Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85534.t1 | XP_003598604.2 | 83 | 377 | 46 | 1 | 1 | 359 | 1 | 377 | 3.00E-152 | 548.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85534.t1 | Q8GYH5 | 43.2 | 303 | 156 | 4 | 9 | 297 | 4 | 304 | 3.3e-22 | 107.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85534.t1 | G7IYT6 | 83.0 | 377 | 46 | 1 | 1 | 359 | 1 | 377 | 2.2e-152 | 548.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85534.t1 | MTR_3g016210 | 91.777 | 377 | 13 | 1 | 1 | 359 | 1 | 377 | 0.0 | 702 |
MS.gene85534.t1 | MTR_8g072510 | 69.399 | 366 | 101 | 2 | 1 | 359 | 1 | 362 | 7.32e-177 | 499 |
MS.gene85534.t1 | MTR_8g062410 | 65.761 | 368 | 106 | 5 | 1 | 359 | 1 | 357 | 8.70e-165 | 468 |
MS.gene85534.t1 | MTR_8g039620 | 66.848 | 368 | 108 | 4 | 2 | 359 | 6 | 369 | 1.12e-164 | 468 |
MS.gene85534.t1 | MTR_1g059930 | 67.797 | 354 | 104 | 2 | 8 | 354 | 10 | 360 | 1.98e-160 | 457 |
MS.gene85534.t1 | MTR_7g021090 | 62.740 | 365 | 118 | 4 | 3 | 359 | 2 | 356 | 3.02e-157 | 447 |
MS.gene85534.t1 | MTR_8g073260 | 61.281 | 359 | 123 | 4 | 1 | 351 | 1 | 351 | 1.31e-153 | 440 |
MS.gene85534.t1 | MTR_8g068990 | 60.218 | 367 | 116 | 5 | 2 | 357 | 4 | 351 | 5.10e-147 | 423 |
MS.gene85534.t1 | MTR_7g451420 | 66.238 | 311 | 98 | 1 | 3 | 306 | 2 | 312 | 1.19e-144 | 412 |
MS.gene85534.t1 | MTR_8g069880 | 60.556 | 360 | 129 | 3 | 6 | 357 | 3 | 357 | 2.76e-141 | 409 |
MS.gene85534.t1 | MTR_8g066670 | 62.670 | 367 | 123 | 4 | 1 | 359 | 1067 | 1427 | 5.89e-139 | 430 |
MS.gene85534.t1 | MTR_8g467780 | 57.105 | 373 | 140 | 3 | 9 | 364 | 10 | 379 | 2.28e-133 | 389 |
MS.gene85534.t1 | MTR_8g040930 | 62.025 | 316 | 106 | 2 | 52 | 357 | 1 | 312 | 5.45e-133 | 385 |
MS.gene85534.t1 | MTR_8g041240 | 62.025 | 316 | 106 | 2 | 52 | 357 | 1 | 312 | 5.45e-133 | 385 |
MS.gene85534.t1 | MTR_3g105650 | 49.355 | 310 | 142 | 3 | 8 | 303 | 3 | 311 | 7.77e-100 | 302 |
MS.gene85534.t1 | MTR_8g073275 | 43.536 | 379 | 134 | 7 | 52 | 360 | 1 | 369 | 1.67e-85 | 266 |
MS.gene85534.t1 | MTR_1g069110 | 28.297 | 364 | 201 | 9 | 17 | 357 | 25 | 351 | 1.74e-29 | 118 |
MS.gene85534.t1 | MTR_7g099580 | 26.351 | 296 | 174 | 6 | 22 | 312 | 24 | 280 | 9.85e-28 | 111 |
MS.gene85534.t1 | MTR_7g099570 | 29.319 | 191 | 121 | 3 | 13 | 198 | 12 | 193 | 3.67e-19 | 89.4 |
MS.gene85534.t1 | MTR_7g117620 | 26.370 | 292 | 164 | 7 | 45 | 302 | 119 | 393 | 3.71e-17 | 83.2 |
MS.gene85534.t1 | MTR_2g101320 | 26.852 | 216 | 133 | 4 | 38 | 238 | 134 | 339 | 5.67e-16 | 79.7 |
MS.gene85534.t1 | MTR_4g062100 | 22.222 | 306 | 213 | 6 | 1 | 302 | 100 | 384 | 5.54e-15 | 76.6 |
MS.gene85534.t1 | MTR_1g115575 | 25.939 | 293 | 167 | 9 | 45 | 303 | 169 | 445 | 1.17e-14 | 75.5 |
MS.gene85534.t1 | MTR_1g032100 | 23.867 | 331 | 195 | 9 | 10 | 302 | 60 | 371 | 1.76e-14 | 75.1 |
MS.gene85534.t1 | MTR_5g085500 | 29.012 | 162 | 96 | 4 | 72 | 222 | 1 | 154 | 1.43e-12 | 68.9 |
MS.gene85534.t1 | MTR_2g101310 | 26.471 | 238 | 140 | 7 | 41 | 253 | 137 | 364 | 1.60e-12 | 68.9 |
MS.gene85534.t1 | MTR_2g096190 | 25.882 | 170 | 124 | 1 | 1 | 170 | 96 | 263 | 2.03e-12 | 68.6 |
MS.gene85534.t1 | MTR_2g101310 | 26.471 | 238 | 140 | 7 | 41 | 253 | 137 | 364 | 4.38e-12 | 67.4 |
MS.gene85534.t1 | MTR_8g105260 | 22.414 | 290 | 181 | 5 | 45 | 302 | 101 | 378 | 4.44e-12 | 67.8 |
MS.gene85534.t1 | MTR_5g085830 | 22.485 | 338 | 207 | 9 | 10 | 302 | 247 | 574 | 8.37e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85534.t1 | AT4G10720 | 40.356 | 337 | 184 | 3 | 9 | 330 | 4 | 338 | 3.89e-83 | 259 |
MS.gene85534.t1 | AT4G10720 | 38.504 | 361 | 191 | 3 | 9 | 354 | 4 | 348 | 2.19e-82 | 258 |
MS.gene85534.t1 | AT5G54620 | 39.869 | 306 | 170 | 4 | 9 | 300 | 4 | 309 | 2.06e-69 | 224 |
MS.gene85534.t1 | AT5G15500 | 37.166 | 374 | 201 | 8 | 10 | 364 | 6 | 364 | 2.13e-69 | 224 |
MS.gene85534.t1 | AT5G54610 | 39.274 | 303 | 168 | 4 | 9 | 297 | 4 | 304 | 4.34e-69 | 223 |
MS.gene85534.t1 | AT1G14500 | 39.490 | 314 | 174 | 4 | 9 | 306 | 4 | 317 | 7.19e-69 | 223 |
MS.gene85534.t1 | AT1G14480 | 37.462 | 331 | 187 | 4 | 9 | 319 | 4 | 334 | 1.15e-68 | 222 |
MS.gene85534.t1 | AT1G14480 | 36.913 | 298 | 162 | 4 | 9 | 306 | 4 | 275 | 1.02e-54 | 185 |
MS.gene85534.t1 | AT5G51160 | 30.030 | 333 | 186 | 11 | 58 | 357 | 31 | 349 | 8.79e-34 | 130 |
MS.gene85534.t1 | AT5G15500 | 32.601 | 273 | 150 | 8 | 111 | 364 | 1 | 258 | 8.89e-30 | 117 |
MS.gene85534.t1 | AT4G03500 | 24.289 | 387 | 176 | 12 | 10 | 303 | 140 | 502 | 9.67e-19 | 88.2 |
MS.gene85534.t1 | AT4G03500 | 24.289 | 387 | 176 | 12 | 10 | 303 | 117 | 479 | 1.09e-18 | 87.8 |
MS.gene85534.t1 | AT4G03500 | 24.289 | 387 | 176 | 12 | 10 | 303 | 117 | 479 | 1.09e-18 | 87.8 |
MS.gene85534.t1 | AT4G03460 | 29.412 | 221 | 114 | 4 | 101 | 303 | 290 | 486 | 5.65e-17 | 82.8 |
MS.gene85534.t1 | AT4G03460 | 29.412 | 221 | 114 | 4 | 101 | 303 | 258 | 454 | 5.86e-17 | 82.8 |
MS.gene85534.t1 | AT5G54700 | 25.472 | 318 | 162 | 10 | 25 | 330 | 20 | 274 | 7.62e-16 | 79.0 |
MS.gene85534.t1 | AT2G01680 | 23.188 | 345 | 200 | 8 | 45 | 357 | 97 | 408 | 9.46e-16 | 79.0 |
MS.gene85534.t1 | AT1G34050 | 25.000 | 268 | 172 | 5 | 58 | 306 | 166 | 423 | 1.23e-14 | 75.5 |
MS.gene85534.t1 | AT3G09550 | 26.364 | 330 | 182 | 12 | 13 | 303 | 150 | 457 | 1.37e-14 | 75.5 |
MS.gene85534.t1 | AT3G09550 | 26.364 | 330 | 182 | 12 | 13 | 303 | 150 | 457 | 1.37e-14 | 75.5 |
MS.gene85534.t1 | AT3G09550 | 26.364 | 330 | 182 | 12 | 13 | 303 | 157 | 464 | 1.45e-14 | 75.5 |
MS.gene85534.t1 | AT1G03670 | 25.676 | 296 | 158 | 7 | 89 | 349 | 266 | 534 | 1.73e-14 | 75.1 |
MS.gene85534.t1 | AT5G60070 | 23.701 | 308 | 207 | 8 | 2 | 302 | 104 | 390 | 4.06e-14 | 73.9 |
MS.gene85534.t1 | AT5G54700 | 25.911 | 247 | 133 | 7 | 102 | 330 | 23 | 237 | 6.90e-14 | 72.4 |
MS.gene85534.t1 | AT1G10340 | 26.557 | 305 | 172 | 9 | 46 | 306 | 136 | 432 | 9.17e-14 | 72.8 |
MS.gene85534.t1 | AT1G10340 | 27.068 | 266 | 147 | 7 | 80 | 306 | 171 | 428 | 1.35e-13 | 72.4 |
MS.gene85534.t1 | AT2G31820 | 26.214 | 309 | 166 | 13 | 45 | 314 | 227 | 512 | 5.26e-12 | 67.8 |
MS.gene85534.t1 | AT3G12360 | 24.855 | 346 | 181 | 13 | 45 | 354 | 167 | 469 | 1.09e-11 | 66.6 |
MS.gene85534.t1 | AT3G12360 | 25.850 | 294 | 166 | 11 | 45 | 303 | 155 | 431 | 1.33e-11 | 66.2 |
MS.gene85534.t1 | AT1G05640 | 26.351 | 296 | 159 | 13 | 45 | 302 | 191 | 465 | 2.32e-11 | 65.5 |
MS.gene85534.t1 | AT5G02620 | 22.936 | 327 | 205 | 9 | 10 | 302 | 60 | 373 | 3.79e-11 | 64.7 |
MS.gene85534.t1 | AT5G02620 | 22.936 | 327 | 205 | 9 | 10 | 302 | 60 | 373 | 3.79e-11 | 64.7 |
MS.gene85534.t1 | AT5G02620 | 22.936 | 327 | 205 | 9 | 10 | 302 | 60 | 373 | 3.79e-11 | 64.7 |
MS.gene85534.t1 | AT4G03470 | 24.088 | 274 | 165 | 7 | 61 | 320 | 289 | 533 | 4.42e-11 | 64.7 |
Find 73 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTACCGGGTGGAGTTTA+TGG | 0.125721 | 3.4:+11633574 | MS.gene85534:CDS |
TCAAGATGATCCATTCATTT+TGG | 0.177439 | 3.4:+11630956 | MS.gene85534:CDS |
TTTGCATATTGCTGCATCTA+TGG | 0.193758 | 3.4:+11631013 | MS.gene85534:CDS |
CCTATCAACTATCCGGAAAT+TGG | 0.221551 | 3.4:+11633671 | MS.gene85534:CDS |
TCAATTAGAGAGCCAATTTC+CGG | 0.269733 | 3.4:-11633683 | None:intergenic |
TGGAGTTTATGGGGAAATAC+TGG | 0.300069 | 3.4:+11633585 | MS.gene85534:CDS |
TCCACCAGGTGGAGTTTATC+AGG | 0.304729 | 3.4:+11633503 | MS.gene85534:CDS |
TCGCTTTGTGAACTTCAATA+AGG | 0.312953 | 3.4:+11631157 | MS.gene85534:CDS |
TCATAATCTCGGAGGCAAAT+TGG | 0.327443 | 3.4:-11631043 | None:intergenic |
CCAATTTCCGGATAGTTGAT+AGG | 0.334977 | 3.4:-11633671 | None:intergenic |
TTCTACCGGGTGGAGTTTAT+GGG | 0.343021 | 3.4:+11633575 | MS.gene85534:CDS |
CCCTTCAAGTGCTTCTCGGC+TGG | 0.361002 | 3.4:+11631354 | MS.gene85534:CDS |
AACATGAATAGCACAAATAA+TGG | 0.374381 | 3.4:+11630876 | None:intergenic |
CATCTTGAATTACTGTATAA+AGG | 0.378164 | 3.4:-11630941 | None:intergenic |
GCAAAACAACCAGAAAAGTA+TGG | 0.383365 | 3.4:+11631130 | MS.gene85534:CDS |
AAGGACCTTGTTAGAGTTGA+AGG | 0.390046 | 3.4:+11631176 | MS.gene85534:CDS |
AGTTAAAACCTTCATTTGCT+TGG | 0.391509 | 3.4:+11631066 | MS.gene85534:CDS |
CCCGGTAGAAATAGTAGAAT+TGG | 0.400665 | 3.4:-11633562 | None:intergenic |
GTTAGAGTTGAAGGAAGAAA+TGG | 0.407843 | 3.4:+11631185 | MS.gene85534:CDS |
CCTCTGATATATCGTTTCTA+AGG | 0.416416 | 3.4:-11633413 | None:intergenic |
TGTTGCCATTCTCATCCTCC+TGG | 0.417992 | 3.4:-11631430 | None:intergenic |
AAATTTGTGCGCCAAGAACT+TGG | 0.428165 | 3.4:+11633227 | MS.gene85534:CDS |
GAGGCCCTTCAAGTGCTTCT+CGG | 0.431098 | 3.4:+11631350 | MS.gene85534:CDS |
TGCAAAGGAGTTTCAACAAA+TGG | 0.440241 | 3.4:-11630996 | None:intergenic |
ATGGGGAAATACTGGGAAAT+CGG | 0.443455 | 3.4:+11633593 | MS.gene85534:CDS |
GTCAAGTATTCAATAGATTC+CGG | 0.450565 | 3.4:-11631278 | None:intergenic |
TTGCATATTGCTGCATCTAT+GGG | 0.452667 | 3.4:+11631014 | MS.gene85534:CDS |
TCTATCATCTCCAAAATGAA+TGG | 0.461946 | 3.4:-11630966 | None:intergenic |
ACCAATTCTACTATTTCTAC+CGG | 0.466547 | 3.4:+11633561 | MS.gene85534:CDS |
GCATTGGTGACTTCCGAGCC+AGG | 0.478574 | 3.4:-11633321 | None:intergenic |
TTGAAAGTTGCAGCTGAAGC+AGG | 0.483184 | 3.4:+11630906 | MS.gene85534:CDS |
TTTAGTTTCCAAGCAAATGA+AGG | 0.485832 | 3.4:-11631074 | None:intergenic |
CTTCAGCTGCAACTTTCAAT+CGG | 0.493113 | 3.4:-11630902 | None:intergenic |
ACTGGGAAATCGGTCTTGCC+AGG | 0.495614 | 3.4:+11633603 | MS.gene85534:CDS |
GCCAGCCGAGAAGCACTTGA+AGG | 0.495753 | 3.4:-11631355 | None:intergenic |
TCAAGTGTTGGAGCAAAACC+TGG | 0.528913 | 3.4:+11633303 | MS.gene85534:CDS |
CAATTTCCGGATAGTTGATA+GGG | 0.530910 | 3.4:-11633670 | None:intergenic |
AGCGTGTTACTTTATATAGT+CGG | 0.537949 | 3.4:+11633390 | MS.gene85534:CDS |
GGAGTTTATGGGGAAATACT+GGG | 0.539132 | 3.4:+11633586 | MS.gene85534:CDS |
GGTAGAAATAGTAGAATTGG+TGG | 0.541263 | 3.4:-11633559 | None:intergenic |
ATTTGACTTGCAAAATGAAG+AGG | 0.542519 | 3.4:-11631215 | None:intergenic |
CAGAGGAGCAACGCAACACT+TGG | 0.546199 | 3.4:+11633430 | MS.gene85534:CDS |
TGTTGGAGCAAAACCTGGCT+CGG | 0.550019 | 3.4:+11633308 | MS.gene85534:CDS |
TTAAACCAGGAGGATGAGAA+TGG | 0.553403 | 3.4:+11631425 | MS.gene85534:CDS |
AATATATCGAAATAAGCTCC+TGG | 0.553734 | 3.4:-11633621 | None:intergenic |
AAGAGTATATTATCAAGTGT+TGG | 0.558477 | 3.4:+11633291 | MS.gene85534:CDS |
CCAGCCGAGAAGCACTTGAA+GGG | 0.558571 | 3.4:-11631354 | None:intergenic |
AGCGCTAAGTAGCGACCCAC+AGG | 0.570676 | 3.4:+11631469 | MS.gene85534:CDS |
CAATCAGCAATGTCTCCACC+AGG | 0.581004 | 3.4:+11633489 | MS.gene85534:CDS |
TTTCAAATTATGTGCAAGTG+TGG | 0.589464 | 3.4:-11633346 | None:intergenic |
CTATTGAATACTTGACTGTG+AGG | 0.590456 | 3.4:+11631285 | MS.gene85534:CDS |
TTCTTCCTTCAACTCTAACA+AGG | 0.592008 | 3.4:-11631181 | None:intergenic |
TGTTATGAATGAACAGTATG+AGG | 0.598636 | 3.4:+11631331 | MS.gene85534:CDS |
ATGTGCAAGTGTGGGTGCAT+TGG | 0.608967 | 3.4:-11633337 | None:intergenic |
AACAAATAAACAAAGAGGTG+CGG | 0.610952 | 3.4:+11631382 | MS.gene85534:CDS |
TCTACCGGGTGGAGTTTATG+GGG | 0.612132 | 3.4:+11633576 | MS.gene85534:CDS |
CCAATTCTACTATTTCTACC+GGG | 0.614475 | 3.4:+11633562 | MS.gene85534:CDS |
CTCAAAACAAATAAACAAAG+AGG | 0.621738 | 3.4:+11631377 | MS.gene85534:CDS |
GCTTGGAAACTAAATCAACA+AGG | 0.624515 | 3.4:+11631083 | MS.gene85534:CDS |
TTAACCTGATAAACTCCACC+TGG | 0.632375 | 3.4:-11633507 | None:intergenic |
ACCTGATAAACTCCACCTGG+TGG | 0.632726 | 3.4:-11633504 | None:intergenic |
TGGAGACATTGCTGATTGAA+AGG | 0.633403 | 3.4:-11633484 | None:intergenic |
GAAATATAAAATATTAAACC+AGG | 0.634407 | 3.4:+11631412 | MS.gene85534:CDS |
TTCAAATTATGTGCAAGTGT+GGG | 0.637177 | 3.4:-11633345 | None:intergenic |
ATAGATGCAGCAATATGCAA+AGG | 0.653352 | 3.4:-11631011 | None:intergenic |
ATTTCCCCATAAACTCCACC+CGG | 0.662445 | 3.4:-11633580 | None:intergenic |
ATTCTACTATTTCTACCGGG+TGG | 0.670567 | 3.4:+11633565 | MS.gene85534:CDS |
TCAGCAATGTCTCCACCAGG+TGG | 0.671251 | 3.4:+11633492 | MS.gene85534:CDS |
AAACAAAACATCATTAGACA+TGG | 0.676970 | 3.4:+11633251 | MS.gene85534:CDS |
CCTTAGAAACGATATATCAG+AGG | 0.678852 | 3.4:+11633413 | MS.gene85534:CDS |
TAGCGCTGAAATGTGCAAGA+TGG | 0.680693 | 3.4:-11631453 | None:intergenic |
ATATAAAATATTAAACCAGG+AGG | 0.697517 | 3.4:+11631415 | MS.gene85534:CDS |
AGACATTGCTGATTGAAAGG+TGG | 0.726306 | 3.4:-11633481 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATATTCTAATATAGAAA+AGG | + | chr3.4:11631818-11631837 | MS.gene85534:intron | 10.0% |
!!! | AGTATTTTTTATTAATTTCA+TGG | + | chr3.4:11631610-11631629 | MS.gene85534:intron | 10.0% |
!!! | TTTTCTATATTAGAATATTA+TGG | - | chr3.4:11631819-11631838 | None:intergenic | 10.0% |
!! | AAAAATTCTTTATCAACAAT+TGG | - | chr3.4:11631649-11631668 | None:intergenic | 15.0% |
!! | GAAATATAAAATATTAAACC+AGG | + | chr3.4:11631412-11631431 | MS.gene85534:CDS | 15.0% |
!! | AATATAGAAAAGGCAAATAA+AGG | + | chr3.4:11631828-11631847 | MS.gene85534:intron | 20.0% |
!! | ACCTATAAATAGACTTATAT+GGG | + | chr3.4:11631886-11631905 | MS.gene85534:intron | 20.0% |
!! | ATAAAAAAAATGATTACCTG+TGG | - | chr3.4:11631488-11631507 | None:intergenic | 20.0% |
!! | ATATAAAATATTAAACCAGG+AGG | + | chr3.4:11631415-11631434 | MS.gene85534:CDS | 20.0% |
!! | TAAAAAAAATGATTACCTGT+GGG | - | chr3.4:11631487-11631506 | None:intergenic | 20.0% |
! | AAACAAAACATCATTAGACA+TGG | + | chr3.4:11633251-11633270 | MS.gene85534:CDS | 25.0% |
! | AATCGTATAAATTAGACTGA+TGG | + | chr3.4:11631525-11631544 | MS.gene85534:intron | 25.0% |
! | ACCCATATAAGTCTATTTAT+AGG | - | chr3.4:11631890-11631909 | None:intergenic | 25.0% |
! | AGAATATTATGGATGTTTCT+AGG | - | chr3.4:11631808-11631827 | None:intergenic | 25.0% |
! | ATAACAAATATTATGGCAAG+AGG | + | chr3.4:11632680-11632699 | MS.gene85534:intron | 25.0% |
! | CACCTATAAATAGACTTATA+TGG | + | chr3.4:11631885-11631904 | MS.gene85534:intron | 25.0% |
! | CATCTTGAATTACTGTATAA+AGG | - | chr3.4:11630944-11630963 | None:intergenic | 25.0% |
! | CTCAAAACAAATAAACAAAG+AGG | + | chr3.4:11631377-11631396 | MS.gene85534:CDS | 25.0% |
! | GATGCCAATAACAAATATTA+TGG | + | chr3.4:11632673-11632692 | MS.gene85534:intron | 25.0% |
! | GTTATAGAAGAACATATAGT+TGG | - | chr3.4:11632122-11632141 | None:intergenic | 25.0% |
! | TATAAATTAGACTGATGGTT+TGG | + | chr3.4:11631530-11631549 | MS.gene85534:intron | 25.0% |
! | TGCAATGTCAATAATATTGA+AGG | + | chr3.4:11631942-11631961 | MS.gene85534:intron | 25.0% |
! | TTCAAACAAAAAAGCTAAGA+AGG | + | chr3.4:11632228-11632247 | MS.gene85534:intron | 25.0% |
!! | AAGAGTATATTATCAAGTGT+TGG | + | chr3.4:11633291-11633310 | MS.gene85534:CDS | 25.0% |
!!! | AGGTTTTAACTTCATAATCT+CGG | - | chr3.4:11631057-11631076 | None:intergenic | 25.0% |
!!! | CTTGCCATAATATTTGTTAT+TGG | - | chr3.4:11632680-11632699 | None:intergenic | 25.0% |
!!! | TTCTAGAACTAGAATAATCT+AGG | - | chr3.4:11631854-11631873 | None:intergenic | 25.0% |
AACAAATAAACAAAGAGGTG+CGG | + | chr3.4:11631382-11631401 | MS.gene85534:CDS | 30.0% | |
AATATATCGAAATAAGCTCC+TGG | - | chr3.4:11633624-11633643 | None:intergenic | 30.0% | |
AGATTGTTCCATTAATGTCT+AGG | + | chr3.4:11631771-11631790 | MS.gene85534:intron | 30.0% | |
AGTTAAAACCTTCATTTGCT+TGG | + | chr3.4:11631066-11631085 | MS.gene85534:CDS | 30.0% | |
ATGCAACTAAGATGCAAAAA+TGG | + | chr3.4:11632551-11632570 | MS.gene85534:intron | 30.0% | |
ATTGTTGAAGATTTCTGACA+GGG | - | chr3.4:11632513-11632532 | None:intergenic | 30.0% | |
CAACTTAACCTAGACATTAA+TGG | - | chr3.4:11631782-11631801 | None:intergenic | 30.0% | |
CTCCATTTATATTTATTGCC+TGG | - | chr3.4:11632362-11632381 | None:intergenic | 30.0% | |
CTTGTTAAAGACATCTAACA+AGG | - | chr3.4:11632578-11632597 | None:intergenic | 30.0% | |
GTCAAGTATTCAATAGATTC+CGG | - | chr3.4:11631281-11631300 | None:intergenic | 30.0% | |
GTCCAGGCAATAAATATAAA+TGG | + | chr3.4:11632357-11632376 | MS.gene85534:intron | 30.0% | |
TATTAATTTCATGGTAGCAC+AGG | + | chr3.4:11631619-11631638 | MS.gene85534:intron | 30.0% | |
TCTATCATCTCCAAAATGAA+TGG | - | chr3.4:11630969-11630988 | None:intergenic | 30.0% | |
TGTTATGAATGAACAGTATG+AGG | + | chr3.4:11631331-11631350 | MS.gene85534:CDS | 30.0% | |
TTATTGACATTGCATCTCAA+AGG | - | chr3.4:11631936-11631955 | None:intergenic | 30.0% | |
TTCAAATTATGTGCAAGTGT+GGG | - | chr3.4:11633348-11633367 | None:intergenic | 30.0% | |
TTTCAAATTATGTGCAAGTG+TGG | - | chr3.4:11633349-11633368 | None:intergenic | 30.0% | |
! | AGTTTTCGAAATATGCATCA+AGG | + | chr3.4:11632808-11632827 | MS.gene85534:intron | 30.0% |
! | CTTCATTTTGCAAGTCAAAT+TGG | + | chr3.4:11631218-11631237 | MS.gene85534:CDS | 30.0% |
! | GAAAATTACTAGAGTACCTA+AGG | + | chr3.4:11632607-11632626 | MS.gene85534:intron | 30.0% |
! | TAATTTTCTCTTTGCTTGTC+CGG | + | chr3.4:11631259-11631278 | MS.gene85534:CDS | 30.0% |
! | TCAAGATGATCCATTCATTT+TGG | + | chr3.4:11630956-11630975 | MS.gene85534:CDS | 30.0% |
! | TTTAGTTTCCAAGCAAATGA+AGG | - | chr3.4:11631077-11631096 | None:intergenic | 30.0% |
!! | ACCAATTCTACTATTTCTAC+CGG | + | chr3.4:11633561-11633580 | MS.gene85534:CDS | 30.0% |
!! | AGCGTGTTACTTTATATAGT+CGG | + | chr3.4:11633390-11633409 | MS.gene85534:CDS | 30.0% |
!! | ATTTGACTTGCAAAATGAAG+AGG | - | chr3.4:11631218-11631237 | None:intergenic | 30.0% |
!!! | TGTTTTGTTTTCCAAGTTCT+TGG | - | chr3.4:11633241-11633260 | None:intergenic | 30.0% |
!!! | TTTTAACTTCATAATCTCGG+AGG | - | chr3.4:11631054-11631073 | None:intergenic | 30.0% |
AAAAGCTAAGAAGGCTATAG+AGG | + | chr3.4:11632237-11632256 | MS.gene85534:intron | 35.0% | |
AATCTACTACATGAGTGACA+AGG | + | chr3.4:11632455-11632474 | MS.gene85534:intron | 35.0% | |
AATCTTCAACAATGTCGACA+AGG | + | chr3.4:11632520-11632539 | MS.gene85534:intron | 35.0% | |
ACAAATATTATGGCAAGAGG+TGG | + | chr3.4:11632683-11632702 | MS.gene85534:intron | 35.0% | |
ATAGATGCAGCAATATGCAA+AGG | - | chr3.4:11631014-11631033 | None:intergenic | 35.0% | |
ATGTCTTTAACAAGACCAAC+AGG | + | chr3.4:11632584-11632603 | MS.gene85534:intron | 35.0% | |
ATTCGTGATGAGCATATTGT+AGG | - | chr3.4:11631995-11632014 | None:intergenic | 35.0% | |
ATTGCATCTCAAAGGCTTAA+AGG | - | chr3.4:11631928-11631947 | None:intergenic | 35.0% | |
CATGTAGTAGATTCTTGACA+GGG | - | chr3.4:11632448-11632467 | None:intergenic | 35.0% | |
CATTGTTGAAGATTTCTGAC+AGG | - | chr3.4:11632514-11632533 | None:intergenic | 35.0% | |
CCTCTGATATATCGTTTCTA+AGG | - | chr3.4:11633416-11633435 | None:intergenic | 35.0% | |
CCTTAGAAACGATATATCAG+AGG | + | chr3.4:11633413-11633432 | MS.gene85534:CDS | 35.0% | |
CTATTGAATACTTGACTGTG+AGG | + | chr3.4:11631285-11631304 | MS.gene85534:CDS | 35.0% | |
GCAAAACAACCAGAAAAGTA+TGG | + | chr3.4:11631130-11631149 | MS.gene85534:CDS | 35.0% | |
GCTTGGAAACTAAATCAACA+AGG | + | chr3.4:11631083-11631102 | MS.gene85534:CDS | 35.0% | |
GGTAGAAATAGTAGAATTGG+TGG | - | chr3.4:11633562-11633581 | None:intergenic | 35.0% | |
GTCTATGACTCAAACACAAA+AGG | + | chr3.4:11632170-11632189 | MS.gene85534:intron | 35.0% | |
GTTAGAGTTGAAGGAAGAAA+TGG | + | chr3.4:11631185-11631204 | MS.gene85534:CDS | 35.0% | |
TCATGTAGTAGATTCTTGAC+AGG | - | chr3.4:11632449-11632468 | None:intergenic | 35.0% | |
TCGCTTTGTGAACTTCAATA+AGG | + | chr3.4:11631157-11631176 | MS.gene85534:CDS | 35.0% | |
TGCAAAGGAGTTTCAACAAA+TGG | - | chr3.4:11630999-11631018 | None:intergenic | 35.0% | |
TGTCTTTAACAAGACCAACA+GGG | + | chr3.4:11632585-11632604 | MS.gene85534:intron | 35.0% | |
TTCTTCCTTCAACTCTAACA+AGG | - | chr3.4:11631184-11631203 | None:intergenic | 35.0% | |
TTGCATATTGCTGCATCTAT+GGG | + | chr3.4:11631014-11631033 | MS.gene85534:CDS | 35.0% | |
TTGGAATATATAGAGCGTGA+GGG | - | chr3.4:11632038-11632057 | None:intergenic | 35.0% | |
TTTCGAAATATGCATCAAGG+AGG | + | chr3.4:11632811-11632830 | MS.gene85534:intron | 35.0% | |
TTTGCATATTGCTGCATCTA+TGG | + | chr3.4:11631013-11631032 | MS.gene85534:CDS | 35.0% | |
! | AATTACTAGAGTACCTAAGG+AGG | + | chr3.4:11632610-11632629 | MS.gene85534:intron | 35.0% |
! | ACTCTAGTAATTTTCCCTGT+TGG | - | chr3.4:11632602-11632621 | None:intergenic | 35.0% |
! | CAATTTCCGGATAGTTGATA+GGG | - | chr3.4:11633673-11633692 | None:intergenic | 35.0% |
! | CTTAACTTGAGTACAAGCAT+AGG | + | chr3.4:11632399-11632418 | MS.gene85534:intron | 35.0% |
! | CTTTTTCCCTATCAACTATC+CGG | + | chr3.4:11633664-11633683 | MS.gene85534:CDS | 35.0% |
! | TCCTAGTCTTTATCAACTGT+TGG | - | chr3.4:11633206-11633225 | None:intergenic | 35.0% |
! | TTTTGCAAGTCAAATTGGTG+AGG | + | chr3.4:11631223-11631242 | MS.gene85534:CDS | 35.0% |
! | TTTTGCATAGCAAGATGGAT+AGG | - | chr3.4:11631116-11631135 | None:intergenic | 35.0% |
!! | ACTATGAAGAGTATCAATGC+AGG | + | chr3.4:11632735-11632754 | MS.gene85534:intron | 35.0% |
!! | CCAATTCTACTATTTCTACC+GGG | + | chr3.4:11633562-11633581 | MS.gene85534:CDS | 35.0% |
!! | TCCAACAGTTGATAAAGACT+AGG | + | chr3.4:11633202-11633221 | MS.gene85534:intron | 35.0% |
!! | TTTGTTATTGGCATCCTTGT+CGG | - | chr3.4:11632668-11632687 | None:intergenic | 35.0% |
AAATTTGTGCGCCAAGAACT+TGG | + | chr3.4:11633227-11633246 | MS.gene85534:CDS | 40.0% | |
AAGGACCTTGTTAGAGTTGA+AGG | + | chr3.4:11631176-11631195 | MS.gene85534:CDS | 40.0% | |
ATGGGGAAATACTGGGAAAT+CGG | + | chr3.4:11633593-11633612 | MS.gene85534:CDS | 40.0% | |
CCAATTTCCGGATAGTTGAT+AGG | - | chr3.4:11633674-11633693 | None:intergenic | 40.0% | |
CCCGGTAGAAATAGTAGAAT+TGG | - | chr3.4:11633565-11633584 | None:intergenic | 40.0% | |
CCTATCAACTATCCGGAAAT+TGG | + | chr3.4:11633671-11633690 | MS.gene85534:CDS | 40.0% | |
CGCTCTATATATTCCAACAG+TGG | + | chr3.4:11632041-11632060 | MS.gene85534:intron | 40.0% | |
CTTCAGCTGCAACTTTCAAT+CGG | - | chr3.4:11630905-11630924 | None:intergenic | 40.0% | |
GAGGAGACACATTAGTGATA+TGG | - | chr3.4:11631973-11631992 | None:intergenic | 40.0% | |
GGAGTTTATGGGGAAATACT+GGG | + | chr3.4:11633586-11633605 | MS.gene85534:CDS | 40.0% | |
GTACTCAAGTTAAGCATCAG+AGG | - | chr3.4:11632393-11632412 | None:intergenic | 40.0% | |
GTTGGAATATATAGAGCGTG+AGG | - | chr3.4:11632039-11632058 | None:intergenic | 40.0% | |
TCATAATCTCGGAGGCAAAT+TGG | - | chr3.4:11631046-11631065 | None:intergenic | 40.0% | |
TCTTGTTGAAGACTTCTGCA+TGG | - | chr3.4:11632645-11632664 | None:intergenic | 40.0% | |
TGGAGTTTATGGGGAAATAC+TGG | + | chr3.4:11633585-11633604 | MS.gene85534:CDS | 40.0% | |
TTAAACCAGGAGGATGAGAA+TGG | + | chr3.4:11631425-11631444 | MS.gene85534:CDS | 40.0% | |
TTAACCTGATAAACTCCACC+TGG | - | chr3.4:11633510-11633529 | None:intergenic | 40.0% | |
! | AGACATTGCTGATTGAAAGG+TGG | - | chr3.4:11633484-11633503 | None:intergenic | 40.0% |
! | AGCGAGTAACCATACTTTTC+TGG | - | chr3.4:11631142-11631161 | None:intergenic | 40.0% |
! | GACTTGAACTTTAGAGGATC+GGG | - | chr3.4:11632282-11632301 | None:intergenic | 40.0% |
! | GGACTTGAACTTTAGAGGAT+CGG | - | chr3.4:11632283-11632302 | None:intergenic | 40.0% |
! | TGGAGACATTGCTGATTGAA+AGG | - | chr3.4:11633487-11633506 | None:intergenic | 40.0% |
!! | AACATATAGTTGGTGACACG+AGG | - | chr3.4:11632112-11632131 | None:intergenic | 40.0% |
!! | ATGAAGAGTATCAATGCAGG+AGG | + | chr3.4:11632738-11632757 | MS.gene85534:intron | 40.0% |
!! | ATTCTACTATTTCTACCGGG+TGG | + | chr3.4:11633565-11633584 | MS.gene85534:CDS | 40.0% |
!! | GGTTGTTTTGCATAGCAAGA+TGG | - | chr3.4:11631121-11631140 | None:intergenic | 40.0% |
AGAAGGCTATAGAGGAGTTC+AGG | + | chr3.4:11632245-11632264 | MS.gene85534:intron | 45.0% | |
AGTCTTCAACAAGACCGACA+AGG | + | chr3.4:11632651-11632670 | MS.gene85534:intron | 45.0% | |
AGTTAAGCATCAGAGGTCAC+AGG | - | chr3.4:11632386-11632405 | None:intergenic | 45.0% | |
ATGGACCATTCTTCCTCCTT+AGG | - | chr3.4:11632626-11632645 | None:intergenic | 45.0% | |
ATTTCCCCATAAACTCCACC+CGG | - | chr3.4:11633583-11633602 | None:intergenic | 45.0% | |
CATAGGTCTTCGACATGAGT+CGG | - | chr3.4:11632304-11632323 | None:intergenic | 45.0% | |
CGTGATGAGCATATTGTAGG+AGG | - | chr3.4:11631992-11632011 | None:intergenic | 45.0% | |
GAGTACCTAAGGAGGAAGAA+TGG | + | chr3.4:11632618-11632637 | MS.gene85534:intron | 45.0% | |
GAGTCGGACTTGAACTTTAG+AGG | - | chr3.4:11632288-11632307 | None:intergenic | 45.0% | |
TCAAACAGAGTAGAGCCTTG+TGG | - | chr3.4:11632207-11632226 | None:intergenic | 45.0% | |
TTCGAATAGAGCACAAGTCC+AGG | + | chr3.4:11632341-11632360 | MS.gene85534:intron | 45.0% | |
TTCTACCGGGTGGAGTTTAT+GGG | + | chr3.4:11633575-11633594 | MS.gene85534:CDS | 45.0% | |
TTGAAAGTTGCAGCTGAAGC+AGG | + | chr3.4:11630906-11630925 | MS.gene85534:CDS | 45.0% | |
TTTCTACCGGGTGGAGTTTA+TGG | + | chr3.4:11633574-11633593 | MS.gene85534:CDS | 45.0% | |
! | AAGGAGTACATGTAGCCACA+AGG | + | chr3.4:11632189-11632208 | MS.gene85534:intron | 45.0% |
! | CTTGAGTGTCTTTTCGCCAT+AGG | - | chr3.4:11632321-11632340 | None:intergenic | 45.0% |
! | TAGCGCTGAAATGTGCAAGA+TGG | - | chr3.4:11631456-11631475 | None:intergenic | 45.0% |
!! | TCAAGTGTTGGAGCAAAACC+TGG | + | chr3.4:11633303-11633322 | MS.gene85534:CDS | 45.0% |
ACCTGATAAACTCCACCTGG+TGG | - | chr3.4:11633507-11633526 | None:intergenic | 50.0% | |
AGCTGCGTTCGGTCATTAAC+AGG | + | chr3.4:11632070-11632089 | MS.gene85534:intron | 50.0% | |
AGTGGTATCAGAGCTGCGTT+CGG | + | chr3.4:11632059-11632078 | MS.gene85534:intron | 50.0% | |
ATGTGCAAGTGTGGGTGCAT+TGG | - | chr3.4:11633340-11633359 | None:intergenic | 50.0% | |
CAATCAGCAATGTCTCCACC+AGG | + | chr3.4:11633489-11633508 | MS.gene85534:CDS | 50.0% | |
CGACTCATGTCGAAGACCTA+TGG | + | chr3.4:11632302-11632321 | MS.gene85534:intron | 50.0% | |
GCTGCGTTCGGTCATTAACA+GGG | + | chr3.4:11632071-11632090 | MS.gene85534:intron | 50.0% | |
TCCACCAGGTGGAGTTTATC+AGG | + | chr3.4:11633503-11633522 | MS.gene85534:CDS | 50.0% | |
TCTACCGGGTGGAGTTTATG+GGG | + | chr3.4:11633576-11633595 | MS.gene85534:CDS | 50.0% | |
TGTTGCCATTCTCATCCTCC+TGG | - | chr3.4:11631433-11631452 | None:intergenic | 50.0% | |
TGTTGGAGCAAAACCTGGCT+CGG | + | chr3.4:11633308-11633327 | MS.gene85534:CDS | 50.0% | |
! | CTTTAGAGGATCGGGCTGTT+AGG | - | chr3.4:11632274-11632293 | None:intergenic | 50.0% |
ACTGGGAAATCGGTCTTGCC+AGG | + | chr3.4:11633603-11633622 | MS.gene85534:CDS | 55.0% | |
ATAGAGCGTGAGGGAGCTAG+TGG | - | chr3.4:11632029-11632048 | None:intergenic | 55.0% | |
CAGAGGAGCAACGCAACACT+TGG | + | chr3.4:11633430-11633449 | MS.gene85534:CDS | 55.0% | |
GAGGCCCTTCAAGTGCTTCT+CGG | + | chr3.4:11631350-11631369 | MS.gene85534:CDS | 55.0% | |
TCAGCAATGTCTCCACCAGG+TGG | + | chr3.4:11633492-11633511 | MS.gene85534:CDS | 55.0% | |
! | CGCAGCTCTGATACCACTGT+TGG | - | chr3.4:11632057-11632076 | None:intergenic | 55.0% |
!! | CCAGCCGAGAAGCACTTGAA+GGG | - | chr3.4:11631357-11631376 | None:intergenic | 55.0% |
AGCGCTAAGTAGCGACCCAC+AGG | + | chr3.4:11631469-11631488 | MS.gene85534:CDS | 60.0% | |
AGCGTGAGGGAGCTAGTGGT+AGG | - | chr3.4:11632025-11632044 | None:intergenic | 60.0% | |
CCCTTCAAGTGCTTCTCGGC+TGG | + | chr3.4:11631354-11631373 | MS.gene85534:CDS | 60.0% | |
GCGTGAGGGAGCTAGTGGTA+GGG | - | chr3.4:11632024-11632043 | None:intergenic | 60.0% | |
! | GCATTGGTGACTTCCGAGCC+AGG | - | chr3.4:11633324-11633343 | None:intergenic | 60.0% |
!! | GCCAGCCGAGAAGCACTTGA+AGG | - | chr3.4:11631358-11631377 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 11630879 | 11633701 | 11630879 | ID=MS.gene85534 |
chr3.4 | mRNA | 11630879 | 11633701 | 11630879 | ID=MS.gene85534.t1;Parent=MS.gene85534 |
chr3.4 | exon | 11630879 | 11631490 | 11630879 | ID=MS.gene85534.t1.exon1;Parent=MS.gene85534.t1 |
chr3.4 | CDS | 11630879 | 11631490 | 11630879 | ID=cds.MS.gene85534.t1;Parent=MS.gene85534.t1 |
chr3.4 | exon | 11633219 | 11633701 | 11633219 | ID=MS.gene85534.t1.exon2;Parent=MS.gene85534.t1 |
chr3.4 | CDS | 11633219 | 11633701 | 11633219 | ID=cds.MS.gene85534.t1;Parent=MS.gene85534.t1 |
Gene Sequence |
Protein sequence |