AlfalfaGEDB | MS.gene51258

M. sativa cultivar XinJiangDaYe / MS.gene51258

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13962.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51258.t1	XP_003598604.2	52.5	356	138	4	3	330	4	356	6.90E-71	277.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51258.t1	Q8GYH5	49.3	304	131	5	8	292	4	303	1.7e-17	91.7

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51258.t1	G7IYT6	52.5	356	138	4	3	330	4	356	5.0e-71	277.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene51258	0.826541	2.56E-54	-1.69E-46
MS.gene049171	MS.gene51258	0.82235	2.48E-53	-1.69E-46
MS.gene049217	MS.gene51258	0.82587	3.70E-54	-1.69E-46
MS.gene049222	MS.gene51258	0.830379	3.04E-55	-1.69E-46
MS.gene049285	MS.gene51258	0.827985	1.16E-54	-1.69E-46
MS.gene049320	MS.gene51258	0.832859	7.43E-56	-1.69E-46
MS.gene049488	MS.gene51258	0.814362	1.60E-51	-1.69E-46
MS.gene049609	MS.gene51258	0.840611	7.83E-58	-1.69E-46
MS.gene049633	MS.gene51258	0.806699	7.25E-50	-1.69E-46
MS.gene049656	MS.gene51258	0.819015	1.45E-52	-1.69E-46
MS.gene049805	MS.gene51258	0.845455	4.02E-59	-1.69E-46
MS.gene05010	MS.gene51258	0.814193	1.75E-51	-1.69E-46
MS.gene050170	MS.gene51258	0.815293	9.96E-52	-1.69E-46
MS.gene050323	MS.gene51258	0.811417	7.07E-51	-1.69E-46
MS.gene050504	MS.gene51258	0.824358	8.43E-54	-1.69E-46
MS.gene050518	MS.gene51258	0.805943	1.05E-49	-1.69E-46
MS.gene050577	MS.gene51258	0.847835	8.99E-60	-1.69E-46
MS.gene050612	MS.gene51258	0.823763	1.16E-53	-1.69E-46
MS.gene050675	MS.gene51258	0.821353	4.22E-53	-1.69E-46
MS.gene050699	MS.gene51258	0.852238	5.26E-61	-1.69E-46
MS.gene050747	MS.gene51258	0.840878	6.67E-58	-1.69E-46
MS.gene050772	MS.gene51258	0.846282	2.40E-59	-1.69E-46
MS.gene05080	MS.gene51258	0.816286	5.98E-52	-1.69E-46
MS.gene050868	MS.gene51258	0.814367	1.60E-51	-1.69E-46
MS.gene050871	MS.gene51258	0.813491	2.49E-51	-1.69E-46
MS.gene050950	MS.gene51258	0.824922	6.21E-54	-1.69E-46
MS.gene050986	MS.gene51258	0.820462	6.77E-53	-1.69E-46
MS.gene051167	MS.gene51258	-0.822703	2.06E-53	-1.69E-46
MS.gene051336	MS.gene51258	0.802522	5.39E-49	-1.69E-46
MS.gene051551	MS.gene51258	0.812332	4.47E-51	-1.69E-46
MS.gene051838	MS.gene51258	0.80994	1.48E-50	-1.69E-46
MS.gene052164	MS.gene51258	0.849778	2.60E-60	-1.69E-46
MS.gene052318	MS.gene51258	0.804716	1.89E-49	-1.69E-46
MS.gene052482	MS.gene51258	0.815502	8.95E-52	-1.69E-46
MS.gene052486	MS.gene51258	0.829919	3.93E-55	-1.69E-46
MS.gene052503	MS.gene51258	0.843163	1.66E-58	-1.69E-46
MS.gene052505	MS.gene51258	0.800291	1.54E-48	-1.69E-46
MS.gene052506	MS.gene51258	0.821698	3.52E-53	-1.69E-46
MS.gene052615	MS.gene51258	0.882986	6.57E-71	-1.69E-46
MS.gene052822	MS.gene51258	0.804696	1.91E-49	-1.69E-46
MS.gene052823	MS.gene51258	0.837317	5.58E-57	-1.69E-46
MS.gene052825	MS.gene51258	0.834255	3.33E-56	-1.69E-46
MS.gene052916	MS.gene51258	0.806647	7.43E-50	-1.69E-46
MS.gene052966	MS.gene51258	0.827222	1.76E-54	-1.69E-46
MS.gene052982	MS.gene51258	0.802309	5.96E-49	-1.69E-46
MS.gene053203	MS.gene51258	0.843202	1.62E-58	-1.69E-46
MS.gene053207	MS.gene51258	0.824922	6.21E-54	-1.69E-46
MS.gene053213	MS.gene51258	0.836571	8.66E-57	-1.69E-46
MS.gene053286	MS.gene51258	0.831484	1.63E-55	-1.69E-46
MS.gene053436	MS.gene51258	0.865859	4.35E-65	-1.69E-46
MS.gene053480	MS.gene51258	0.848186	7.20E-60	-1.69E-46
MS.gene053574	MS.gene51258	0.842107	3.16E-58	-1.69E-46
MS.gene053626	MS.gene51258	0.864227	1.41E-64	-1.69E-46
MS.gene053632	MS.gene51258	0.858592	7.41E-63	-1.69E-46
MS.gene053824	MS.gene51258	0.81998	8.73E-53	-1.69E-46
MS.gene053916	MS.gene51258	0.826658	2.40E-54	-1.69E-46
MS.gene054003	MS.gene51258	0.821035	5.00E-53	-1.69E-46
MS.gene054408	MS.gene51258	0.812297	4.55E-51	-1.69E-46
MS.gene054595	MS.gene51258	0.843402	1.43E-58	-1.69E-46
MS.gene054600	MS.gene51258	0.827858	1.24E-54	-1.69E-46
MS.gene054642	MS.gene51258	0.815209	1.04E-51	-1.69E-46
MS.gene054927	MS.gene51258	0.835071	2.08E-56	-1.69E-46
MS.gene05494	MS.gene51258	0.802469	5.53E-49	-1.69E-46
MS.gene054954	MS.gene51258	0.820608	6.27E-53	-1.69E-46
MS.gene05505	MS.gene51258	0.812252	4.66E-51	-1.69E-46
MS.gene055206	MS.gene51258	0.812745	3.63E-51	-1.69E-46
MS.gene055362	MS.gene51258	0.841396	4.87E-58	-1.69E-46
MS.gene055486	MS.gene51258	0.825582	4.33E-54	-1.69E-46
MS.gene055502	MS.gene51258	0.8459	3.04E-59	-1.69E-46
MS.gene055577	MS.gene51258	0.818535	1.86E-52	-1.69E-46
MS.gene055722	MS.gene51258	0.824007	1.02E-53	-1.69E-46
MS.gene055750	MS.gene51258	0.802636	5.11E-49	-1.69E-46
MS.gene05589	MS.gene51258	0.810984	8.78E-51	-1.69E-46
MS.gene055909	MS.gene51258	0.807503	4.90E-50	-1.69E-46
MS.gene055911	MS.gene51258	0.808731	2.68E-50	-1.69E-46
MS.gene055941	MS.gene51258	0.808575	2.90E-50	-1.69E-46
MS.gene05601	MS.gene51258	0.814336	1.62E-51	-1.69E-46
MS.gene056040	MS.gene51258	0.816596	5.10E-52	-1.69E-46
MS.gene056166	MS.gene51258	0.827387	1.61E-54	-1.69E-46
MS.gene056374	MS.gene51258	0.800894	1.16E-48	-1.69E-46
MS.gene056448	MS.gene51258	0.813249	2.82E-51	-1.69E-46
MS.gene056504	MS.gene51258	0.833882	4.13E-56	-1.69E-46
MS.gene056510	MS.gene51258	0.833727	4.52E-56	-1.69E-46
MS.gene056610	MS.gene51258	0.811892	5.58E-51	-1.69E-46
MS.gene056657	MS.gene51258	0.833005	6.84E-56	-1.69E-46
MS.gene056878	MS.gene51258	0.827375	1.62E-54	-1.69E-46
MS.gene057076	MS.gene51258	0.834712	2.56E-56	-1.69E-46
MS.gene057086	MS.gene51258	0.813493	2.49E-51	-1.69E-46
MS.gene057416	MS.gene51258	0.840949	6.39E-58	-1.69E-46
MS.gene057734	MS.gene51258	0.829561	4.81E-55	-1.69E-46
MS.gene057831	MS.gene51258	0.825855	3.73E-54	-1.69E-46
MS.gene05787	MS.gene51258	0.82084	5.54E-53	-1.69E-46
MS.gene058130	MS.gene51258	0.818389	2.01E-52	-1.69E-46
MS.gene058157	MS.gene51258	0.804471	2.13E-49	-1.69E-46
MS.gene058338	MS.gene51258	0.818224	2.19E-52	-1.69E-46
MS.gene05837	MS.gene51258	0.829938	3.89E-55	-1.69E-46
MS.gene058419	MS.gene51258	0.844455	7.48E-59	-1.69E-46
MS.gene058544	MS.gene51258	0.818246	2.17E-52	-1.69E-46
MS.gene058838	MS.gene51258	0.8233	1.49E-53	-1.69E-46
MS.gene059022	MS.gene51258	0.820562	6.42E-53	-1.69E-46
MS.gene059023	MS.gene51258	0.82241	2.41E-53	-1.69E-46
MS.gene059367	MS.gene51258	0.853336	2.56E-61	-1.69E-46
MS.gene059368	MS.gene51258	0.849691	2.75E-60	-1.69E-46
MS.gene059455	MS.gene51258	0.813956	1.97E-51	-1.69E-46
MS.gene059677	MS.gene51258	0.811746	6.00E-51	-1.69E-46
MS.gene059718	MS.gene51258	0.851223	1.02E-60	-1.69E-46
MS.gene059801	MS.gene51258	0.813358	2.67E-51	-1.69E-46
MS.gene059865	MS.gene51258	0.808596	2.87E-50	-1.69E-46
MS.gene06000	MS.gene51258	0.80627	8.93E-50	-1.69E-46
MS.gene060482	MS.gene51258	0.84253	2.44E-58	-1.69E-46
MS.gene060485	MS.gene51258	0.805989	1.02E-49	-1.69E-46
MS.gene060778	MS.gene51258	0.856138	3.94E-62	-1.69E-46
MS.gene06077	MS.gene51258	0.8442	8.76E-59	-1.69E-46
MS.gene060835	MS.gene51258	0.831428	1.68E-55	-1.69E-46
MS.gene060837	MS.gene51258	0.813304	2.74E-51	-1.69E-46
MS.gene06092	MS.gene51258	0.808223	3.44E-50	-1.69E-46
MS.gene060982	MS.gene51258	0.825701	4.06E-54	-1.69E-46
MS.gene061150	MS.gene51258	0.809497	1.84E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene69687	MS.gene51258	PPI
MS.gene25024	MS.gene51258	PPI
MS.gene23811	MS.gene51258	PPI
MS.gene23810	MS.gene51258	PPI
MS.gene51258	MS.gene32723	PPI
MS.gene51258	MS.gene053363	PPI
MS.gene51335	MS.gene51258	PPI
MS.gene024753	MS.gene51258	PPI
MS.gene78281	MS.gene51258	PPI
MS.gene005995	MS.gene51258	PPI
MS.gene037950	MS.gene51258	PPI
MS.gene70008	MS.gene51258	PPI
MS.gene51258	MS.gene32726	PPI
MS.gene51258	MS.gene71122	PPI
MS.gene068249	MS.gene51258	PPI
MS.gene051003	MS.gene51258	PPI
MS.gene64441	MS.gene51258	PPI
MS.gene51258	MS.gene60920	PPI
MS.gene51258	MS.gene73119	PPI
MS.gene24806	MS.gene51258	PPI
MS.gene51258	MS.gene92243	PPI
MS.gene004844	MS.gene51258	PPI
MS.gene30176	MS.gene51258	PPI
MS.gene51258	MS.gene34009	PPI
MS.gene007487	MS.gene51258	PPI
MS.gene51258	MS.gene014931	PPI
MS.gene51258	MS.gene21888	PPI
MS.gene018518	MS.gene51258	PPI
MS.gene066464	MS.gene51258	PPI
MS.gene51262	MS.gene51258	PPI
MS.gene050270	MS.gene51258	PPI
MS.gene24922	MS.gene51258	PPI
MS.gene027073	MS.gene51258	PPI
MS.gene010912	MS.gene51258	PPI
MS.gene050457	MS.gene51258	PPI
MS.gene51258	MS.gene81055	PPI
MS.gene51258	MS.gene65775	PPI
MS.gene51258	MS.gene80163	PPI
MS.gene34712	MS.gene51258	PPI
MS.gene51258	MS.gene02469	PPI
MS.gene39623	MS.gene51258	PPI
MS.gene065848	MS.gene51258	PPI
MS.gene027441	MS.gene51258	PPI
MS.gene36842	MS.gene51258	PPI
MS.gene51258	MS.gene51278	PPI
MS.gene066046	MS.gene51258	PPI
MS.gene51258	MS.gene87218	PPI
MS.gene027075	MS.gene51258	PPI
MS.gene41291	MS.gene51258	PPI
MS.gene27223	MS.gene51258	PPI
MS.gene050272	MS.gene51258	PPI
MS.gene51258	MS.gene23881	PPI
MS.gene51258	MS.gene062662	PPI
MS.gene052956	MS.gene51258	PPI
MS.gene51258	MS.gene30177	PPI
MS.gene22482	MS.gene51258	PPI
MS.gene043662	MS.gene51258	PPI
MS.gene51258	MS.gene008833	PPI
MS.gene039682	MS.gene51258	PPI
MS.gene043742	MS.gene51258	PPI
MS.gene061932	MS.gene51258	PPI
MS.gene85534	MS.gene51258	PPI
MS.gene26532	MS.gene51258	PPI
MS.gene042783	MS.gene51258	PPI
MS.gene064542	MS.gene51258	PPI
MS.gene066467	MS.gene51258	PPI
MS.gene47479	MS.gene51258	PPI
MS.gene51258	MS.gene48655	PPI
MS.gene21734	MS.gene51258	PPI
MS.gene51258	MS.gene09785	PPI
MS.gene33377	MS.gene51258	PPI
MS.gene008767	MS.gene51258	PPI
MS.gene71204	MS.gene51258	PPI
MS.gene007486	MS.gene51258	PPI
MS.gene041770	MS.gene51258	PPI
MS.gene51258	MS.gene027072	PPI
MS.gene51258	MS.gene65463	PPI
MS.gene51258	MS.gene007485	PPI
MS.gene26672	MS.gene51258	PPI
MS.gene97379	MS.gene51258	PPI
MS.gene99554	MS.gene51258	PPI
MS.gene050456	MS.gene51258	PPI
MS.gene058128	MS.gene51258	PPI
MS.gene99588	MS.gene51258	PPI
MS.gene51258	MS.gene23196	PPI
MS.gene066501	MS.gene51258	PPI
MS.gene25244	MS.gene51258	PPI
MS.gene51258	MS.gene067705	PPI
MS.gene08470	MS.gene51258	PPI
MS.gene63085	MS.gene51258	PPI
MS.gene056455	MS.gene51258	PPI
MS.gene89986	MS.gene51258	PPI
MS.gene26019	MS.gene51258	PPI
MS.gene51258	MS.gene99973	PPI
MS.gene035805	MS.gene51258	PPI
MS.gene51258	MS.gene30174	PPI
MS.gene51258	MS.gene26021	PPI
MS.gene69965	MS.gene51258	PPI
MS.gene066500	MS.gene51258	PPI
MS.gene82740	MS.gene51258	PPI
MS.gene51258	MS.gene91775	PPI
MS.gene30172	MS.gene51258	PPI
MS.gene045937	MS.gene51258	PPI
MS.gene23852	MS.gene51258	PPI
MS.gene69966	MS.gene51258	PPI
MS.gene97943	MS.gene51258	PPI
MS.gene071113	MS.gene51258	PPI
MS.gene027071	MS.gene51258	PPI
MS.gene67157	MS.gene51258	PPI
MS.gene51258	MS.gene037184	PPI
MS.gene30433	MS.gene51258	PPI
MS.gene012203	MS.gene51258	PPI
MS.gene022109	MS.gene51258	PPI
MS.gene34651	MS.gene51258	PPI
MS.gene90400	MS.gene51258	PPI
MS.gene51258	MS.gene54764	PPI
MS.gene010910	MS.gene51258	PPI
MS.gene51258	MS.gene038519	PPI
MS.gene025229	MS.gene51258	PPI
MS.gene063222	MS.gene51258	PPI
MS.gene25515	MS.gene51258	PPI
MS.gene07706	MS.gene51258	PPI
MS.gene027074	MS.gene51258	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51258.t1	MTR_8g039620	65.903	349	99	4	1	330	1	348	1.12e-158	451
MS.gene51258.t1	MTR_3g016210	64.624	359	95	5	1	330	1	356	3.52e-157	447
MS.gene51258.t1	MTR_8g072510	65.116	344	103	4	1	330	1	341	1.83e-152	436
MS.gene51258.t1	MTR_7g021090	64.535	344	99	5	1	330	1	335	4.90e-150	428
MS.gene51258.t1	MTR_1g059930	62.248	347	111	5	1	330	1	344	1.77e-143	412
MS.gene51258.t1	MTR_8g062410	64.431	343	97	4	3	330	4	336	4.28e-143	412
MS.gene51258.t1	MTR_8g073260	59.942	342	120	5	1	330	4	340	1.34e-140	405
MS.gene51258.t1	MTR_7g451420	63.323	319	101	3	1	306	1	316	9.17e-136	388
MS.gene51258.t1	MTR_8g069880	61.493	335	113	3	9	330	7	338	2.34e-134	390
MS.gene51258.t1	MTR_8g068990	58.430	344	108	6	4	330	7	332	3.53e-131	382
MS.gene51258.t1	MTR_8g467780	56.196	347	127	4	7	330	9	353	1.59e-124	365
MS.gene51258.t1	MTR_8g066670	59.942	342	119	3	1	328	1067	1404	8.99e-123	385
MS.gene51258.t1	MTR_8g040930	60.811	296	91	5	52	328	2	291	7.96e-117	342
MS.gene51258.t1	MTR_8g041240	60.811	296	91	5	52	328	2	291	7.96e-117	342
MS.gene51258.t1	MTR_3g105650	49.521	313	134	4	7	299	3	311	6.13e-100	301
MS.gene51258.t1	MTR_8g073275	42.857	350	125	9	52	330	2	347	2.50e-71	228
MS.gene51258.t1	MTR_1g069110	27.273	319	201	8	9	314	18	318	7.59e-29	115
MS.gene51258.t1	MTR_7g099580	26.073	303	183	7	7	304	10	276	2.03e-24	102
MS.gene51258.t1	MTR_7g099570	27.305	282	156	7	2	275	8	248	4.05e-19	88.6
MS.gene51258.t1	MTR_1g115575	25.749	334	176	10	12	299	138	445	7.62e-16	78.6
MS.gene51258.t1	MTR_2g101320	28.804	184	117	2	37	218	134	305	1.21e-13	72.0
MS.gene51258.t1	MTR_7g117620	23.958	288	173	7	44	298	119	393	1.84e-13	71.2
MS.gene51258.t1	MTR_4g062100	22.013	318	190	7	2	298	104	384	1.14e-11	65.9
MS.gene51258.t1	MTR_2g096190	20.792	303	212	5	2	298	100	380	5.64e-11	63.9
MS.gene51258.t1	MTR_2g101310	26.816	179	121	2	40	218	137	305	7.82e-11	63.5
MS.gene51258.t1	MTR_2g101310	26.816	179	121	2	40	218	137	305	9.93e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51258.t1	AT4G10720	40.062	322	171	5	8	309	4	323	1.64e-74	235
MS.gene51258.t1	AT4G10720	40.062	322	171	5	8	309	4	323	7.09e-74	235
MS.gene51258.t1	AT5G15500	37.798	336	187	5	5	320	2	335	3.78e-71	228
MS.gene51258.t1	AT5G54620	40.129	309	164	4	7	296	3	309	3.76e-68	219
MS.gene51258.t1	AT1G14480	36.310	336	189	4	8	320	4	337	2.82e-66	215
MS.gene51258.t1	AT1G14500	36.111	324	184	3	8	310	4	325	1.76e-63	207
MS.gene51258.t1	AT5G54610	36.513	304	170	5	8	292	4	303	4.51e-62	204
MS.gene51258.t1	AT1G14480	34.056	323	171	4	8	320	4	294	6.31e-52	176
MS.gene51258.t1	AT5G15500	33.333	231	132	5	110	320	1	229	1.58e-31	121
MS.gene51258.t1	AT5G51160	29.323	266	148	7	69	302	41	298	3.51e-26	108
MS.gene51258.t1	AT3G12360	26.190	294	162	8	44	299	167	443	1.89e-15	77.4
MS.gene51258.t1	AT3G12360	26.190	294	162	8	44	299	155	431	2.24e-15	77.4
MS.gene51258.t1	AT4G03500	26.587	252	137	7	71	299	276	502	2.53e-15	77.4
MS.gene51258.t1	AT4G03500	26.587	252	137	7	71	299	253	479	2.70e-15	77.0
MS.gene51258.t1	AT4G03500	26.587	252	137	7	71	299	253	479	2.70e-15	77.0
MS.gene51258.t1	AT3G09550	26.667	330	178	12	12	299	157	464	3.08e-15	77.0
MS.gene51258.t1	AT3G09550	26.667	330	178	12	12	299	150	457	3.09e-15	77.0
MS.gene51258.t1	AT3G09550	26.667	330	178	12	12	299	150	457	3.09e-15	77.0
MS.gene51258.t1	AT5G54700	25.614	285	151	10	24	306	20	245	5.02e-15	76.3
MS.gene51258.t1	AT1G10340	24.907	269	146	6	79	302	175	432	6.91e-15	75.9
MS.gene51258.t1	AT1G10340	24.907	269	146	6	79	302	171	428	6.94e-15	75.9
MS.gene51258.t1	AT1G34050	24.031	258	164	7	67	302	176	423	7.06e-15	75.9
MS.gene51258.t1	AT5G54700	28.638	213	120	8	100	306	22	208	1.01e-14	74.3
MS.gene51258.t1	AT4G03460	28.436	211	122	5	102	299	292	486	1.59e-12	68.6
MS.gene51258.t1	AT4G03460	27.358	212	123	5	102	299	260	454	1.85e-12	68.6
MS.gene51258.t1	AT2G01680	21.449	345	212	8	14	312	57	388	2.80e-11	64.7
MS.gene51258.t1	AT5G02620	23.708	329	197	9	9	298	60	373	5.93e-11	63.9
MS.gene51258.t1	AT5G02620	23.708	329	197	9	9	298	60	373	5.93e-11	63.9
MS.gene51258.t1	AT5G02620	23.708	329	197	9	9	298	60	373	5.93e-11	63.9
MS.gene51258.t1	AT5G54710	25.670	261	147	8	79	302	201	451	6.33e-11	63.9
MS.gene51258.t1	AT2G24600	29.496	139	89	2	79	216	175	305	6.85e-11	63.5
MS.gene51258.t1	AT2G24600	29.496	139	89	2	79	216	175	305	6.85e-11	63.5
MS.gene51258.t1	AT5G54710	25.670	261	147	8	79	302	246	496	7.05e-11	63.5
MS.gene51258.t1	AT2G24600	29.496	139	89	2	79	216	175	305	9.79e-11	63.2
MS.gene51258.t1	AT2G24600	29.496	139	89	2	79	216	175	305	9.79e-11	63.2

Find 50 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGGCCCTTCAAGTACTTCT+TGG	0.237371	6.3:+76662569	MS.gene51258:CDS
TCATAATTTCAGTAGCAAAT+TGG	0.281833	6.3:-76662262	None:intergenic
CTGAAAGCTGCAGCTGAATC+AGG	0.329052	6.3:+76662125	MS.gene51258:CDS
ACGGATTTCCCAGCATTTCC+TGG	0.345494	6.3:-76663679	None:intergenic
CTTTGCACATCGCTGCATCT+AGG	0.375293	6.3:+76662231	MS.gene51258:CDS
GGGACTCACTATTGATTGAT+AGG	0.376538	6.3:-76663581	None:intergenic
CTCAAGCATTCAATGGATTC+CGG	0.412196	6.3:-76662497	None:intergenic
CCCTTCAAGTACTTCTTGGT+TGG	0.412618	6.3:+76662573	MS.gene51258:CDS
TTTGCACATCGCTGCATCTA+GGG	0.428177	6.3:+76662232	MS.gene51258:CDS
AAGCTTTCTCTTTGCTTGTC+CGG	0.429085	6.3:+76662478	MS.gene51258:CDS
TCTCACACTCAAGCATTCAA+TGG	0.429504	6.3:-76662504	None:intergenic
ATTATTACCCCAGGAAATGC+TGG	0.431985	6.3:+76663670	MS.gene51258:CDS
TGCAAAGGAGTTTCAACAAA+TGG	0.447385	6.3:-76662215	None:intergenic
CTTTAGAAGAAATATATTAG+AGG	0.452706	6.3:+76663510	MS.gene51258:CDS
CGGATTTCCCAGCATTTCCT+GGG	0.461411	6.3:-76663678	None:intergenic
TGTCAAGAATGAAAAGTTCC+AGG	0.462154	6.3:+76662550	MS.gene51258:CDS
GGTAATAATAGTAGAATTTG+AGG	0.463196	6.3:-76663656	None:intergenic
AAGAAAATATTATTAAATGT+TGG	0.492021	6.3:+76663382	MS.gene51258:CDS
CGAGAGAGGTGCAAAAGAGC+TGG	0.502941	6.3:+76662610	MS.gene51258:CDS
AGCATTAATAAGTGAACCAC+AGG	0.518202	6.3:+76662691	MS.gene51258:CDS
TCAAACATGAACACATATGA+TGG	0.521073	6.3:+76662095	None:intergenic
TCTTGGAAGCTAAATGCTGA+AGG	0.524800	6.3:+76662302	MS.gene51258:CDS
ATCCATCTTGCTATGCAAAA+CGG	0.531789	6.3:+76662335	MS.gene51258:CDS
AAAGAACTTGTTAAAGTGCA+AGG	0.532557	6.3:+76662395	MS.gene51258:CDS
GCCAACCAAGAAGTACTTGA+AGG	0.535702	6.3:-76662574	None:intergenic
CTCAAAACAAATTGCGAGAG+AGG	0.539413	6.3:+76662596	MS.gene51258:CDS
GTTAAAGTGCAAGGAAGAGA+AGG	0.540804	6.3:+76662404	MS.gene51258:CDS
ATTTGACTTGCAAAATGAAG+AGG	0.542519	6.3:-76662434	None:intergenic
GCAAAACGGTCAAACAATGA+TGG	0.544713	6.3:+76662349	MS.gene51258:CDS
GTATCACTGACTTCTGAGGC+AGG	0.546924	6.3:-76663412	None:intergenic
CAAGAAGTACTTGAAGGGCC+TGG	0.547051	6.3:-76662568	None:intergenic
TTAGACATTGCAACTACAGC+AGG	0.553641	6.3:+76663355	MS.gene51258:CDS
AATTCTACTATTATTACCCC+AGG	0.568581	6.3:+76663661	MS.gene51258:CDS
CTAAATCAGAAGGATGAGGC+AGG	0.569601	6.3:+76662644	MS.gene51258:CDS
TTAGCCTGATAAACTCCACC+AGG	0.571244	6.3:-76663604	None:intergenic
TAGAGGAGCAACGTAACACT+TGG	0.572878	6.3:+76663527	MS.gene51258:CDS
TTTGCATAGCAAGATGGATG+GGG	0.573527	6.3:-76662331	None:intergenic
TCTTAGTCTATCTGCAAGTG+TGG	0.575281	6.3:-76663437	None:intergenic
AAACAAAATACTAAATCAGA+AGG	0.579530	6.3:+76662634	MS.gene51258:CDS
AATACTAAATCAGAAGGATG+AGG	0.585811	6.3:+76662640	MS.gene51258:CDS
TTGCACATCGCTGCATCTAG+GGG	0.586343	6.3:+76662233	MS.gene51258:CDS
TTATTACCCCAGGAAATGCT+GGG	0.603046	6.3:+76663671	MS.gene51258:CDS
CTAGATGCAGCGATGTGCAA+AGG	0.614402	6.3:-76662230	None:intergenic
CTTAGTCTATCTGCAAGTGT+GGG	0.615195	6.3:-76663436	None:intergenic
CCAACCAAGAAGTACTTGAA+GGG	0.638063	6.3:-76662573	None:intergenic
GGGAGTATCACTGACTTCTG+AGG	0.643167	6.3:-76663416	None:intergenic
GGATTTCCCAGCATTTCCTG+GGG	0.671158	6.3:-76663677	None:intergenic
TAGCCTGATAAACTCCACCA+GGG	0.689510	6.3:-76663603	None:intergenic
AGCCTGATAAACTCCACCAG+GGG	0.703709	6.3:-76663602	None:intergenic
GCCTGATAAACTCCACCAGG+GGG	0.703826	6.3:-76663601	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAGAAAATATTATTAAATGT+TGG	+	chr6.3:76663382-76663401	MS.gene51258:CDS	10.0%
!!!	AATAAATGGTATTTTTTATT+TGG	+	chr6.3:76663261-76663280	MS.gene51258:intron	10.0%
!!	AAACAAAAGGAAATCATATT+CGG	-	chr6.3:76663739-76663758	None:intergenic	20.0%
!!	AAACAAAATACTAAATCAGA+AGG	+	chr6.3:76662634-76662653	MS.gene51258:CDS	20.0%
!!	AAAGACTTGTATAAATTTGA+AGG	+	chr6.3:76663306-76663325	MS.gene51258:intron	20.0%
!!	AGAAATATATAAAGAAGACA+TGG	-	chr6.3:76662742-76662761	None:intergenic	20.0%
!!	TGCTATAATTGATAAACAAA+AGG	-	chr6.3:76663752-76663771	None:intergenic	20.0%
!!!	CTTTAGAAGAAATATATTAG+AGG	+	chr6.3:76663510-76663529	MS.gene51258:CDS	20.0%
!	AAATGTGTGACACTTAATAT+AGG	+	chr6.3:76663205-76663224	MS.gene51258:intron	25.0%
!	AAATTTGAAGGCAAAAAACT+TGG	+	chr6.3:76663318-76663337	MS.gene51258:intron	25.0%
!	AATAGTACATTGAAAATACG+TGG	+	chr6.3:76663121-76663140	MS.gene51258:intron	25.0%
!	AATTGGAAAATAACACATCA+AGG	+	chr6.3:76662776-76662795	MS.gene51258:intron	25.0%
!	GAGTTGAAAAAATAAGGAAT+TGG	-	chr6.3:76663717-76663736	None:intergenic	25.0%
!	GGTAATAATAGTAGAATTTG+AGG	-	chr6.3:76663659-76663678	None:intergenic	25.0%
!	TATTCGGAGTTGAAAAAATA+AGG	-	chr6.3:76663723-76663742	None:intergenic	25.0%
!	TCATAATTTCAGTAGCAAAT+TGG	-	chr6.3:76662265-76662284	None:intergenic	25.0%
!	TCTATATGCTCAAAAATAGA+TGG	-	chr6.3:76662188-76662207	None:intergenic	25.0%
!	TTTAGTCACTAAATTCCAAA+TGG	+	chr6.3:76662840-76662859	MS.gene51258:intron	25.0%
!!	GCTAATTCTTTACTTTAAAG+TGG	-	chr6.3:76662874-76662893	None:intergenic	25.0%
!!	TGTTGAAACTTTCATTTTCT+TGG	+	chr6.3:76662285-76662304	MS.gene51258:CDS	25.0%
!!	TTTTGTTACAAAATACAACG+TGG	+	chr6.3:76663154-76663173	MS.gene51258:intron	25.0%
!!!	ATGTGTTATTTTCCAATTGA+GGG	-	chr6.3:76662774-76662793	None:intergenic	25.0%
	AAACACTTTGTAAATGACTC+TGG	+	chr6.3:76662803-76662822	MS.gene51258:intron	30.0%
	AATACTAAATCAGAAGGATG+AGG	+	chr6.3:76662640-76662659	MS.gene51258:CDS	30.0%
	AATTCTACTATTATTACCCC+AGG	+	chr6.3:76663661-76663680	MS.gene51258:CDS	30.0%
	CATGAACGTTCTCTAATAAA+TGG	+	chr6.3:76663247-76663266	MS.gene51258:intron	30.0%
	GTGACACTTAATATAGGATA+GGG	+	chr6.3:76663211-76663230	MS.gene51258:intron	30.0%
	TGACACTTAATATAGGATAG+GGG	+	chr6.3:76663212-76663231	MS.gene51258:intron	30.0%
	TGTGACACTTAATATAGGAT+AGG	+	chr6.3:76663210-76663229	MS.gene51258:intron	30.0%
!	CTTCATTTTGCAAGTCAAAT+TGG	+	chr6.3:76662437-76662456	MS.gene51258:CDS	30.0%
!!	AAAGAACTTGTTAAAGTGCA+AGG	+	chr6.3:76662395-76662414	MS.gene51258:CDS	30.0%
!!	ATTTGACTTGCAAAATGAAG+AGG	-	chr6.3:76662437-76662456	None:intergenic	30.0%
!!!	GATGTGTTATTTTCCAATTG+AGG	-	chr6.3:76662775-76662794	None:intergenic	30.0%
!!!	TGTGTTATTTTCCAATTGAG+GGG	-	chr6.3:76662773-76662792	None:intergenic	30.0%
	AGCATTAATAAGTGAACCAC+AGG	+	chr6.3:76662691-76662710	MS.gene51258:CDS	35.0%
	GACACTTAATATAGGATAGG+GGG	+	chr6.3:76663213-76663232	MS.gene51258:intron	35.0%
	TGCAAAGGAGTTTCAACAAA+TGG	-	chr6.3:76662218-76662237	None:intergenic	35.0%
	TGTCAAGAATGAAAAGTTCC+AGG	+	chr6.3:76662550-76662569	MS.gene51258:CDS	35.0%
!	ATCCATCTTGCTATGCAAAA+CGG	+	chr6.3:76662335-76662354	MS.gene51258:CDS	35.0%
!	TGTCACATTTTCATCTATCG+TGG	-	chr6.3:76663476-76663495	None:intergenic	35.0%
!	TTTTGCAAGTCAAATTGGTG+AGG	+	chr6.3:76662442-76662461	MS.gene51258:CDS	35.0%
!	TTTTGCATAGCAAGATGGAT+GGG	-	chr6.3:76662335-76662354	None:intergenic	35.0%
!!!	TCTTTTGTTTTCCCCTCAAT+TGG	+	chr6.3:76662759-76662778	MS.gene51258:intron	35.0%
	AAAGTGGTGTGCATTCCATT+TGG	-	chr6.3:76662858-76662877	None:intergenic	40.0%
	AAGCTTTCTCTTTGCTTGTC+CGG	+	chr6.3:76662478-76662497	MS.gene51258:CDS	40.0%
	ATTATTACCCCAGGAAATGC+TGG	+	chr6.3:76663670-76663689	MS.gene51258:CDS	40.0%
	CTCAAAACAAATTGCGAGAG+AGG	+	chr6.3:76662596-76662615	MS.gene51258:CDS	40.0%
	CTTAGTCTATCTGCAAGTGT+GGG	-	chr6.3:76663439-76663458	None:intergenic	40.0%
	GAATCTAATGTCATTGCACG+AGG	-	chr6.3:76662720-76662739	None:intergenic	40.0%
	GCAAAACGGTCAAACAATGA+TGG	+	chr6.3:76662349-76662368	MS.gene51258:CDS	40.0%
	GTTAAAGTGCAAGGAAGAGA+AGG	+	chr6.3:76662404-76662423	MS.gene51258:CDS	40.0%
	TCTCACACTCAAGCATTCAA+TGG	-	chr6.3:76662507-76662526	None:intergenic	40.0%
	TCTTAGTCTATCTGCAAGTG+TGG	-	chr6.3:76663440-76663459	None:intergenic	40.0%
	TCTTGGAAGCTAAATGCTGA+AGG	+	chr6.3:76662302-76662321	MS.gene51258:CDS	40.0%
	TTAGACATTGCAACTACAGC+AGG	+	chr6.3:76663355-76663374	MS.gene51258:CDS	40.0%
	TTATTACCCCAGGAAATGCT+GGG	+	chr6.3:76663671-76663690	MS.gene51258:CDS	40.0%
	TTTGCATAGCAAGATGGATG+GGG	-	chr6.3:76662334-76662353	None:intergenic	40.0%
!	ATAGTTTGTCTAACCCCAAC+TGG	+	chr6.3:76663772-76663791	MS.gene51258:intron	40.0%
!	CTCAAGCATTCAATGGATTC+CGG	-	chr6.3:76662500-76662519	None:intergenic	40.0%
!	GAATTGGCGTGTTGACAATA+CGG	-	chr6.3:76663701-76663720	None:intergenic	40.0%
!	GGGACTCACTATTGATTGAT+AGG	-	chr6.3:76663584-76663603	None:intergenic	40.0%
!	GTTTTGCATAGCAAGATGGA+TGG	-	chr6.3:76662336-76662355	None:intergenic	40.0%
!	TAGTTTGTCTAACCCCAACT+GGG	+	chr6.3:76663773-76663792	MS.gene51258:intron	40.0%
!!	CCAACCAAGAAGTACTTGAA+GGG	-	chr6.3:76662576-76662595	None:intergenic	40.0%
	CCCTTCAAGTACTTCTTGGT+TGG	+	chr6.3:76662573-76662592	MS.gene51258:CDS	45.0%
	CTAAATCAGAAGGATGAGGC+AGG	+	chr6.3:76662644-76662663	MS.gene51258:CDS	45.0%
	CTAACCCCAACTGGGATAAT+AGG	+	chr6.3:76663781-76663800	MS.gene51258:intron	45.0%
	GGTAGCATAGACTCGATTGT+TGG	+	chr6.3:76663282-76663301	MS.gene51258:intron	45.0%
	TAGAGGAGCAACGTAACACT+TGG	+	chr6.3:76663527-76663546	MS.gene51258:CDS	45.0%
	TAGCCTGATAAACTCCACCA+GGG	-	chr6.3:76663606-76663625	None:intergenic	45.0%
	TTAGCCTGATAAACTCCACC+AGG	-	chr6.3:76663607-76663626	None:intergenic	45.0%
	TTTGCACATCGCTGCATCTA+GGG	+	chr6.3:76662232-76662251	MS.gene51258:CDS	45.0%
!	GACCGTTTTGCATAGCAAGA+TGG	-	chr6.3:76662340-76662359	None:intergenic	45.0%
!!	GCCAACCAAGAAGTACTTGA+AGG	-	chr6.3:76662577-76662596	None:intergenic	45.0%
	ACCCCAACTGGGATAATAGG+CGG	+	chr6.3:76663784-76663803	MS.gene51258:intron	50.0%
	ACCGCCTATTATCCCAGTTG+GGG	-	chr6.3:76663788-76663807	None:intergenic	50.0%
	ACGGATTTCCCAGCATTTCC+TGG	-	chr6.3:76663682-76663701	None:intergenic	50.0%
	AGACCGCCTATTATCCCAGT+TGG	-	chr6.3:76663790-76663809	None:intergenic	50.0%
	AGCCTGATAAACTCCACCAG+GGG	-	chr6.3:76663605-76663624	None:intergenic	50.0%
	CAATCAATAGTGAGTCCCCC+TGG	+	chr6.3:76663586-76663605	MS.gene51258:CDS	50.0%
	CAGGCCCTTCAAGTACTTCT+TGG	+	chr6.3:76662569-76662588	MS.gene51258:CDS	50.0%
	CGGATTTCCCAGCATTTCCT+GGG	-	chr6.3:76663681-76663700	None:intergenic	50.0%
	CTAGATGCAGCGATGTGCAA+AGG	-	chr6.3:76662233-76662252	None:intergenic	50.0%
	CTGAAAGCTGCAGCTGAATC+AGG	+	chr6.3:76662125-76662144	MS.gene51258:CDS	50.0%
	CTTTGCACATCGCTGCATCT+AGG	+	chr6.3:76662231-76662250	MS.gene51258:CDS	50.0%
	GACCGCCTATTATCCCAGTT+GGG	-	chr6.3:76663789-76663808	None:intergenic	50.0%
	GGATTTCCCAGCATTTCCTG+GGG	-	chr6.3:76663680-76663699	None:intergenic	50.0%
	TCATTGCACGAGGTTACCTG+TGG	-	chr6.3:76662710-76662729	None:intergenic	50.0%
	TTGCACATCGCTGCATCTAG+GGG	+	chr6.3:76662233-76662252	MS.gene51258:CDS	50.0%
!!	CAAGAAGTACTTGAAGGGCC+TGG	-	chr6.3:76662571-76662590	None:intergenic	50.0%
!!	GGGAGTATCACTGACTTCTG+AGG	-	chr6.3:76663419-76663438	None:intergenic	50.0%
!!	GTATCACTGACTTCTGAGGC+AGG	-	chr6.3:76663415-76663434	None:intergenic	50.0%
	GCCTGATAAACTCCACCAGG+GGG	-	chr6.3:76663604-76663623	None:intergenic	55.0%
	TCAATAGTGAGTCCCCCTGG+TGG	+	chr6.3:76663589-76663608	MS.gene51258:CDS	55.0%
	TCCCCCTGGTGGAGTTTATC+AGG	+	chr6.3:76663600-76663619	MS.gene51258:CDS	55.0%
!	CGAGAGAGGTGCAAAAGAGC+TGG	+	chr6.3:76662610-76662629	MS.gene51258:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	76662101	76663814	76662101	ID=MS.gene51258
chr6.3	mRNA	76662101	76663814	76662101	ID=MS.gene51258.t1;Parent=MS.gene51258
chr6.3	exon	76662101	76662712	76662101	ID=MS.gene51258.t1.exon1;Parent=MS.gene51258.t1
chr6.3	CDS	76662101	76662712	76662101	ID=cds.MS.gene51258.t1;Parent=MS.gene51258.t1
chr6.3	exon	76663328	76663699	76663328	ID=MS.gene51258.t1.exon2;Parent=MS.gene51258.t1
chr6.3	CDS	76663328	76663699	76663328	ID=cds.MS.gene51258.t1;Parent=MS.gene51258.t1
chr6.3	exon	76663803	76663814	76663803	ID=MS.gene51258.t1.exon3;Parent=MS.gene51258.t1
chr6.3	CDS	76663803	76663814	76663803	ID=cds.MS.gene51258.t1;Parent=MS.gene51258.t1

Gene Sequence

>MS.gene51258

ATGAACACATATGATGGTGAGCAGCTGAAAGCTGCAGCTGAATCAGGTGATATAAATCTTCTCTACACTGTAATTCGAAATGATCCATCTATTTTTGAGCATATAGATTTGATACCATTTGTTGAAACTCCTTTGCACATCGCTGCATCTAGGGGTCATCTCCAATTTGCTACTGAAATTATGATGTTGAAACTTTCATTTTCTTGGAAGCTAAATGCTGAAGGATTCAGCCCCATCCATCTTGCTATGCAAAACGGTCAAACAATGATGGTATCTCGCTTTGTTAACATTAATAAAGAACTTGTTAAAGTGCAAGGAAGAGAAGGATTAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAGGTTGATCTTTTAGCAAGCTTTCTCTTTGCTTGTCCGGAATCCATTGAATGCTTGAGTGTGAGACAAGAGACTGCACTGCATGTTGCTGTCAAGAATGAAAAGTTCCAGGCCCTTCAAGTACTTCTTGGTTGGCTCAAAACAAATTGCGAGAGAGGTGCAAAAGAGCTGGAAAACAAAATACTAAATCAGAAGGATGAGGCAGGCAATACTATTTTGCACATTTCAGCAGCATTAATAAGTGAACCACAGGTAACCTCGTGCAATGACATTAGATTCCATGTCTTCTTTATATATTTCTTTTGTTTTCCCCTCAATTGGAAAATAACACATCAAGGAAAAAAACACTTTGTAAATGACTCTGGTGTTTTTTATTATTTTTAGTCACTAAATTCCAAATGGAATGCACACCACTTTAAAGTAAAGAATTAGCATGCAAAGAAAAGCACTAGTTTTGATTTTATTTTTTTTTTGCATAAAGATGAAGAAAAGTTGTAAATATGTTTTGTAGTAATATAATTCATTTCAACGTCTTTAAAAAAAAATTGTAAATAAATAAATATTTTAATATGTTAATAAAAAATTTCTTTAGTCATTATCATAAATGTATAGCTTAGTAAAATTTACTTGAGTTTGACATTAATATTAAATTAAATAACTAATAGTACATTGAAAATACGTGGTACTTTTTTTTTTTGTTACAAAATACAACGTGGTACTTATTTTGTGATATTTTTCTTTTGCAAATGTGTGACACTTAATATAGGATAGGGGGATTAGTTGTAACATGAACGTTCTCTAATAAATGGTATTTTTTATTTGGTAGCATAGACTCGATTGTTGGTAAAGACTTGTATAAATTTGAAGGCAAAAAACTTGGAGAACAAAACAGCATTAGACATTGCAACTACAGCAGGAATCAAGAAAATATTATTAAATGTTGGAGCGAAACCTGCCTCAGAAGTCAGTGATACTCCCACACTTGCAGATAGACTAAGATTAAGATCAAACACCACGATAGATGAAAATGTGACAATTTTTATGAGTCGCTTTAGAAGAAATATATTAGAGGAGCAACGTAACACTTGGTTGATAATTGCGACTCTTGTTGCGACTGCAACCTATCAATCAATAGTGAGTCCCCCTGGTGGAGTTTATCAGGCTAATGCTAGTGACAATACTGTGAACATCACTTCCTCAAATTCTACTATTATTACCCCAGGAAATGCTGGGAAATCCGTATTGTCAACACGCCAATTCCTTATTTTTTCAACTCCGAATATGATTTCCTTTTGTTTATCAATTATAGCAATAGTTTGTCTAACCCCAACTGGGATAATAGGCGGTCTATTAG

Protein sequence

>MS.gene51258.t1

MNTYDGEQLKAAAESGDINLLYTVIRNDPSIFEHIDLIPFVETPLHIAASRGHLQFATEIMMLKLSFSWKLNAEGFSPIHLAMQNGQTMMVSRFVNINKELVKVQGREGLTPLHFASQIGEVDLLASFLFACPESIECLSVRQETALHVAVKNEKFQALQVLLGWLKTNCERGAKELENKILNQKDEAGNTILHISAALISEPQAKNLENKTALDIATTAGIKKILLNVGAKPASEVSDTPTLADRLRLRSNTTIDENVTIFMSRFRRNILEEQRNTWLIIATLVATATYQSIVSPPGGVYQANASDNTVNITSSNSTIITPGNAGKSAVY