Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26021.t1 | KEH22490.1 | 93.3 | 312 | 21 | 0 | 1 | 312 | 1 | 312 | 2.10E-104 | 389 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26021.t1 | Q8GYH5 | 47.4 | 302 | 150 | 3 | 8 | 302 | 4 | 303 | 3.4e-10 | 67.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26021.t1 | A0A072U9L0 | 93.3 | 312 | 21 | 0 | 1 | 312 | 1 | 312 | 1.5e-104 | 389.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26021.t1 | MTR_7g451420 | 95.513 | 312 | 14 | 0 | 1 | 312 | 1 | 312 | 0.0 | 612 |
MS.gene26021.t1 | MTR_8g073260 | 66.230 | 305 | 103 | 0 | 8 | 312 | 10 | 314 | 1.10e-144 | 416 |
MS.gene26021.t1 | MTR_3g016210 | 63.354 | 322 | 107 | 1 | 2 | 312 | 3 | 324 | 1.11e-142 | 410 |
MS.gene26021.t1 | MTR_8g072510 | 65.595 | 311 | 107 | 0 | 2 | 312 | 3 | 313 | 1.68e-142 | 410 |
MS.gene26021.t1 | MTR_8g039620 | 66.881 | 311 | 100 | 1 | 5 | 312 | 10 | 320 | 4.13e-142 | 409 |
MS.gene26021.t1 | MTR_1g059930 | 66.667 | 306 | 102 | 0 | 6 | 311 | 9 | 314 | 1.60e-141 | 407 |
MS.gene26021.t1 | MTR_8g467780 | 64.762 | 315 | 101 | 2 | 8 | 312 | 10 | 324 | 7.01e-141 | 406 |
MS.gene26021.t1 | MTR_8g066670 | 66.773 | 313 | 102 | 2 | 1 | 312 | 1067 | 1378 | 3.35e-135 | 418 |
MS.gene26021.t1 | MTR_7g021090 | 64.103 | 312 | 106 | 2 | 1 | 312 | 1 | 306 | 5.24e-133 | 385 |
MS.gene26021.t1 | MTR_8g069880 | 64.516 | 310 | 108 | 2 | 4 | 312 | 2 | 310 | 2.26e-128 | 375 |
MS.gene26021.t1 | MTR_8g068990 | 61.736 | 311 | 100 | 4 | 6 | 312 | 9 | 304 | 4.29e-125 | 366 |
MS.gene26021.t1 | MTR_8g062410 | 63.462 | 312 | 106 | 2 | 2 | 312 | 3 | 307 | 6.57e-125 | 365 |
MS.gene26021.t1 | MTR_8g040930 | 65.530 | 264 | 88 | 1 | 52 | 312 | 2 | 265 | 2.48e-117 | 343 |
MS.gene26021.t1 | MTR_8g041240 | 65.530 | 264 | 88 | 1 | 52 | 312 | 2 | 265 | 2.48e-117 | 343 |
MS.gene26021.t1 | MTR_3g105650 | 50.968 | 310 | 144 | 2 | 7 | 309 | 3 | 311 | 2.72e-102 | 307 |
MS.gene26021.t1 | MTR_8g073275 | 47.840 | 324 | 96 | 5 | 52 | 312 | 2 | 315 | 2.49e-87 | 270 |
MS.gene26021.t1 | MTR_7g117620 | 26.586 | 331 | 202 | 8 | 9 | 314 | 85 | 399 | 2.01e-20 | 92.0 |
MS.gene26021.t1 | MTR_1g069110 | 25.705 | 319 | 202 | 9 | 5 | 313 | 14 | 307 | 1.71e-18 | 86.3 |
MS.gene26021.t1 | MTR_1g115575 | 26.606 | 327 | 198 | 9 | 9 | 309 | 135 | 445 | 3.74e-18 | 85.5 |
MS.gene26021.t1 | MTR_7g099580 | 24.127 | 315 | 184 | 7 | 6 | 313 | 9 | 275 | 1.15e-17 | 82.8 |
MS.gene26021.t1 | MTR_4g062100 | 25.538 | 325 | 203 | 7 | 9 | 308 | 74 | 384 | 3.11e-17 | 82.8 |
MS.gene26021.t1 | MTR_4g062100 | 26.415 | 159 | 115 | 1 | 4 | 162 | 138 | 294 | 5.47e-11 | 63.9 |
MS.gene26021.t1 | MTR_7g099570 | 27.236 | 246 | 165 | 3 | 1 | 241 | 1 | 237 | 4.11e-16 | 79.3 |
MS.gene26021.t1 | MTR_2g096190 | 24.923 | 325 | 205 | 8 | 9 | 308 | 70 | 380 | 6.59e-16 | 78.6 |
MS.gene26021.t1 | MTR_2g096190 | 24.590 | 183 | 127 | 2 | 5 | 187 | 101 | 272 | 5.46e-11 | 63.9 |
MS.gene26021.t1 | MTR_2g101320 | 27.189 | 217 | 140 | 4 | 40 | 248 | 137 | 343 | 1.76e-15 | 77.4 |
MS.gene26021.t1 | MTR_8g105260 | 26.316 | 190 | 127 | 2 | 44 | 232 | 101 | 278 | 6.44e-13 | 69.7 |
MS.gene26021.t1 | MTR_7g100390 | 24.845 | 322 | 202 | 8 | 12 | 308 | 56 | 362 | 1.32e-12 | 68.6 |
MS.gene26021.t1 | MTR_7g100390 | 29.730 | 148 | 100 | 3 | 4 | 150 | 117 | 261 | 2.16e-12 | 68.2 |
MS.gene26021.t1 | MTR_2g101310 | 27.895 | 190 | 126 | 3 | 40 | 228 | 137 | 316 | 5.74e-12 | 67.0 |
MS.gene26021.t1 | MTR_2g101310 | 27.895 | 190 | 126 | 3 | 40 | 228 | 137 | 316 | 1.22e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26021.t1 | AT4G10720 | 42.405 | 316 | 170 | 3 | 8 | 313 | 4 | 317 | 5.47e-78 | 244 |
MS.gene26021.t1 | AT4G10720 | 42.405 | 316 | 170 | 3 | 8 | 313 | 4 | 317 | 1.15e-77 | 244 |
MS.gene26021.t1 | AT1G14500 | 38.994 | 318 | 181 | 3 | 8 | 314 | 4 | 319 | 1.78e-68 | 220 |
MS.gene26021.t1 | AT5G54620 | 40.523 | 306 | 175 | 2 | 8 | 306 | 4 | 309 | 9.75e-68 | 218 |
MS.gene26021.t1 | AT5G15500 | 39.677 | 310 | 179 | 3 | 9 | 310 | 6 | 315 | 1.99e-67 | 218 |
MS.gene26021.t1 | AT1G14480 | 38.050 | 318 | 187 | 2 | 8 | 315 | 4 | 321 | 3.08e-65 | 212 |
MS.gene26021.t1 | AT5G54610 | 37.171 | 304 | 178 | 5 | 8 | 302 | 4 | 303 | 6.09e-58 | 192 |
MS.gene26021.t1 | AT1G14480 | 37.013 | 308 | 161 | 5 | 8 | 315 | 4 | 278 | 8.63e-53 | 179 |
MS.gene26021.t1 | AT5G15500 | 35.407 | 209 | 127 | 3 | 110 | 310 | 1 | 209 | 4.94e-31 | 120 |
MS.gene26021.t1 | AT5G51160 | 29.104 | 268 | 158 | 5 | 69 | 313 | 41 | 299 | 4.67e-29 | 116 |
MS.gene26021.t1 | AT2G01680 | 28.708 | 209 | 129 | 3 | 44 | 244 | 97 | 293 | 2.88e-18 | 85.9 |
MS.gene26021.t1 | AT4G03500 | 25.723 | 311 | 175 | 10 | 9 | 316 | 251 | 508 | 4.00e-18 | 85.5 |
MS.gene26021.t1 | AT4G03500 | 25.723 | 311 | 175 | 10 | 9 | 316 | 228 | 485 | 4.55e-18 | 85.5 |
MS.gene26021.t1 | AT4G03500 | 25.723 | 311 | 175 | 10 | 9 | 316 | 228 | 485 | 4.55e-18 | 85.5 |
MS.gene26021.t1 | AT3G12360 | 25.926 | 324 | 204 | 7 | 9 | 309 | 133 | 443 | 1.55e-16 | 80.9 |
MS.gene26021.t1 | AT3G12360 | 25.926 | 324 | 204 | 7 | 9 | 309 | 121 | 431 | 1.93e-16 | 80.5 |
MS.gene26021.t1 | AT1G07710 | 29.437 | 231 | 147 | 4 | 9 | 237 | 70 | 286 | 2.95e-16 | 79.7 |
MS.gene26021.t1 | AT1G07710 | 29.437 | 231 | 147 | 4 | 9 | 237 | 70 | 286 | 2.95e-16 | 79.7 |
MS.gene26021.t1 | AT1G05640 | 25.970 | 335 | 196 | 12 | 9 | 313 | 157 | 469 | 3.85e-16 | 79.7 |
MS.gene26021.t1 | AT2G31820 | 25.220 | 341 | 210 | 11 | 1 | 313 | 182 | 505 | 7.08e-16 | 79.0 |
MS.gene26021.t1 | AT4G03460 | 25.828 | 302 | 168 | 9 | 11 | 309 | 238 | 486 | 4.97e-15 | 76.3 |
MS.gene26021.t1 | AT4G03460 | 25.828 | 302 | 168 | 9 | 11 | 309 | 206 | 454 | 5.10e-15 | 76.3 |
MS.gene26021.t1 | AT5G54710 | 24.259 | 371 | 210 | 12 | 1 | 313 | 140 | 497 | 7.13e-15 | 75.9 |
MS.gene26021.t1 | AT5G54710 | 23.720 | 371 | 212 | 11 | 1 | 313 | 95 | 452 | 7.44e-15 | 75.9 |
MS.gene26021.t1 | AT1G34050 | 25.573 | 262 | 171 | 6 | 65 | 313 | 174 | 424 | 1.00e-14 | 75.1 |
MS.gene26021.t1 | AT3G09550 | 25.000 | 324 | 207 | 6 | 9 | 309 | 154 | 464 | 1.91e-14 | 74.3 |
MS.gene26021.t1 | AT3G09550 | 25.000 | 324 | 207 | 6 | 9 | 309 | 147 | 457 | 2.08e-14 | 74.3 |
MS.gene26021.t1 | AT3G09550 | 25.000 | 324 | 207 | 6 | 9 | 309 | 147 | 457 | 2.08e-14 | 74.3 |
MS.gene26021.t1 | AT1G10340 | 23.441 | 401 | 199 | 12 | 9 | 313 | 41 | 429 | 1.24e-13 | 72.0 |
MS.gene26021.t1 | AT1G03670 | 27.966 | 236 | 141 | 8 | 88 | 316 | 266 | 479 | 1.70e-13 | 71.6 |
MS.gene26021.t1 | AT5G02620 | 26.577 | 222 | 149 | 3 | 9 | 229 | 60 | 268 | 2.32e-13 | 71.2 |
MS.gene26021.t1 | AT5G02620 | 26.577 | 222 | 149 | 3 | 9 | 229 | 60 | 268 | 2.32e-13 | 71.2 |
MS.gene26021.t1 | AT5G02620 | 26.577 | 222 | 149 | 3 | 9 | 229 | 60 | 268 | 2.32e-13 | 71.2 |
MS.gene26021.t1 | AT1G10340 | 23.210 | 405 | 199 | 12 | 9 | 313 | 41 | 433 | 5.03e-13 | 70.1 |
MS.gene26021.t1 | AT4G03490 | 26.984 | 315 | 157 | 13 | 9 | 308 | 211 | 467 | 3.35e-12 | 67.8 |
MS.gene26021.t1 | AT4G03490 | 26.984 | 315 | 157 | 13 | 9 | 308 | 201 | 457 | 3.88e-12 | 67.4 |
MS.gene26021.t1 | AT4G03490 | 26.984 | 315 | 157 | 13 | 9 | 308 | 211 | 467 | 4.04e-12 | 67.4 |
MS.gene26021.t1 | AT5G54700 | 25.893 | 224 | 124 | 6 | 101 | 318 | 23 | 210 | 6.60e-12 | 66.2 |
MS.gene26021.t1 | AT4G03480 | 23.585 | 318 | 208 | 9 | 9 | 309 | 316 | 615 | 1.52e-11 | 65.9 |
MS.gene26021.t1 | AT4G03480 | 23.585 | 318 | 208 | 9 | 9 | 309 | 319 | 618 | 1.58e-11 | 65.5 |
MS.gene26021.t1 | AT5G02620 | 25.381 | 197 | 134 | 2 | 9 | 205 | 60 | 243 | 2.63e-11 | 64.7 |
MS.gene26021.t1 | AT5G02620 | 25.381 | 197 | 134 | 2 | 9 | 205 | 60 | 243 | 2.63e-11 | 64.7 |
MS.gene26021.t1 | AT4G03450 | 26.009 | 223 | 133 | 8 | 108 | 318 | 290 | 492 | 6.17e-11 | 63.9 |
MS.gene26021.t1 | AT4G03450 | 26.009 | 223 | 133 | 8 | 108 | 318 | 290 | 492 | 6.37e-11 | 63.9 |
Find 71 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATTTGAAGGCAAAGAATT+TGG | 0.216334 | 7.3:+54047282 | MS.gene26021:CDS |
AAGATCAAAGACCACTATTA+TGG | 0.294629 | 7.3:+54047420 | MS.gene26021:CDS |
TCCCGTTGGTGGAGTTTATC+AGG | 0.296151 | 7.3:+54047558 | MS.gene26021:CDS |
ATCTCCTTGTTTGCTTTGTT+AGG | 0.311633 | 7.3:+54046336 | MS.gene26021:CDS |
CTTCGATTGTTGGTAAGTAC+TGG | 0.324415 | 7.3:+54047256 | MS.gene26021:CDS |
AGCTTTCAGTTTATCAAGAT+TGG | 0.345596 | 7.3:-54045868 | None:intergenic |
AGCGAGAAACCATCCTCTTT+TGG | 0.350553 | 7.3:-54046115 | None:intergenic |
CAATTTGAATTACTGCATAA+AGG | 0.361525 | 7.3:-54045917 | None:intergenic |
TAGCGCATAAATGTGCAAAA+TGG | 0.374999 | 7.3:-54046429 | None:intergenic |
AAAGACCTTGTTCGAGTTCA+AGG | 0.377835 | 7.3:+54046152 | MS.gene26021:CDS |
CTTTGCATATCGCCGCATCT+AGG | 0.387295 | 7.3:+54045988 | MS.gene26021:CDS |
GGGAGTCAGCGTTGATTGAT+AGG | 0.399734 | 7.3:-54047539 | None:intergenic |
CGTCTATCCCACAACCTTGA+TGG | 0.399974 | 7.3:-54047997 | None:intergenic |
ATTTGAAACCTTCATTTGCT+TGG | 0.424279 | 7.3:+54046042 | MS.gene26021:CDS |
AGCACAGGCGCTTCGATTGT+TGG | 0.424869 | 7.3:+54047246 | MS.gene26021:intron |
TCGCATTGAAAGAAATATAT+CGG | 0.432489 | 7.3:+54047465 | MS.gene26021:CDS |
TTTGCATATCGCCGCATCTA+GGG | 0.439653 | 7.3:+54045989 | MS.gene26021:CDS |
GCATCTCCGGTTTGCCATTG+AGG | 0.441755 | 7.3:+54046013 | MS.gene26021:CDS |
CGAATCTATAATCTCTAGAA+TGG | 0.451551 | 7.3:-54045946 | None:intergenic |
TTTCAAATTCATAACCTCAA+TGG | 0.456133 | 7.3:-54046027 | None:intergenic |
CTTCATCTTGCAAGTCAAAT+CGG | 0.456236 | 7.3:+54046194 | MS.gene26021:CDS |
ACCTGATAAACTCCACCAAC+GGG | 0.462309 | 7.3:-54047559 | None:intergenic |
GAAACCTTCATTTGCTTGGA+AGG | 0.463467 | 7.3:+54046046 | MS.gene26021:CDS |
CCCCACAGTCACATCTTGAA+TGG | 0.468981 | 7.3:-54046261 | None:intergenic |
GTCTATCCCACAACCTTGAT+GGG | 0.474858 | 7.3:-54047996 | None:intergenic |
TTTACCTTCCAAGCAAATGA+AGG | 0.484047 | 7.3:-54046050 | None:intergenic |
CTGAAAGCTGCAGCTGAAGC+GGG | 0.490793 | 7.3:+54045882 | MS.gene26021:CDS |
TCATAACCTCAATGGCAAAC+CGG | 0.496377 | 7.3:-54046019 | None:intergenic |
AGAAACACCCATCAAGGTTG+TGG | 0.498193 | 7.3:+54047989 | MS.gene26021:CDS |
AAGAGTATATTATTTAGTGC+TGG | 0.498908 | 7.3:+54047346 | MS.gene26021:CDS |
GTTAGGAGAAATATCGAAAG+AGG | 0.499854 | 7.3:+54046353 | MS.gene26021:CDS |
AAAACCTAGCTTAGAAGTCA+TGG | 0.503544 | 7.3:+54047372 | MS.gene26021:CDS |
CTATGCAAAATGACCAAAAG+AGG | 0.517456 | 7.3:+54046102 | MS.gene26021:CDS |
GTCACATCTTGAATGGAATC+CGG | 0.521024 | 7.3:-54046254 | None:intergenic |
TTGCATATCGCCGCATCTAG+GGG | 0.527689 | 7.3:+54045990 | MS.gene26021:CDS |
TCAACGCTGACTCCCGTTGG+TGG | 0.529986 | 7.3:+54047547 | MS.gene26021:CDS |
AAGTACTGGGATAAATTTGA+AGG | 0.534665 | 7.3:+54047270 | MS.gene26021:CDS |
CGGAGAAGCAACGCAACACT+TGG | 0.536689 | 7.3:+54047485 | MS.gene26021:CDS |
TCCATTCAAGATGTGACTGT+GGG | 0.544369 | 7.3:+54046260 | MS.gene26021:CDS |
TCTTAGTTTATCTGCAAGTG+TGG | 0.544657 | 7.3:-54047401 | None:intergenic |
TTCGATTGTTGGTAAGTACT+GGG | 0.548072 | 7.3:+54047257 | MS.gene26021:CDS |
TTCTCCTAACAAAGCAAACA+AGG | 0.552244 | 7.3:-54046340 | None:intergenic |
ACTGAAAGCTGCAGCTGAAG+CGG | 0.553330 | 7.3:+54045881 | MS.gene26021:CDS |
ATTTGACTTGCAAGATGAAG+AGG | 0.554003 | 7.3:-54046191 | None:intergenic |
AAGACCTTGTTCGAGTTCAA+GGG | 0.554891 | 7.3:+54046153 | MS.gene26021:CDS |
AATAGGAGAAACACCCATCA+AGG | 0.555815 | 7.3:+54047983 | MS.gene26021:intron |
GTTCGAGTTCAAGGGAGAGA+AGG | 0.562197 | 7.3:+54046161 | MS.gene26021:CDS |
TGCGCTAAGTAACGAGCCAC+AGG | 0.563366 | 7.3:+54046445 | MS.gene26021:CDS |
GAAACACCCATCAAGGTTGT+GGG | 0.564419 | 7.3:+54047990 | MS.gene26021:CDS |
TATACTCTTGTTCTCTAGAG+TGG | 0.567180 | 7.3:-54047332 | None:intergenic |
CTCTCCCTTGAACTCGAACA+AGG | 0.580165 | 7.3:-54046157 | None:intergenic |
GCATCCATGACTTCTAAGCT+AGG | 0.580948 | 7.3:-54047376 | None:intergenic |
CTTAGTTTATCTGCAAGTGT+GGG | 0.592849 | 7.3:-54047400 | None:intergenic |
GCAAAATGACCAAAAGAGGA+TGG | 0.601826 | 7.3:+54046106 | MS.gene26021:CDS |
CTAGATGCGGCGATATGCAA+AGG | 0.606329 | 7.3:-54045987 | None:intergenic |
CATCAAGGTTGTGGGATAGA+CGG | 0.611317 | 7.3:+54047998 | MS.gene26021:CDS |
CAATCAACGCTGACTCCCGT+TGG | 0.612251 | 7.3:+54047544 | MS.gene26021:CDS |
AACCTGATAAACTCCACCAA+CGG | 0.614968 | 7.3:-54047560 | None:intergenic |
CATACTAAATCACAAGGATG+AGG | 0.615450 | 7.3:+54046397 | MS.gene26021:CDS |
TTCCATTCAAGATGTGACTG+TGG | 0.644137 | 7.3:+54046259 | MS.gene26021:CDS |
GCTTGGAAGGTAAATCCGCA+AGG | 0.645305 | 7.3:+54046059 | MS.gene26021:CDS |
CCATTCAAGATGTGACTGTG+GGG | 0.654082 | 7.3:+54046261 | MS.gene26021:CDS |
TGCATATCGCCGCATCTAGG+GGG | 0.655530 | 7.3:+54045991 | MS.gene26021:CDS |
CATTCAAGATGTGACTGTGG+GGG | 0.655813 | 7.3:+54046262 | MS.gene26021:CDS |
ACTCTTGTTCTCTAGAGTGG+CGG | 0.656146 | 7.3:-54047329 | None:intergenic |
AGTCAGCGTTGATTGATAGG+TGG | 0.659373 | 7.3:-54047536 | None:intergenic |
TTTGCATAGCGAGATGAATG+GGG | 0.662734 | 7.3:-54046088 | None:intergenic |
TGAATGGGGCTGAATCCTTG+CGG | 0.670822 | 7.3:-54046074 | None:intergenic |
ATATAACATACTAAATCACA+AGG | 0.679043 | 7.3:+54046391 | MS.gene26021:CDS |
TGAAACTGCACTGCATATTG+CGG | 0.683454 | 7.3:+54046286 | MS.gene26021:CDS |
ATTCAAGATGTGACTGTGGG+GGG | 0.686049 | 7.3:+54046263 | MS.gene26021:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTAAATATTGAAATCT+CGG | - | chr7.3:54046660-54046679 | None:intergenic | 10.0% |
!! | AACGAAGAAATAATATAAAA+GGG | - | chr7.3:54046835-54046854 | None:intergenic | 15.0% |
!! | CACATATATTATGTATATAA+AGG | + | chr7.3:54046962-54046981 | MS.gene26021:intron | 15.0% |
!! | TGAAATTCTATTCATTTATA+CGG | - | chr7.3:54046745-54046764 | None:intergenic | 15.0% |
!!! | GTTATTTATTTTTTATTGAC+AGG | - | chr7.3:54046860-54046879 | None:intergenic | 15.0% |
!! | AAAACTTCTAAATATATGAC+AGG | - | chr7.3:54046477-54046496 | None:intergenic | 20.0% |
!! | ATATAACATACTAAATCACA+AGG | + | chr7.3:54046391-54046410 | MS.gene26021:CDS | 20.0% |
!! | CAACGAAGAAATAATATAAA+AGG | - | chr7.3:54046836-54046855 | None:intergenic | 20.0% |
!! | TTCATCTCTTAAGTTATATA+AGG | + | chr7.3:54046543-54046562 | MS.gene26021:intron | 20.0% |
! | AAATTTGAAGGCAAAGAATT+TGG | + | chr7.3:54047282-54047301 | MS.gene26021:CDS | 25.0% |
! | AGATAAAACATTGTTGCAAT+AGG | + | chr7.3:54047966-54047985 | MS.gene26021:intron | 25.0% |
! | ATCATGGTTTAATTAGATTG+CGG | - | chr7.3:54047135-54047154 | None:intergenic | 25.0% |
! | CAATCTAATTAAACCATGAT+AGG | + | chr7.3:54047135-54047154 | MS.gene26021:intron | 25.0% |
! | CAATTTGAATTACTGCATAA+AGG | - | chr7.3:54045920-54045939 | None:intergenic | 25.0% |
! | GGTGAAAAATAAAAACTTTG+AGG | + | chr7.3:54046307-54046326 | MS.gene26021:CDS | 25.0% |
! | TCGCATTGAAAGAAATATAT+CGG | + | chr7.3:54047465-54047484 | MS.gene26021:CDS | 25.0% |
! | TTAGTATTGCTATAGTTGAT+AGG | - | chr7.3:54047717-54047736 | None:intergenic | 25.0% |
! | TTTCAAATTCATAACCTCAA+TGG | - | chr7.3:54046030-54046049 | None:intergenic | 25.0% |
!! | AAGAGTATATTATTTAGTGC+TGG | + | chr7.3:54047346-54047365 | MS.gene26021:CDS | 25.0% |
!! | CAACATTTTATCCATAATAG+TGG | - | chr7.3:54047434-54047453 | None:intergenic | 25.0% |
!! | CACATTTTCTTGCAATATAA+AGG | - | chr7.3:54047028-54047047 | None:intergenic | 25.0% |
!! | TAAATCTTGAGTTGTCAATT+CGG | - | chr7.3:54046578-54046597 | None:intergenic | 25.0% |
!! | TTGCAACAATGTTTTATCTA+TGG | - | chr7.3:54047965-54047984 | None:intergenic | 25.0% |
!! | TTTAGTGTACTACAGATTTT+TGG | + | chr7.3:54047909-54047928 | MS.gene26021:intron | 25.0% |
!!! | TAAATTACTTTTTGCTTGTC+CGG | + | chr7.3:54046235-54046254 | MS.gene26021:CDS | 25.0% |
!!! | TTTTTAGTATTGTTGCAACA+GGG | + | chr7.3:54047872-54047891 | MS.gene26021:intron | 25.0% |
!!! | TTTTTTAGTATTGTTGCAAC+AGG | + | chr7.3:54047871-54047890 | MS.gene26021:intron | 25.0% |
AAGATCAAAGACCACTATTA+TGG | + | chr7.3:54047420-54047439 | MS.gene26021:CDS | 30.0% | |
AATATTCACAAGTAGTGAAC+TGG | - | chr7.3:54047171-54047190 | None:intergenic | 30.0% | |
ACTTCTAAATATATGACAGG+AGG | - | chr7.3:54046474-54046493 | None:intergenic | 30.0% | |
AGCTTTCAGTTTATCAAGAT+TGG | - | chr7.3:54045871-54045890 | None:intergenic | 30.0% | |
ATCATAACATTGTCATGTGT+AGG | - | chr7.3:54047835-54047854 | None:intergenic | 30.0% | |
TCATAACATTGTCATGTGTA+GGG | - | chr7.3:54047834-54047853 | None:intergenic | 30.0% | |
! | ATAGAGAGAAGGTATAACAA+AGG | - | chr7.3:54047801-54047820 | None:intergenic | 30.0% |
! | ATTTGAAACCTTCATTTGCT+TGG | + | chr7.3:54046042-54046061 | MS.gene26021:CDS | 30.0% |
! | CGAATCTATAATCTCTAGAA+TGG | - | chr7.3:54045949-54045968 | None:intergenic | 30.0% |
! | TTTGTTATACCTTCTCTCTA+TGG | + | chr7.3:54047800-54047819 | MS.gene26021:intron | 30.0% |
!! | AAGTACTGGGATAAATTTGA+AGG | + | chr7.3:54047270-54047289 | MS.gene26021:CDS | 30.0% |
!! | TGCTATAGTTGATAGGAAAA+AGG | - | chr7.3:54047710-54047729 | None:intergenic | 30.0% |
AAAACCTAGCTTAGAAGTCA+TGG | + | chr7.3:54047372-54047391 | MS.gene26021:CDS | 35.0% | |
AATCCAAATCCAACAACTCA+TGG | + | chr7.3:54046774-54046793 | MS.gene26021:intron | 35.0% | |
AGTCTTACGATTAAGATCAG+TGG | - | chr7.3:54046709-54046728 | None:intergenic | 35.0% | |
ATTTCTACCCCAAAAAATGC+TGG | + | chr7.3:54047628-54047647 | MS.gene26021:intron | 35.0% | |
CATAACATTGTCATGTGTAG+GGG | - | chr7.3:54047833-54047852 | None:intergenic | 35.0% | |
CATACTAAATCACAAGGATG+AGG | + | chr7.3:54046397-54046416 | MS.gene26021:CDS | 35.0% | |
CATGAATTACTATGTAGCAC+AGG | + | chr7.3:54047231-54047250 | MS.gene26021:intron | 35.0% | |
CTATGCAAAATGACCAAAAG+AGG | + | chr7.3:54046102-54046121 | MS.gene26021:CDS | 35.0% | |
CTTAGTTTATCTGCAAGTGT+GGG | - | chr7.3:54047403-54047422 | None:intergenic | 35.0% | |
CTTCATCTTGCAAGTCAAAT+CGG | + | chr7.3:54046194-54046213 | MS.gene26021:CDS | 35.0% | |
GGTAGAAATTGTAGAATTGG+AGG | - | chr7.3:54047617-54047636 | None:intergenic | 35.0% | |
GTTAGGAGAAATATCGAAAG+AGG | + | chr7.3:54046353-54046372 | MS.gene26021:CDS | 35.0% | |
TAAACTAGTCCATGAGTTGT+TGG | - | chr7.3:54046786-54046805 | None:intergenic | 35.0% | |
TAGCGCATAAATGTGCAAAA+TGG | - | chr7.3:54046432-54046451 | None:intergenic | 35.0% | |
TCTTAGTTTATCTGCAAGTG+TGG | - | chr7.3:54047404-54047423 | None:intergenic | 35.0% | |
TGGATTCAAACTACCTATCA+TGG | - | chr7.3:54047151-54047170 | None:intergenic | 35.0% | |
TGGGGTAGAAATTGTAGAAT+TGG | - | chr7.3:54047620-54047639 | None:intergenic | 35.0% | |
TTCTCCTAACAAAGCAAACA+AGG | - | chr7.3:54046343-54046362 | None:intergenic | 35.0% | |
TTTACCTTCCAAGCAAATGA+AGG | - | chr7.3:54046053-54046072 | None:intergenic | 35.0% | |
TTTCTACCCCAAAAAATGCT+GGG | + | chr7.3:54047629-54047648 | MS.gene26021:intron | 35.0% | |
! | ATCTCCTTGTTTGCTTTGTT+AGG | + | chr7.3:54046336-54046355 | MS.gene26021:CDS | 35.0% |
! | ATTTTGCATAGCGAGATGAA+TGG | - | chr7.3:54046093-54046112 | None:intergenic | 35.0% |
! | TATACTCTTGTTCTCTAGAG+TGG | - | chr7.3:54047335-54047354 | None:intergenic | 35.0% |
! | TTCGATTGTTGGTAAGTACT+GGG | + | chr7.3:54047257-54047276 | MS.gene26021:CDS | 35.0% |
! | TTTCTTACGAGTTGAAGAAG+TGG | + | chr7.3:54046495-54046514 | MS.gene26021:intron | 35.0% |
! | TTTTGCATAGCGAGATGAAT+GGG | - | chr7.3:54046092-54046111 | None:intergenic | 35.0% |
!! | ATTTGACTTGCAAGATGAAG+AGG | - | chr7.3:54046194-54046213 | None:intergenic | 35.0% |
!! | TGGACTAGTTTACTATCTAG+TGG | + | chr7.3:54046794-54046813 | MS.gene26021:intron | 35.0% |
AACCTGATAAACTCCACCAA+CGG | - | chr7.3:54047563-54047582 | None:intergenic | 40.0% | |
AATAGGAGAAACACCCATCA+AGG | + | chr7.3:54047983-54048002 | MS.gene26021:intron | 40.0% | |
AGATTTAGATTGCGCACAGT+TGG | + | chr7.3:54046591-54046610 | MS.gene26021:intron | 40.0% | |
AGTCCATGAGTTGTTGGATT+TGG | - | chr7.3:54046780-54046799 | None:intergenic | 40.0% | |
ATACTAATTCTGACCCCAAG+AGG | + | chr7.3:54047730-54047749 | MS.gene26021:intron | 40.0% | |
CAAAGGATAAACCAAACCAC+TGG | - | chr7.3:54047784-54047803 | None:intergenic | 40.0% | |
CAGTTGTGACCTCAATACAA+AGG | - | chr7.3:54047102-54047121 | None:intergenic | 40.0% | |
CCCAAAAAATGCTGGGAAAT+CGG | + | chr7.3:54047636-54047655 | MS.gene26021:intron | 40.0% | |
CCTCAATACAAAGGACTTAG+AGG | - | chr7.3:54047093-54047112 | None:intergenic | 40.0% | |
CCTCTAAGTCCTTTGTATTG+AGG | + | chr7.3:54047090-54047109 | MS.gene26021:intron | 40.0% | |
GAAACCTTCATTTGCTTGGA+AGG | + | chr7.3:54046046-54046065 | MS.gene26021:CDS | 40.0% | |
GCAAAATGACCAAAAGAGGA+TGG | + | chr7.3:54046106-54046125 | MS.gene26021:CDS | 40.0% | |
GCAAGAAAATGTGTGTGATG+CGG | + | chr7.3:54047035-54047054 | MS.gene26021:intron | 40.0% | |
GTCACATCTTGAATGGAATC+CGG | - | chr7.3:54046257-54046276 | None:intergenic | 40.0% | |
GTTATACCTTCTCTCTATGG+AGG | + | chr7.3:54047803-54047822 | MS.gene26021:intron | 40.0% | |
TACTAATTCTGACCCCAAGA+GGG | + | chr7.3:54047731-54047750 | MS.gene26021:intron | 40.0% | |
TCATAACCTCAATGGCAAAC+CGG | - | chr7.3:54046022-54046041 | None:intergenic | 40.0% | |
TCCATTCAAGATGTGACTGT+GGG | + | chr7.3:54046260-54046279 | MS.gene26021:CDS | 40.0% | |
TGAAACTGCACTGCATATTG+CGG | + | chr7.3:54046286-54046305 | MS.gene26021:CDS | 40.0% | |
TGTTGGATTTGGATTGCACA+CGG | - | chr7.3:54046769-54046788 | None:intergenic | 40.0% | |
TTCCATTCAAGATGTGACTG+TGG | + | chr7.3:54046259-54046278 | MS.gene26021:CDS | 40.0% | |
TTGTATTGAGGTCACAACTG+CGG | + | chr7.3:54047102-54047121 | MS.gene26021:intron | 40.0% | |
TTGTGATTGCAATGTCGTTG+CGG | + | chr7.3:54047064-54047083 | MS.gene26021:intron | 40.0% | |
TTTGCATAGCGAGATGAATG+GGG | - | chr7.3:54046091-54046110 | None:intergenic | 40.0% | |
! | AAAGACCTTGTTCGAGTTCA+AGG | + | chr7.3:54046152-54046171 | MS.gene26021:CDS | 40.0% |
! | AAGACCTTGTTCGAGTTCAA+GGG | + | chr7.3:54046153-54046172 | MS.gene26021:CDS | 40.0% |
! | CTTCGATTGTTGGTAAGTAC+TGG | + | chr7.3:54047256-54047275 | MS.gene26021:CDS | 40.0% |
!!! | ACCGATTTCCCAGCATTTTT+TGG | - | chr7.3:54047640-54047659 | None:intergenic | 40.0% |
!!! | CCGATTTCCCAGCATTTTTT+GGG | - | chr7.3:54047639-54047658 | None:intergenic | 40.0% |
!!! | CGATTTCCCAGCATTTTTTG+GGG | - | chr7.3:54047638-54047657 | None:intergenic | 40.0% |
ACCTGATAAACTCCACCAAC+GGG | - | chr7.3:54047562-54047581 | None:intergenic | 45.0% | |
AGAAACACCCATCAAGGTTG+TGG | + | chr7.3:54047989-54048008 | MS.gene26021:CDS | 45.0% | |
ATATGACAGGAGGTTACCTG+TGG | - | chr7.3:54046464-54046483 | None:intergenic | 45.0% | |
ATTCAAGATGTGACTGTGGG+GGG | + | chr7.3:54046263-54046282 | MS.gene26021:CDS | 45.0% | |
CATCAAGGTTGTGGGATAGA+CGG | + | chr7.3:54047998-54048017 | MS.gene26021:CDS | 45.0% | |
CATTCAAGATGTGACTGTGG+GGG | + | chr7.3:54046262-54046281 | MS.gene26021:CDS | 45.0% | |
CCATTCAAGATGTGACTGTG+GGG | + | chr7.3:54046261-54046280 | MS.gene26021:CDS | 45.0% | |
GAAACACCCATCAAGGTTGT+GGG | + | chr7.3:54047990-54048009 | MS.gene26021:CDS | 45.0% | |
GATAAACCAAACCACTGGAC+CGG | - | chr7.3:54047779-54047798 | None:intergenic | 45.0% | |
GCATCCATGACTTCTAAGCT+AGG | - | chr7.3:54047379-54047398 | None:intergenic | 45.0% | |
GGTTATCCTCCATAGAGAGA+AGG | - | chr7.3:54047812-54047831 | None:intergenic | 45.0% | |
GTCTATCCCACAACCTTGAT+GGG | - | chr7.3:54047999-54048018 | None:intergenic | 45.0% | |
TTTGCATATCGCCGCATCTA+GGG | + | chr7.3:54045989-54046008 | MS.gene26021:CDS | 45.0% | |
! | AGCGAGAAACCATCCTCTTT+TGG | - | chr7.3:54046118-54046137 | None:intergenic | 45.0% |
!! | ACTCTTGTTCTCTAGAGTGG+CGG | - | chr7.3:54047332-54047351 | None:intergenic | 45.0% |
!! | AGTCAGCGTTGATTGATAGG+TGG | - | chr7.3:54047539-54047558 | None:intergenic | 45.0% |
AATTCTGACCCCAAGAGGGA+GGG | + | chr7.3:54047735-54047754 | MS.gene26021:intron | 50.0% | |
ACTGAAAGCTGCAGCTGAAG+CGG | + | chr7.3:54045881-54045900 | MS.gene26021:CDS | 50.0% | |
AGTCAGCACGAGCAAGATTG+AGG | + | chr7.3:54046632-54046651 | MS.gene26021:intron | 50.0% | |
CCCCACAGTCACATCTTGAA+TGG | - | chr7.3:54046264-54046283 | None:intergenic | 50.0% | |
CGTCTATCCCACAACCTTGA+TGG | - | chr7.3:54048000-54048019 | None:intergenic | 50.0% | |
CTAGATGCGGCGATATGCAA+AGG | - | chr7.3:54045990-54046009 | None:intergenic | 50.0% | |
CTCTCCCTTGAACTCGAACA+AGG | - | chr7.3:54046160-54046179 | None:intergenic | 50.0% | |
CTTTGCATATCGCCGCATCT+AGG | + | chr7.3:54045988-54046007 | MS.gene26021:CDS | 50.0% | |
GCTTGGAAGGTAAATCCGCA+AGG | + | chr7.3:54046059-54046078 | MS.gene26021:CDS | 50.0% | |
TAATTCTGACCCCAAGAGGG+AGG | + | chr7.3:54047734-54047753 | MS.gene26021:intron | 50.0% | |
TGAATGGGGCTGAATCCTTG+CGG | - | chr7.3:54046077-54046096 | None:intergenic | 50.0% | |
TTGCATATCGCCGCATCTAG+GGG | + | chr7.3:54045990-54046009 | MS.gene26021:CDS | 50.0% | |
! | GTTCGAGTTCAAGGGAGAGA+AGG | + | chr7.3:54046161-54046180 | MS.gene26021:CDS | 50.0% |
! | TCCCGTTGGTGGAGTTTATC+AGG | + | chr7.3:54047558-54047577 | MS.gene26021:CDS | 50.0% |
!! | GGGAGTCAGCGTTGATTGAT+AGG | - | chr7.3:54047542-54047561 | None:intergenic | 50.0% |
AGCACAGGCGCTTCGATTGT+TGG | + | chr7.3:54047246-54047265 | MS.gene26021:intron | 55.0% | |
CGGAGAAGCAACGCAACACT+TGG | + | chr7.3:54047485-54047504 | MS.gene26021:CDS | 55.0% | |
CTGAAAGCTGCAGCTGAAGC+GGG | + | chr7.3:54045882-54045901 | MS.gene26021:CDS | 55.0% | |
TGAGGTCACAACTGCGGTTG+CGG | + | chr7.3:54047108-54047127 | MS.gene26021:intron | 55.0% | |
TGCATATCGCCGCATCTAGG+GGG | + | chr7.3:54045991-54046010 | MS.gene26021:CDS | 55.0% | |
TGCGCTAAGTAACGAGCCAC+AGG | + | chr7.3:54046445-54046464 | MS.gene26021:CDS | 55.0% | |
! | GCATCTCCGGTTTGCCATTG+AGG | + | chr7.3:54046013-54046032 | MS.gene26021:CDS | 55.0% |
!! | CAATCAACGCTGACTCCCGT+TGG | + | chr7.3:54047544-54047563 | MS.gene26021:CDS | 55.0% |
AGAGAGCCTACCCTCCCTCT+TGG | - | chr7.3:54047748-54047767 | None:intergenic | 60.0% | |
AGAGCCTACCCTCCCTCTTG+GGG | - | chr7.3:54047746-54047765 | None:intergenic | 60.0% | |
GAGAGCCTACCCTCCCTCTT+GGG | - | chr7.3:54047747-54047766 | None:intergenic | 60.0% | |
GAGGGTAGGCTCTCTAGTCG+TGG | + | chr7.3:54047753-54047772 | MS.gene26021:intron | 60.0% | |
GAGGTCACAACTGCGGTTGC+GGG | + | chr7.3:54047109-54047128 | MS.gene26021:intron | 60.0% | |
GTAGGCTCTCTAGTCGTGGC+CGG | + | chr7.3:54047757-54047776 | MS.gene26021:intron | 60.0% | |
!! | TCAACGCTGACTCCCGTTGG+TGG | + | chr7.3:54047547-54047566 | MS.gene26021:CDS | 60.0% |
CCGGAGATGCCCCCTAGATG+CGG | - | chr7.3:54046003-54046022 | None:intergenic | 65.0% | |
CTGACCCCAAGAGGGAGGGT+AGG | + | chr7.3:54047739-54047758 | MS.gene26021:intron | 65.0% | |
TCGTGGCCGGTCCAGTGGTT+TGG | + | chr7.3:54047770-54047789 | MS.gene26021:intron | 65.0% | |
TCTAGTCGTGGCCGGTCCAG+TGG | + | chr7.3:54047765-54047784 | MS.gene26021:intron | 65.0% | |
!! | CCGCATCTAGGGGGCATCTC+CGG | + | chr7.3:54046000-54046019 | MS.gene26021:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 54045858 | 54048032 | 54045858 | ID=MS.gene26021 |
chr7.3 | mRNA | 54045858 | 54048032 | 54045858 | ID=MS.gene26021.t1;Parent=MS.gene26021 |
chr7.3 | exon | 54045858 | 54046466 | 54045858 | ID=MS.gene26021.t1.exon1;Parent=MS.gene26021.t1 |
chr7.3 | CDS | 54045858 | 54046466 | 54045858 | ID=cds.MS.gene26021.t1;Parent=MS.gene26021.t1 |
chr7.3 | exon | 54047253 | 54047579 | 54047253 | ID=MS.gene26021.t1.exon2;Parent=MS.gene26021.t1 |
chr7.3 | CDS | 54047253 | 54047579 | 54047253 | ID=cds.MS.gene26021.t1;Parent=MS.gene26021.t1 |
chr7.3 | exon | 54047988 | 54048032 | 54047988 | ID=MS.gene26021.t1.exon3;Parent=MS.gene26021.t1 |
chr7.3 | CDS | 54047988 | 54048032 | 54047988 | ID=cds.MS.gene26021.t1;Parent=MS.gene26021.t1 |
Gene Sequence |
Protein sequence |