AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26021


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26021.t1 MTR_7g451420 95.513 312 14 0 1 312 1 312 0.0 612
MS.gene26021.t1 MTR_8g073260 66.230 305 103 0 8 312 10 314 1.10e-144 416
MS.gene26021.t1 MTR_3g016210 63.354 322 107 1 2 312 3 324 1.11e-142 410
MS.gene26021.t1 MTR_8g072510 65.595 311 107 0 2 312 3 313 1.68e-142 410
MS.gene26021.t1 MTR_8g039620 66.881 311 100 1 5 312 10 320 4.13e-142 409
MS.gene26021.t1 MTR_1g059930 66.667 306 102 0 6 311 9 314 1.60e-141 407
MS.gene26021.t1 MTR_8g467780 64.762 315 101 2 8 312 10 324 7.01e-141 406
MS.gene26021.t1 MTR_8g066670 66.773 313 102 2 1 312 1067 1378 3.35e-135 418
MS.gene26021.t1 MTR_7g021090 64.103 312 106 2 1 312 1 306 5.24e-133 385
MS.gene26021.t1 MTR_8g069880 64.516 310 108 2 4 312 2 310 2.26e-128 375
MS.gene26021.t1 MTR_8g068990 61.736 311 100 4 6 312 9 304 4.29e-125 366
MS.gene26021.t1 MTR_8g062410 63.462 312 106 2 2 312 3 307 6.57e-125 365
MS.gene26021.t1 MTR_8g040930 65.530 264 88 1 52 312 2 265 2.48e-117 343
MS.gene26021.t1 MTR_8g041240 65.530 264 88 1 52 312 2 265 2.48e-117 343
MS.gene26021.t1 MTR_3g105650 50.968 310 144 2 7 309 3 311 2.72e-102 307
MS.gene26021.t1 MTR_8g073275 47.840 324 96 5 52 312 2 315 2.49e-87 270
MS.gene26021.t1 MTR_7g117620 26.586 331 202 8 9 314 85 399 2.01e-20 92.0
MS.gene26021.t1 MTR_1g069110 25.705 319 202 9 5 313 14 307 1.71e-18 86.3
MS.gene26021.t1 MTR_1g115575 26.606 327 198 9 9 309 135 445 3.74e-18 85.5
MS.gene26021.t1 MTR_7g099580 24.127 315 184 7 6 313 9 275 1.15e-17 82.8
MS.gene26021.t1 MTR_4g062100 25.538 325 203 7 9 308 74 384 3.11e-17 82.8
MS.gene26021.t1 MTR_4g062100 26.415 159 115 1 4 162 138 294 5.47e-11 63.9
MS.gene26021.t1 MTR_7g099570 27.236 246 165 3 1 241 1 237 4.11e-16 79.3
MS.gene26021.t1 MTR_2g096190 24.923 325 205 8 9 308 70 380 6.59e-16 78.6
MS.gene26021.t1 MTR_2g096190 24.590 183 127 2 5 187 101 272 5.46e-11 63.9
MS.gene26021.t1 MTR_2g101320 27.189 217 140 4 40 248 137 343 1.76e-15 77.4
MS.gene26021.t1 MTR_8g105260 26.316 190 127 2 44 232 101 278 6.44e-13 69.7
MS.gene26021.t1 MTR_7g100390 24.845 322 202 8 12 308 56 362 1.32e-12 68.6
MS.gene26021.t1 MTR_7g100390 29.730 148 100 3 4 150 117 261 2.16e-12 68.2
MS.gene26021.t1 MTR_2g101310 27.895 190 126 3 40 228 137 316 5.74e-12 67.0
MS.gene26021.t1 MTR_2g101310 27.895 190 126 3 40 228 137 316 1.22e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26021.t1 AT4G10720 42.405 316 170 3 8 313 4 317 5.47e-78 244
MS.gene26021.t1 AT4G10720 42.405 316 170 3 8 313 4 317 1.15e-77 244
MS.gene26021.t1 AT1G14500 38.994 318 181 3 8 314 4 319 1.78e-68 220
MS.gene26021.t1 AT5G54620 40.523 306 175 2 8 306 4 309 9.75e-68 218
MS.gene26021.t1 AT5G15500 39.677 310 179 3 9 310 6 315 1.99e-67 218
MS.gene26021.t1 AT1G14480 38.050 318 187 2 8 315 4 321 3.08e-65 212
MS.gene26021.t1 AT5G54610 37.171 304 178 5 8 302 4 303 6.09e-58 192
MS.gene26021.t1 AT1G14480 37.013 308 161 5 8 315 4 278 8.63e-53 179
MS.gene26021.t1 AT5G15500 35.407 209 127 3 110 310 1 209 4.94e-31 120
MS.gene26021.t1 AT5G51160 29.104 268 158 5 69 313 41 299 4.67e-29 116
MS.gene26021.t1 AT2G01680 28.708 209 129 3 44 244 97 293 2.88e-18 85.9
MS.gene26021.t1 AT4G03500 25.723 311 175 10 9 316 251 508 4.00e-18 85.5
MS.gene26021.t1 AT4G03500 25.723 311 175 10 9 316 228 485 4.55e-18 85.5
MS.gene26021.t1 AT4G03500 25.723 311 175 10 9 316 228 485 4.55e-18 85.5
MS.gene26021.t1 AT3G12360 25.926 324 204 7 9 309 133 443 1.55e-16 80.9
MS.gene26021.t1 AT3G12360 25.926 324 204 7 9 309 121 431 1.93e-16 80.5
MS.gene26021.t1 AT1G07710 29.437 231 147 4 9 237 70 286 2.95e-16 79.7
MS.gene26021.t1 AT1G07710 29.437 231 147 4 9 237 70 286 2.95e-16 79.7
MS.gene26021.t1 AT1G05640 25.970 335 196 12 9 313 157 469 3.85e-16 79.7
MS.gene26021.t1 AT2G31820 25.220 341 210 11 1 313 182 505 7.08e-16 79.0
MS.gene26021.t1 AT4G03460 25.828 302 168 9 11 309 238 486 4.97e-15 76.3
MS.gene26021.t1 AT4G03460 25.828 302 168 9 11 309 206 454 5.10e-15 76.3
MS.gene26021.t1 AT5G54710 24.259 371 210 12 1 313 140 497 7.13e-15 75.9
MS.gene26021.t1 AT5G54710 23.720 371 212 11 1 313 95 452 7.44e-15 75.9
MS.gene26021.t1 AT1G34050 25.573 262 171 6 65 313 174 424 1.00e-14 75.1
MS.gene26021.t1 AT3G09550 25.000 324 207 6 9 309 154 464 1.91e-14 74.3
MS.gene26021.t1 AT3G09550 25.000 324 207 6 9 309 147 457 2.08e-14 74.3
MS.gene26021.t1 AT3G09550 25.000 324 207 6 9 309 147 457 2.08e-14 74.3
MS.gene26021.t1 AT1G10340 23.441 401 199 12 9 313 41 429 1.24e-13 72.0
MS.gene26021.t1 AT1G03670 27.966 236 141 8 88 316 266 479 1.70e-13 71.6
MS.gene26021.t1 AT5G02620 26.577 222 149 3 9 229 60 268 2.32e-13 71.2
MS.gene26021.t1 AT5G02620 26.577 222 149 3 9 229 60 268 2.32e-13 71.2
MS.gene26021.t1 AT5G02620 26.577 222 149 3 9 229 60 268 2.32e-13 71.2
MS.gene26021.t1 AT1G10340 23.210 405 199 12 9 313 41 433 5.03e-13 70.1
MS.gene26021.t1 AT4G03490 26.984 315 157 13 9 308 211 467 3.35e-12 67.8
MS.gene26021.t1 AT4G03490 26.984 315 157 13 9 308 201 457 3.88e-12 67.4
MS.gene26021.t1 AT4G03490 26.984 315 157 13 9 308 211 467 4.04e-12 67.4
MS.gene26021.t1 AT5G54700 25.893 224 124 6 101 318 23 210 6.60e-12 66.2
MS.gene26021.t1 AT4G03480 23.585 318 208 9 9 309 316 615 1.52e-11 65.9
MS.gene26021.t1 AT4G03480 23.585 318 208 9 9 309 319 618 1.58e-11 65.5
MS.gene26021.t1 AT5G02620 25.381 197 134 2 9 205 60 243 2.63e-11 64.7
MS.gene26021.t1 AT5G02620 25.381 197 134 2 9 205 60 243 2.63e-11 64.7
MS.gene26021.t1 AT4G03450 26.009 223 133 8 108 318 290 492 6.17e-11 63.9
MS.gene26021.t1 AT4G03450 26.009 223 133 8 108 318 290 492 6.37e-11 63.9

Find 71 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTTGAAGGCAAAGAATT+TGG 0.216334 7.3:+54047282 MS.gene26021:CDS
AAGATCAAAGACCACTATTA+TGG 0.294629 7.3:+54047420 MS.gene26021:CDS
TCCCGTTGGTGGAGTTTATC+AGG 0.296151 7.3:+54047558 MS.gene26021:CDS
ATCTCCTTGTTTGCTTTGTT+AGG 0.311633 7.3:+54046336 MS.gene26021:CDS
CTTCGATTGTTGGTAAGTAC+TGG 0.324415 7.3:+54047256 MS.gene26021:CDS
AGCTTTCAGTTTATCAAGAT+TGG 0.345596 7.3:-54045868 None:intergenic
AGCGAGAAACCATCCTCTTT+TGG 0.350553 7.3:-54046115 None:intergenic
CAATTTGAATTACTGCATAA+AGG 0.361525 7.3:-54045917 None:intergenic
TAGCGCATAAATGTGCAAAA+TGG 0.374999 7.3:-54046429 None:intergenic
AAAGACCTTGTTCGAGTTCA+AGG 0.377835 7.3:+54046152 MS.gene26021:CDS
CTTTGCATATCGCCGCATCT+AGG 0.387295 7.3:+54045988 MS.gene26021:CDS
GGGAGTCAGCGTTGATTGAT+AGG 0.399734 7.3:-54047539 None:intergenic
CGTCTATCCCACAACCTTGA+TGG 0.399974 7.3:-54047997 None:intergenic
ATTTGAAACCTTCATTTGCT+TGG 0.424279 7.3:+54046042 MS.gene26021:CDS
AGCACAGGCGCTTCGATTGT+TGG 0.424869 7.3:+54047246 MS.gene26021:intron
TCGCATTGAAAGAAATATAT+CGG 0.432489 7.3:+54047465 MS.gene26021:CDS
TTTGCATATCGCCGCATCTA+GGG 0.439653 7.3:+54045989 MS.gene26021:CDS
GCATCTCCGGTTTGCCATTG+AGG 0.441755 7.3:+54046013 MS.gene26021:CDS
CGAATCTATAATCTCTAGAA+TGG 0.451551 7.3:-54045946 None:intergenic
TTTCAAATTCATAACCTCAA+TGG 0.456133 7.3:-54046027 None:intergenic
CTTCATCTTGCAAGTCAAAT+CGG 0.456236 7.3:+54046194 MS.gene26021:CDS
ACCTGATAAACTCCACCAAC+GGG 0.462309 7.3:-54047559 None:intergenic
GAAACCTTCATTTGCTTGGA+AGG 0.463467 7.3:+54046046 MS.gene26021:CDS
CCCCACAGTCACATCTTGAA+TGG 0.468981 7.3:-54046261 None:intergenic
GTCTATCCCACAACCTTGAT+GGG 0.474858 7.3:-54047996 None:intergenic
TTTACCTTCCAAGCAAATGA+AGG 0.484047 7.3:-54046050 None:intergenic
CTGAAAGCTGCAGCTGAAGC+GGG 0.490793 7.3:+54045882 MS.gene26021:CDS
TCATAACCTCAATGGCAAAC+CGG 0.496377 7.3:-54046019 None:intergenic
AGAAACACCCATCAAGGTTG+TGG 0.498193 7.3:+54047989 MS.gene26021:CDS
AAGAGTATATTATTTAGTGC+TGG 0.498908 7.3:+54047346 MS.gene26021:CDS
GTTAGGAGAAATATCGAAAG+AGG 0.499854 7.3:+54046353 MS.gene26021:CDS
AAAACCTAGCTTAGAAGTCA+TGG 0.503544 7.3:+54047372 MS.gene26021:CDS
CTATGCAAAATGACCAAAAG+AGG 0.517456 7.3:+54046102 MS.gene26021:CDS
GTCACATCTTGAATGGAATC+CGG 0.521024 7.3:-54046254 None:intergenic
TTGCATATCGCCGCATCTAG+GGG 0.527689 7.3:+54045990 MS.gene26021:CDS
TCAACGCTGACTCCCGTTGG+TGG 0.529986 7.3:+54047547 MS.gene26021:CDS
AAGTACTGGGATAAATTTGA+AGG 0.534665 7.3:+54047270 MS.gene26021:CDS
CGGAGAAGCAACGCAACACT+TGG 0.536689 7.3:+54047485 MS.gene26021:CDS
TCCATTCAAGATGTGACTGT+GGG 0.544369 7.3:+54046260 MS.gene26021:CDS
TCTTAGTTTATCTGCAAGTG+TGG 0.544657 7.3:-54047401 None:intergenic
TTCGATTGTTGGTAAGTACT+GGG 0.548072 7.3:+54047257 MS.gene26021:CDS
TTCTCCTAACAAAGCAAACA+AGG 0.552244 7.3:-54046340 None:intergenic
ACTGAAAGCTGCAGCTGAAG+CGG 0.553330 7.3:+54045881 MS.gene26021:CDS
ATTTGACTTGCAAGATGAAG+AGG 0.554003 7.3:-54046191 None:intergenic
AAGACCTTGTTCGAGTTCAA+GGG 0.554891 7.3:+54046153 MS.gene26021:CDS
AATAGGAGAAACACCCATCA+AGG 0.555815 7.3:+54047983 MS.gene26021:intron
GTTCGAGTTCAAGGGAGAGA+AGG 0.562197 7.3:+54046161 MS.gene26021:CDS
TGCGCTAAGTAACGAGCCAC+AGG 0.563366 7.3:+54046445 MS.gene26021:CDS
GAAACACCCATCAAGGTTGT+GGG 0.564419 7.3:+54047990 MS.gene26021:CDS
TATACTCTTGTTCTCTAGAG+TGG 0.567180 7.3:-54047332 None:intergenic
CTCTCCCTTGAACTCGAACA+AGG 0.580165 7.3:-54046157 None:intergenic
GCATCCATGACTTCTAAGCT+AGG 0.580948 7.3:-54047376 None:intergenic
CTTAGTTTATCTGCAAGTGT+GGG 0.592849 7.3:-54047400 None:intergenic
GCAAAATGACCAAAAGAGGA+TGG 0.601826 7.3:+54046106 MS.gene26021:CDS
CTAGATGCGGCGATATGCAA+AGG 0.606329 7.3:-54045987 None:intergenic
CATCAAGGTTGTGGGATAGA+CGG 0.611317 7.3:+54047998 MS.gene26021:CDS
CAATCAACGCTGACTCCCGT+TGG 0.612251 7.3:+54047544 MS.gene26021:CDS
AACCTGATAAACTCCACCAA+CGG 0.614968 7.3:-54047560 None:intergenic
CATACTAAATCACAAGGATG+AGG 0.615450 7.3:+54046397 MS.gene26021:CDS
TTCCATTCAAGATGTGACTG+TGG 0.644137 7.3:+54046259 MS.gene26021:CDS
GCTTGGAAGGTAAATCCGCA+AGG 0.645305 7.3:+54046059 MS.gene26021:CDS
CCATTCAAGATGTGACTGTG+GGG 0.654082 7.3:+54046261 MS.gene26021:CDS
TGCATATCGCCGCATCTAGG+GGG 0.655530 7.3:+54045991 MS.gene26021:CDS
CATTCAAGATGTGACTGTGG+GGG 0.655813 7.3:+54046262 MS.gene26021:CDS
ACTCTTGTTCTCTAGAGTGG+CGG 0.656146 7.3:-54047329 None:intergenic
AGTCAGCGTTGATTGATAGG+TGG 0.659373 7.3:-54047536 None:intergenic
TTTGCATAGCGAGATGAATG+GGG 0.662734 7.3:-54046088 None:intergenic
TGAATGGGGCTGAATCCTTG+CGG 0.670822 7.3:-54046074 None:intergenic
ATATAACATACTAAATCACA+AGG 0.679043 7.3:+54046391 MS.gene26021:CDS
TGAAACTGCACTGCATATTG+CGG 0.683454 7.3:+54046286 MS.gene26021:CDS
ATTCAAGATGTGACTGTGGG+GGG 0.686049 7.3:+54046263 MS.gene26021:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAATATTGAAATCT+CGG - chr7.3:54046660-54046679 None:intergenic 10.0%
!! AACGAAGAAATAATATAAAA+GGG - chr7.3:54046835-54046854 None:intergenic 15.0%
!! CACATATATTATGTATATAA+AGG + chr7.3:54046962-54046981 MS.gene26021:intron 15.0%
!! TGAAATTCTATTCATTTATA+CGG - chr7.3:54046745-54046764 None:intergenic 15.0%
!!! GTTATTTATTTTTTATTGAC+AGG - chr7.3:54046860-54046879 None:intergenic 15.0%
!! AAAACTTCTAAATATATGAC+AGG - chr7.3:54046477-54046496 None:intergenic 20.0%
!! ATATAACATACTAAATCACA+AGG + chr7.3:54046391-54046410 MS.gene26021:CDS 20.0%
!! CAACGAAGAAATAATATAAA+AGG - chr7.3:54046836-54046855 None:intergenic 20.0%
!! TTCATCTCTTAAGTTATATA+AGG + chr7.3:54046543-54046562 MS.gene26021:intron 20.0%
! AAATTTGAAGGCAAAGAATT+TGG + chr7.3:54047282-54047301 MS.gene26021:CDS 25.0%
! AGATAAAACATTGTTGCAAT+AGG + chr7.3:54047966-54047985 MS.gene26021:intron 25.0%
! ATCATGGTTTAATTAGATTG+CGG - chr7.3:54047135-54047154 None:intergenic 25.0%
! CAATCTAATTAAACCATGAT+AGG + chr7.3:54047135-54047154 MS.gene26021:intron 25.0%
! CAATTTGAATTACTGCATAA+AGG - chr7.3:54045920-54045939 None:intergenic 25.0%
! GGTGAAAAATAAAAACTTTG+AGG + chr7.3:54046307-54046326 MS.gene26021:CDS 25.0%
! TCGCATTGAAAGAAATATAT+CGG + chr7.3:54047465-54047484 MS.gene26021:CDS 25.0%
! TTAGTATTGCTATAGTTGAT+AGG - chr7.3:54047717-54047736 None:intergenic 25.0%
! TTTCAAATTCATAACCTCAA+TGG - chr7.3:54046030-54046049 None:intergenic 25.0%
!! AAGAGTATATTATTTAGTGC+TGG + chr7.3:54047346-54047365 MS.gene26021:CDS 25.0%
!! CAACATTTTATCCATAATAG+TGG - chr7.3:54047434-54047453 None:intergenic 25.0%
!! CACATTTTCTTGCAATATAA+AGG - chr7.3:54047028-54047047 None:intergenic 25.0%
!! TAAATCTTGAGTTGTCAATT+CGG - chr7.3:54046578-54046597 None:intergenic 25.0%
!! TTGCAACAATGTTTTATCTA+TGG - chr7.3:54047965-54047984 None:intergenic 25.0%
!! TTTAGTGTACTACAGATTTT+TGG + chr7.3:54047909-54047928 MS.gene26021:intron 25.0%
!!! TAAATTACTTTTTGCTTGTC+CGG + chr7.3:54046235-54046254 MS.gene26021:CDS 25.0%
!!! TTTTTAGTATTGTTGCAACA+GGG + chr7.3:54047872-54047891 MS.gene26021:intron 25.0%
!!! TTTTTTAGTATTGTTGCAAC+AGG + chr7.3:54047871-54047890 MS.gene26021:intron 25.0%
AAGATCAAAGACCACTATTA+TGG + chr7.3:54047420-54047439 MS.gene26021:CDS 30.0%
AATATTCACAAGTAGTGAAC+TGG - chr7.3:54047171-54047190 None:intergenic 30.0%
ACTTCTAAATATATGACAGG+AGG - chr7.3:54046474-54046493 None:intergenic 30.0%
AGCTTTCAGTTTATCAAGAT+TGG - chr7.3:54045871-54045890 None:intergenic 30.0%
ATCATAACATTGTCATGTGT+AGG - chr7.3:54047835-54047854 None:intergenic 30.0%
TCATAACATTGTCATGTGTA+GGG - chr7.3:54047834-54047853 None:intergenic 30.0%
! ATAGAGAGAAGGTATAACAA+AGG - chr7.3:54047801-54047820 None:intergenic 30.0%
! ATTTGAAACCTTCATTTGCT+TGG + chr7.3:54046042-54046061 MS.gene26021:CDS 30.0%
! CGAATCTATAATCTCTAGAA+TGG - chr7.3:54045949-54045968 None:intergenic 30.0%
! TTTGTTATACCTTCTCTCTA+TGG + chr7.3:54047800-54047819 MS.gene26021:intron 30.0%
!! AAGTACTGGGATAAATTTGA+AGG + chr7.3:54047270-54047289 MS.gene26021:CDS 30.0%
!! TGCTATAGTTGATAGGAAAA+AGG - chr7.3:54047710-54047729 None:intergenic 30.0%
AAAACCTAGCTTAGAAGTCA+TGG + chr7.3:54047372-54047391 MS.gene26021:CDS 35.0%
AATCCAAATCCAACAACTCA+TGG + chr7.3:54046774-54046793 MS.gene26021:intron 35.0%
AGTCTTACGATTAAGATCAG+TGG - chr7.3:54046709-54046728 None:intergenic 35.0%
ATTTCTACCCCAAAAAATGC+TGG + chr7.3:54047628-54047647 MS.gene26021:intron 35.0%
CATAACATTGTCATGTGTAG+GGG - chr7.3:54047833-54047852 None:intergenic 35.0%
CATACTAAATCACAAGGATG+AGG + chr7.3:54046397-54046416 MS.gene26021:CDS 35.0%
CATGAATTACTATGTAGCAC+AGG + chr7.3:54047231-54047250 MS.gene26021:intron 35.0%
CTATGCAAAATGACCAAAAG+AGG + chr7.3:54046102-54046121 MS.gene26021:CDS 35.0%
CTTAGTTTATCTGCAAGTGT+GGG - chr7.3:54047403-54047422 None:intergenic 35.0%
CTTCATCTTGCAAGTCAAAT+CGG + chr7.3:54046194-54046213 MS.gene26021:CDS 35.0%
GGTAGAAATTGTAGAATTGG+AGG - chr7.3:54047617-54047636 None:intergenic 35.0%
GTTAGGAGAAATATCGAAAG+AGG + chr7.3:54046353-54046372 MS.gene26021:CDS 35.0%
TAAACTAGTCCATGAGTTGT+TGG - chr7.3:54046786-54046805 None:intergenic 35.0%
TAGCGCATAAATGTGCAAAA+TGG - chr7.3:54046432-54046451 None:intergenic 35.0%
TCTTAGTTTATCTGCAAGTG+TGG - chr7.3:54047404-54047423 None:intergenic 35.0%
TGGATTCAAACTACCTATCA+TGG - chr7.3:54047151-54047170 None:intergenic 35.0%
TGGGGTAGAAATTGTAGAAT+TGG - chr7.3:54047620-54047639 None:intergenic 35.0%
TTCTCCTAACAAAGCAAACA+AGG - chr7.3:54046343-54046362 None:intergenic 35.0%
TTTACCTTCCAAGCAAATGA+AGG - chr7.3:54046053-54046072 None:intergenic 35.0%
TTTCTACCCCAAAAAATGCT+GGG + chr7.3:54047629-54047648 MS.gene26021:intron 35.0%
! ATCTCCTTGTTTGCTTTGTT+AGG + chr7.3:54046336-54046355 MS.gene26021:CDS 35.0%
! ATTTTGCATAGCGAGATGAA+TGG - chr7.3:54046093-54046112 None:intergenic 35.0%
! TATACTCTTGTTCTCTAGAG+TGG - chr7.3:54047335-54047354 None:intergenic 35.0%
! TTCGATTGTTGGTAAGTACT+GGG + chr7.3:54047257-54047276 MS.gene26021:CDS 35.0%
! TTTCTTACGAGTTGAAGAAG+TGG + chr7.3:54046495-54046514 MS.gene26021:intron 35.0%
! TTTTGCATAGCGAGATGAAT+GGG - chr7.3:54046092-54046111 None:intergenic 35.0%
!! ATTTGACTTGCAAGATGAAG+AGG - chr7.3:54046194-54046213 None:intergenic 35.0%
!! TGGACTAGTTTACTATCTAG+TGG + chr7.3:54046794-54046813 MS.gene26021:intron 35.0%
AACCTGATAAACTCCACCAA+CGG - chr7.3:54047563-54047582 None:intergenic 40.0%
AATAGGAGAAACACCCATCA+AGG + chr7.3:54047983-54048002 MS.gene26021:intron 40.0%
AGATTTAGATTGCGCACAGT+TGG + chr7.3:54046591-54046610 MS.gene26021:intron 40.0%
AGTCCATGAGTTGTTGGATT+TGG - chr7.3:54046780-54046799 None:intergenic 40.0%
ATACTAATTCTGACCCCAAG+AGG + chr7.3:54047730-54047749 MS.gene26021:intron 40.0%
CAAAGGATAAACCAAACCAC+TGG - chr7.3:54047784-54047803 None:intergenic 40.0%
CAGTTGTGACCTCAATACAA+AGG - chr7.3:54047102-54047121 None:intergenic 40.0%
CCCAAAAAATGCTGGGAAAT+CGG + chr7.3:54047636-54047655 MS.gene26021:intron 40.0%
CCTCAATACAAAGGACTTAG+AGG - chr7.3:54047093-54047112 None:intergenic 40.0%
CCTCTAAGTCCTTTGTATTG+AGG + chr7.3:54047090-54047109 MS.gene26021:intron 40.0%
GAAACCTTCATTTGCTTGGA+AGG + chr7.3:54046046-54046065 MS.gene26021:CDS 40.0%
GCAAAATGACCAAAAGAGGA+TGG + chr7.3:54046106-54046125 MS.gene26021:CDS 40.0%
GCAAGAAAATGTGTGTGATG+CGG + chr7.3:54047035-54047054 MS.gene26021:intron 40.0%
GTCACATCTTGAATGGAATC+CGG - chr7.3:54046257-54046276 None:intergenic 40.0%
GTTATACCTTCTCTCTATGG+AGG + chr7.3:54047803-54047822 MS.gene26021:intron 40.0%
TACTAATTCTGACCCCAAGA+GGG + chr7.3:54047731-54047750 MS.gene26021:intron 40.0%
TCATAACCTCAATGGCAAAC+CGG - chr7.3:54046022-54046041 None:intergenic 40.0%
TCCATTCAAGATGTGACTGT+GGG + chr7.3:54046260-54046279 MS.gene26021:CDS 40.0%
TGAAACTGCACTGCATATTG+CGG + chr7.3:54046286-54046305 MS.gene26021:CDS 40.0%
TGTTGGATTTGGATTGCACA+CGG - chr7.3:54046769-54046788 None:intergenic 40.0%
TTCCATTCAAGATGTGACTG+TGG + chr7.3:54046259-54046278 MS.gene26021:CDS 40.0%
TTGTATTGAGGTCACAACTG+CGG + chr7.3:54047102-54047121 MS.gene26021:intron 40.0%
TTGTGATTGCAATGTCGTTG+CGG + chr7.3:54047064-54047083 MS.gene26021:intron 40.0%
TTTGCATAGCGAGATGAATG+GGG - chr7.3:54046091-54046110 None:intergenic 40.0%
! AAAGACCTTGTTCGAGTTCA+AGG + chr7.3:54046152-54046171 MS.gene26021:CDS 40.0%
! AAGACCTTGTTCGAGTTCAA+GGG + chr7.3:54046153-54046172 MS.gene26021:CDS 40.0%
! CTTCGATTGTTGGTAAGTAC+TGG + chr7.3:54047256-54047275 MS.gene26021:CDS 40.0%
!!! ACCGATTTCCCAGCATTTTT+TGG - chr7.3:54047640-54047659 None:intergenic 40.0%
!!! CCGATTTCCCAGCATTTTTT+GGG - chr7.3:54047639-54047658 None:intergenic 40.0%
!!! CGATTTCCCAGCATTTTTTG+GGG - chr7.3:54047638-54047657 None:intergenic 40.0%
ACCTGATAAACTCCACCAAC+GGG - chr7.3:54047562-54047581 None:intergenic 45.0%
AGAAACACCCATCAAGGTTG+TGG + chr7.3:54047989-54048008 MS.gene26021:CDS 45.0%
ATATGACAGGAGGTTACCTG+TGG - chr7.3:54046464-54046483 None:intergenic 45.0%
ATTCAAGATGTGACTGTGGG+GGG + chr7.3:54046263-54046282 MS.gene26021:CDS 45.0%
CATCAAGGTTGTGGGATAGA+CGG + chr7.3:54047998-54048017 MS.gene26021:CDS 45.0%
CATTCAAGATGTGACTGTGG+GGG + chr7.3:54046262-54046281 MS.gene26021:CDS 45.0%
CCATTCAAGATGTGACTGTG+GGG + chr7.3:54046261-54046280 MS.gene26021:CDS 45.0%
GAAACACCCATCAAGGTTGT+GGG + chr7.3:54047990-54048009 MS.gene26021:CDS 45.0%
GATAAACCAAACCACTGGAC+CGG - chr7.3:54047779-54047798 None:intergenic 45.0%
GCATCCATGACTTCTAAGCT+AGG - chr7.3:54047379-54047398 None:intergenic 45.0%
GGTTATCCTCCATAGAGAGA+AGG - chr7.3:54047812-54047831 None:intergenic 45.0%
GTCTATCCCACAACCTTGAT+GGG - chr7.3:54047999-54048018 None:intergenic 45.0%
TTTGCATATCGCCGCATCTA+GGG + chr7.3:54045989-54046008 MS.gene26021:CDS 45.0%
! AGCGAGAAACCATCCTCTTT+TGG - chr7.3:54046118-54046137 None:intergenic 45.0%
!! ACTCTTGTTCTCTAGAGTGG+CGG - chr7.3:54047332-54047351 None:intergenic 45.0%
!! AGTCAGCGTTGATTGATAGG+TGG - chr7.3:54047539-54047558 None:intergenic 45.0%
AATTCTGACCCCAAGAGGGA+GGG + chr7.3:54047735-54047754 MS.gene26021:intron 50.0%
ACTGAAAGCTGCAGCTGAAG+CGG + chr7.3:54045881-54045900 MS.gene26021:CDS 50.0%
AGTCAGCACGAGCAAGATTG+AGG + chr7.3:54046632-54046651 MS.gene26021:intron 50.0%
CCCCACAGTCACATCTTGAA+TGG - chr7.3:54046264-54046283 None:intergenic 50.0%
CGTCTATCCCACAACCTTGA+TGG - chr7.3:54048000-54048019 None:intergenic 50.0%
CTAGATGCGGCGATATGCAA+AGG - chr7.3:54045990-54046009 None:intergenic 50.0%
CTCTCCCTTGAACTCGAACA+AGG - chr7.3:54046160-54046179 None:intergenic 50.0%
CTTTGCATATCGCCGCATCT+AGG + chr7.3:54045988-54046007 MS.gene26021:CDS 50.0%
GCTTGGAAGGTAAATCCGCA+AGG + chr7.3:54046059-54046078 MS.gene26021:CDS 50.0%
TAATTCTGACCCCAAGAGGG+AGG + chr7.3:54047734-54047753 MS.gene26021:intron 50.0%
TGAATGGGGCTGAATCCTTG+CGG - chr7.3:54046077-54046096 None:intergenic 50.0%
TTGCATATCGCCGCATCTAG+GGG + chr7.3:54045990-54046009 MS.gene26021:CDS 50.0%
! GTTCGAGTTCAAGGGAGAGA+AGG + chr7.3:54046161-54046180 MS.gene26021:CDS 50.0%
! TCCCGTTGGTGGAGTTTATC+AGG + chr7.3:54047558-54047577 MS.gene26021:CDS 50.0%
!! GGGAGTCAGCGTTGATTGAT+AGG - chr7.3:54047542-54047561 None:intergenic 50.0%
AGCACAGGCGCTTCGATTGT+TGG + chr7.3:54047246-54047265 MS.gene26021:intron 55.0%
CGGAGAAGCAACGCAACACT+TGG + chr7.3:54047485-54047504 MS.gene26021:CDS 55.0%
CTGAAAGCTGCAGCTGAAGC+GGG + chr7.3:54045882-54045901 MS.gene26021:CDS 55.0%
TGAGGTCACAACTGCGGTTG+CGG + chr7.3:54047108-54047127 MS.gene26021:intron 55.0%
TGCATATCGCCGCATCTAGG+GGG + chr7.3:54045991-54046010 MS.gene26021:CDS 55.0%
TGCGCTAAGTAACGAGCCAC+AGG + chr7.3:54046445-54046464 MS.gene26021:CDS 55.0%
! GCATCTCCGGTTTGCCATTG+AGG + chr7.3:54046013-54046032 MS.gene26021:CDS 55.0%
!! CAATCAACGCTGACTCCCGT+TGG + chr7.3:54047544-54047563 MS.gene26021:CDS 55.0%
AGAGAGCCTACCCTCCCTCT+TGG - chr7.3:54047748-54047767 None:intergenic 60.0%
AGAGCCTACCCTCCCTCTTG+GGG - chr7.3:54047746-54047765 None:intergenic 60.0%
GAGAGCCTACCCTCCCTCTT+GGG - chr7.3:54047747-54047766 None:intergenic 60.0%
GAGGGTAGGCTCTCTAGTCG+TGG + chr7.3:54047753-54047772 MS.gene26021:intron 60.0%
GAGGTCACAACTGCGGTTGC+GGG + chr7.3:54047109-54047128 MS.gene26021:intron 60.0%
GTAGGCTCTCTAGTCGTGGC+CGG + chr7.3:54047757-54047776 MS.gene26021:intron 60.0%
!! TCAACGCTGACTCCCGTTGG+TGG + chr7.3:54047547-54047566 MS.gene26021:CDS 60.0%
CCGGAGATGCCCCCTAGATG+CGG - chr7.3:54046003-54046022 None:intergenic 65.0%
CTGACCCCAAGAGGGAGGGT+AGG + chr7.3:54047739-54047758 MS.gene26021:intron 65.0%
TCGTGGCCGGTCCAGTGGTT+TGG + chr7.3:54047770-54047789 MS.gene26021:intron 65.0%
TCTAGTCGTGGCCGGTCCAG+TGG + chr7.3:54047765-54047784 MS.gene26021:intron 65.0%
!! CCGCATCTAGGGGGCATCTC+CGG + chr7.3:54046000-54046019 MS.gene26021:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 54045858 54048032 54045858 ID=MS.gene26021
chr7.3 mRNA 54045858 54048032 54045858 ID=MS.gene26021.t1;Parent=MS.gene26021
chr7.3 exon 54045858 54046466 54045858 ID=MS.gene26021.t1.exon1;Parent=MS.gene26021.t1
chr7.3 CDS 54045858 54046466 54045858 ID=cds.MS.gene26021.t1;Parent=MS.gene26021.t1
chr7.3 exon 54047253 54047579 54047253 ID=MS.gene26021.t1.exon2;Parent=MS.gene26021.t1
chr7.3 CDS 54047253 54047579 54047253 ID=cds.MS.gene26021.t1;Parent=MS.gene26021.t1
chr7.3 exon 54047988 54048032 54047988 ID=MS.gene26021.t1.exon3;Parent=MS.gene26021.t1
chr7.3 CDS 54047988 54048032 54047988 ID=cds.MS.gene26021.t1;Parent=MS.gene26021.t1
Gene Sequence

>MS.gene26021

ATGAGCGCAACCAATCTTGATAAACTGAAAGCTGCAGCTGAAGCGGGTAATATAGACATCCTTTATGCAGTAATTCAAATTGATTCGTCCATTCTAGAGATTATAGATTCGAATCAGTTTGTTGAAACTCCTTTGCATATCGCCGCATCTAGGGGGCATCTCCGGTTTGCCATTGAGGTTATGAATTTGAAACCTTCATTTGCTTGGAAGGTAAATCCGCAAGGATTCAGCCCCATTCATCTCGCTATGCAAAATGACCAAAAGAGGATGGTTTCTCGCTTTGTTGACATTAATAAAGACCTTGTTCGAGTTCAAGGGAGAGAAGGCTTAACGCCTCTTCATCTTGCAAGTCAAATCGGTGAAGTTGAACTTTTAGCTAAATTACTTTTTGCTTGTCCGGATTCCATTCAAGATGTGACTGTGGGGGGTGAAACTGCACTGCATATTGCGGTGAAAAATAAAAACTTTGAGGCTCTTCATCTCCTTGTTTGCTTTGTTAGGAGAAATATCGAAAGAGGTGCTAGAGAGTTTGAATATAACATACTAAATCACAAGGATGAGGATGACAACACCATTTTGCACATTTATGCGCTAAGTAACGAGCCACAGGTAACCTCCTGTCATATATTTAGAAGTTTTTCTTACGAGTTGAAGAAGTGGAAATTATATTCAAGCATATTTAAACTTCATCTCTTAAGTTATATAAGGTCAAACTCACCGAATTGACAACTCAAGATTTAGATTGCGCACAGTTGGAAATCTATGCATTTATATAGTCAGCACGAGCAAGATTGAGGATCCGAGATTTCAATATTTAAAAAATAAAATCTGCATGTTTCTTGCAATGTCCACTGATCTTAATCGTAAGACTAGCAATGTGCTAACCGTATAAATGAATAGAATTTCATCCGTGTGCAATCCAAATCCAACAACTCATGGACTAGTTTACTATCTAGTGGTTGCTATCTCATGTTCCCTTTTATATTATTTCTTCGTTGTCCTGTCAATAAAAAATAAATAACACATCATAAAACATATCTCATCTTGTAAATATAACGTGTTTTTTAATTTGTCATTTTTATCGAGAAAACATGAAAGAAAAAACACATATATTATGTATATAAAGGACATAGCTTGCACAATTTTGAATTGTTGCTATGCTGAGAACCTTTATATTGCAAGAAAATGTGTGTGATGCGGTCAAAATTGTGATTGCAATGTCGTTGCGGAGACCTCTAAGTCCTTTGTATTGAGGTCACAACTGCGGTTGCGGGCCGCAATCTAATTAAACCATGATAGGTAGTTTGAATCCAGTTCACTACTTGTGAATATTTTAGTTGCTAATATGAATAATCTCTAACAATTGTATAGTTCATGAATTACTATGTAGCACAGGCGCTTCGATTGTTGGTAAGTACTGGGATAAATTTGAAGGCAAAGAATTTGGAGAACAAAACAGCATTAGACATAGCCGCCACTCTAGAGAACAAGAGTATATTATTTAGTGCTGGATCAAAACCTAGCTTAGAAGTCATGGATGCTCCCACACTTGCAGATAAACTAAGATCAAAGACCACTATTATGGATAAAATGTTGATTTATGTACGTCGCATTGAAAGAAATATATCGGAGAAGCAACGCAACACTTGGTTGATAATTGCGACTCTTGTTGCAACAGCCACCTATCAATCAACGCTGACTCCCGTTGGTGGAGTTTATCAGGTTAGTGCTAGTGACAATAATGTGAACAACACTTCCTCCAATTCTACAATTTCTACCCCAAAAAATGCTGGGAAATCGGTCTTGTCAAAAGTTGATTTCTTTTTGTTTTCATATATGAATATGATTTCCTTTTTCCTATCAACTATAGCAATACTAATTCTGACCCCAAGAGGGAGGGTAGGCTCTCTAGTCGTGGCCGGTCCAGTGGTTTGGTTTATCCTTTGTTATACCTTCTCTCTATGGAGGATAACCCCTACACATGACAATGTTATGATGTTTAATTTAATTTTCTTTTTTAGTATTGTTGCAACAGGGATTTGCTGCATTATTTTAGTGTACTACAGATTTTTGGCTTCTGCACAATAGTAACAAATTGAATAGACCATAGATAAAACATTGTTGCAATAGGAGAAACACCCATCAAGGTTGTGGGATAGACGGTACAATCGCTAA

Protein sequence

>MS.gene26021.t1

MSATNLDKLKAAAEAGNIDILYAVIQIDSSILEIIDSNQFVETPLHIAASRGHLRFAIEVMNLKPSFAWKVNPQGFSPIHLAMQNDQKRMVSRFVDINKDLVRVQGREGLTPLHLASQIGEVELLAKLLFACPDSIQDVTVGGETALHIAVKNKNFEALHLLVCFVRRNIERGAREFEYNILNHKDEDDNTILHIYALSNEPQALRLLVSTGINLKAKNLENKTALDIAATLENKSILFSAGSKPSLEVMDAPTLADKLRSKTTIMDKMLIYVRRIERNISEKQRNTWLIIATLVATATYQSTLTPVGGVYQEKHPSRLWDRRYNR