AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85534


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85534.t1 MTR_3g016210 91.777 377 13 1 1 359 1 377 0.0 702
MS.gene85534.t1 MTR_8g072510 69.399 366 101 2 1 359 1 362 7.32e-177 499
MS.gene85534.t1 MTR_8g062410 65.761 368 106 5 1 359 1 357 8.70e-165 468
MS.gene85534.t1 MTR_8g039620 66.848 368 108 4 2 359 6 369 1.12e-164 468
MS.gene85534.t1 MTR_1g059930 67.797 354 104 2 8 354 10 360 1.98e-160 457
MS.gene85534.t1 MTR_7g021090 62.740 365 118 4 3 359 2 356 3.02e-157 447
MS.gene85534.t1 MTR_8g073260 61.281 359 123 4 1 351 1 351 1.31e-153 440
MS.gene85534.t1 MTR_8g068990 60.218 367 116 5 2 357 4 351 5.10e-147 423
MS.gene85534.t1 MTR_7g451420 66.238 311 98 1 3 306 2 312 1.19e-144 412
MS.gene85534.t1 MTR_8g069880 60.556 360 129 3 6 357 3 357 2.76e-141 409
MS.gene85534.t1 MTR_8g066670 62.670 367 123 4 1 359 1067 1427 5.89e-139 430
MS.gene85534.t1 MTR_8g467780 57.105 373 140 3 9 364 10 379 2.28e-133 389
MS.gene85534.t1 MTR_8g040930 62.025 316 106 2 52 357 1 312 5.45e-133 385
MS.gene85534.t1 MTR_8g041240 62.025 316 106 2 52 357 1 312 5.45e-133 385
MS.gene85534.t1 MTR_3g105650 49.355 310 142 3 8 303 3 311 7.77e-100 302
MS.gene85534.t1 MTR_8g073275 43.536 379 134 7 52 360 1 369 1.67e-85 266
MS.gene85534.t1 MTR_1g069110 28.297 364 201 9 17 357 25 351 1.74e-29 118
MS.gene85534.t1 MTR_7g099580 26.351 296 174 6 22 312 24 280 9.85e-28 111
MS.gene85534.t1 MTR_7g099570 29.319 191 121 3 13 198 12 193 3.67e-19 89.4
MS.gene85534.t1 MTR_7g117620 26.370 292 164 7 45 302 119 393 3.71e-17 83.2
MS.gene85534.t1 MTR_2g101320 26.852 216 133 4 38 238 134 339 5.67e-16 79.7
MS.gene85534.t1 MTR_4g062100 22.222 306 213 6 1 302 100 384 5.54e-15 76.6
MS.gene85534.t1 MTR_1g115575 25.939 293 167 9 45 303 169 445 1.17e-14 75.5
MS.gene85534.t1 MTR_1g032100 23.867 331 195 9 10 302 60 371 1.76e-14 75.1
MS.gene85534.t1 MTR_5g085500 29.012 162 96 4 72 222 1 154 1.43e-12 68.9
MS.gene85534.t1 MTR_2g101310 26.471 238 140 7 41 253 137 364 1.60e-12 68.9
MS.gene85534.t1 MTR_2g096190 25.882 170 124 1 1 170 96 263 2.03e-12 68.6
MS.gene85534.t1 MTR_2g101310 26.471 238 140 7 41 253 137 364 4.38e-12 67.4
MS.gene85534.t1 MTR_8g105260 22.414 290 181 5 45 302 101 378 4.44e-12 67.8
MS.gene85534.t1 MTR_5g085830 22.485 338 207 9 10 302 247 574 8.37e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85534.t1 AT4G10720 40.356 337 184 3 9 330 4 338 3.89e-83 259
MS.gene85534.t1 AT4G10720 38.504 361 191 3 9 354 4 348 2.19e-82 258
MS.gene85534.t1 AT5G54620 39.869 306 170 4 9 300 4 309 2.06e-69 224
MS.gene85534.t1 AT5G15500 37.166 374 201 8 10 364 6 364 2.13e-69 224
MS.gene85534.t1 AT5G54610 39.274 303 168 4 9 297 4 304 4.34e-69 223
MS.gene85534.t1 AT1G14500 39.490 314 174 4 9 306 4 317 7.19e-69 223
MS.gene85534.t1 AT1G14480 37.462 331 187 4 9 319 4 334 1.15e-68 222
MS.gene85534.t1 AT1G14480 36.913 298 162 4 9 306 4 275 1.02e-54 185
MS.gene85534.t1 AT5G51160 30.030 333 186 11 58 357 31 349 8.79e-34 130
MS.gene85534.t1 AT5G15500 32.601 273 150 8 111 364 1 258 8.89e-30 117
MS.gene85534.t1 AT4G03500 24.289 387 176 12 10 303 140 502 9.67e-19 88.2
MS.gene85534.t1 AT4G03500 24.289 387 176 12 10 303 117 479 1.09e-18 87.8
MS.gene85534.t1 AT4G03500 24.289 387 176 12 10 303 117 479 1.09e-18 87.8
MS.gene85534.t1 AT4G03460 29.412 221 114 4 101 303 290 486 5.65e-17 82.8
MS.gene85534.t1 AT4G03460 29.412 221 114 4 101 303 258 454 5.86e-17 82.8
MS.gene85534.t1 AT5G54700 25.472 318 162 10 25 330 20 274 7.62e-16 79.0
MS.gene85534.t1 AT2G01680 23.188 345 200 8 45 357 97 408 9.46e-16 79.0
MS.gene85534.t1 AT1G34050 25.000 268 172 5 58 306 166 423 1.23e-14 75.5
MS.gene85534.t1 AT3G09550 26.364 330 182 12 13 303 150 457 1.37e-14 75.5
MS.gene85534.t1 AT3G09550 26.364 330 182 12 13 303 150 457 1.37e-14 75.5
MS.gene85534.t1 AT3G09550 26.364 330 182 12 13 303 157 464 1.45e-14 75.5
MS.gene85534.t1 AT1G03670 25.676 296 158 7 89 349 266 534 1.73e-14 75.1
MS.gene85534.t1 AT5G60070 23.701 308 207 8 2 302 104 390 4.06e-14 73.9
MS.gene85534.t1 AT5G54700 25.911 247 133 7 102 330 23 237 6.90e-14 72.4
MS.gene85534.t1 AT1G10340 26.557 305 172 9 46 306 136 432 9.17e-14 72.8
MS.gene85534.t1 AT1G10340 27.068 266 147 7 80 306 171 428 1.35e-13 72.4
MS.gene85534.t1 AT2G31820 26.214 309 166 13 45 314 227 512 5.26e-12 67.8
MS.gene85534.t1 AT3G12360 24.855 346 181 13 45 354 167 469 1.09e-11 66.6
MS.gene85534.t1 AT3G12360 25.850 294 166 11 45 303 155 431 1.33e-11 66.2
MS.gene85534.t1 AT1G05640 26.351 296 159 13 45 302 191 465 2.32e-11 65.5
MS.gene85534.t1 AT5G02620 22.936 327 205 9 10 302 60 373 3.79e-11 64.7
MS.gene85534.t1 AT5G02620 22.936 327 205 9 10 302 60 373 3.79e-11 64.7
MS.gene85534.t1 AT5G02620 22.936 327 205 9 10 302 60 373 3.79e-11 64.7
MS.gene85534.t1 AT4G03470 24.088 274 165 7 61 320 289 533 4.42e-11 64.7

Find 73 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTACCGGGTGGAGTTTA+TGG 0.125721 3.4:+11633574 MS.gene85534:CDS
TCAAGATGATCCATTCATTT+TGG 0.177439 3.4:+11630956 MS.gene85534:CDS
TTTGCATATTGCTGCATCTA+TGG 0.193758 3.4:+11631013 MS.gene85534:CDS
CCTATCAACTATCCGGAAAT+TGG 0.221551 3.4:+11633671 MS.gene85534:CDS
TCAATTAGAGAGCCAATTTC+CGG 0.269733 3.4:-11633683 None:intergenic
TGGAGTTTATGGGGAAATAC+TGG 0.300069 3.4:+11633585 MS.gene85534:CDS
TCCACCAGGTGGAGTTTATC+AGG 0.304729 3.4:+11633503 MS.gene85534:CDS
TCGCTTTGTGAACTTCAATA+AGG 0.312953 3.4:+11631157 MS.gene85534:CDS
TCATAATCTCGGAGGCAAAT+TGG 0.327443 3.4:-11631043 None:intergenic
CCAATTTCCGGATAGTTGAT+AGG 0.334977 3.4:-11633671 None:intergenic
TTCTACCGGGTGGAGTTTAT+GGG 0.343021 3.4:+11633575 MS.gene85534:CDS
CCCTTCAAGTGCTTCTCGGC+TGG 0.361002 3.4:+11631354 MS.gene85534:CDS
AACATGAATAGCACAAATAA+TGG 0.374381 3.4:+11630876 None:intergenic
CATCTTGAATTACTGTATAA+AGG 0.378164 3.4:-11630941 None:intergenic
GCAAAACAACCAGAAAAGTA+TGG 0.383365 3.4:+11631130 MS.gene85534:CDS
AAGGACCTTGTTAGAGTTGA+AGG 0.390046 3.4:+11631176 MS.gene85534:CDS
AGTTAAAACCTTCATTTGCT+TGG 0.391509 3.4:+11631066 MS.gene85534:CDS
CCCGGTAGAAATAGTAGAAT+TGG 0.400665 3.4:-11633562 None:intergenic
GTTAGAGTTGAAGGAAGAAA+TGG 0.407843 3.4:+11631185 MS.gene85534:CDS
CCTCTGATATATCGTTTCTA+AGG 0.416416 3.4:-11633413 None:intergenic
TGTTGCCATTCTCATCCTCC+TGG 0.417992 3.4:-11631430 None:intergenic
AAATTTGTGCGCCAAGAACT+TGG 0.428165 3.4:+11633227 MS.gene85534:CDS
GAGGCCCTTCAAGTGCTTCT+CGG 0.431098 3.4:+11631350 MS.gene85534:CDS
TGCAAAGGAGTTTCAACAAA+TGG 0.440241 3.4:-11630996 None:intergenic
ATGGGGAAATACTGGGAAAT+CGG 0.443455 3.4:+11633593 MS.gene85534:CDS
GTCAAGTATTCAATAGATTC+CGG 0.450565 3.4:-11631278 None:intergenic
TTGCATATTGCTGCATCTAT+GGG 0.452667 3.4:+11631014 MS.gene85534:CDS
TCTATCATCTCCAAAATGAA+TGG 0.461946 3.4:-11630966 None:intergenic
ACCAATTCTACTATTTCTAC+CGG 0.466547 3.4:+11633561 MS.gene85534:CDS
GCATTGGTGACTTCCGAGCC+AGG 0.478574 3.4:-11633321 None:intergenic
TTGAAAGTTGCAGCTGAAGC+AGG 0.483184 3.4:+11630906 MS.gene85534:CDS
TTTAGTTTCCAAGCAAATGA+AGG 0.485832 3.4:-11631074 None:intergenic
CTTCAGCTGCAACTTTCAAT+CGG 0.493113 3.4:-11630902 None:intergenic
ACTGGGAAATCGGTCTTGCC+AGG 0.495614 3.4:+11633603 MS.gene85534:CDS
GCCAGCCGAGAAGCACTTGA+AGG 0.495753 3.4:-11631355 None:intergenic
TCAAGTGTTGGAGCAAAACC+TGG 0.528913 3.4:+11633303 MS.gene85534:CDS
CAATTTCCGGATAGTTGATA+GGG 0.530910 3.4:-11633670 None:intergenic
AGCGTGTTACTTTATATAGT+CGG 0.537949 3.4:+11633390 MS.gene85534:CDS
GGAGTTTATGGGGAAATACT+GGG 0.539132 3.4:+11633586 MS.gene85534:CDS
GGTAGAAATAGTAGAATTGG+TGG 0.541263 3.4:-11633559 None:intergenic
ATTTGACTTGCAAAATGAAG+AGG 0.542519 3.4:-11631215 None:intergenic
CAGAGGAGCAACGCAACACT+TGG 0.546199 3.4:+11633430 MS.gene85534:CDS
TGTTGGAGCAAAACCTGGCT+CGG 0.550019 3.4:+11633308 MS.gene85534:CDS
TTAAACCAGGAGGATGAGAA+TGG 0.553403 3.4:+11631425 MS.gene85534:CDS
AATATATCGAAATAAGCTCC+TGG 0.553734 3.4:-11633621 None:intergenic
AAGAGTATATTATCAAGTGT+TGG 0.558477 3.4:+11633291 MS.gene85534:CDS
CCAGCCGAGAAGCACTTGAA+GGG 0.558571 3.4:-11631354 None:intergenic
AGCGCTAAGTAGCGACCCAC+AGG 0.570676 3.4:+11631469 MS.gene85534:CDS
CAATCAGCAATGTCTCCACC+AGG 0.581004 3.4:+11633489 MS.gene85534:CDS
TTTCAAATTATGTGCAAGTG+TGG 0.589464 3.4:-11633346 None:intergenic
CTATTGAATACTTGACTGTG+AGG 0.590456 3.4:+11631285 MS.gene85534:CDS
TTCTTCCTTCAACTCTAACA+AGG 0.592008 3.4:-11631181 None:intergenic
TGTTATGAATGAACAGTATG+AGG 0.598636 3.4:+11631331 MS.gene85534:CDS
ATGTGCAAGTGTGGGTGCAT+TGG 0.608967 3.4:-11633337 None:intergenic
AACAAATAAACAAAGAGGTG+CGG 0.610952 3.4:+11631382 MS.gene85534:CDS
TCTACCGGGTGGAGTTTATG+GGG 0.612132 3.4:+11633576 MS.gene85534:CDS
CCAATTCTACTATTTCTACC+GGG 0.614475 3.4:+11633562 MS.gene85534:CDS
CTCAAAACAAATAAACAAAG+AGG 0.621738 3.4:+11631377 MS.gene85534:CDS
GCTTGGAAACTAAATCAACA+AGG 0.624515 3.4:+11631083 MS.gene85534:CDS
TTAACCTGATAAACTCCACC+TGG 0.632375 3.4:-11633507 None:intergenic
ACCTGATAAACTCCACCTGG+TGG 0.632726 3.4:-11633504 None:intergenic
TGGAGACATTGCTGATTGAA+AGG 0.633403 3.4:-11633484 None:intergenic
GAAATATAAAATATTAAACC+AGG 0.634407 3.4:+11631412 MS.gene85534:CDS
TTCAAATTATGTGCAAGTGT+GGG 0.637177 3.4:-11633345 None:intergenic
ATAGATGCAGCAATATGCAA+AGG 0.653352 3.4:-11631011 None:intergenic
ATTTCCCCATAAACTCCACC+CGG 0.662445 3.4:-11633580 None:intergenic
ATTCTACTATTTCTACCGGG+TGG 0.670567 3.4:+11633565 MS.gene85534:CDS
TCAGCAATGTCTCCACCAGG+TGG 0.671251 3.4:+11633492 MS.gene85534:CDS
AAACAAAACATCATTAGACA+TGG 0.676970 3.4:+11633251 MS.gene85534:CDS
CCTTAGAAACGATATATCAG+AGG 0.678852 3.4:+11633413 MS.gene85534:CDS
TAGCGCTGAAATGTGCAAGA+TGG 0.680693 3.4:-11631453 None:intergenic
ATATAAAATATTAAACCAGG+AGG 0.697517 3.4:+11631415 MS.gene85534:CDS
AGACATTGCTGATTGAAAGG+TGG 0.726306 3.4:-11633481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTCTAATATAGAAA+AGG + chr3.4:11631818-11631837 MS.gene85534:intron 10.0%
!!! AGTATTTTTTATTAATTTCA+TGG + chr3.4:11631610-11631629 MS.gene85534:intron 10.0%
!!! TTTTCTATATTAGAATATTA+TGG - chr3.4:11631819-11631838 None:intergenic 10.0%
!! AAAAATTCTTTATCAACAAT+TGG - chr3.4:11631649-11631668 None:intergenic 15.0%
!! GAAATATAAAATATTAAACC+AGG + chr3.4:11631412-11631431 MS.gene85534:CDS 15.0%
!! AATATAGAAAAGGCAAATAA+AGG + chr3.4:11631828-11631847 MS.gene85534:intron 20.0%
!! ACCTATAAATAGACTTATAT+GGG + chr3.4:11631886-11631905 MS.gene85534:intron 20.0%
!! ATAAAAAAAATGATTACCTG+TGG - chr3.4:11631488-11631507 None:intergenic 20.0%
!! ATATAAAATATTAAACCAGG+AGG + chr3.4:11631415-11631434 MS.gene85534:CDS 20.0%
!! TAAAAAAAATGATTACCTGT+GGG - chr3.4:11631487-11631506 None:intergenic 20.0%
! AAACAAAACATCATTAGACA+TGG + chr3.4:11633251-11633270 MS.gene85534:CDS 25.0%
! AATCGTATAAATTAGACTGA+TGG + chr3.4:11631525-11631544 MS.gene85534:intron 25.0%
! ACCCATATAAGTCTATTTAT+AGG - chr3.4:11631890-11631909 None:intergenic 25.0%
! AGAATATTATGGATGTTTCT+AGG - chr3.4:11631808-11631827 None:intergenic 25.0%
! ATAACAAATATTATGGCAAG+AGG + chr3.4:11632680-11632699 MS.gene85534:intron 25.0%
! CACCTATAAATAGACTTATA+TGG + chr3.4:11631885-11631904 MS.gene85534:intron 25.0%
! CATCTTGAATTACTGTATAA+AGG - chr3.4:11630944-11630963 None:intergenic 25.0%
! CTCAAAACAAATAAACAAAG+AGG + chr3.4:11631377-11631396 MS.gene85534:CDS 25.0%
! GATGCCAATAACAAATATTA+TGG + chr3.4:11632673-11632692 MS.gene85534:intron 25.0%
! GTTATAGAAGAACATATAGT+TGG - chr3.4:11632122-11632141 None:intergenic 25.0%
! TATAAATTAGACTGATGGTT+TGG + chr3.4:11631530-11631549 MS.gene85534:intron 25.0%
! TGCAATGTCAATAATATTGA+AGG + chr3.4:11631942-11631961 MS.gene85534:intron 25.0%
! TTCAAACAAAAAAGCTAAGA+AGG + chr3.4:11632228-11632247 MS.gene85534:intron 25.0%
!! AAGAGTATATTATCAAGTGT+TGG + chr3.4:11633291-11633310 MS.gene85534:CDS 25.0%
!!! AGGTTTTAACTTCATAATCT+CGG - chr3.4:11631057-11631076 None:intergenic 25.0%
!!! CTTGCCATAATATTTGTTAT+TGG - chr3.4:11632680-11632699 None:intergenic 25.0%
!!! TTCTAGAACTAGAATAATCT+AGG - chr3.4:11631854-11631873 None:intergenic 25.0%
AACAAATAAACAAAGAGGTG+CGG + chr3.4:11631382-11631401 MS.gene85534:CDS 30.0%
AATATATCGAAATAAGCTCC+TGG - chr3.4:11633624-11633643 None:intergenic 30.0%
AGATTGTTCCATTAATGTCT+AGG + chr3.4:11631771-11631790 MS.gene85534:intron 30.0%
AGTTAAAACCTTCATTTGCT+TGG + chr3.4:11631066-11631085 MS.gene85534:CDS 30.0%
ATGCAACTAAGATGCAAAAA+TGG + chr3.4:11632551-11632570 MS.gene85534:intron 30.0%
ATTGTTGAAGATTTCTGACA+GGG - chr3.4:11632513-11632532 None:intergenic 30.0%
CAACTTAACCTAGACATTAA+TGG - chr3.4:11631782-11631801 None:intergenic 30.0%
CTCCATTTATATTTATTGCC+TGG - chr3.4:11632362-11632381 None:intergenic 30.0%
CTTGTTAAAGACATCTAACA+AGG - chr3.4:11632578-11632597 None:intergenic 30.0%
GTCAAGTATTCAATAGATTC+CGG - chr3.4:11631281-11631300 None:intergenic 30.0%
GTCCAGGCAATAAATATAAA+TGG + chr3.4:11632357-11632376 MS.gene85534:intron 30.0%
TATTAATTTCATGGTAGCAC+AGG + chr3.4:11631619-11631638 MS.gene85534:intron 30.0%
TCTATCATCTCCAAAATGAA+TGG - chr3.4:11630969-11630988 None:intergenic 30.0%
TGTTATGAATGAACAGTATG+AGG + chr3.4:11631331-11631350 MS.gene85534:CDS 30.0%
TTATTGACATTGCATCTCAA+AGG - chr3.4:11631936-11631955 None:intergenic 30.0%
TTCAAATTATGTGCAAGTGT+GGG - chr3.4:11633348-11633367 None:intergenic 30.0%
TTTCAAATTATGTGCAAGTG+TGG - chr3.4:11633349-11633368 None:intergenic 30.0%
! AGTTTTCGAAATATGCATCA+AGG + chr3.4:11632808-11632827 MS.gene85534:intron 30.0%
! CTTCATTTTGCAAGTCAAAT+TGG + chr3.4:11631218-11631237 MS.gene85534:CDS 30.0%
! GAAAATTACTAGAGTACCTA+AGG + chr3.4:11632607-11632626 MS.gene85534:intron 30.0%
! TAATTTTCTCTTTGCTTGTC+CGG + chr3.4:11631259-11631278 MS.gene85534:CDS 30.0%
! TCAAGATGATCCATTCATTT+TGG + chr3.4:11630956-11630975 MS.gene85534:CDS 30.0%
! TTTAGTTTCCAAGCAAATGA+AGG - chr3.4:11631077-11631096 None:intergenic 30.0%
!! ACCAATTCTACTATTTCTAC+CGG + chr3.4:11633561-11633580 MS.gene85534:CDS 30.0%
!! AGCGTGTTACTTTATATAGT+CGG + chr3.4:11633390-11633409 MS.gene85534:CDS 30.0%
!! ATTTGACTTGCAAAATGAAG+AGG - chr3.4:11631218-11631237 None:intergenic 30.0%
!!! TGTTTTGTTTTCCAAGTTCT+TGG - chr3.4:11633241-11633260 None:intergenic 30.0%
!!! TTTTAACTTCATAATCTCGG+AGG - chr3.4:11631054-11631073 None:intergenic 30.0%
AAAAGCTAAGAAGGCTATAG+AGG + chr3.4:11632237-11632256 MS.gene85534:intron 35.0%
AATCTACTACATGAGTGACA+AGG + chr3.4:11632455-11632474 MS.gene85534:intron 35.0%
AATCTTCAACAATGTCGACA+AGG + chr3.4:11632520-11632539 MS.gene85534:intron 35.0%
ACAAATATTATGGCAAGAGG+TGG + chr3.4:11632683-11632702 MS.gene85534:intron 35.0%
ATAGATGCAGCAATATGCAA+AGG - chr3.4:11631014-11631033 None:intergenic 35.0%
ATGTCTTTAACAAGACCAAC+AGG + chr3.4:11632584-11632603 MS.gene85534:intron 35.0%
ATTCGTGATGAGCATATTGT+AGG - chr3.4:11631995-11632014 None:intergenic 35.0%
ATTGCATCTCAAAGGCTTAA+AGG - chr3.4:11631928-11631947 None:intergenic 35.0%
CATGTAGTAGATTCTTGACA+GGG - chr3.4:11632448-11632467 None:intergenic 35.0%
CATTGTTGAAGATTTCTGAC+AGG - chr3.4:11632514-11632533 None:intergenic 35.0%
CCTCTGATATATCGTTTCTA+AGG - chr3.4:11633416-11633435 None:intergenic 35.0%
CCTTAGAAACGATATATCAG+AGG + chr3.4:11633413-11633432 MS.gene85534:CDS 35.0%
CTATTGAATACTTGACTGTG+AGG + chr3.4:11631285-11631304 MS.gene85534:CDS 35.0%
GCAAAACAACCAGAAAAGTA+TGG + chr3.4:11631130-11631149 MS.gene85534:CDS 35.0%
GCTTGGAAACTAAATCAACA+AGG + chr3.4:11631083-11631102 MS.gene85534:CDS 35.0%
GGTAGAAATAGTAGAATTGG+TGG - chr3.4:11633562-11633581 None:intergenic 35.0%
GTCTATGACTCAAACACAAA+AGG + chr3.4:11632170-11632189 MS.gene85534:intron 35.0%
GTTAGAGTTGAAGGAAGAAA+TGG + chr3.4:11631185-11631204 MS.gene85534:CDS 35.0%
TCATGTAGTAGATTCTTGAC+AGG - chr3.4:11632449-11632468 None:intergenic 35.0%
TCGCTTTGTGAACTTCAATA+AGG + chr3.4:11631157-11631176 MS.gene85534:CDS 35.0%
TGCAAAGGAGTTTCAACAAA+TGG - chr3.4:11630999-11631018 None:intergenic 35.0%
TGTCTTTAACAAGACCAACA+GGG + chr3.4:11632585-11632604 MS.gene85534:intron 35.0%
TTCTTCCTTCAACTCTAACA+AGG - chr3.4:11631184-11631203 None:intergenic 35.0%
TTGCATATTGCTGCATCTAT+GGG + chr3.4:11631014-11631033 MS.gene85534:CDS 35.0%
TTGGAATATATAGAGCGTGA+GGG - chr3.4:11632038-11632057 None:intergenic 35.0%
TTTCGAAATATGCATCAAGG+AGG + chr3.4:11632811-11632830 MS.gene85534:intron 35.0%
TTTGCATATTGCTGCATCTA+TGG + chr3.4:11631013-11631032 MS.gene85534:CDS 35.0%
! AATTACTAGAGTACCTAAGG+AGG + chr3.4:11632610-11632629 MS.gene85534:intron 35.0%
! ACTCTAGTAATTTTCCCTGT+TGG - chr3.4:11632602-11632621 None:intergenic 35.0%
! CAATTTCCGGATAGTTGATA+GGG - chr3.4:11633673-11633692 None:intergenic 35.0%
! CTTAACTTGAGTACAAGCAT+AGG + chr3.4:11632399-11632418 MS.gene85534:intron 35.0%
! CTTTTTCCCTATCAACTATC+CGG + chr3.4:11633664-11633683 MS.gene85534:CDS 35.0%
! TCCTAGTCTTTATCAACTGT+TGG - chr3.4:11633206-11633225 None:intergenic 35.0%
! TTTTGCAAGTCAAATTGGTG+AGG + chr3.4:11631223-11631242 MS.gene85534:CDS 35.0%
! TTTTGCATAGCAAGATGGAT+AGG - chr3.4:11631116-11631135 None:intergenic 35.0%
!! ACTATGAAGAGTATCAATGC+AGG + chr3.4:11632735-11632754 MS.gene85534:intron 35.0%
!! CCAATTCTACTATTTCTACC+GGG + chr3.4:11633562-11633581 MS.gene85534:CDS 35.0%
!! TCCAACAGTTGATAAAGACT+AGG + chr3.4:11633202-11633221 MS.gene85534:intron 35.0%
!! TTTGTTATTGGCATCCTTGT+CGG - chr3.4:11632668-11632687 None:intergenic 35.0%
AAATTTGTGCGCCAAGAACT+TGG + chr3.4:11633227-11633246 MS.gene85534:CDS 40.0%
AAGGACCTTGTTAGAGTTGA+AGG + chr3.4:11631176-11631195 MS.gene85534:CDS 40.0%
ATGGGGAAATACTGGGAAAT+CGG + chr3.4:11633593-11633612 MS.gene85534:CDS 40.0%
CCAATTTCCGGATAGTTGAT+AGG - chr3.4:11633674-11633693 None:intergenic 40.0%
CCCGGTAGAAATAGTAGAAT+TGG - chr3.4:11633565-11633584 None:intergenic 40.0%
CCTATCAACTATCCGGAAAT+TGG + chr3.4:11633671-11633690 MS.gene85534:CDS 40.0%
CGCTCTATATATTCCAACAG+TGG + chr3.4:11632041-11632060 MS.gene85534:intron 40.0%
CTTCAGCTGCAACTTTCAAT+CGG - chr3.4:11630905-11630924 None:intergenic 40.0%
GAGGAGACACATTAGTGATA+TGG - chr3.4:11631973-11631992 None:intergenic 40.0%
GGAGTTTATGGGGAAATACT+GGG + chr3.4:11633586-11633605 MS.gene85534:CDS 40.0%
GTACTCAAGTTAAGCATCAG+AGG - chr3.4:11632393-11632412 None:intergenic 40.0%
GTTGGAATATATAGAGCGTG+AGG - chr3.4:11632039-11632058 None:intergenic 40.0%
TCATAATCTCGGAGGCAAAT+TGG - chr3.4:11631046-11631065 None:intergenic 40.0%
TCTTGTTGAAGACTTCTGCA+TGG - chr3.4:11632645-11632664 None:intergenic 40.0%
TGGAGTTTATGGGGAAATAC+TGG + chr3.4:11633585-11633604 MS.gene85534:CDS 40.0%
TTAAACCAGGAGGATGAGAA+TGG + chr3.4:11631425-11631444 MS.gene85534:CDS 40.0%
TTAACCTGATAAACTCCACC+TGG - chr3.4:11633510-11633529 None:intergenic 40.0%
! AGACATTGCTGATTGAAAGG+TGG - chr3.4:11633484-11633503 None:intergenic 40.0%
! AGCGAGTAACCATACTTTTC+TGG - chr3.4:11631142-11631161 None:intergenic 40.0%
! GACTTGAACTTTAGAGGATC+GGG - chr3.4:11632282-11632301 None:intergenic 40.0%
! GGACTTGAACTTTAGAGGAT+CGG - chr3.4:11632283-11632302 None:intergenic 40.0%
! TGGAGACATTGCTGATTGAA+AGG - chr3.4:11633487-11633506 None:intergenic 40.0%
!! AACATATAGTTGGTGACACG+AGG - chr3.4:11632112-11632131 None:intergenic 40.0%
!! ATGAAGAGTATCAATGCAGG+AGG + chr3.4:11632738-11632757 MS.gene85534:intron 40.0%
!! ATTCTACTATTTCTACCGGG+TGG + chr3.4:11633565-11633584 MS.gene85534:CDS 40.0%
!! GGTTGTTTTGCATAGCAAGA+TGG - chr3.4:11631121-11631140 None:intergenic 40.0%
AGAAGGCTATAGAGGAGTTC+AGG + chr3.4:11632245-11632264 MS.gene85534:intron 45.0%
AGTCTTCAACAAGACCGACA+AGG + chr3.4:11632651-11632670 MS.gene85534:intron 45.0%
AGTTAAGCATCAGAGGTCAC+AGG - chr3.4:11632386-11632405 None:intergenic 45.0%
ATGGACCATTCTTCCTCCTT+AGG - chr3.4:11632626-11632645 None:intergenic 45.0%
ATTTCCCCATAAACTCCACC+CGG - chr3.4:11633583-11633602 None:intergenic 45.0%
CATAGGTCTTCGACATGAGT+CGG - chr3.4:11632304-11632323 None:intergenic 45.0%
CGTGATGAGCATATTGTAGG+AGG - chr3.4:11631992-11632011 None:intergenic 45.0%
GAGTACCTAAGGAGGAAGAA+TGG + chr3.4:11632618-11632637 MS.gene85534:intron 45.0%
GAGTCGGACTTGAACTTTAG+AGG - chr3.4:11632288-11632307 None:intergenic 45.0%
TCAAACAGAGTAGAGCCTTG+TGG - chr3.4:11632207-11632226 None:intergenic 45.0%
TTCGAATAGAGCACAAGTCC+AGG + chr3.4:11632341-11632360 MS.gene85534:intron 45.0%
TTCTACCGGGTGGAGTTTAT+GGG + chr3.4:11633575-11633594 MS.gene85534:CDS 45.0%
TTGAAAGTTGCAGCTGAAGC+AGG + chr3.4:11630906-11630925 MS.gene85534:CDS 45.0%
TTTCTACCGGGTGGAGTTTA+TGG + chr3.4:11633574-11633593 MS.gene85534:CDS 45.0%
! AAGGAGTACATGTAGCCACA+AGG + chr3.4:11632189-11632208 MS.gene85534:intron 45.0%
! CTTGAGTGTCTTTTCGCCAT+AGG - chr3.4:11632321-11632340 None:intergenic 45.0%
! TAGCGCTGAAATGTGCAAGA+TGG - chr3.4:11631456-11631475 None:intergenic 45.0%
!! TCAAGTGTTGGAGCAAAACC+TGG + chr3.4:11633303-11633322 MS.gene85534:CDS 45.0%
ACCTGATAAACTCCACCTGG+TGG - chr3.4:11633507-11633526 None:intergenic 50.0%
AGCTGCGTTCGGTCATTAAC+AGG + chr3.4:11632070-11632089 MS.gene85534:intron 50.0%
AGTGGTATCAGAGCTGCGTT+CGG + chr3.4:11632059-11632078 MS.gene85534:intron 50.0%
ATGTGCAAGTGTGGGTGCAT+TGG - chr3.4:11633340-11633359 None:intergenic 50.0%
CAATCAGCAATGTCTCCACC+AGG + chr3.4:11633489-11633508 MS.gene85534:CDS 50.0%
CGACTCATGTCGAAGACCTA+TGG + chr3.4:11632302-11632321 MS.gene85534:intron 50.0%
GCTGCGTTCGGTCATTAACA+GGG + chr3.4:11632071-11632090 MS.gene85534:intron 50.0%
TCCACCAGGTGGAGTTTATC+AGG + chr3.4:11633503-11633522 MS.gene85534:CDS 50.0%
TCTACCGGGTGGAGTTTATG+GGG + chr3.4:11633576-11633595 MS.gene85534:CDS 50.0%
TGTTGCCATTCTCATCCTCC+TGG - chr3.4:11631433-11631452 None:intergenic 50.0%
TGTTGGAGCAAAACCTGGCT+CGG + chr3.4:11633308-11633327 MS.gene85534:CDS 50.0%
! CTTTAGAGGATCGGGCTGTT+AGG - chr3.4:11632274-11632293 None:intergenic 50.0%
ACTGGGAAATCGGTCTTGCC+AGG + chr3.4:11633603-11633622 MS.gene85534:CDS 55.0%
ATAGAGCGTGAGGGAGCTAG+TGG - chr3.4:11632029-11632048 None:intergenic 55.0%
CAGAGGAGCAACGCAACACT+TGG + chr3.4:11633430-11633449 MS.gene85534:CDS 55.0%
GAGGCCCTTCAAGTGCTTCT+CGG + chr3.4:11631350-11631369 MS.gene85534:CDS 55.0%
TCAGCAATGTCTCCACCAGG+TGG + chr3.4:11633492-11633511 MS.gene85534:CDS 55.0%
! CGCAGCTCTGATACCACTGT+TGG - chr3.4:11632057-11632076 None:intergenic 55.0%
!! CCAGCCGAGAAGCACTTGAA+GGG - chr3.4:11631357-11631376 None:intergenic 55.0%
AGCGCTAAGTAGCGACCCAC+AGG + chr3.4:11631469-11631488 MS.gene85534:CDS 60.0%
AGCGTGAGGGAGCTAGTGGT+AGG - chr3.4:11632025-11632044 None:intergenic 60.0%
CCCTTCAAGTGCTTCTCGGC+TGG + chr3.4:11631354-11631373 MS.gene85534:CDS 60.0%
GCGTGAGGGAGCTAGTGGTA+GGG - chr3.4:11632024-11632043 None:intergenic 60.0%
! GCATTGGTGACTTCCGAGCC+AGG - chr3.4:11633324-11633343 None:intergenic 60.0%
!! GCCAGCCGAGAAGCACTTGA+AGG - chr3.4:11631358-11631377 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 11630879 11633701 11630879 ID=MS.gene85534
chr3.4 mRNA 11630879 11633701 11630879 ID=MS.gene85534.t1;Parent=MS.gene85534
chr3.4 exon 11630879 11631490 11630879 ID=MS.gene85534.t1.exon1;Parent=MS.gene85534.t1
chr3.4 CDS 11630879 11631490 11630879 ID=cds.MS.gene85534.t1;Parent=MS.gene85534.t1
chr3.4 exon 11633219 11633701 11633219 ID=MS.gene85534.t1.exon2;Parent=MS.gene85534.t1
chr3.4 CDS 11633219 11633701 11633219 ID=cds.MS.gene85534.t1;Parent=MS.gene85534.t1
Gene Sequence

>MS.gene85534

ATGAATAGCACAAATAATGGTGACCGATTGAAAGTTGCAGCTGAAGCAGGTGATATAGATCTCCTTTATACAGTAATTCAAGATGATCCATTCATTTTGGAGATGATAGATTTAATACCATTTGTTGAAACTCCTTTGCATATTGCTGCATCTATGGGTCATCTCCAATTTGCCTCCGAGATTATGAAGTTAAAACCTTCATTTGCTTGGAAACTAAATCAACAAGGATTCAGTCCTATCCATCTTGCTATGCAAAACAACCAGAAAAGTATGGTTACTCGCTTTGTGAACTTCAATAAGGACCTTGTTAGAGTTGAAGGAAGAAATGGCATAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAGGTTGAACTTTTAGCTAATTTTCTCTTTGCTTGTCCGGAATCTATTGAATACTTGACTGTGAGGTTTGAGACTGCATTGCATATTGCTGTTATGAATGAACAGTATGAGGCCCTTCAAGTGCTTCTCGGCTGGCTCAAAACAAATAAACAAAGAGGTGCGGATTTGCTGAAATATAAAATATTAAACCAGGAGGATGAGAATGGCAACACCATCTTGCACATTTCAGCGCTAAGTAGCGACCCACAGGTAATCATTTTTTTTATTTGAAGAACACGAAAGAAATCGTATAAATTAGACTGATGGTTTGGATCTAGCACACTAAATTTGTAGATTTTTAGTTGCTAATTTGAATGATCTCTAACAACAGTATTTTTTATTAATTTCATGGTAGCACAGGCGCTCCAATTGTTGATAAAGAATTTTTGTCAAAAAAATAAATTGTTGTTGAAATATGATGCACATTTCTAGATATTTCTAGAATACATTAGAGAAAACTAGAATAAGCTTAAAATTATTATATATTTCTAGATTGTTCCATTAATGTCTAGGTTAAGTTGTAGCCTAGAAACATCCATAATATTCTAATATAGAAAAGGCAAATAAAGGCCTAGATTATTCTAGTTCTAGAAACATCTATAAGCACCTATAAATAGACTTATATGGGTGCAATTGTATTCAAGCCTTTAAGCCTTTGAGATGCAATGTCAATAATATTGAAGGCTTCACCATATCACTAATGTGTCTCCTCCTACAATATGCTCATCACGAATGTGTGTCCCTACCACTAGCTCCCTCACGCTCTATATATTCCAACAGTGGTATCAGAGCTGCGTTCGGTCATTAACAGGGCGTAGCAAAATATGACCTCGTGTCACCAACTATATGTTCTTCTATAACATGAATTCTACAAAAGTAGAAATTCTCAGTCTATGACTCAAACACAAAAGGAGTACATGTAGCCACAAGGCTCTACTCTGTTTGAGTTCAAACAAAAAAGCTAAGAAGGCTATAGAGGAGTTCAGGTAGCCTAACAGCCCGATCCTCTAAAGTTCAAGTCCGACTCATGTCGAAGACCTATGGCGAAAAGACACTCAAGTTCGAATAGAGCACAAGTCCAGGCAATAAATATAAATGGAGACCTGTGACCTCTGATGCTTAACTTGAGTACAAGCATAGGTAACTACTAGAGCAAGAATGAGTCCCTGTCAAGAATCTACTACATGAGTGACAAGGAGACTCACAAGCAACTATGAACAAGAAATTCTCCCTGTCAGAAATCTTCAACAATGTCGACAAGGAGATTCACATGCAACTAAGATGCAAAAATGGTCCTTGTTAGATGTCTTTAACAAGACCAACAGGGAAAATTACTAGAGTACCTAAGGAGGAAGAATGGTCCATGCAGAAGTCTTCAACAAGACCGACAAGGATGCCAATAACAAATATTATGGCAAGAGGTGGCACAATTTTCTATCATGTCAAGTTGATCAACTATGAAGAGTATCAATGCAGGAGGAGATGATAGCACAAATCTATGTTTGAGCAACTACGTACTACATTTGAAGTTTTCGAAATATGCATCAAGGAGGAGTGTTGAAATATGATGCACATTTCTAGATATTTCTAGAATACATTAGAGAAAACTAGAATATGCTTAAAGTTATTATATATTTCTAGATTGTTCCATTAATGTCTAGGTTAAGTTGTAGCCTAGAAACATCCATAATATTCTAATATAGAAAAGGCAAATAAAGGCCTAGATTATTCTAGTTCTAGAAACATCTATAAGCACCTATAAATAGACTTATATGGGTGCAATTGTATTCAAGCCTTTAAGCCTTTGAGATGCAATGTCAATAATATTGAAGGCTTCACCATATCACTAATGTGTCTCCTCCTACAATATGCTCATCACGAATGTGTGTCCCTACCACTAGCTCCCTCACGCTCTATATATTCCAACAGTTGATAAAGACTAGGATAAATTTGTGCGCCAAGAACTTGGAAAACAAAACATCATTAGACATGGCAGTCACTAGAGAGATCAAGAGTATATTATCAAGTGTTGGAGCAAAACCTGGCTCGGAAGTCACCAATGCACCCACACTTGCACATAATTTGAAATCAAATACTATGTTGATGAGTAGCGTGTTACTTTATATAGTCGGCCTTAGAAACGATATATCAGAGGAGCAACGCAACACTTGGTTGATAGTTGCGACTCTTGTTGCAACTGCCACCTTTCAATCAGCAATGTCTCCACCAGGTGGAGTTTATCAGGTTAATGCTAGTGACAGTAGTTTGAACATCACTTCCACCAATTCTACTATTTCTACCGGGTGGAGTTTATGGGGAAATACTGGGAAATCGGTCTTGCCAGGAGCTTATTTCGATATATTTTTATATTTGAATATGCTTTCTTTTTCCCTATCAACTATCCGGAAATTGGCTCTCTAA

Protein sequence

>MS.gene85534.t1

MNSTNNGDRLKVAAEAGDIDLLYTVIQDDPFILEMIDLIPFVETPLHIAASMGHLQFASEIMKLKPSFAWKLNQQGFSPIHLAMQNNQKSMVTRFVNFNKDLVRVEGRNGITPLHFASQIGEVELLANFLFACPESIEYLTVRFETALHIAVMNEQYEALQVLLGWLKTNKQRGADLLKYKILNQEDENGNTILHISALSSDPQTRINLCAKNLENKTSLDMAVTREIKSILSSVGAKPGSEVTNAPTLAHNLKSNTMLMSSVLLYIVGLRNDISEEQRNTWLIVATLVATATFQSAMSPPGGVYQVNASDSSLNITSTNSTISTGWSLWGNTGKSVLPGAYFDIFLYLNMLSFSLSTIRKLAL