Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65775.t1 | XP_003598604.2 | 77.2 | 356 | 29 | 3 | 6 | 309 | 1 | 356 | 6.20E-138 | 500.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65775.t1 | Q8GYH5 | 26.6 | 305 | 174 | 6 | 14 | 272 | 4 | 304 | 1.5e-20 | 101.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65775.t1 | G7IYT6 | 77.2 | 356 | 29 | 3 | 6 | 309 | 1 | 356 | 4.5e-138 | 500.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65775.t1 | MTR_3g016210 | 77.247 | 356 | 29 | 3 | 6 | 309 | 1 | 356 | 0.0 | 536 |
MS.gene65775.t1 | MTR_8g072510 | 64.223 | 341 | 85 | 1 | 6 | 309 | 1 | 341 | 1.70e-148 | 424 |
MS.gene65775.t1 | MTR_8g039620 | 59.767 | 343 | 98 | 2 | 7 | 309 | 6 | 348 | 1.37e-136 | 394 |
MS.gene65775.t1 | MTR_8g062410 | 60.933 | 343 | 88 | 5 | 6 | 309 | 1 | 336 | 7.51e-135 | 390 |
MS.gene65775.t1 | MTR_8g073260 | 57.267 | 344 | 107 | 3 | 6 | 311 | 1 | 342 | 4.34e-134 | 388 |
MS.gene65775.t1 | MTR_7g021090 | 57.941 | 340 | 99 | 4 | 8 | 309 | 2 | 335 | 9.32e-131 | 378 |
MS.gene65775.t1 | MTR_1g059930 | 60.290 | 345 | 99 | 2 | 5 | 311 | 2 | 346 | 1.34e-130 | 379 |
MS.gene65775.t1 | MTR_8g068990 | 55.255 | 333 | 119 | 4 | 5 | 309 | 2 | 332 | 2.56e-119 | 351 |
MS.gene65775.t1 | MTR_7g451420 | 56.913 | 311 | 97 | 1 | 8 | 281 | 2 | 312 | 3.88e-117 | 340 |
MS.gene65775.t1 | MTR_8g069880 | 54.572 | 339 | 115 | 3 | 11 | 311 | 3 | 340 | 9.19e-113 | 334 |
MS.gene65775.t1 | MTR_8g066670 | 55.523 | 344 | 113 | 4 | 4 | 309 | 1065 | 1406 | 6.54e-110 | 349 |
MS.gene65775.t1 | MTR_8g467780 | 52.754 | 345 | 115 | 4 | 15 | 311 | 11 | 355 | 3.46e-106 | 317 |
MS.gene65775.t1 | MTR_8g040930 | 54.266 | 293 | 94 | 2 | 57 | 309 | 1 | 293 | 5.34e-102 | 304 |
MS.gene65775.t1 | MTR_8g041240 | 54.266 | 293 | 94 | 2 | 57 | 309 | 1 | 293 | 5.34e-102 | 304 |
MS.gene65775.t1 | MTR_3g105650 | 42.903 | 310 | 132 | 3 | 13 | 278 | 3 | 311 | 1.11e-78 | 246 |
MS.gene65775.t1 | MTR_8g073275 | 40.947 | 359 | 98 | 7 | 57 | 311 | 1 | 349 | 4.19e-71 | 227 |
MS.gene65775.t1 | MTR_1g069110 | 29.524 | 315 | 158 | 9 | 22 | 293 | 25 | 318 | 1.35e-26 | 108 |
MS.gene65775.t1 | MTR_7g099580 | 28.571 | 280 | 158 | 9 | 27 | 287 | 24 | 280 | 9.37e-22 | 94.0 |
MS.gene65775.t1 | MTR_7g099570 | 29.577 | 213 | 133 | 6 | 18 | 221 | 12 | 216 | 8.44e-16 | 78.2 |
MS.gene65775.t1 | MTR_2g101320 | 24.896 | 241 | 149 | 7 | 15 | 235 | 142 | 370 | 3.97e-15 | 76.3 |
MS.gene65775.t1 | MTR_2g096190 | 24.013 | 304 | 190 | 9 | 1 | 277 | 91 | 380 | 3.70e-14 | 73.2 |
MS.gene65775.t1 | MTR_2g101310 | 27.468 | 233 | 136 | 9 | 15 | 226 | 142 | 362 | 1.46e-13 | 71.6 |
MS.gene65775.t1 | MTR_5g085500 | 29.487 | 156 | 95 | 5 | 50 | 198 | 8 | 155 | 1.64e-13 | 71.2 |
MS.gene65775.t1 | MTR_2g101310 | 27.468 | 233 | 136 | 9 | 15 | 226 | 142 | 362 | 2.30e-13 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65775.t1 | AT4G10720 | 37.578 | 322 | 152 | 3 | 14 | 288 | 4 | 323 | 2.48e-66 | 214 |
MS.gene65775.t1 | AT4G10720 | 37.578 | 322 | 152 | 3 | 14 | 288 | 4 | 323 | 7.85e-66 | 213 |
MS.gene65775.t1 | AT1G14480 | 35.647 | 317 | 153 | 5 | 14 | 281 | 4 | 318 | 4.78e-57 | 190 |
MS.gene65775.t1 | AT5G15500 | 34.650 | 329 | 170 | 4 | 15 | 298 | 6 | 334 | 4.04e-56 | 188 |
MS.gene65775.t1 | AT1G14500 | 32.919 | 322 | 170 | 4 | 14 | 289 | 4 | 325 | 8.39e-55 | 184 |
MS.gene65775.t1 | AT5G54620 | 34.314 | 306 | 157 | 3 | 14 | 275 | 4 | 309 | 2.05e-50 | 172 |
MS.gene65775.t1 | AT5G54610 | 34.098 | 305 | 151 | 6 | 14 | 272 | 4 | 304 | 7.15e-49 | 168 |
MS.gene65775.t1 | AT1G14480 | 30.599 | 317 | 126 | 6 | 14 | 281 | 4 | 275 | 1.09e-36 | 135 |
MS.gene65775.t1 | AT5G15500 | 34.884 | 215 | 126 | 5 | 95 | 298 | 17 | 228 | 2.87e-29 | 115 |
MS.gene65775.t1 | AT5G51160 | 26.692 | 266 | 158 | 7 | 49 | 289 | 49 | 302 | 1.84e-22 | 97.4 |
MS.gene65775.t1 | AT4G03460 | 27.899 | 276 | 156 | 8 | 18 | 278 | 239 | 486 | 4.24e-17 | 82.0 |
MS.gene65775.t1 | AT4G03460 | 27.899 | 276 | 156 | 8 | 18 | 278 | 207 | 454 | 5.19e-17 | 82.0 |
MS.gene65775.t1 | AT4G03450 | 25.725 | 276 | 169 | 7 | 18 | 278 | 230 | 484 | 4.07e-15 | 76.3 |
MS.gene65775.t1 | AT4G03450 | 25.725 | 276 | 169 | 7 | 18 | 278 | 230 | 484 | 7.59e-15 | 75.5 |
MS.gene65775.t1 | AT1G10340 | 26.022 | 269 | 154 | 8 | 49 | 281 | 173 | 432 | 1.73e-13 | 71.2 |
MS.gene65775.t1 | AT1G10340 | 26.022 | 269 | 154 | 8 | 49 | 281 | 169 | 428 | 1.93e-13 | 71.2 |
MS.gene65775.t1 | AT4G03490 | 28.223 | 287 | 153 | 12 | 15 | 278 | 211 | 467 | 4.47e-13 | 70.1 |
MS.gene65775.t1 | AT4G03490 | 28.223 | 287 | 153 | 12 | 15 | 278 | 201 | 457 | 5.83e-13 | 69.7 |
MS.gene65775.t1 | AT4G03490 | 28.223 | 287 | 153 | 12 | 15 | 278 | 211 | 467 | 6.61e-13 | 69.7 |
MS.gene65775.t1 | AT4G03480 | 24.643 | 280 | 174 | 8 | 15 | 278 | 357 | 615 | 1.42e-12 | 68.6 |
MS.gene65775.t1 | AT4G03480 | 24.643 | 280 | 174 | 8 | 15 | 278 | 360 | 618 | 1.42e-12 | 68.6 |
MS.gene65775.t1 | AT5G54700 | 27.027 | 222 | 125 | 8 | 77 | 293 | 27 | 216 | 3.48e-12 | 66.6 |
MS.gene65775.t1 | AT1G07710 | 25.658 | 304 | 174 | 10 | 6 | 277 | 96 | 379 | 6.64e-11 | 63.5 |
MS.gene65775.t1 | AT1G07710 | 25.658 | 304 | 174 | 10 | 6 | 277 | 96 | 379 | 6.64e-11 | 63.5 |
Find 60 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAAATCAAATACTTCGTTTA+TGG | 0.103857 | 3.2:+8490587 | MS.gene65775:CDS |
TCAAGATGATCCATTCATTT+TGG | 0.177439 | 3.2:+8489737 | MS.gene65775:CDS |
TTTGCATATTGCTGCATCTA+TGG | 0.193758 | 3.2:+8489794 | MS.gene65775:CDS |
AAATCAAATACTTCGTTTAT+GGG | 0.280423 | 3.2:+8490588 | MS.gene65775:CDS |
TCATAATCTCGGAGGCAAAT+TGG | 0.327443 | 3.2:-8489824 | None:intergenic |
CCTTTGATATATCGTTTCTA+AGG | 0.339894 | 3.2:-8490635 | None:intergenic |
CCCTTCAAGTGCTTCTCGGC+TGG | 0.361002 | 3.2:+8490133 | MS.gene65775:CDS |
TGTGGAAGAAATAGTAGAAT+TGG | 0.372270 | 3.2:-8490784 | None:intergenic |
AACATGAATAGCACAAATAA+TGG | 0.374381 | 3.2:+8489657 | MS.gene65775:CDS |
TCCTAGTCTTTATCAACAAT+TGG | 0.376880 | 3.2:-8490425 | None:intergenic |
CATCTTGAATTACTGTATAA+AGG | 0.378164 | 3.2:-8489722 | None:intergenic |
AGTTAAAACCTTCATTTGCT+TGG | 0.391509 | 3.2:+8489847 | MS.gene65775:CDS |
CACAGGAAATGCTGGGAAAT+CGG | 0.392479 | 3.2:+8490803 | MS.gene65775:CDS |
TCCACCGGGTGGAGTATATC+AGG | 0.420465 | 3.2:+8490725 | MS.gene65775:CDS |
ATTTCTTCCACAGGAAATGC+TGG | 0.421561 | 3.2:+8490795 | MS.gene65775:CDS |
TGCAAAGGAGTTTCAACAAA+TGG | 0.440241 | 3.2:-8489777 | None:intergenic |
AAATTTGTGCGCGAAGAACT+TGG | 0.444326 | 3.2:+8490449 | MS.gene65775:CDS |
GTCAAGTATTCAATAGATTC+CGG | 0.450565 | 3.2:-8490057 | None:intergenic |
TTGCATATTGCTGCATCTAT+GGG | 0.452667 | 3.2:+8489795 | MS.gene65775:CDS |
ATGTGCAAGTGTGGGTGTAT+TGG | 0.453819 | 3.2:-8490559 | None:intergenic |
TGCAACCGCCACCTTTCAAT+CGG | 0.461236 | 3.2:+8490695 | MS.gene65775:CDS |
TCTATCATCTCCAAAATGAA+TGG | 0.461946 | 3.2:-8489747 | None:intergenic |
TTGAAAGTTGCAGCTGAAGC+AGG | 0.483184 | 3.2:+8489687 | MS.gene65775:CDS |
GAGGCCCTTCAAGTGCTTCT+CGG | 0.483341 | 3.2:+8490129 | MS.gene65775:CDS |
TTTAGTTTCCAAGCAAATGA+AGG | 0.485832 | 3.2:-8489855 | None:intergenic |
CTTCAGCTGCAACTTTCAAT+CGG | 0.493113 | 3.2:-8489683 | None:intergenic |
GCCAGCCGAGAAGCACTTGA+AGG | 0.495753 | 3.2:-8490134 | None:intergenic |
TCAATCGGCAATGTCTCCAC+CGG | 0.497256 | 3.2:+8490710 | MS.gene65775:CDS |
GTATTGGTGACTTCCGAGCT+AGG | 0.510661 | 3.2:-8490543 | None:intergenic |
AAAGTGTTACTTTATTTAGT+CGG | 0.515772 | 3.2:+8490612 | MS.gene65775:CDS |
CAAAGGAGCAACACAACACT+TGG | 0.524285 | 3.2:+8490652 | MS.gene65775:CDS |
TTTAAATTTATGTGCAAGTG+TGG | 0.525438 | 3.2:-8490568 | None:intergenic |
AAGAGTATATTATTAAGTGT+TGG | 0.527914 | 3.2:+8490513 | MS.gene65775:CDS |
AATTCTACTATTTCTTCCAC+AGG | 0.534130 | 3.2:+8490786 | MS.gene65775:CDS |
TGGAGACATTGCCGATTGAA+AGG | 0.557780 | 3.2:-8490706 | None:intergenic |
CCAGCCGAGAAGCACTTGAA+GGG | 0.558571 | 3.2:-8490133 | None:intergenic |
CATTGCCGATTGAAAGGTGG+CGG | 0.562087 | 3.2:-8490700 | None:intergenic |
TGTTGGAGCAAAACCTAGCT+CGG | 0.562757 | 3.2:+8490530 | MS.gene65775:CDS |
TTAAACGAGGAGGATGAGAA+TGG | 0.566099 | 3.2:+8490204 | MS.gene65775:CDS |
AGCGCTAAGTAGCGACCCAC+AGG | 0.570676 | 3.2:+8490248 | MS.gene65775:CDS |
TTTCTTCCACAGGAAATGCT+GGG | 0.580062 | 3.2:+8490796 | MS.gene65775:CDS |
CGATTTCCCAGCATTTCCTG+TGG | 0.589887 | 3.2:-8490802 | None:intergenic |
CTATTGAATACTTGACTGTG+AGG | 0.590456 | 3.2:+8490064 | MS.gene65775:CDS |
CAATCGGCAATGTCTCCACC+GGG | 0.594975 | 3.2:+8490711 | MS.gene65775:CDS |
CCTTAGAAACGATATATCAA+AGG | 0.609897 | 3.2:+8490635 | MS.gene65775:CDS |
AACAAATAAACAAAGAGGTG+CGG | 0.610952 | 3.2:+8490161 | MS.gene65775:CDS |
CTCAAAACAAATAAACAAAG+AGG | 0.621738 | 3.2:+8490156 | MS.gene65775:CDS |
GCTTGGAAACTAAATCAACA+AGG | 0.624515 | 3.2:+8489864 | MS.gene65775:CDS |
TTAAATTTATGTGCAAGTGT+GGG | 0.648286 | 3.2:-8490567 | None:intergenic |
ATAGATGCAGCAATATGCAA+AGG | 0.653352 | 3.2:-8489792 | None:intergenic |
ATATAAAATATTAAACGAGG+AGG | 0.657988 | 3.2:+8490194 | MS.gene65775:CDS |
TCCAATTGTTGATAAAGACT+AGG | 0.670391 | 3.2:+8490424 | MS.gene65775:CDS |
AGACATTGCCGATTGAAAGG+TGG | 0.670508 | 3.2:-8490703 | None:intergenic |
TCGGCAATGTCTCCACCGGG+TGG | 0.675164 | 3.2:+8490714 | MS.gene65775:CDS |
TTAACCTGATATACTCCACC+CGG | 0.675311 | 3.2:-8490729 | None:intergenic |
AAACAAAACATCATTAGACA+TGG | 0.676970 | 3.2:+8490473 | MS.gene65775:CDS |
TAGCGCTGAAATGTGCAAGA+TGG | 0.680693 | 3.2:-8490232 | None:intergenic |
ACCTGATATACTCCACCCGG+TGG | 0.702199 | 3.2:-8490726 | None:intergenic |
TGTTATGAATGAACAGTACG+AGG | 0.707273 | 3.2:+8490110 | MS.gene65775:CDS |
GAAATATAAAATATTAAACG+AGG | 0.710842 | 3.2:+8490191 | MS.gene65775:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGTATTTTTTATTAATTTCA+TGG | + | chr3.2:8490389-8490408 | MS.gene65775:intron | 10.0% |
!! | GAAATATAAAATATTAAACG+AGG | + | chr3.2:8490191-8490210 | MS.gene65775:CDS | 15.0% |
!! | TAAATATTGTTATAGTTGAT+AGG | - | chr3.2:8490884-8490903 | None:intergenic | 15.0% |
!!! | AAATATTGTTATAGTTGATA+GGG | - | chr3.2:8490883-8490902 | None:intergenic | 15.0% |
!! | AAATCAAATACTTCGTTTAT+GGG | + | chr3.2:8490588-8490607 | MS.gene65775:CDS | 20.0% |
!! | AAGAAATCGTATAAATTAGA+CGG | + | chr3.2:8490300-8490319 | MS.gene65775:intron | 20.0% |
!! | ATAAAAAAAATGATTACCTG+TGG | - | chr3.2:8490267-8490286 | None:intergenic | 20.0% |
!! | ATATAAAATATTAAACGAGG+AGG | + | chr3.2:8490194-8490213 | MS.gene65775:CDS | 20.0% |
!! | TAAAAAAAATGATTACCTGT+GGG | - | chr3.2:8490266-8490285 | None:intergenic | 20.0% |
!! | TAAATCAAATACTTCGTTTA+TGG | + | chr3.2:8490587-8490606 | MS.gene65775:CDS | 20.0% |
!!! | AAAGTGTTACTTTATTTAGT+CGG | + | chr3.2:8490612-8490631 | MS.gene65775:CDS | 20.0% |
!!! | AAGAGTATATTATTAAGTGT+TGG | + | chr3.2:8490513-8490532 | MS.gene65775:CDS | 20.0% |
! | AAACAAAACATCATTAGACA+TGG | + | chr3.2:8490473-8490492 | MS.gene65775:CDS | 25.0% |
! | AACATGAATAGCACAAATAA+TGG | + | chr3.2:8489657-8489676 | MS.gene65775:CDS | 25.0% |
! | CATCTTGAATTACTGTATAA+AGG | - | chr3.2:8489725-8489744 | None:intergenic | 25.0% |
! | CTCAAAACAAATAAACAAAG+AGG | + | chr3.2:8490156-8490175 | MS.gene65775:CDS | 25.0% |
! | TTAAATTTATGTGCAAGTGT+GGG | - | chr3.2:8490570-8490589 | None:intergenic | 25.0% |
! | TTTAAATTTATGTGCAAGTG+TGG | - | chr3.2:8490571-8490590 | None:intergenic | 25.0% |
!!! | AGGTTTTAACTTCATAATCT+CGG | - | chr3.2:8489838-8489857 | None:intergenic | 25.0% |
AACAAATAAACAAAGAGGTG+CGG | + | chr3.2:8490161-8490180 | MS.gene65775:CDS | 30.0% | |
AACATATTGAAATAAGCTCC+TGG | - | chr3.2:8490834-8490853 | None:intergenic | 30.0% | |
AATCGTATAAATTAGACGGA+TGG | + | chr3.2:8490304-8490323 | MS.gene65775:intron | 30.0% | |
AGTTAAAACCTTCATTTGCT+TGG | + | chr3.2:8489847-8489866 | MS.gene65775:CDS | 30.0% | |
CCTTAGAAACGATATATCAA+AGG | + | chr3.2:8490635-8490654 | MS.gene65775:CDS | 30.0% | |
CCTTTGATATATCGTTTCTA+AGG | - | chr3.2:8490638-8490657 | None:intergenic | 30.0% | |
GCAAAACAACCAAAAAAGTA+TGG | + | chr3.2:8489911-8489930 | MS.gene65775:intron | 30.0% | |
GTCAAGTATTCAATAGATTC+CGG | - | chr3.2:8490060-8490079 | None:intergenic | 30.0% | |
TATAAATTAGACGGATGGTT+TGG | + | chr3.2:8490309-8490328 | MS.gene65775:intron | 30.0% | |
TATTAATTTCATGGTAGCAC+AGG | + | chr3.2:8490398-8490417 | MS.gene65775:intron | 30.0% | |
TCTATCATCTCCAAAATGAA+TGG | - | chr3.2:8489750-8489769 | None:intergenic | 30.0% | |
TGTGGAAGAAATAGTAGAAT+TGG | - | chr3.2:8490787-8490806 | None:intergenic | 30.0% | |
! | AATTCTACTATTTCTTCCAC+AGG | + | chr3.2:8490786-8490805 | MS.gene65775:CDS | 30.0% |
! | CTTCATTTTGCAAGTCAAAT+TGG | + | chr3.2:8489997-8490016 | MS.gene65775:intron | 30.0% |
! | TAATTTTCTCTTTGCTTGTC+CGG | + | chr3.2:8490038-8490057 | MS.gene65775:CDS | 30.0% |
! | TCAAGATGATCCATTCATTT+TGG | + | chr3.2:8489737-8489756 | MS.gene65775:CDS | 30.0% |
! | TCCAATTGTTGATAAAGACT+AGG | + | chr3.2:8490424-8490443 | MS.gene65775:CDS | 30.0% |
! | TCCTAGTCTTTATCAACAAT+TGG | - | chr3.2:8490428-8490447 | None:intergenic | 30.0% |
! | TTTAGTTTCCAAGCAAATGA+AGG | - | chr3.2:8489858-8489877 | None:intergenic | 30.0% |
!! | ATTTGACTTGCAAAATGAAG+AGG | - | chr3.2:8489997-8490016 | None:intergenic | 30.0% |
!!! | TTTTAACTTCATAATCTCGG+AGG | - | chr3.2:8489835-8489854 | None:intergenic | 30.0% |
ATAGATGCAGCAATATGCAA+AGG | - | chr3.2:8489795-8489814 | None:intergenic | 35.0% | |
ATATTTATTCTGATCCCAGC+TGG | + | chr3.2:8490897-8490916 | MS.gene65775:intron | 35.0% | |
CTATTGAATACTTGACTGTG+AGG | + | chr3.2:8490064-8490083 | MS.gene65775:CDS | 35.0% | |
GCTTGGAAACTAAATCAACA+AGG | + | chr3.2:8489864-8489883 | MS.gene65775:CDS | 35.0% | |
GTTAGAGTTGAAGGAAGAAA+TGG | + | chr3.2:8489966-8489985 | MS.gene65775:intron | 35.0% | |
TCGCTTTGTGAACTTCAATA+AGG | + | chr3.2:8489938-8489957 | MS.gene65775:intron | 35.0% | |
TGCAAAGGAGTTTCAACAAA+TGG | - | chr3.2:8489780-8489799 | None:intergenic | 35.0% | |
TGTTATGAATGAACAGTACG+AGG | + | chr3.2:8490110-8490129 | MS.gene65775:CDS | 35.0% | |
TTCTTCCTTCAACTCTAACA+AGG | - | chr3.2:8489965-8489984 | None:intergenic | 35.0% | |
TTGCATATTGCTGCATCTAT+GGG | + | chr3.2:8489795-8489814 | MS.gene65775:CDS | 35.0% | |
TTTGCATATTGCTGCATCTA+TGG | + | chr3.2:8489794-8489813 | MS.gene65775:CDS | 35.0% | |
! | TTTTGCATAGCAAGATGGAT+AGG | - | chr3.2:8489897-8489916 | None:intergenic | 35.0% |
!!! | AGCGAGTAACCATACTTTTT+TGG | - | chr3.2:8489923-8489942 | None:intergenic | 35.0% |
AAATTTGTGCGCGAAGAACT+TGG | + | chr3.2:8490449-8490468 | MS.gene65775:CDS | 40.0% | |
AAGGACCTTGTTAGAGTTGA+AGG | + | chr3.2:8489957-8489976 | MS.gene65775:intron | 40.0% | |
ATTTCTTCCACAGGAAATGC+TGG | + | chr3.2:8490795-8490814 | MS.gene65775:CDS | 40.0% | |
CTTCAGCTGCAACTTTCAAT+CGG | - | chr3.2:8489686-8489705 | None:intergenic | 40.0% | |
TCATAATCTCGGAGGCAAAT+TGG | - | chr3.2:8489827-8489846 | None:intergenic | 40.0% | |
TTAAACGAGGAGGATGAGAA+TGG | + | chr3.2:8490204-8490223 | MS.gene65775:CDS | 40.0% | |
TTAACCTGATATACTCCACC+CGG | - | chr3.2:8490732-8490751 | None:intergenic | 40.0% | |
TTTCTTCCACAGGAAATGCT+GGG | + | chr3.2:8490796-8490815 | MS.gene65775:CDS | 40.0% | |
!! | GGTTGTTTTGCATAGCAAGA+TGG | - | chr3.2:8489902-8489921 | None:intergenic | 40.0% |
ATGTGCAAGTGTGGGTGTAT+TGG | - | chr3.2:8490562-8490581 | None:intergenic | 45.0% | |
CAAAGGAGCAACACAACACT+TGG | + | chr3.2:8490652-8490671 | MS.gene65775:CDS | 45.0% | |
CACAGGAAATGCTGGGAAAT+CGG | + | chr3.2:8490803-8490822 | MS.gene65775:CDS | 45.0% | |
TGTTGGAGCAAAACCTAGCT+CGG | + | chr3.2:8490530-8490549 | MS.gene65775:CDS | 45.0% | |
TTGAAAGTTGCAGCTGAAGC+AGG | + | chr3.2:8489687-8489706 | MS.gene65775:CDS | 45.0% | |
TTTATTCTGATCCCAGCTGG+TGG | + | chr3.2:8490900-8490919 | MS.gene65775:intron | 45.0% | |
! | AGACATTGCCGATTGAAAGG+TGG | - | chr3.2:8490706-8490725 | None:intergenic | 45.0% |
! | TAGCGCTGAAATGTGCAAGA+TGG | - | chr3.2:8490235-8490254 | None:intergenic | 45.0% |
! | TGGAGACATTGCCGATTGAA+AGG | - | chr3.2:8490709-8490728 | None:intergenic | 45.0% |
CGATTTCCCAGCATTTCCTG+TGG | - | chr3.2:8490805-8490824 | None:intergenic | 50.0% | |
TCAATCGGCAATGTCTCCAC+CGG | + | chr3.2:8490710-8490729 | MS.gene65775:CDS | 50.0% | |
TGCAACCGCCACCTTTCAAT+CGG | + | chr3.2:8490695-8490714 | MS.gene65775:CDS | 50.0% | |
! | CATTGCCGATTGAAAGGTGG+CGG | - | chr3.2:8490703-8490722 | None:intergenic | 50.0% |
! | GTATTGGTGACTTCCGAGCT+AGG | - | chr3.2:8490546-8490565 | None:intergenic | 50.0% |
ACCTGATATACTCCACCCGG+TGG | - | chr3.2:8490729-8490748 | None:intergenic | 55.0% | |
CAATCGGCAATGTCTCCACC+GGG | + | chr3.2:8490711-8490730 | MS.gene65775:CDS | 55.0% | |
GAGGCCCTTCAAGTGCTTCT+CGG | + | chr3.2:8490129-8490148 | MS.gene65775:CDS | 55.0% | |
TCCACCGGGTGGAGTATATC+AGG | + | chr3.2:8490725-8490744 | MS.gene65775:CDS | 55.0% | |
!! | CCAGCCGAGAAGCACTTGAA+GGG | - | chr3.2:8490136-8490155 | None:intergenic | 55.0% |
AGCGCTAAGTAGCGACCCAC+AGG | + | chr3.2:8490248-8490267 | MS.gene65775:CDS | 60.0% | |
CCCTTCAAGTGCTTCTCGGC+TGG | + | chr3.2:8490133-8490152 | MS.gene65775:CDS | 60.0% | |
GCTGGGAAATCGGTCTTGCC+AGG | + | chr3.2:8490813-8490832 | MS.gene65775:intron | 60.0% | |
!! | GCCAGCCGAGAAGCACTTGA+AGG | - | chr3.2:8490137-8490156 | None:intergenic | 60.0% |
TCGGCAATGTCTCCACCGGG+TGG | + | chr3.2:8490714-8490733 | MS.gene65775:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 8489645 | 8490930 | 8489645 | ID=MS.gene65775 |
chr3.2 | mRNA | 8489645 | 8490930 | 8489645 | ID=MS.gene65775.t1;Parent=MS.gene65775 |
chr3.2 | exon | 8489645 | 8489927 | 8489645 | ID=MS.gene65775.t1.exon1;Parent=MS.gene65775.t1 |
chr3.2 | CDS | 8489645 | 8489927 | 8489645 | ID=cds.MS.gene65775.t1;Parent=MS.gene65775.t1 |
chr3.2 | exon | 8490037 | 8490269 | 8490037 | ID=MS.gene65775.t1.exon2;Parent=MS.gene65775.t1 |
chr3.2 | CDS | 8490037 | 8490269 | 8490037 | ID=cds.MS.gene65775.t1;Parent=MS.gene65775.t1 |
chr3.2 | exon | 8490420 | 8490824 | 8490420 | ID=MS.gene65775.t1.exon3;Parent=MS.gene65775.t1 |
chr3.2 | CDS | 8490420 | 8490824 | 8490420 | ID=cds.MS.gene65775.t1;Parent=MS.gene65775.t1 |
chr3.2 | exon | 8490916 | 8490930 | 8490916 | ID=MS.gene65775.t1.exon4;Parent=MS.gene65775.t1 |
chr3.2 | CDS | 8490916 | 8490930 | 8490916 | ID=cds.MS.gene65775.t1;Parent=MS.gene65775.t1 |
Gene Sequence |
Protein sequence |