
MS.gene039682	MS.gene65775	PPI
MS.gene039682	MS.gene99554	PPI
MS.gene039682	MS.gene80163	PPI
MS.gene039682	MS.gene02469	PPI
MS.gene039682	MS.gene33377	PPI
MS.gene039682	MS.gene024753	PPI
MS.gene039682	MS.gene045937	PPI
MS.gene039682	MS.gene51278	PPI
MS.gene039682	MS.gene69966	PPI
MS.gene039682	MS.gene87218	PPI
MS.gene039682	MS.gene85534	PPI
MS.gene039682	MS.gene23881	PPI
MS.gene47479	MS.gene039682	PPI
MS.gene039682	MS.gene066501	PPI
MS.gene039682	MS.gene062662	PPI
MS.gene039682	MS.gene97379	PPI
MS.gene039682	MS.gene21734	PPI
MS.gene039682	MS.gene30177	PPI
MS.gene039682	MS.gene70008	PPI
MS.gene039682	MS.gene008767	PPI
MS.gene039682	MS.gene008833	PPI
MS.gene039682	MS.gene36842	PPI
MS.gene039682	MS.gene23811	PPI
MS.gene039682	MS.gene071113	PPI
MS.gene039682	MS.gene90400	PPI
MS.gene039682	MS.gene25244	PPI
MS.gene039682	MS.gene69965	PPI
MS.gene039682	MS.gene82740	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039682.t1	MTR_3g016210	86.798	356	32	2	1	341	1	356	0.0	622
MS.gene039682.t1	MTR_8g072510	70.674	341	100	0	1	341	1	341	7.01e-173	488
MS.gene039682.t1	MTR_8g039620	66.764	343	111	1	2	341	6	348	1.94e-162	461
MS.gene039682.t1	MTR_8g062410	67.638	343	102	4	1	341	1	336	1.28e-158	452
MS.gene039682.t1	MTR_8g073260	63.372	344	123	2	1	343	1	342	7.38e-158	450
MS.gene039682.t1	MTR_7g021090	64.897	339	112	3	4	341	3	335	3.60e-156	444
MS.gene039682.t1	MTR_1g059930	67.953	337	107	1	8	343	10	346	2.41e-155	443
MS.gene039682.t1	MTR_7g451420	65.595	311	107	0	3	313	2	312	7.26e-146	414
MS.gene039682.t1	MTR_8g068990	60.465	344	117	4	2	341	4	332	1.47e-143	414
MS.gene039682.t1	MTR_8g069880	61.947	339	127	2	6	343	3	340	1.19e-139	404
MS.gene039682.t1	MTR_8g467780	59.420	345	129	3	10	343	11	355	1.77e-129	378
MS.gene039682.t1	MTR_8g040930	62.457	293	107	1	52	341	1	293	1.16e-128	373
MS.gene039682.t1	MTR_8g041240	62.457	293	107	1	52	341	1	293	1.16e-128	373
MS.gene039682.t1	MTR_8g066670	61.404	342	129	3	1	341	1067	1406	1.89e-127	398
MS.gene039682.t1	MTR_3g105650	50.000	310	147	2	8	310	3	311	5.46e-103	309
MS.gene039682.t1	MTR_8g073275	46.797	359	114	7	52	343	1	349	2.78e-92	283
MS.gene039682.t1	MTR_1g069110	28.526	312	202	7	17	325	25	318	8.90e-29	115
MS.gene039682.t1	MTR_7g099580	28.526	312	154	10	22	319	24	280	5.75e-28	112
MS.gene039682.t1	MTR_7g099570	29.843	191	120	3	13	198	12	193	8.74e-20	90.9
MS.gene039682.t1	MTR_2g101320	25.101	247	158	5	38	267	134	370	1.70e-16	80.9
MS.gene039682.t1	MTR_7g117620	26.027	292	172	7	45	309	119	393	3.19e-16	80.1
MS.gene039682.t1	MTR_1g115575	25.606	289	180	6	45	310	169	445	6.50e-14	73.2
MS.gene039682.t1	MTR_2g101310	26.695	236	145	7	41	258	137	362	1.23e-12	69.3
MS.gene039682.t1	MTR_2g101310	25.822	213	140	4	41	245	137	339	2.41e-12	68.2
MS.gene039682.t1	MTR_4g062100	21.683	309	218	7	1	309	100	384	3.69e-12	67.8
MS.gene039682.t1	MTR_1g032100	24.405	336	194	10	10	309	60	371	3.79e-12	67.4
MS.gene039682.t1	MTR_2g096190	23.457	324	211	8	10	309	70	380	2.66e-11	65.1
MS.gene039682.t1	MTR_2g096190	24.706	170	126	1	1	170	96	263	5.46e-11	63.9
MS.gene039682.t1	MTR_2g033050	28.729	181	117	4	56	232	212	384	2.89e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039682.t1	AT4G10720	41.304	322	177	2	9	320	4	323	5.95e-83	258
MS.gene039682.t1	AT4G10720	41.304	322	177	2	9	320	4	323	2.97e-82	257
MS.gene039682.t1	AT1G14480	39.117	317	179	3	9	313	4	318	1.74e-72	231
MS.gene039682.t1	AT1G14500	36.646	322	195	2	9	321	4	325	3.85e-71	228
MS.gene039682.t1	AT5G15500	37.690	329	197	3	10	330	6	334	8.14e-70	225
MS.gene039682.t1	AT5G54620	39.216	306	179	2	9	307	4	309	2.89e-67	218
MS.gene039682.t1	AT5G54610	38.689	305	174	5	9	304	4	304	2.11e-66	215
MS.gene039682.t1	AT1G14480	34.069	317	152	4	9	313	4	275	8.27e-52	176
MS.gene039682.t1	AT5G15500	33.766	231	139	5	111	330	1	228	2.31e-31	121
MS.gene039682.t1	AT5G51160	28.621	290	171	7	58	325	31	306	2.74e-30	120
MS.gene039682.t1	AT4G03500	25.515	388	177	13	10	310	140	502	2.78e-19	89.4
MS.gene039682.t1	AT4G03500	25.515	388	177	13	10	310	117	479	2.90e-19	89.4
MS.gene039682.t1	AT4G03500	25.515	388	177	13	10	310	117	479	2.90e-19	89.4
MS.gene039682.t1	AT4G03460	31.532	222	115	6	101	310	290	486	6.27e-18	85.5
MS.gene039682.t1	AT4G03460	31.532	222	115	6	101	310	258	454	6.46e-18	85.1
MS.gene039682.t1	AT2G01680	27.488	211	133	4	45	247	97	295	1.15e-14	75.5
MS.gene039682.t1	AT3G09550	26.606	327	192	10	13	310	150	457	4.55e-14	73.6
MS.gene039682.t1	AT3G09550	26.606	327	192	10	13	310	150	457	4.55e-14	73.6
MS.gene039682.t1	AT3G09550	26.606	327	192	10	13	310	157	464	6.29e-14	73.2
MS.gene039682.t1	AT1G03670	26.183	317	156	9	10	310	219	473	1.40e-13	72.0
MS.gene039682.t1	AT5G54700	26.106	226	133	6	102	325	23	216	1.17e-12	68.6
MS.gene039682.t1	AT5G60070	22.977	309	215	8	2	309	104	390	2.51e-12	68.2
MS.gene039682.t1	AT1G10340	24.601	313	175	10	46	313	136	432	3.34e-12	67.8
MS.gene039682.t1	AT3G12360	25.170	294	175	9	45	310	167	443	7.42e-12	66.6
MS.gene039682.t1	AT3G12360	25.170	294	175	9	45	310	155	431	7.95e-12	66.6
MS.gene039682.t1	AT4G03450	23.718	312	167	8	13	310	230	484	4.31e-11	64.3
MS.gene039682.t1	AT4G03450	27.830	212	118	6	113	310	294	484	6.60e-11	63.9
MS.gene039682.t1	AT1G07710	23.926	326	206	9	10	309	70	379	6.85e-11	63.9
MS.gene039682.t1	AT1G07710	23.926	326	206	9	10	309	70	379	6.85e-11	63.9

Find 63 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAAATCAAATACTTCGTTTA+TGG	0.103857	3.3:+10347019	MS.gene039682:CDS
TCAAGATGATCCATTCATTT+TGG	0.177439	3.3:+10346167	MS.gene039682:CDS
TTTGCATATTGCTGCATCTA+TGG	0.193758	3.3:+10346224	MS.gene039682:CDS
AAATCAAATACTTCGTTTAT+GGG	0.280423	3.3:+10347020	MS.gene039682:CDS
TCGCTTTGTGAACTTCAATA+AGG	0.306051	3.3:+10346368	MS.gene039682:CDS
TCATAATCTCGGAGGCAAAT+TGG	0.327443	3.3:-10346254	None:intergenic
CGCTTCAAGTGCTTCTCGGC+TGG	0.336317	3.3:+10346565	MS.gene039682:CDS
CCTTTGATATATCGTTTCTA+AGG	0.345889	3.3:-10347067	None:intergenic
TGTGGAAGAAATAGTAGAAT+TGG	0.372270	3.3:-10347216	None:intergenic
AACATGAATAGCACAAATAA+TGG	0.374381	3.3:+10346087	None:intergenic
TCCTAGTCTTTATCAACAAT+TGG	0.376880	3.3:-10346857	None:intergenic
CATCTTGAATTACTGTATAA+AGG	0.378164	3.3:-10346152	None:intergenic
AAGGACCTTGTTAGAGTTGA+AGG	0.390046	3.3:+10346387	MS.gene039682:CDS
AGTTAAAACCTTCATTTGCT+TGG	0.391509	3.3:+10346277	MS.gene039682:CDS
CACAGGAAATGCTGGGAAAT+CGG	0.392479	3.3:+10347235	MS.gene039682:CDS
TGTTGCCATTCTCATCCTCC+TGG	0.417992	3.3:-10346641	None:intergenic
TCCACCGGGTGGAGTATATC+AGG	0.420465	3.3:+10347157	MS.gene039682:CDS
ATTTCTTCCACAGGAAATGC+TGG	0.421561	3.3:+10347227	MS.gene039682:CDS
TGCAAAGGAGTTTCAACAAA+TGG	0.440241	3.3:-10346207	None:intergenic
AAATTTGTGCGCGAAGAACT+TGG	0.444326	3.3:+10346881	MS.gene039682:CDS
GTCAAGTATTCAATAGATTC+CGG	0.450565	3.3:-10346489	None:intergenic
TTGCATATTGCTGCATCTAT+GGG	0.452667	3.3:+10346225	MS.gene039682:CDS
ATGTGCAAGTGTGGGTGTAT+TGG	0.453819	3.3:-10346991	None:intergenic
TGCAACCGCCACCTTTCAAT+CGG	0.461236	3.3:+10347127	MS.gene039682:CDS
TCTATCATCTCCAAAATGAA+TGG	0.461946	3.3:-10346177	None:intergenic
GAGGCGCTTCAAGTGCTTCT+CGG	0.479401	3.3:+10346561	MS.gene039682:CDS
TTGAAAGTTGCAGCTGAAGC+AGG	0.483184	3.3:+10346117	MS.gene039682:CDS
TTTAGTTTCCAAGCAAATGA+AGG	0.485832	3.3:-10346285	None:intergenic
CTTCAGCTGCAACTTTCAAT+CGG	0.493113	3.3:-10346113	None:intergenic
TCAATCGGCAATGTCTCCAC+CGG	0.497256	3.3:+10347142	MS.gene039682:CDS
TTAAGTGTTGGAGCAAAACC+TGG	0.501664	3.3:+10346957	MS.gene039682:CDS
GTATTGGTGACTTCCGAGCC+AGG	0.502424	3.3:-10346975	None:intergenic
AAGAATATATTATTAAGTGT+TGG	0.518242	3.3:+10346945	MS.gene039682:CDS
CAAAGGAGCAACACAACACT+TGG	0.524285	3.3:+10347084	MS.gene039682:CDS
TTTAAATTTATGTGCAAGTG+TGG	0.525438	3.3:-10347000	None:intergenic
AATTCTACTATTTCTTCCAC+AGG	0.534130	3.3:+10347218	MS.gene039682:CDS
TTAAACCAGGAGGATGAGAA+TGG	0.553403	3.3:+10346636	MS.gene039682:CDS
TGTTGGAGCAAAACCTGGCT+CGG	0.554756	3.3:+10346962	MS.gene039682:CDS
TGGAGACATTGCCGATTGAA+AGG	0.557780	3.3:-10347138	None:intergenic
CATTGCCGATTGAAAGGTGG+CGG	0.562087	3.3:-10347132	None:intergenic
ATTTGACTTGCAAAATGAAG+AGG	0.564648	3.3:-10346426	None:intergenic
AGCGCTAAGTAGCGACCCAC+AGG	0.570676	3.3:+10346680	MS.gene039682:CDS
TTTCTTCCACAGGAAATGCT+GGG	0.580062	3.3:+10347228	MS.gene039682:CDS
CGATTTCCCAGCATTTCCTG+TGG	0.589887	3.3:-10347234	None:intergenic
CTATTGAATACTTGACTGTG+AGG	0.590456	3.3:+10346496	MS.gene039682:CDS
TTCTTCCTTCAACTCTAACA+AGG	0.592008	3.3:-10346392	None:intergenic
CAATCGGCAATGTCTCCACC+GGG	0.594975	3.3:+10347143	MS.gene039682:CDS
TGTTATGAATGAACAGTATG+AGG	0.598636	3.3:+10346542	MS.gene039682:CDS
CCTTAGAAACGATATATCAA+AGG	0.601564	3.3:+10347067	MS.gene039682:CDS
AACAAATAAACAAAGAGGTG+CGG	0.610952	3.3:+10346593	MS.gene039682:CDS
CTCAAAACAAATAAACAAAG+AGG	0.621738	3.3:+10346588	MS.gene039682:CDS
GCTTGGAAACTAAATCAACA+AGG	0.624515	3.3:+10346294	MS.gene039682:CDS
GAAATATAAAATATTAAACC+AGG	0.634407	3.3:+10346623	MS.gene039682:CDS
TTAAATTTATGTGCAAGTGT+GGG	0.648286	3.3:-10346999	None:intergenic
ATAGATGCAGCAATATGCAA+AGG	0.653352	3.3:-10346222	None:intergenic
AAACAAAACATTATTAGACA+TGG	0.654253	3.3:+10346905	MS.gene039682:CDS
TCCAATTGTTGATAAAGACT+AGG	0.670391	3.3:+10346856	MS.gene039682:CDS
AGACATTGCCGATTGAAAGG+TGG	0.670508	3.3:-10347135	None:intergenic
TCGGCAATGTCTCCACCGGG+TGG	0.675164	3.3:+10347146	MS.gene039682:CDS
TTAACCTGATATACTCCACC+CGG	0.675311	3.3:-10347161	None:intergenic
TAGCGCTGAAATGTGCAAGA+TGG	0.680693	3.3:-10346664	None:intergenic
ATATAAAATATTAAACCAGG+AGG	0.697517	3.3:+10346626	MS.gene039682:CDS
ACCTGATATACTCCACCCGG+TGG	0.702199	3.3:-10347158	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AGTATTTTTTATTAATTTCA+TGG	+	chr3.3:10346821-10346840	MS.gene039682:intron	10.0%
!!	AAGAATATATTATTAAGTGT+TGG	+	chr3.3:10346945-10346964	MS.gene039682:CDS	15.0%
!!	GAAATATAAAATATTAAACC+AGG	+	chr3.3:10346623-10346642	MS.gene039682:CDS	15.0%
!!	TAAATATTGTTATAGTTGAT+AGG	-	chr3.3:10347316-10347335	None:intergenic	15.0%
!!!	AAATATTGTTATAGTTGATA+GGG	-	chr3.3:10347315-10347334	None:intergenic	15.0%
!!	AAACAAAACATTATTAGACA+TGG	+	chr3.3:10346905-10346924	MS.gene039682:CDS	20.0%
!!	AAATCAAATACTTCGTTTAT+GGG	+	chr3.3:10347020-10347039	MS.gene039682:CDS	20.0%
!!	ATAAAAAAAATGATTACCTG+TGG	-	chr3.3:10346699-10346718	None:intergenic	20.0%
!!	ATATAAAATATTAAACCAGG+AGG	+	chr3.3:10346626-10346645	MS.gene039682:CDS	20.0%
!!	TAAAAAAAATGATTACCTGT+GGG	-	chr3.3:10346698-10346717	None:intergenic	20.0%
!!	TAAATCAAATACTTCGTTTA+TGG	+	chr3.3:10347019-10347038	MS.gene039682:CDS	20.0%
!	AATCGTATAAATTAGACTGA+TGG	+	chr3.3:10346736-10346755	MS.gene039682:intron	25.0%
!	CATCTTGAATTACTGTATAA+AGG	-	chr3.3:10346155-10346174	None:intergenic	25.0%
!	CTCAAAACAAATAAACAAAG+AGG	+	chr3.3:10346588-10346607	MS.gene039682:CDS	25.0%
!	TATAAATTAGACTGATGGTT+TGG	+	chr3.3:10346741-10346760	MS.gene039682:intron	25.0%
!	TTAAATTTATGTGCAAGTGT+GGG	-	chr3.3:10347002-10347021	None:intergenic	25.0%
!	TTTAAATTTATGTGCAAGTG+TGG	-	chr3.3:10347003-10347022	None:intergenic	25.0%
!!!	AGGTTTTAACTTCATAATCT+CGG	-	chr3.3:10346268-10346287	None:intergenic	25.0%
	AACAAATAAACAAAGAGGTG+CGG	+	chr3.3:10346593-10346612	MS.gene039682:CDS	30.0%
	AACATATTGAAATAAGCTCC+TGG	-	chr3.3:10347266-10347285	None:intergenic	30.0%
	AGTTAAAACCTTCATTTGCT+TGG	+	chr3.3:10346277-10346296	MS.gene039682:CDS	30.0%
	CCTTAGAAACGATATATCAA+AGG	+	chr3.3:10347067-10347086	MS.gene039682:CDS	30.0%
	CCTTTGATATATCGTTTCTA+AGG	-	chr3.3:10347070-10347089	None:intergenic	30.0%
	GCAAAACAACCAAAAAAGTA+TGG	+	chr3.3:10346341-10346360	MS.gene039682:CDS	30.0%
	GTCAAGTATTCAATAGATTC+CGG	-	chr3.3:10346492-10346511	None:intergenic	30.0%
	TATTAATTTCATGGTAGCAC+AGG	+	chr3.3:10346830-10346849	MS.gene039682:intron	30.0%
	TCTATCATCTCCAAAATGAA+TGG	-	chr3.3:10346180-10346199	None:intergenic	30.0%
	TGTGGAAGAAATAGTAGAAT+TGG	-	chr3.3:10347219-10347238	None:intergenic	30.0%
	TGTTATGAATGAACAGTATG+AGG	+	chr3.3:10346542-10346561	MS.gene039682:CDS	30.0%
!	AATTCTACTATTTCTTCCAC+AGG	+	chr3.3:10347218-10347237	MS.gene039682:CDS	30.0%
!	CTTCATTTTGCAAGTCAAAT+TGG	+	chr3.3:10346429-10346448	MS.gene039682:CDS	30.0%
!	TAATTTTCTCTTTGCTTGTC+CGG	+	chr3.3:10346470-10346489	MS.gene039682:CDS	30.0%
!	TCAAGATGATCCATTCATTT+TGG	+	chr3.3:10346167-10346186	MS.gene039682:CDS	30.0%
!	TCCAATTGTTGATAAAGACT+AGG	+	chr3.3:10346856-10346875	MS.gene039682:CDS	30.0%
!	TCCTAGTCTTTATCAACAAT+TGG	-	chr3.3:10346860-10346879	None:intergenic	30.0%
!	TTTAGTTTCCAAGCAAATGA+AGG	-	chr3.3:10346288-10346307	None:intergenic	30.0%
!!	ATTTGACTTGCAAAATGAAG+AGG	-	chr3.3:10346429-10346448	None:intergenic	30.0%
!!!	AGCGATTAACCATACTTTTT+TGG	-	chr3.3:10346353-10346372	None:intergenic	30.0%
!!!	TTTTAACTTCATAATCTCGG+AGG	-	chr3.3:10346265-10346284	None:intergenic	30.0%
	ATAGATGCAGCAATATGCAA+AGG	-	chr3.3:10346225-10346244	None:intergenic	35.0%
	ATATTTATTCTGATCCCAGC+TGG	+	chr3.3:10347329-10347348	MS.gene039682:intron	35.0%
	CTATTGAATACTTGACTGTG+AGG	+	chr3.3:10346496-10346515	MS.gene039682:CDS	35.0%
	GCTTGGAAACTAAATCAACA+AGG	+	chr3.3:10346294-10346313	MS.gene039682:CDS	35.0%
	TCGCTTTGTGAACTTCAATA+AGG	+	chr3.3:10346368-10346387	MS.gene039682:CDS	35.0%
	TGCAAAGGAGTTTCAACAAA+TGG	-	chr3.3:10346210-10346229	None:intergenic	35.0%
	TTCTTCCTTCAACTCTAACA+AGG	-	chr3.3:10346395-10346414	None:intergenic	35.0%
	TTGCATATTGCTGCATCTAT+GGG	+	chr3.3:10346225-10346244	MS.gene039682:CDS	35.0%
	TTTGCATATTGCTGCATCTA+TGG	+	chr3.3:10346224-10346243	MS.gene039682:CDS	35.0%
!	TTTTGCATAGCAAGATGGAT+AGG	-	chr3.3:10346327-10346346	None:intergenic	35.0%
	AAATTTGTGCGCGAAGAACT+TGG	+	chr3.3:10346881-10346900	MS.gene039682:CDS	40.0%
	AAGGACCTTGTTAGAGTTGA+AGG	+	chr3.3:10346387-10346406	MS.gene039682:CDS	40.0%
	ATTTCTTCCACAGGAAATGC+TGG	+	chr3.3:10347227-10347246	MS.gene039682:CDS	40.0%
	CTTCAGCTGCAACTTTCAAT+CGG	-	chr3.3:10346116-10346135	None:intergenic	40.0%
	TCATAATCTCGGAGGCAAAT+TGG	-	chr3.3:10346257-10346276	None:intergenic	40.0%
	TTAAACCAGGAGGATGAGAA+TGG	+	chr3.3:10346636-10346655	MS.gene039682:CDS	40.0%
	TTAACCTGATATACTCCACC+CGG	-	chr3.3:10347164-10347183	None:intergenic	40.0%
	TTTCTTCCACAGGAAATGCT+GGG	+	chr3.3:10347228-10347247	MS.gene039682:CDS	40.0%
!!	GGTTGTTTTGCATAGCAAGA+TGG	-	chr3.3:10346332-10346351	None:intergenic	40.0%
!!	TTAAGTGTTGGAGCAAAACC+TGG	+	chr3.3:10346957-10346976	MS.gene039682:CDS	40.0%
	ATGTGCAAGTGTGGGTGTAT+TGG	-	chr3.3:10346994-10347013	None:intergenic	45.0%
	CAAAGGAGCAACACAACACT+TGG	+	chr3.3:10347084-10347103	MS.gene039682:CDS	45.0%
	CACAGGAAATGCTGGGAAAT+CGG	+	chr3.3:10347235-10347254	MS.gene039682:CDS	45.0%
	TTGAAAGTTGCAGCTGAAGC+AGG	+	chr3.3:10346117-10346136	MS.gene039682:CDS	45.0%
	TTTATTCTGATCCCAGCTGG+TGG	+	chr3.3:10347332-10347351	MS.gene039682:intron	45.0%
!	AGACATTGCCGATTGAAAGG+TGG	-	chr3.3:10347138-10347157	None:intergenic	45.0%
!	TAGCGCTGAAATGTGCAAGA+TGG	-	chr3.3:10346667-10346686	None:intergenic	45.0%
!	TGGAGACATTGCCGATTGAA+AGG	-	chr3.3:10347141-10347160	None:intergenic	45.0%
	CGATTTCCCAGCATTTCCTG+TGG	-	chr3.3:10347237-10347256	None:intergenic	50.0%
	TCAATCGGCAATGTCTCCAC+CGG	+	chr3.3:10347142-10347161	MS.gene039682:CDS	50.0%
	TGCAACCGCCACCTTTCAAT+CGG	+	chr3.3:10347127-10347146	MS.gene039682:CDS	50.0%
	TGTTGCCATTCTCATCCTCC+TGG	-	chr3.3:10346644-10346663	None:intergenic	50.0%
	TGTTGGAGCAAAACCTGGCT+CGG	+	chr3.3:10346962-10346981	MS.gene039682:CDS	50.0%
!	CATTGCCGATTGAAAGGTGG+CGG	-	chr3.3:10347135-10347154	None:intergenic	50.0%
	ACCTGATATACTCCACCCGG+TGG	-	chr3.3:10347161-10347180	None:intergenic	55.0%
	CAATCGGCAATGTCTCCACC+GGG	+	chr3.3:10347143-10347162	MS.gene039682:CDS	55.0%
	TCCACCGGGTGGAGTATATC+AGG	+	chr3.3:10347157-10347176	MS.gene039682:CDS	55.0%
!	GAGGCGCTTCAAGTGCTTCT+CGG	+	chr3.3:10346561-10346580	MS.gene039682:CDS	55.0%
!	GTATTGGTGACTTCCGAGCC+AGG	-	chr3.3:10346978-10346997	None:intergenic	55.0%
	AGCGCTAAGTAGCGACCCAC+AGG	+	chr3.3:10346680-10346699	MS.gene039682:CDS	60.0%
	CGCTTCAAGTGCTTCTCGGC+TGG	+	chr3.3:10346565-10346584	MS.gene039682:CDS	60.0%
	GCTGGGAAATCGGTCTTGCC+AGG	+	chr3.3:10347245-10347264	MS.gene039682:intron	60.0%
	TCGGCAATGTCTCCACCGGG+TGG	+	chr3.3:10347146-10347165	MS.gene039682:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	10346090	10347362	10346090	ID=MS.gene039682
chr3.3	mRNA	10346090	10347362	10346090	ID=MS.gene039682.t1;Parent=MS.gene039682
chr3.3	exon	10346090	10346701	10346090	ID=MS.gene039682.t1.exon1;Parent=MS.gene039682.t1
chr3.3	CDS	10346090	10346701	10346090	ID=cds.MS.gene039682.t1;Parent=MS.gene039682.t1
chr3.3	exon	10346852	10347256	10346852	ID=MS.gene039682.t1.exon2;Parent=MS.gene039682.t1
chr3.3	CDS	10346852	10347256	10346852	ID=cds.MS.gene039682.t1;Parent=MS.gene039682.t1
chr3.3	exon	10347348	10347362	10347348	ID=MS.gene039682.t1.exon3;Parent=MS.gene039682.t1
chr3.3	CDS	10347348	10347362	10347348	ID=cds.MS.gene039682.t1;Parent=MS.gene039682.t1

Gene Sequence

>MS.gene039682

ATGAATAGCACAAATAATGGTGACCGATTGAAAGTTGCAGCTGAAGCAGGTGATATAGATCTCCTTTATACAGTAATTCAAGATGATCCATTCATTTTGGAGATGATAGATTTAATACCATTTGTTGAAACTCCTTTGCATATTGCTGCATCTATGGGTCATCTCCAATTTGCCTCCGAGATTATGAAGTTAAAACCTTCATTTGCTTGGAAACTAAATCAACAAGGATTCAGTCCTATCCATCTTGCTATGCAAAACAACCAAAAAAGTATGGTTAATCGCTTTGTGAACTTCAATAAGGACCTTGTTAGAGTTGAAGGAAGAAATGACATAGCTCCTCTTCATTTTGCAAGTCAAATTGGTGACGTTGAACTTTTAGCTAATTTTCTCTTTGCTTGTCCGGAATCTATTGAATACTTGACTGTGAGGTTTGAGACTGCATTGCATATTGCTGTTATGAATGAACAGTATGAGGCGCTTCAAGTGCTTCTCGGCTGGCTCAAAACAAATAAACAAAGAGGTGCGGATTTGCTGAAATATAAAATATTAAACCAGGAGGATGAGAATGGCAACACCATCTTGCACATTTCAGCGCTAAGTAGCGACCCACAGGTAATCATTTTTTTTATTTGAAGAACACGAAAGAAATCGTATAAATTAGACTGATGGTTTGGATCTAGCACACTAAATTTGTAGATTTTTAGTTGCTAATTTGAATGATCTCTAACAACAGTATTTTTTATTAATTTCATGGTAGCACAGGCGCTCCAATTGTTGATAAAGACTAGGATAAATTTGTGCGCGAAGAACTTGGAAAACAAAACATTATTAGACATGGCAGTCACTAGAGAGATCAAGAATATATTATTAAGTGTTGGAGCAAAACCTGGCTCGGAAGTCACCAATACACCCACACTTGCACATAAATTTAAATCAAATACTTCGTTTATGGGTAAAATGTTACTTTATTTAGTCTGCCTTAGAAACGATATATCAAAGGAGCAACACAACACTTGGTTGATAGTTGCGACTCTTGTTGCAACCGCCACCTTTCAATCGGCAATGTCTCCACCGGGTGGAGTATATCAGGTTAATGCTAGTGACAGTAGTTTGAACATCACTTCAGCCAATTCTACTATTTCTTCCACAGGAAATGCTGGGAAATCGGTCTTGCCAGGAGCTTATTTCAATATGTTTATATATCTGAATATGCTATCTTTTTCCCTATCAACTATAACAATATTTATTCTGATCCCAGCTGGTGGAAGATTAA

Protein sequence

>MS.gene039682.t1

MNSTNNGDRLKVAAEAGDIDLLYTVIQDDPFILEMIDLIPFVETPLHIAASMGHLQFASEIMKLKPSFAWKLNQQGFSPIHLAMQNNQKSMVNRFVNFNKDLVRVEGRNDIAPLHFASQIGDVELLANFLFACPESIEYLTVRFETALHIAVMNEQYEALQVLLGWLKTNKQRGADLLKYKILNQEDENGNTILHISALSSDPQALQLLIKTRINLCAKNLENKTLLDMAVTREIKNILLSVGAKPGSEVTNTPTLAHKFKSNTSFMGKMLLYLVCLRNDISKEQHNTWLIVATLVATATFQSAMSPPGGVYQVNASDSSLNITSANSTISSTGNAGKSLVED