AlfalfaGEDB | MS.gene014931

M. sativa cultivar XinJiangDaYe / MS.gene014931

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13857.9 PF13962.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014931.t1	XP_003603259.1	96.7	427	14	0	1	427	1	427	2.90E-178	634.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014931.t1	Q8GYH5	47.4	378	188	6	1	370	1	375	8.3e-25	116.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014931.t1	G7J969	96.7	427	14	0	1	427	1	427	2.1e-178	634.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene23852	MS.gene014931	PPI
MS.gene014931	MS.gene71122	PPI
MS.gene97943	MS.gene014931	PPI
MS.gene014931	MS.gene51278	PPI
MS.gene97379	MS.gene014931	PPI
MS.gene67157	MS.gene014931	PPI
MS.gene050456	MS.gene014931	PPI
MS.gene012203	MS.gene014931	PPI
MS.gene014931	MS.gene23881	PPI
MS.gene022109	MS.gene014931	PPI
MS.gene34651	MS.gene014931	PPI
MS.gene25244	MS.gene014931	PPI
MS.gene08470	MS.gene014931	PPI
MS.gene014931	MS.gene062662	PPI
MS.gene014931	MS.gene21888	PPI
MS.gene025229	MS.gene014931	PPI
MS.gene063222	MS.gene014931	PPI
MS.gene25515	MS.gene014931	PPI
MS.gene014931	MS.gene30177	PPI
MS.gene26019	MS.gene014931	PPI
MS.gene062662	MS.gene014931	PPI
MS.gene69687	MS.gene014931	PPI
MS.gene035805	MS.gene014931	PPI
MS.gene066500	MS.gene014931	PPI
MS.gene51258	MS.gene014931	PPI
MS.gene23810	MS.gene014931	PPI
MS.gene014931	MS.gene09785	PPI
MS.gene82740	MS.gene014931	PPI
MS.gene014931	MS.gene81055	PPI
MS.gene014931	MS.gene65775	PPI
MS.gene024753	MS.gene014931	PPI
MS.gene014931	MS.gene80163	PPI
MS.gene78281	MS.gene014931	PPI
MS.gene70008	MS.gene014931	PPI
MS.gene014931	MS.gene027072	PPI
MS.gene014931	MS.gene65463	PPI
MS.gene014931	MS.gene007485	PPI
MS.gene69966	MS.gene014931	PPI
MS.gene24806	MS.gene014931	PPI
MS.gene071113	MS.gene014931	PPI
MS.gene004844	MS.gene014931	PPI
MS.gene014931	MS.gene87218	PPI
MS.gene027071	MS.gene014931	PPI
MS.gene30433	MS.gene014931	PPI
MS.gene007487	MS.gene014931	PPI
MS.gene018518	MS.gene014931	PPI
MS.gene90400	MS.gene014931	PPI
MS.gene010910	MS.gene014931	PPI
MS.gene066464	MS.gene014931	PPI
MS.gene014931	MS.gene99973	PPI
MS.gene07706	MS.gene014931	PPI
MS.gene027074	MS.gene014931	PPI
MS.gene014931	MS.gene008833	PPI
MS.gene050270	MS.gene014931	PPI
MS.gene010912	MS.gene014931	PPI
MS.gene050457	MS.gene014931	PPI
MS.gene25024	MS.gene014931	PPI
MS.gene23811	MS.gene014931	PPI
MS.gene014931	MS.gene48655	PPI
MS.gene51335	MS.gene014931	PPI
MS.gene065848	MS.gene014931	PPI
MS.gene005995	MS.gene014931	PPI
MS.gene027441	MS.gene014931	PPI
MS.gene037950	MS.gene014931	PPI
MS.gene068249	MS.gene014931	PPI
MS.gene066046	MS.gene014931	PPI
MS.gene051003	MS.gene014931	PPI
MS.gene64441	MS.gene014931	PPI
MS.gene014931	MS.gene037184	PPI
MS.gene30176	MS.gene014931	PPI
MS.gene27223	MS.gene014931	PPI
MS.gene014931	MS.gene23196	PPI
MS.gene038519	MS.gene014931	PPI
MS.gene050272	MS.gene014931	PPI
MS.gene014931	MS.gene067705	PPI
MS.gene014931	MS.gene038519	PPI
MS.gene22482	MS.gene014931	PPI
MS.gene039682	MS.gene014931	PPI
MS.gene014931	MS.gene30174	PPI
MS.gene061932	MS.gene014931	PPI
MS.gene014931	MS.gene26021	PPI
MS.gene51262	MS.gene014931	PPI
MS.gene85534	MS.gene014931	PPI
MS.gene24922	MS.gene014931	PPI
MS.gene027073	MS.gene014931	PPI
MS.gene064542	MS.gene014931	PPI
MS.gene066467	MS.gene014931	PPI
MS.gene47479	MS.gene014931	PPI
MS.gene21734	MS.gene014931	PPI
MS.gene33377	MS.gene014931	PPI
MS.gene014931	MS.gene053363	PPI
MS.gene008767	MS.gene014931	PPI
MS.gene34712	MS.gene014931	PPI
MS.gene71204	MS.gene014931	PPI
MS.gene014931	MS.gene32726	PPI
MS.gene39623	MS.gene014931	PPI
MS.gene26672	MS.gene014931	PPI
MS.gene36842	MS.gene014931	PPI
MS.gene014931	MS.gene60920	PPI
MS.gene014931	MS.gene73119	PPI
MS.gene014931	MS.gene92243	PPI
MS.gene99554	MS.gene014931	PPI
MS.gene058128	MS.gene014931	PPI
MS.gene99588	MS.gene014931	PPI
MS.gene027075	MS.gene014931	PPI
MS.gene41291	MS.gene014931	PPI
MS.gene014931	MS.gene34009	PPI
MS.gene066501	MS.gene014931	PPI
MS.gene63085	MS.gene014931	PPI
MS.gene056455	MS.gene014931	PPI
MS.gene014931	MS.gene54764	PPI
MS.gene89986	MS.gene014931	PPI
MS.gene052956	MS.gene014931	PPI
MS.gene91775	MS.gene014931	PPI
MS.gene043662	MS.gene014931	PPI
MS.gene69965	MS.gene014931	PPI
MS.gene043742	MS.gene014931	PPI
MS.gene26532	MS.gene014931	PPI
MS.gene042783	MS.gene014931	PPI
MS.gene014931	MS.gene32723	PPI
MS.gene014931	MS.gene02469	PPI
MS.gene30172	MS.gene014931	PPI
MS.gene007486	MS.gene014931	PPI
MS.gene045937	MS.gene014931	PPI
MS.gene041770	MS.gene014931	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014931.t1	MTR_3g105650	96.019	427	17	0	1	427	1	427	0.0	862
MS.gene014931.t1	MTR_8g073260	44.469	461	208	9	1	427	4	450	1.74e-120	358
MS.gene014931.t1	MTR_8g072510	44.802	404	188	5	5	382	10	404	2.82e-113	340
MS.gene014931.t1	MTR_3g016210	42.299	435	200	6	3	395	8	433	8.46e-110	330
MS.gene014931.t1	MTR_8g039620	44.665	403	188	6	2	376	11	406	4.70e-108	326
MS.gene014931.t1	MTR_1g059930	52.273	308	139	2	5	311	12	312	6.79e-105	318
MS.gene014931.t1	MTR_8g062410	44.963	407	182	7	3	382	8	399	1.07e-99	305
MS.gene014931.t1	MTR_8g467780	40.698	430	208	7	5	396	11	431	1.45e-99	305
MS.gene014931.t1	MTR_8g069880	41.646	413	201	7	3	386	5	406	7.93e-99	303
MS.gene014931.t1	MTR_7g451420	49.839	311	146	3	3	311	7	309	2.41e-98	297
MS.gene014931.t1	MTR_7g021090	42.677	396	184	8	3	369	7	388	1.48e-97	298
MS.gene014931.t1	MTR_8g068990	42.932	382	168	8	5	358	12	371	1.48e-90	281
MS.gene014931.t1	MTR_8g066670	40.000	405	208	4	5	383	1075	1470	2.26e-88	293
MS.gene014931.t1	MTR_8g040930	43.175	359	164	6	48	376	2	350	4.02e-86	268
MS.gene014931.t1	MTR_8g041240	43.175	359	164	6	48	376	2	350	4.02e-86	268
MS.gene014931.t1	MTR_8g073275	35.232	474	194	14	48	427	2	456	2.03e-70	229
MS.gene014931.t1	MTR_1g115575	24.289	457	292	12	8	427	138	577	1.29e-29	121
MS.gene014931.t1	MTR_8g105260	25.059	427	265	12	40	426	101	512	2.18e-24	105
MS.gene014931.t1	MTR_7g100430	25.000	440	271	14	38	420	124	561	1.51e-21	97.4
MS.gene014931.t1	MTR_2g101320	28.372	215	143	2	33	246	134	338	5.09e-21	95.9
MS.gene014931.t1	MTR_7g117620	26.688	311	189	7	40	330	119	410	1.13e-20	94.7
MS.gene014931.t1	MTR_2g096190	25.228	329	199	8	8	310	73	380	9.47e-20	92.0
MS.gene014931.t1	MTR_1g069110	21.429	448	253	9	8	402	21	422	1.17e-19	91.3
MS.gene014931.t1	MTR_7g099580	31.694	183	112	4	14	191	21	195	5.96e-19	87.8
MS.gene014931.t1	MTR_2g101310	27.103	214	141	3	36	246	137	338	2.41e-17	84.7
MS.gene014931.t1	MTR_2g101310	26.887	212	144	2	36	246	137	338	3.59e-17	84.0
MS.gene014931.t1	MTR_7g099570	29.319	191	121	3	8	193	12	193	4.66e-17	84.0
MS.gene014931.t1	MTR_4g062100	24.848	330	174	9	3	310	107	384	1.06e-15	79.3
MS.gene014931.t1	MTR_7g100390	23.765	324	209	7	8	310	56	362	1.41e-13	72.8
MS.gene014931.t1	MTR_1g032100	20.771	467	273	11	3	426	93	505	1.95e-13	72.4
MS.gene014931.t1	MTR_5g085500	26.347	167	109	4	67	228	1	158	8.64e-13	70.1
MS.gene014931.t1	MTR_5g085830	24.658	219	153	6	39	254	277	486	2.16e-12	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene014931.t1	AT4G10720	40.098	409	223	6	1	391	1	405	3.26e-90	280
MS.gene014931.t1	AT4G10720	44.409	313	172	2	1	311	1	313	1.76e-84	265
MS.gene014931.t1	AT1G14500	35.922	412	237	6	1	386	1	411	2.40e-79	252
MS.gene014931.t1	AT5G15500	36.404	445	252	11	5	423	6	445	1.12e-77	248
MS.gene014931.t1	AT5G54620	34.509	397	246	5	12	402	12	400	1.12e-73	237
MS.gene014931.t1	AT5G54610	36.772	378	228	6	1	370	1	375	3.48e-73	236
MS.gene014931.t1	AT1G14480	36.132	393	228	7	1	375	1	388	1.37e-72	234
MS.gene014931.t1	AT1G14480	32.570	393	199	8	1	375	1	345	4.40e-54	185
MS.gene014931.t1	AT5G15500	31.105	344	206	11	106	423	1	339	3.47e-34	130
MS.gene014931.t1	AT5G51160	31.636	275	162	5	53	311	31	295	6.75e-33	129
MS.gene014931.t1	AT3G09550	27.346	373	225	9	4	349	146	499	1.44e-27	115
MS.gene014931.t1	AT3G09550	27.346	373	225	9	4	349	146	499	1.44e-27	115
MS.gene014931.t1	AT3G09550	27.346	373	225	9	4	349	153	506	1.51e-27	115
MS.gene014931.t1	AT4G03500	26.509	381	209	14	39	372	194	550	1.37e-23	103
MS.gene014931.t1	AT4G03500	27.149	221	131	7	2	210	80	282	4.36e-11	65.5
MS.gene014931.t1	AT4G03500	26.509	381	209	14	39	372	194	550	1.37e-23	103
MS.gene014931.t1	AT4G03500	27.149	221	131	7	2	210	80	282	4.36e-11	65.5
MS.gene014931.t1	AT4G03500	26.509	381	209	14	39	372	217	573	1.84e-23	103
MS.gene014931.t1	AT4G03500	26.697	221	132	7	2	210	103	305	4.34e-11	65.5
MS.gene014931.t1	AT3G12360	25.708	459	282	16	8	427	136	574	1.93e-23	103
MS.gene014931.t1	AT3G12360	25.708	459	282	16	8	427	124	562	2.01e-23	103
MS.gene014931.t1	AT4G03460	29.927	274	159	11	83	346	245	495	8.03e-21	95.5
MS.gene014931.t1	AT4G03460	29.927	274	159	11	83	346	277	527	1.09e-20	95.1
MS.gene014931.t1	AT2G01680	22.174	460	261	12	3	425	96	495	2.51e-20	93.6
MS.gene014931.t1	AT5G02620	23.007	439	276	9	8	403	63	482	5.27e-20	92.8
MS.gene014931.t1	AT5G02620	23.007	439	276	9	8	403	63	482	5.27e-20	92.8
MS.gene014931.t1	AT5G02620	23.007	439	276	9	8	403	63	482	5.27e-20	92.8
MS.gene014931.t1	AT2G31820	22.276	413	261	11	4	377	192	583	6.43e-17	83.6
MS.gene014931.t1	AT5G02620	22.511	462	273	9	8	403	63	505	7.76e-17	83.2
MS.gene014931.t1	AT5G02620	22.511	462	273	9	8	403	63	505	7.76e-17	83.2
MS.gene014931.t1	AT1G34050	23.443	273	185	7	49	311	162	420	2.67e-15	78.6
MS.gene014931.t1	AT5G60070	23.585	318	194	6	3	309	110	389	3.06e-15	78.2
MS.gene014931.t1	AT1G03670	28.182	220	128	5	97	311	279	473	5.39e-15	77.4
MS.gene014931.t1	AT1G05640	22.556	399	204	12	38	339	114	504	5.92e-15	77.4
MS.gene014931.t1	AT1G10340	22.705	414	236	12	2	346	72	470	1.58e-14	75.9
MS.gene014931.t1	AT4G03480	26.354	277	180	7	41	311	357	615	1.33e-13	73.2
MS.gene014931.t1	AT4G03480	26.354	277	180	7	41	311	360	618	1.61e-13	73.2
MS.gene014931.t1	AT5G50140	25.333	225	134	7	5	227	31	223	1.37e-11	66.6
MS.gene014931.t1	AT4G03450	24.606	317	210	9	41	346	227	525	1.72e-11	66.6
MS.gene014931.t1	AT4G14390	22.102	371	248	9	42	395	276	622	2.89e-11	65.9
MS.gene014931.t1	AT4G03450	24.606	317	210	9	41	346	227	525	3.23e-11	65.9
MS.gene014931.t1	AT4G14390	22.102	371	248	9	42	395	295	641	3.44e-11	65.9
MS.gene014931.t1	AT4G11000	28.395	162	92	4	204	345	3	160	3.57e-11	63.5
MS.gene014931.t1	AT4G14390	22.115	416	268	12	8	395	255	642	7.88e-11	64.7

Find 70 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGCATATTGCTGCAGCTTC+TGG	0.104530	3.3:-86958143	MS.gene014931:CDS
AAAATGCGAACGTACTTCTT+AGG	0.194723	3.3:-86956440	MS.gene014931:CDS
TGTTTGTTCATCTAAATTCT+TGG	0.276195	3.3:+86956757	None:intergenic
GAACGTACTTCTTAGGGTTT+TGG	0.277692	3.3:-86956433	MS.gene014931:CDS
GACCATACATTCGAACCTTT+TGG	0.281103	3.3:+86956180	None:intergenic
TGCATATTGCTGCAGCTTCT+GGG	0.291052	3.3:-86958142	MS.gene014931:CDS
GCTTGGAAACTAAACGAGTA+TGG	0.326774	3.3:-86958074	MS.gene014931:CDS
GACTAAAACCTTCATTTGCT+TGG	0.341585	3.3:-86958091	MS.gene014931:CDS
ATTTGTGCTGCTGCATTCAA+TGG	0.351754	3.3:+86958254	None:intergenic
TTGCACATTGCTACGCAAAC+TGG	0.361427	3.3:-86957939	MS.gene014931:CDS
TTCTTGAGATCTTGCTTGGT+TGG	0.367274	3.3:-86957803	MS.gene014931:CDS
GATGTTCTTGAGATCTTGCT+TGG	0.381604	3.3:-86957807	MS.gene014931:CDS
GACCCTCTCTCCCTTTGATT+CGG	0.391340	3.3:+86957970	None:intergenic
GCCCAAAAGGTTCGAATGTA+TGG	0.400483	3.3:-86956182	MS.gene014931:CDS
TCTTGTAGTTAAATTCTTGT+CGG	0.420938	3.3:-86957907	MS.gene014931:CDS
TTTGTTTCCTTCTGAAAACT+TGG	0.426086	3.3:+86956139	None:intergenic
ATTGAATGCAGCAGCACAAA+TGG	0.428078	3.3:-86958252	MS.gene014931:CDS
AAATGCGAACGTACTTCTTA+GGG	0.430694	3.3:-86956439	MS.gene014931:CDS
ATAGCACCAAGCTATACATT+TGG	0.447152	3.3:-86956278	MS.gene014931:CDS
TTCGAATGTATGGTCGTGAA+TGG	0.451564	3.3:-86956172	MS.gene014931:CDS
TGATTTCTGCACTATAAACT+TGG	0.455664	3.3:+86956705	None:intergenic
GCTATACAAACTGATTCAAA+TGG	0.456485	3.3:-86958216	MS.gene014931:CDS
AAAGACCTTGTCCGAATCAA+AGG	0.465762	3.3:-86957981	MS.gene014931:CDS
ATACATTACATTAGCCCAAA+AGG	0.466320	3.3:-86956195	MS.gene014931:CDS
TTATAGCGTTCTAAGATGTA+TGG	0.468594	3.3:+86958191	None:intergenic
TTTAGTTTCCAAGCAAATGA+AGG	0.469820	3.3:+86958083	None:intergenic
TCTTGCTTGGTTGGCTTCGA+AGG	0.470106	3.3:-86957794	MS.gene014931:CDS
AAATTCTTGTCGGTTTGTCC+AGG	0.494151	3.3:-86957897	MS.gene014931:CDS
TGTCATATTGTGCAGGCAGT+TGG	0.496735	3.3:-86956812	MS.gene014931:intron
CTCTCCCTTTGATTCGGACA+AGG	0.497968	3.3:+86957976	None:intergenic
GATCGTAGCTCTTCGTGAAG+TGG	0.498077	3.3:+86956629	None:intergenic
TGCAAAGGAGTATCAACAAA+TGG	0.503702	3.3:+86958161	None:intergenic
ATAACACTTATACGTCCTCT+TGG	0.503876	3.3:+86956356	None:intergenic
AGTTTATAGTGCAGAAATCA+AGG	0.506788	3.3:-86956702	MS.gene014931:CDS
TTTGTGCTGCTGCATTCAAT+GGG	0.507115	3.3:+86958255	None:intergenic
TTTAGATGAACAAACAGCAT+TGG	0.510720	3.3:-86956750	MS.gene014931:CDS
AGCTGGTGGAGGAAAATTAG+TGG	0.517201	3.3:-86956468	MS.gene014931:CDS
CTGAATTGGGAGGATGAAGC+AGG	0.520550	3.3:-86957732	MS.gene014931:CDS
TCTTAAACGAGTAACACAAA+TGG	0.523638	3.3:+86956580	None:intergenic
AAGGACATGTTGATTAAAGC+AGG	0.524636	3.3:-86956683	MS.gene014931:CDS
ATTAAAGCAGGAGCTTTACA+TGG	0.524711	3.3:-86956671	MS.gene014931:CDS
TACACTGCCACAAGTATACA+TGG	0.526508	3.3:+86956236	None:intergenic
TGTCCACTTGCTTTATTCTG+TGG	0.533431	3.3:-86956326	MS.gene014931:CDS
ACAAAACAAATATTACAGAA+TGG	0.533575	3.3:-86958027	MS.gene014931:CDS
ACAATTCCAAATGTATAGCT+TGG	0.534815	3.3:+86956272	None:intergenic
TTGAATGCAGCAGCACAAAT+GGG	0.536468	3.3:-86958251	MS.gene014931:CDS
TCGAATGTATGGTCGTGAAT+GGG	0.544937	3.3:-86956171	MS.gene014931:CDS
AAGACCTTGTCCGAATCAAA+GGG	0.554193	3.3:-86957980	MS.gene014931:CDS
GCTTGGTGCTATAACTAGCA+TGG	0.562144	3.3:+86956289	None:intergenic
TATTGAGAAGTGACATGTGC+AGG	0.574312	3.3:+86957700	None:intergenic
GGCTATTCCATGTATACTTG+TGG	0.575896	3.3:-86956243	MS.gene014931:CDS
CTTAACCCTCCAGCTGGTGG+AGG	0.584385	3.3:-86956479	MS.gene014931:CDS
CCTTGTGATGAGAACGTCTG+TGG	0.589242	3.3:+86957766	None:intergenic
CAACCACAGAATAAAGCAAG+TGG	0.589426	3.3:+86956323	None:intergenic
CCACAGACGTTCTCATCACA+AGG	0.592862	3.3:-86957766	MS.gene014931:CDS
AGCTCTTCGTGAAGTGGAGT+AGG	0.598129	3.3:+86956635	None:intergenic
ACAAACAGCATTGGACATAG+TGG	0.603971	3.3:-86956741	MS.gene014931:CDS
GTCCGAATCAAAGGGAGAGA+GGG	0.604625	3.3:-86957972	MS.gene014931:CDS
ACACTTAACCCTCCAGCTGG+TGG	0.610202	3.3:-86956482	MS.gene014931:CDS
GAAGCTGCAGCAATATGCAA+AGG	0.614052	3.3:+86958146	None:intergenic
TGTCCGAATCAAAGGGAGAG+AGG	0.614649	3.3:-86957973	MS.gene014931:CDS
ACTTCTCAATAGCTTCCCAC+AGG	0.615391	3.3:-86957688	MS.gene014931:intron
GTGACATCTTCAATACAACC+TGG	0.619746	3.3:+86957879	None:intergenic
GCAACACTTAACCCTCCAGC+TGG	0.624740	3.3:-86956485	MS.gene014931:CDS
GTTTGCGTAGCAATGTGCAA+AGG	0.652449	3.3:+86957942	None:intergenic
ATGTGTTTATTAATGCCAAG+AGG	0.652670	3.3:-86956371	MS.gene014931:CDS
GAGAAGTGACATGTGCAGGA+TGG	0.692918	3.3:+86957704	None:intergenic
AAAACGGGTTCTGAATTGGG+AGG	0.707905	3.3:-86957742	MS.gene014931:CDS
TACATTTGGAATTGTCACTG+TGG	0.721071	3.3:-86956264	MS.gene014931:CDS
GGTCTTTATTAATGTCTACG+AGG	0.768754	3.3:+86957997	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAATATTAGTTTTAAATTG+AGG	+	chr3.3:86957303-86957322	None:intergenic	10.0%
!!	CTTATTTATAAGAGATATTT+AGG	+	chr3.3:86957416-86957435	None:intergenic	15.0%
!!	TATATTAATTAATTCAGCTA+TGG	-	chr3.3:86957485-86957504	MS.gene014931:intron	15.0%
!!!	GTTTGTTATAATTTTTAAAG+TGG	-	chr3.3:86957232-86957251	MS.gene014931:intron	15.0%
!!!	TATTTACTCATGTTTTTAAA+AGG	-	chr3.3:86957090-86957109	MS.gene014931:intron	15.0%
!!!	TTTAAAACTAATATTTTCTC+TGG	-	chr3.3:86957306-86957325	MS.gene014931:intron	15.0%
!!!	TTTTGATTTGACAATTAAAT+TGG	-	chr3.3:86957198-86957217	MS.gene014931:intron	15.0%
!!	ACAAAACAAATATTACAGAA+TGG	-	chr3.3:86956369-86956388	MS.gene014931:CDS	20.0%
!!	AGTAGAAAGAAAAGAAATAT+AGG	+	chr3.3:86956747-86956766	None:intergenic	20.0%
!!	GTAGAAAGAAAAGAAATATA+GGG	+	chr3.3:86956746-86956765	None:intergenic	20.0%
!!!	AATATTTGTTTTGTAAAGCA+AGG	+	chr3.3:86956363-86956382	None:intergenic	20.0%
!!!	ATATGCCTTTAAAATACTTA+GGG	-	chr3.3:86956814-86956833	MS.gene014931:intron	20.0%
!!!	CTTGTTTTTCTTTTGTATTA+CGG	-	chr3.3:86956874-86956893	MS.gene014931:intron	20.0%
!!!	TATATGCCTTTAAAATACTT+AGG	-	chr3.3:86956813-86956832	MS.gene014931:intron	20.0%
!	AAACTAAATTAACTCAGCTA+TGG	-	chr3.3:86957558-86957577	MS.gene014931:intron	25.0%
!	CACATAAATATCTACAAATG+TGG	-	chr3.3:86956771-86956790	MS.gene014931:CDS	25.0%
!	TCTTGTAGTTAAATTCTTGT+CGG	-	chr3.3:86956489-86956508	MS.gene014931:CDS	25.0%
!	TGTTTGTTCATCTAAATTCT+TGG	+	chr3.3:86957642-86957661	None:intergenic	25.0%
!	TTGTTTGATCTTCAATGTTA+TGG	+	chr3.3:86957054-86957073	None:intergenic	25.0%
!!!	AAGTACCCTAAGTATTTTAA+AGG	+	chr3.3:86956822-86956841	None:intergenic	25.0%
	AACTAAGGGTCTCTTTATAA+GGG	+	chr3.3:86957012-86957031	None:intergenic	30.0%
	ACAATTCCAAATGTATAGCT+TGG	+	chr3.3:86958127-86958146	None:intergenic	30.0%
	AGTTTATAGTGCAGAAATCA+AGG	-	chr3.3:86957694-86957713	MS.gene014931:CDS	30.0%
	ATACATTACATTAGCCCAAA+AGG	-	chr3.3:86958201-86958220	MS.gene014931:CDS	30.0%
	ATGTGTTTATTAATGCCAAG+AGG	-	chr3.3:86958025-86958044	MS.gene014931:CDS	30.0%
	TCTTAAACGAGTAACACAAA+TGG	+	chr3.3:86957819-86957838	None:intergenic	30.0%
	TGATTTCTGCACTATAAACT+TGG	+	chr3.3:86957694-86957713	None:intergenic	30.0%
	TTTAGATGAACAAACAGCAT+TGG	-	chr3.3:86957646-86957665	MS.gene014931:intron	30.0%
!	AGTTTTCAGAAGGAAACAAA+TGG	-	chr3.3:86958260-86958279	MS.gene014931:CDS	30.0%
!	GCTATACAAACTGATTCAAA+TGG	-	chr3.3:86956180-86956199	MS.gene014931:CDS	30.0%
!	TTTAGTTTCCAAGCAAATGA+AGG	+	chr3.3:86956316-86956335	None:intergenic	30.0%
!	TTTGTTTCCTTCTGAAAACT+TGG	+	chr3.3:86958260-86958279	None:intergenic	30.0%
!	TTTTAGTCTCATAATCTCAG+TGG	+	chr3.3:86956293-86956312	None:intergenic	30.0%
!	TTTTGTAAAGCAAGGTGTAT+GGG	+	chr3.3:86956355-86956374	None:intergenic	30.0%
!!	TCAATCAAACTACTAGTCTT+TGG	+	chr3.3:86957440-86957459	None:intergenic	30.0%
!!	TTATAGCGTTCTAAGATGTA+TGG	+	chr3.3:86956208-86956227	None:intergenic	30.0%
!!!	GGTACTTTTTTGAAGAGTTT+TGG	-	chr3.3:86956835-86956854	MS.gene014931:intron	30.0%
!!!	TTTTTTGAAGAGTTTTGGAG+AGG	-	chr3.3:86956840-86956859	MS.gene014931:intron	30.0%
	AAAATGCGAACGTACTTCTT+AGG	-	chr3.3:86957956-86957975	MS.gene014931:CDS	35.0%
	AAATGCGAACGTACTTCTTA+GGG	-	chr3.3:86957957-86957976	MS.gene014931:CDS	35.0%
	ACTAAGGGTCTCTTTATAAG+GGG	+	chr3.3:86957011-86957030	None:intergenic	35.0%
	ATAACACTTATACGTCCTCT+TGG	+	chr3.3:86958043-86958062	None:intergenic	35.0%
	ATAGCACCAAGCTATACATT+TGG	-	chr3.3:86958118-86958137	MS.gene014931:CDS	35.0%
	ATTAAAGCAGGAGCTTTACA+TGG	-	chr3.3:86957725-86957744	MS.gene014931:CDS	35.0%
	CAACTAAGGGTCTCTTTATA+AGG	+	chr3.3:86957013-86957032	None:intergenic	35.0%
	GACTAAAACCTTCATTTGCT+TGG	-	chr3.3:86956305-86956324	MS.gene014931:CDS	35.0%
	GGTCTTTATTAATGTCTACG+AGG	+	chr3.3:86956402-86956421	None:intergenic	35.0%
	GTTCTCATCACAAGGAAAAA+CGG	-	chr3.3:86956638-86956657	MS.gene014931:CDS	35.0%
	TAAAGAGACCCTTAGTTGTT+TGG	-	chr3.3:86957015-86957034	MS.gene014931:intron	35.0%
	TTCTCATCACAAGGAAAAAC+GGG	-	chr3.3:86956639-86956658	MS.gene014931:CDS	35.0%
!	AAGGACATGTTGATTAAAGC+AGG	-	chr3.3:86957713-86957732	MS.gene014931:CDS	35.0%
!	ACCATACATTCGAACCTTTT+GGG	+	chr3.3:86958218-86958237	None:intergenic	35.0%
!	ACTTGTGGCAGTGTATTTTT+GGG	-	chr3.3:86958168-86958187	MS.gene014931:CDS	35.0%
!	GATGTATCCAAGTTTTCAGA+AGG	-	chr3.3:86958250-86958269	MS.gene014931:CDS	35.0%
!	GTTTTGTAAAGCAAGGTGTA+TGG	+	chr3.3:86956356-86956375	None:intergenic	35.0%
!	TACATTTGGAATTGTCACTG+TGG	-	chr3.3:86958132-86958151	MS.gene014931:CDS	35.0%
!	TACTTGTGGCAGTGTATTTT+TGG	-	chr3.3:86958167-86958186	MS.gene014931:CDS	35.0%
!!	TGCAAAGGAGTATCAACAAA+TGG	+	chr3.3:86956238-86956257	None:intergenic	35.0%
	AAAGACCTTGTCCGAATCAA+AGG	-	chr3.3:86956415-86956434	MS.gene014931:CDS	40.0%
	AAGACCTTGTCCGAATCAAA+GGG	-	chr3.3:86956416-86956435	MS.gene014931:CDS	40.0%
	ATCTCGAGACCAAACAACTA+AGG	+	chr3.3:86957027-86957046	None:intergenic	40.0%
	ATGGTCATGTCATATTGTGC+AGG	-	chr3.3:86957577-86957596	MS.gene014931:intron	40.0%
	ATTGAATGCAGCAGCACAAA+TGG	-	chr3.3:86956144-86956163	MS.gene014931:CDS	40.0%
	CAACCACAGAATAAAGCAAG+TGG	+	chr3.3:86958076-86958095	None:intergenic	40.0%
	CTAAGGGTCTCTTTATAAGG+GGG	+	chr3.3:86957010-86957029	None:intergenic	40.0%
	GATGTTCTTGAGATCTTGCT+TGG	-	chr3.3:86956589-86956608	MS.gene014931:CDS	40.0%
	GCTTGGAAACTAAACGAGTA+TGG	-	chr3.3:86956322-86956341	MS.gene014931:CDS	40.0%
	GGCTATTCCATGTATACTTG+TGG	-	chr3.3:86958153-86958172	MS.gene014931:CDS	40.0%
	GTGACATCTTCAATACAACC+TGG	+	chr3.3:86956520-86956539	None:intergenic	40.0%
	TAAGGGTCTCTTTATAAGGG+GGG	+	chr3.3:86957009-86957028	None:intergenic	40.0%
	TACACTGCCACAAGTATACA+TGG	+	chr3.3:86958163-86958182	None:intergenic	40.0%
	TATTGAGAAGTGACATGTGC+AGG	+	chr3.3:86956699-86956718	None:intergenic	40.0%
	TCGAATGTATGGTCGTGAAT+GGG	-	chr3.3:86958225-86958244	MS.gene014931:CDS	40.0%
	TCTCGAGACCAAACAACTAA+GGG	+	chr3.3:86957026-86957045	None:intergenic	40.0%
	TTCGAATGTATGGTCGTGAA+TGG	-	chr3.3:86958224-86958243	MS.gene014931:CDS	40.0%
	TTCTTGAGATCTTGCTTGGT+TGG	-	chr3.3:86956593-86956612	MS.gene014931:CDS	40.0%
	TTGAATGCAGCAGCACAAAT+GGG	-	chr3.3:86956145-86956164	MS.gene014931:CDS	40.0%
!	ACAAACAGCATTGGACATAG+TGG	-	chr3.3:86957655-86957674	MS.gene014931:intron	40.0%
!	ATTTGTGCTGCTGCATTCAA+TGG	+	chr3.3:86956145-86956164	None:intergenic	40.0%
!	GAACGTACTTCTTAGGGTTT+TGG	-	chr3.3:86957963-86957982	MS.gene014931:CDS	40.0%
!	GACCATACATTCGAACCTTT+TGG	+	chr3.3:86958219-86958238	None:intergenic	40.0%
!	TGTCCACTTGCTTTATTCTG+TGG	-	chr3.3:86958070-86958089	MS.gene014931:CDS	40.0%
!	TTTGTGCTGCTGCATTCAAT+GGG	+	chr3.3:86956144-86956163	None:intergenic	40.0%
!!	AAATTCTTGTCGGTTTGTCC+AGG	-	chr3.3:86956499-86956518	MS.gene014931:CDS	40.0%
!!	AGGAAAAACGGGTTCTGAAT+TGG	-	chr3.3:86956650-86956669	MS.gene014931:CDS	40.0%
!!	CTTGTGGCAGTGTATTTTTG+GGG	-	chr3.3:86958169-86958188	MS.gene014931:CDS	40.0%
!!	GGAAAAACGGGTTCTGAATT+GGG	-	chr3.3:86956651-86956670	MS.gene014931:CDS	40.0%
!!!	TTTGAAGAGTTTTGGAGAGG+AGG	-	chr3.3:86956843-86956862	MS.gene014931:intron	40.0%
	ACTTCTCAATAGCTTCCCAC+AGG	-	chr3.3:86956708-86956727	MS.gene014931:CDS	45.0%
	AGCTGGTGGAGGAAAATTAG+TGG	-	chr3.3:86957928-86957947	MS.gene014931:CDS	45.0%
	CTTTATAAGGGGGGTCTGAA+GGG	+	chr3.3:86957000-86957019	None:intergenic	45.0%
	GAAGCTGCAGCAATATGCAA+AGG	+	chr3.3:86956253-86956272	None:intergenic	45.0%
	GCCCAAAAGGTTCGAATGTA+TGG	-	chr3.3:86958214-86958233	MS.gene014931:CDS	45.0%
	GTTTGCGTAGCAATGTGCAA+AGG	+	chr3.3:86956457-86956476	None:intergenic	45.0%
	TCTTTATAAGGGGGGTCTGA+AGG	+	chr3.3:86957001-86957020	None:intergenic	45.0%
	TGCATATTGCTGCAGCTTCT+GGG	-	chr3.3:86956254-86956273	MS.gene014931:CDS	45.0%
	TGTCATATTGTGCAGGCAGT+TGG	-	chr3.3:86957584-86957603	MS.gene014931:intron	45.0%
	TTGCACATTGCTACGCAAAC+TGG	-	chr3.3:86956457-86956476	MS.gene014931:CDS	45.0%
	TTGCATATTGCTGCAGCTTC+TGG	-	chr3.3:86956253-86956272	MS.gene014931:CDS	45.0%
	TTTATAAGGGGGGTCTGAAG+GGG	+	chr3.3:86956999-86957018	None:intergenic	45.0%
!	ACTAATTTTCCTCCACCAGC+TGG	+	chr3.3:86957929-86957948	None:intergenic	45.0%
!!	AAAACGGGTTCTGAATTGGG+AGG	-	chr3.3:86956654-86956673	MS.gene014931:CDS	45.0%
!!	GCTTGGTGCTATAACTAGCA+TGG	+	chr3.3:86958110-86958129	None:intergenic	45.0%
	AGCTCTTCGTGAAGTGGAGT+AGG	+	chr3.3:86957764-86957783	None:intergenic	50.0%
	AGGGATGTGTCTCATACCTG+TGG	+	chr3.3:86956727-86956746	None:intergenic	50.0%
	CCACAGACGTTCTCATCACA+AGG	-	chr3.3:86956630-86956649	MS.gene014931:CDS	50.0%
	CCTTGTGATGAGAACGTCTG+TGG	+	chr3.3:86956633-86956652	None:intergenic	50.0%
	CTGAATTGGGAGGATGAAGC+AGG	-	chr3.3:86956664-86956683	MS.gene014931:CDS	50.0%
	GACCCTCTCTCCCTTTGATT+CGG	+	chr3.3:86956429-86956448	None:intergenic	50.0%
	GAGAAGTGACATGTGCAGGA+TGG	+	chr3.3:86956695-86956714	None:intergenic	50.0%
	GATCGTAGCTCTTCGTGAAG+TGG	+	chr3.3:86957770-86957789	None:intergenic	50.0%
	GGGATGTGTCTCATACCTGT+GGG	+	chr3.3:86956726-86956745	None:intergenic	50.0%
	GTCCGAATCAAAGGGAGAGA+GGG	-	chr3.3:86956424-86956443	MS.gene014931:CDS	50.0%
	TGTCCGAATCAAAGGGAGAG+AGG	-	chr3.3:86956423-86956442	MS.gene014931:CDS	50.0%
!	AATTTTCCTCCACCAGCTGG+AGG	+	chr3.3:86957926-86957945	None:intergenic	50.0%
!	ATTTTCCTCCACCAGCTGGA+GGG	+	chr3.3:86957925-86957944	None:intergenic	50.0%
!!	CTCTCCCTTTGATTCGGACA+AGG	+	chr3.3:86956423-86956442	None:intergenic	50.0%
!!	TCTTGCTTGGTTGGCTTCGA+AGG	-	chr3.3:86956602-86956621	MS.gene014931:CDS	50.0%
	ACACTTAACCCTCCAGCTGG+TGG	-	chr3.3:86957914-86957933	MS.gene014931:CDS	55.0%
	GCAACACTTAACCCTCCAGC+TGG	-	chr3.3:86957911-86957930	MS.gene014931:CDS	55.0%
	CTTAACCCTCCAGCTGGTGG+AGG	-	chr3.3:86957917-86957936	MS.gene014931:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	86956133	86958285	86956133	ID=MS.gene014931
chr3.3	mRNA	86956133	86958285	86956133	ID=MS.gene014931.t1;Parent=MS.gene014931
chr3.3	exon	86957689	86958285	86957689	ID=MS.gene014931.t1.exon1;Parent=MS.gene014931.t1
chr3.3	CDS	86957689	86958285	86957689	ID=cds.MS.gene014931.t1;Parent=MS.gene014931.t1
chr3.3	exon	86956133	86956819	86956133	ID=MS.gene014931.t1.exon2;Parent=MS.gene014931.t1
chr3.3	CDS	86956133	86956819	86956133	ID=cds.MS.gene014931.t1;Parent=MS.gene014931.t1

Gene Sequence

>MS.gene014931

ATGAATGACCCATTGAATGCAGCAGCACAAATGGGAGATATAGACTTGCTATACAAACTGATTCAAATGGATCCATACATCTTAGAACGCTATAATTTAATACCATTTGTTGATACTCCTTTGCATATTGCTGCAGCTTCTGGGCATGTAAGTTTTGCCACTGAGATTATGAGACTAAAACCTTCATTTGCTTGGAAACTAAACGAGTATGGACTCAGTCCCATACACCTTGCTTTACAAAACAAATATTACAGAATGGTGTGTCGCCTCGTAGACATTAATAAAGACCTTGTCCGAATCAAAGGGAGAGAGGGTCTAACTCCTTTGCACATTGCTACGCAAACTGGAAACTTTGATCTTGTAGTTAAATTCTTGTCGGTTTGTCCAGGTTGTATTGAAGATGTCACAGTTCGAAGTGAGACTGCTTTGCATCTTGCTGTGAAATATAAGCAGTTTGATGTTCTTGAGATCTTGCTTGGTTGGCTTCGAAGGACATGCCACAGACGTTCTCATCACAAGGAAAAACGGGTTCTGAATTGGGAGGATGAAGCAGGCAACACCATCCTGCACATGTCACTTCTCAATAGCTTCCCACAGGTATGAGACACATCCCTATATTTCTTTTCTTTCTACTTTTTCACATAAATATCTACAAATGTGGCTGATGCGACTGCAATGCATATATGCCTTTAAAATACTTAGGGTACTTTTTTGAAGAGTTTTGGAGAGGAGGAGAAGAGACTTGTTTTTCTTTTGTATTACGGACACTTTAAAATATTTTTTAAAATCAATCAAAAGTTGAAGTATCGTATGATCATTTATCATTTTTTTGAATAACAAATTTATATTAAAATATAGACTTACCCCTTCAGACCCCCCTTATAAAGAGACCCTTAGTTGTTTGGTCTCGAGATATTTCCATAACATTGAAGATCAAACAAAGTTTTATGTAATCGATATTTACTCATGTTTTTAAAAGGATAATATACATTTATTTGATACTATTTAATAAATATCAAATTTTGAAATTTAATAAAATTTTGTTAAATTAATCAACTCAATGACTTTTGATTTGACAATTAAATTGGTGAAATTCAGTGTTTGTTATAATTTTTAAAGTGGAGTAACTCAGTTGAGAGTTAATCTTAGAGCGATTGCAGTTACGTACCTCAATTTAAAACTAATATTTTCTCTGGTCTTATTTATAAGAGACATTTGAGTCAATAAAAGTTAGATGTATCTGATTAAGATTTTGAATTAGATAGATCAACTTTTGTTGACCTAAATATCTCTTATAAATAAGACCAAAGACTAGTAGTTTGATTGAAAATCAAAATCAATCTAAGTTTCAATATATTAATTAATTCAGCTATGGTGTAGTTTGACATTTTCAAATTATTAATAATTTTTCTCTTCTATTTAAAAAAACTAAATTAACTCAGCTATGGTCATGTCATATTGTGCAGGCAGTTGGATTGTTGATAGATAGCAACATAGACATAAATGCCAAGAATTTAGATGAACAAACAGCATTGGACATAGTGGAGCAGATTCAGAGCCAAGTTTATAGTGCAGAAATCAAGGACATGTTGATTAAAGCAGGAGCTTTACATGGTTTTTCACTTGCTCCTACTCCACTTCACGAAGAGCTACGATCAAAAATCACATTTAACGAGAGAATAGCCATTTGTGTTACTCGTTTAAGAAGAAGAATTTCAAATGACACAAGAAACGCTTTGTTAGTAGTTGCTATTCTTTTTGCAACAAGTGCATATGAAGCAACACTTAACCCTCCAGCTGGTGGAGGAAAATTAGTGGTGATGAAAATGCGAACGTACTTCTTAGGGTTTTGGTCGATTAATACATTTTCATTTTATGTTTCAGTTTTGATGATGTGTTTATTAATGCCAAGAGGACGTATAAGTGTTATAGTAACTTGTCCACTTGCTTTATTCTGTGGTTGTTATATGTTTTCCATGCTAGTTATAGCACCAAGCTATACATTTGGAATTGTCACTGTGGCTATTCCATGTATACTTGTGGCAGTGTATTTTTGGGGAGCTATGATATACATTACATTAGCCCAAAAGGTTCGAATGTATGGTCGTGAATGGGAAGATGTATCCAAGTTTTCAGAAGGAAACAAATGGTAA

Protein sequence

>MS.gene014931.t1

MNDPLNAAAQMGDIDLLYKLIQMDPYILERYNLIPFVDTPLHIAAASGHVSFATEIMRLKPSFAWKLNEYGLSPIHLALQNKYYRMVCRLVDINKDLVRIKGREGLTPLHIATQTGNFDLVVKFLSVCPGCIEDVTVRSETALHLAVKYKQFDVLEILLGWLRRTCHRRSHHKEKRVLNWEDEAGNTILHMSLLNSFPQAVGLLIDSNIDINAKNLDEQTALDIVEQIQSQVYSAEIKDMLIKAGALHGFSLAPTPLHEELRSKITFNERIAICVTRLRRRISNDTRNALLVVAILFATSAYEATLNPPAGGGKLVVMKMRTYFLGFWSINTFSFYVSVLMMCLLMPRGRISVIVTCPLALFCGCYMFSMLVIAPSYTFGIVTVAIPCILVAVYFWGAMIYITLAQKVRMYGREWEDVSKFSEGNKW