Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51262.t1 | AES77856.1 | 46.3 | 374 | 189 | 3 | 1 | 373 | 1 | 363 | 1.30E-71 | 280.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51262.t1 | Q8GYH5 | 49.7 | 304 | 142 | 4 | 8 | 304 | 4 | 303 | 2.8e-19 | 97.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51262.t1 | G7KSX2 | 46.3 | 374 | 189 | 3 | 1 | 373 | 1 | 363 | 9.1e-72 | 280.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51262.t1 | MTR_8g039620 | 68.529 | 340 | 104 | 3 | 5 | 342 | 10 | 348 | 1.17e-162 | 463 |
MS.gene51262.t1 | MTR_8g072510 | 68.895 | 344 | 102 | 4 | 1 | 342 | 1 | 341 | 9.47e-160 | 456 |
MS.gene51262.t1 | MTR_3g016210 | 62.274 | 387 | 124 | 6 | 3 | 373 | 4 | 384 | 2.16e-158 | 453 |
MS.gene51262.t1 | MTR_7g021090 | 62.234 | 376 | 126 | 6 | 1 | 373 | 1 | 363 | 1.26e-155 | 444 |
MS.gene51262.t1 | MTR_8g062410 | 65.689 | 341 | 104 | 5 | 3 | 340 | 4 | 334 | 6.53e-147 | 424 |
MS.gene51262.t1 | MTR_1g059930 | 62.429 | 354 | 126 | 4 | 1 | 349 | 1 | 352 | 7.40e-146 | 421 |
MS.gene51262.t1 | MTR_8g073260 | 60.399 | 351 | 133 | 3 | 1 | 349 | 1 | 347 | 1.71e-144 | 418 |
MS.gene51262.t1 | MTR_8g069880 | 64.688 | 337 | 115 | 3 | 5 | 340 | 3 | 336 | 3.65e-142 | 412 |
MS.gene51262.t1 | MTR_7g451420 | 65.204 | 319 | 107 | 3 | 1 | 318 | 1 | 316 | 2.36e-137 | 395 |
MS.gene51262.t1 | MTR_8g068990 | 59.593 | 344 | 118 | 5 | 4 | 343 | 7 | 333 | 5.51e-134 | 391 |
MS.gene51262.t1 | MTR_8g066670 | 61.919 | 344 | 125 | 4 | 1 | 342 | 1067 | 1406 | 1.12e-125 | 395 |
MS.gene51262.t1 | MTR_8g467780 | 57.593 | 349 | 135 | 4 | 7 | 344 | 9 | 355 | 5.97e-125 | 368 |
MS.gene51262.t1 | MTR_8g040930 | 63.729 | 295 | 100 | 4 | 52 | 342 | 2 | 293 | 2.08e-123 | 362 |
MS.gene51262.t1 | MTR_8g041240 | 63.729 | 295 | 100 | 4 | 52 | 342 | 2 | 293 | 2.08e-123 | 362 |
MS.gene51262.t1 | MTR_3g105650 | 51.118 | 313 | 141 | 4 | 7 | 311 | 3 | 311 | 7.54e-102 | 308 |
MS.gene51262.t1 | MTR_8g073275 | 43.700 | 373 | 130 | 9 | 52 | 357 | 2 | 361 | 7.97e-82 | 258 |
MS.gene51262.t1 | MTR_1g069110 | 28.182 | 330 | 196 | 9 | 9 | 326 | 18 | 318 | 8.97e-30 | 119 |
MS.gene51262.t1 | MTR_7g099580 | 25.796 | 314 | 182 | 6 | 7 | 316 | 10 | 276 | 2.83e-26 | 108 |
MS.gene51262.t1 | MTR_2g101320 | 25.414 | 362 | 176 | 8 | 37 | 314 | 134 | 485 | 4.28e-23 | 101 |
MS.gene51262.t1 | MTR_7g099570 | 28.169 | 284 | 155 | 6 | 9 | 287 | 9 | 248 | 3.70e-21 | 95.9 |
MS.gene51262.t1 | MTR_1g115575 | 26.331 | 338 | 181 | 10 | 12 | 311 | 138 | 445 | 1.07e-18 | 88.2 |
MS.gene51262.t1 | MTR_7g117620 | 25.260 | 289 | 180 | 7 | 44 | 310 | 119 | 393 | 1.29e-16 | 82.0 |
MS.gene51262.t1 | MTR_2g101310 | 27.273 | 231 | 144 | 6 | 40 | 256 | 137 | 357 | 3.39e-15 | 77.4 |
MS.gene51262.t1 | MTR_2g101310 | 27.234 | 235 | 147 | 6 | 40 | 260 | 137 | 361 | 6.36e-15 | 76.6 |
MS.gene51262.t1 | MTR_1g032100 | 23.793 | 290 | 186 | 5 | 44 | 310 | 94 | 371 | 2.82e-14 | 74.7 |
MS.gene51262.t1 | MTR_8g105260 | 24.138 | 290 | 185 | 6 | 44 | 310 | 101 | 378 | 9.36e-14 | 73.2 |
MS.gene51262.t1 | MTR_7g100390 | 23.636 | 385 | 229 | 12 | 12 | 368 | 56 | 403 | 2.04e-13 | 72.0 |
MS.gene51262.t1 | MTR_7g100430 | 24.654 | 361 | 207 | 12 | 42 | 353 | 124 | 468 | 2.65e-13 | 71.6 |
MS.gene51262.t1 | MTR_2g096190 | 24.232 | 293 | 178 | 7 | 45 | 310 | 105 | 380 | 3.63e-13 | 71.2 |
MS.gene51262.t1 | MTR_4g062100 | 23.958 | 288 | 185 | 6 | 45 | 310 | 109 | 384 | 9.71e-12 | 67.0 |
MS.gene51262.t1 | MTR_5g085830 | 22.419 | 339 | 215 | 10 | 9 | 310 | 247 | 574 | 4.10e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51262.t1 | AT4G10720 | 38.046 | 389 | 218 | 7 | 8 | 380 | 4 | 385 | 4.81e-78 | 248 |
MS.gene51262.t1 | AT4G10720 | 40.683 | 322 | 181 | 3 | 8 | 321 | 4 | 323 | 5.95e-77 | 244 |
MS.gene51262.t1 | AT1G14480 | 37.222 | 360 | 207 | 6 | 8 | 351 | 4 | 360 | 4.17e-73 | 234 |
MS.gene51262.t1 | AT5G54620 | 36.896 | 393 | 221 | 8 | 7 | 387 | 3 | 380 | 8.01e-72 | 231 |
MS.gene51262.t1 | AT1G14500 | 34.500 | 400 | 235 | 5 | 8 | 384 | 4 | 399 | 1.34e-69 | 225 |
MS.gene51262.t1 | AT5G15500 | 40.385 | 312 | 176 | 5 | 9 | 312 | 6 | 315 | 2.57e-69 | 225 |
MS.gene51262.t1 | AT5G54610 | 37.459 | 307 | 175 | 6 | 8 | 304 | 4 | 303 | 1.23e-63 | 209 |
MS.gene51262.t1 | AT1G14480 | 34.857 | 350 | 186 | 7 | 8 | 351 | 4 | 317 | 1.65e-55 | 187 |
MS.gene51262.t1 | AT5G15500 | 36.493 | 211 | 124 | 5 | 110 | 312 | 1 | 209 | 7.09e-31 | 121 |
MS.gene51262.t1 | AT5G51160 | 29.044 | 272 | 167 | 5 | 62 | 314 | 34 | 298 | 5.06e-29 | 117 |
MS.gene51262.t1 | AT1G10340 | 28.097 | 331 | 189 | 9 | 79 | 378 | 171 | 483 | 1.75e-19 | 90.5 |
MS.gene51262.t1 | AT1G10340 | 28.146 | 302 | 170 | 8 | 79 | 349 | 175 | 460 | 1.76e-19 | 90.5 |
MS.gene51262.t1 | AT2G24600 | 27.778 | 306 | 174 | 10 | 79 | 353 | 175 | 464 | 5.74e-19 | 89.4 |
MS.gene51262.t1 | AT2G24600 | 27.778 | 306 | 174 | 10 | 79 | 353 | 175 | 464 | 5.74e-19 | 89.4 |
MS.gene51262.t1 | AT5G54700 | 27.143 | 280 | 153 | 8 | 100 | 376 | 22 | 253 | 2.58e-18 | 85.9 |
MS.gene51262.t1 | AT1G05640 | 27.019 | 322 | 190 | 10 | 21 | 310 | 157 | 465 | 3.96e-18 | 86.7 |
MS.gene51262.t1 | AT1G34050 | 26.103 | 272 | 157 | 6 | 65 | 314 | 174 | 423 | 4.82e-18 | 86.3 |
MS.gene51262.t1 | AT2G24600 | 27.820 | 266 | 154 | 8 | 79 | 314 | 175 | 432 | 6.01e-18 | 85.9 |
MS.gene51262.t1 | AT2G24600 | 27.820 | 266 | 154 | 8 | 79 | 314 | 175 | 432 | 6.01e-18 | 85.9 |
MS.gene51262.t1 | AT3G09550 | 27.246 | 334 | 183 | 11 | 12 | 311 | 150 | 457 | 7.71e-18 | 85.9 |
MS.gene51262.t1 | AT3G09550 | 27.246 | 334 | 183 | 11 | 12 | 311 | 150 | 457 | 7.71e-18 | 85.9 |
MS.gene51262.t1 | AT3G09550 | 27.246 | 334 | 183 | 11 | 12 | 311 | 157 | 464 | 7.78e-18 | 85.9 |
MS.gene51262.t1 | AT5G54710 | 27.636 | 275 | 164 | 8 | 65 | 314 | 232 | 496 | 1.39e-17 | 85.1 |
MS.gene51262.t1 | AT5G54710 | 27.636 | 275 | 164 | 8 | 65 | 314 | 187 | 451 | 1.40e-17 | 85.1 |
MS.gene51262.t1 | AT5G54700 | 24.662 | 296 | 152 | 7 | 24 | 318 | 20 | 245 | 1.64e-16 | 81.3 |
MS.gene51262.t1 | AT2G31820 | 25.000 | 384 | 215 | 15 | 21 | 368 | 193 | 539 | 1.91e-16 | 81.6 |
MS.gene51262.t1 | AT4G03500 | 26.877 | 253 | 147 | 7 | 71 | 311 | 276 | 502 | 2.57e-16 | 81.3 |
MS.gene51262.t1 | AT4G03500 | 26.877 | 253 | 147 | 7 | 71 | 311 | 253 | 479 | 2.68e-16 | 81.3 |
MS.gene51262.t1 | AT4G03500 | 26.877 | 253 | 147 | 7 | 71 | 311 | 253 | 479 | 2.68e-16 | 81.3 |
MS.gene51262.t1 | AT2G01680 | 22.788 | 373 | 228 | 10 | 14 | 349 | 57 | 406 | 4.80e-16 | 80.1 |
MS.gene51262.t1 | AT3G12360 | 26.113 | 337 | 193 | 10 | 44 | 353 | 155 | 462 | 7.92e-16 | 79.7 |
MS.gene51262.t1 | AT3G12360 | 26.113 | 337 | 193 | 10 | 44 | 353 | 167 | 474 | 8.58e-16 | 79.3 |
MS.gene51262.t1 | AT4G03460 | 28.959 | 221 | 120 | 8 | 102 | 311 | 292 | 486 | 1.03e-14 | 76.3 |
MS.gene51262.t1 | AT4G03460 | 28.959 | 221 | 120 | 8 | 102 | 311 | 260 | 454 | 1.19e-14 | 75.9 |
MS.gene51262.t1 | AT1G07710 | 24.923 | 325 | 206 | 8 | 9 | 310 | 70 | 379 | 2.43e-13 | 72.0 |
MS.gene51262.t1 | AT1G07710 | 24.923 | 325 | 206 | 8 | 9 | 310 | 70 | 379 | 2.43e-13 | 72.0 |
MS.gene51262.t1 | AT5G02620 | 23.881 | 335 | 201 | 10 | 9 | 310 | 60 | 373 | 8.34e-13 | 70.1 |
MS.gene51262.t1 | AT5G02620 | 23.881 | 335 | 201 | 10 | 9 | 310 | 60 | 373 | 8.34e-13 | 70.1 |
MS.gene51262.t1 | AT5G02620 | 23.881 | 335 | 201 | 10 | 9 | 310 | 60 | 373 | 8.34e-13 | 70.1 |
MS.gene51262.t1 | AT5G02620 | 23.446 | 354 | 202 | 10 | 9 | 310 | 60 | 396 | 3.75e-12 | 68.2 |
MS.gene51262.t1 | AT5G02620 | 23.446 | 354 | 202 | 10 | 9 | 310 | 60 | 396 | 3.75e-12 | 68.2 |
MS.gene51262.t1 | AT5G50140 | 25.366 | 205 | 127 | 5 | 40 | 228 | 26 | 220 | 3.82e-11 | 65.1 |
MS.gene51262.t1 | AT5G60070 | 24.850 | 334 | 199 | 11 | 9 | 310 | 77 | 390 | 5.26e-11 | 64.7 |
Find 68 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACATTGTTGCCAGACAATT+TGG | 0.246881 | 6.3:-76935486 | None:intergenic |
TCAAACATGAACACATATAA+TGG | 0.259295 | 6.3:+76933288 | None:intergenic |
TCATAATTTCAGTGGCAAAT+TGG | 0.275256 | 6.3:-76933455 | None:intergenic |
CTGAAAGCTGCAGCTGAATC+AGG | 0.329052 | 6.3:+76933318 | MS.gene51262:CDS |
TTTACACATCGCTGCATCTT+GGG | 0.336029 | 6.3:+76933425 | MS.gene51262:CDS |
ACGGATTTCCCAGCATTTCC+TGG | 0.345494 | 6.3:-76935154 | None:intergenic |
AAAGAACTTGTTAAAGTTCA+AGG | 0.348526 | 6.3:+76933588 | MS.gene51262:CDS |
CAAACATGAACACATATAAT+GGG | 0.366318 | 6.3:+76933289 | None:intergenic |
GGGGCTCACTGTTGATTGAT+AGG | 0.369452 | 6.3:-76935056 | None:intergenic |
CAGGCCCTTCAAGTACTTGT+TGG | 0.375977 | 6.3:+76933762 | MS.gene51262:CDS |
CTGTTTCCTTTATTGTGTTA+CGG | 0.390295 | 6.3:+76935411 | MS.gene51262:CDS |
CTTTACACATCGCTGCATCT+TGG | 0.395215 | 6.3:+76933424 | MS.gene51262:CDS |
ATCCATCTTGCTATGCAAAA+AGG | 0.399595 | 6.3:+76933528 | MS.gene51262:CDS |
ACCATTGGTGCCAAATTGTC+TGG | 0.404788 | 6.3:+76935476 | MS.gene51262:CDS |
CGTTAAGAATGATCAGTTCC+AGG | 0.406539 | 6.3:+76933743 | MS.gene51262:CDS |
GTCAAGAATTCAATGGATTC+CGG | 0.407639 | 6.3:-76933690 | None:intergenic |
CCCTTCAAGTACTTGTTGGT+TGG | 0.419850 | 6.3:+76933766 | MS.gene51262:CDS |
ACACCACCGTAACACAATAA+AGG | 0.420453 | 6.3:-76935417 | None:intergenic |
AAGCTTTCTCTTTGCTTGTC+CGG | 0.429085 | 6.3:+76933671 | MS.gene51262:CDS |
TCTTGGAAGCTAAATGTTGA+AGG | 0.439916 | 6.3:+76933495 | MS.gene51262:CDS |
ATTGTTACCCCAGGAAATGC+TGG | 0.447046 | 6.3:+76935145 | MS.gene51262:CDS |
TGTAAAGGAGTTTCAACAAA+TGG | 0.455867 | 6.3:-76933408 | None:intergenic |
GCCAGACAATTTGGCACCAA+TGG | 0.456819 | 6.3:-76935477 | None:intergenic |
TGTAGCACAGGCTCGATTGT+TGG | 0.459562 | 6.3:+76934757 | MS.gene51262:intron |
CGGATTTCCCAGCATTTCCT+GGG | 0.461411 | 6.3:-76935153 | None:intergenic |
CTGGAACTGATCATTCTTAA+CGG | 0.463525 | 6.3:-76933742 | None:intergenic |
TCTCACAGTCAAGAATTCAA+TGG | 0.466611 | 6.3:-76933697 | None:intergenic |
TTTAGCTTCCAAGAAAATGA+AGG | 0.469976 | 6.3:-76933486 | None:intergenic |
AAGAAAATATTATTAAATGT+TGG | 0.492021 | 6.3:+76934857 | MS.gene51262:CDS |
CAAGAGAGGTGCAAAAGAGC+TGG | 0.493192 | 6.3:+76933803 | MS.gene51262:CDS |
CATTAGAAGAAATATATTAG+AGG | 0.494104 | 6.3:+76934985 | MS.gene51262:CDS |
AGAATTAATAAGTGAACCAC+AGG | 0.512346 | 6.3:+76933884 | MS.gene51262:CDS |
AAAGACTGTGATAGATTTGA+CGG | 0.526302 | 6.3:+76934781 | MS.gene51262:CDS |
GCCAACCAACAAGTACTTGA+AGG | 0.527792 | 6.3:-76933767 | None:intergenic |
TGTGGTGGTTTATATCATGA+AGG | 0.532024 | 6.3:-76935943 | None:intergenic |
CAAGATGCAGCGATGTGTAA+AGG | 0.533025 | 6.3:-76933423 | None:intergenic |
GTTAAAGTTCAAGGAAGAGA+AGG | 0.535588 | 6.3:+76933597 | MS.gene51262:CDS |
ATTTGACTTGCAAAATGAAG+AGG | 0.542519 | 6.3:-76933627 | None:intergenic |
GGTAACAATAGTATGATTTG+AGG | 0.546324 | 6.3:-76935131 | None:intergenic |
TTAGACATTGCAACTACTGC+AGG | 0.546899 | 6.3:+76934830 | MS.gene51262:CDS |
CAACAAGTACTTGAAGGGCC+TGG | 0.547051 | 6.3:-76933761 | None:intergenic |
TTCGAAAGCTGTGTATGTCT+CGG | 0.547356 | 6.3:+76935449 | MS.gene51262:CDS |
GTATCACTGACTTCTGAGGC+AGG | 0.552340 | 6.3:-76934887 | None:intergenic |
TTTCAACATCATAATTTCAG+TGG | 0.552567 | 6.3:-76933463 | None:intergenic |
CTTAATCTTAGTCTATCTGC+AGG | 0.553505 | 6.3:-76934917 | None:intergenic |
GTGGTGGTTTATATCATGAA+GGG | 0.558439 | 6.3:-76935942 | None:intergenic |
TTTGCATAGCAAGATGGATG+GGG | 0.559583 | 6.3:-76933524 | None:intergenic |
TTACACATCGCTGCATCTTG+GGG | 0.560081 | 6.3:+76933426 | MS.gene51262:CDS |
CTAAATCAGAAGGATGAGGC+AGG | 0.569601 | 6.3:+76933837 | MS.gene51262:CDS |
AGAGAAAATACTAAATCAGA+AGG | 0.570719 | 6.3:+76933827 | MS.gene51262:CDS |
TTAGCCTGATAAACTCCACC+AGG | 0.571654 | 6.3:-76935079 | None:intergenic |
TAGAGGAGCAACGTAACACT+TGG | 0.572878 | 6.3:+76935002 | MS.gene51262:CDS |
AATACTAAATCAGAAGGATG+AGG | 0.578779 | 6.3:+76933833 | MS.gene51262:CDS |
GTATGTCTCGGTTAAACCAT+TGG | 0.587969 | 6.3:+76935461 | MS.gene51262:CDS |
AATCATACTATTGTTACCCC+AGG | 0.588167 | 6.3:+76935136 | MS.gene51262:CDS |
TTGTTACCCCAGGAAATGCT+GGG | 0.594058 | 6.3:+76935146 | MS.gene51262:CDS |
GAGACATACACAGCTTTCGA+AGG | 0.608419 | 6.3:-76935447 | None:intergenic |
CCAACCAACAAGTACTTGAA+GGG | 0.616021 | 6.3:-76933766 | None:intergenic |
GCCTGATAAACTCCACCAGG+GGG | 0.647531 | 6.3:-76935076 | None:intergenic |
GCGAGTATCACTGACTTCTG+AGG | 0.648583 | 6.3:-76934891 | None:intergenic |
AGACATACACAGCTTTCGAA+GGG | 0.657295 | 6.3:-76935446 | None:intergenic |
AAACATGAACACATATAATG+GGG | 0.659412 | 6.3:+76933290 | None:intergenic |
AGTAGTTGCAATGTCTAATG+CGG | 0.664859 | 6.3:-76934825 | None:intergenic |
AGCCTGATAAACTCCACCAG+GGG | 0.666206 | 6.3:-76935077 | None:intergenic |
GGATTTCCCAGCATTTCCTG+GGG | 0.671158 | 6.3:-76935152 | None:intergenic |
TAGCCTGATAAACTCCACCA+GGG | 0.691927 | 6.3:-76935078 | None:intergenic |
TTTCCTTTATTGTGTTACGG+TGG | 0.703708 | 6.3:+76935414 | MS.gene51262:CDS |
CCTGATAAACTCCACCAGGG+GGG | 0.741917 | 6.3:-76935075 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAATATTATTAAATGT+TGG | + | chr6.3:76934857-76934876 | MS.gene51262:CDS | 10.0% |
!! | ATTAAAACTTTCAAAACTTA+AGG | + | chr6.3:76934549-76934568 | MS.gene51262:intron | 15.0% |
!! | TAAATTGATGAAAAAAATGA+TGG | - | chr6.3:76935368-76935387 | None:intergenic | 15.0% |
!!! | AAGTTTTGAAAGTTTTAATT+AGG | - | chr6.3:76934548-76934567 | None:intergenic | 15.0% |
!!! | TGTAGTAAAATAATTCATTT+TGG | + | chr6.3:76934151-76934170 | MS.gene51262:intron | 15.0% |
!! | AAAGGACTAAAAGTTATATT+TGG | + | chr6.3:76934598-76934617 | MS.gene51262:intron | 20.0% |
!! | AAGTTTCAAAAGTTTCAAAT+AGG | - | chr6.3:76934488-76934507 | None:intergenic | 20.0% |
!! | CATTAGAAGAAATATATTAG+AGG | + | chr6.3:76934985-76935004 | MS.gene51262:CDS | 20.0% |
!! | GAAATAGTTTATCAACTAAA+AGG | + | chr6.3:76934461-76934480 | MS.gene51262:intron | 20.0% |
!! | TGTTATAATTGATACAAGAA+AGG | - | chr6.3:76935227-76935246 | None:intergenic | 20.0% |
!! | TTCAAAAGTTTCAAACTAAA+AGG | + | chr6.3:76934407-76934426 | MS.gene51262:intron | 20.0% |
!! | TTTAGTCACTATATTTCATA+TGG | + | chr6.3:76934030-76934049 | MS.gene51262:intron | 20.0% |
!!! | ATAATATTTGTCACATTTTC+TGG | - | chr6.3:76934959-76934978 | None:intergenic | 20.0% |
!!! | CATATTTGAAACTTTTGAAA+CGG | + | chr6.3:76934431-76934450 | MS.gene51262:intron | 20.0% |
!!! | TACAAATTGTTTTTTTTCCT+TGG | - | chr6.3:76933989-76934008 | None:intergenic | 20.0% |
!!! | TTGAAACTTTTGAAACATAA+AGG | - | chr6.3:76934341-76934360 | None:intergenic | 20.0% |
!!! | TTGAAACTTTTGAAACTTAA+AGG | + | chr6.3:76934490-76934509 | MS.gene51262:intron | 20.0% |
! | AAATGTGTGACACTTAATAT+AGG | + | chr6.3:76934668-76934687 | MS.gene51262:intron | 25.0% |
! | AATTGTGGTTTGAAAGAAAA+TGG | + | chr6.3:76935632-76935651 | MS.gene51262:intron | 25.0% |
! | AGAGAAAATACTAAATCAGA+AGG | + | chr6.3:76933827-76933846 | MS.gene51262:CDS | 25.0% |
! | ATCAAATTAAAGAGACCTTA+AGG | - | chr6.3:76935785-76935804 | None:intergenic | 25.0% |
! | CAAAAGACAAAAAACATTAC+TGG | - | chr6.3:76935301-76935320 | None:intergenic | 25.0% |
! | CATGAACAAACTCTAATAAA+TGG | + | chr6.3:76934710-76934729 | MS.gene51262:intron | 25.0% |
! | CCATTTCAAAAGTTTCAATT+AGG | + | chr6.3:76934283-76934302 | MS.gene51262:intron | 25.0% |
! | GAAACATAAAGGACTAATTT+AGG | - | chr6.3:76934330-76934349 | None:intergenic | 25.0% |
! | GAAATCATCATTTGACAATA+CGG | - | chr6.3:76935176-76935195 | None:intergenic | 25.0% |
! | GAATATACGTGTATTAATTG+TGG | + | chr6.3:76935617-76935636 | MS.gene51262:intron | 25.0% |
! | GAGTATTATGTCAAACTAAA+AGG | + | chr6.3:76934580-76934599 | MS.gene51262:intron | 25.0% |
! | TCTATATGCTCAAAAATAGA+TGG | - | chr6.3:76933381-76933400 | None:intergenic | 25.0% |
! | TTTCAACATCATAATTTCAG+TGG | - | chr6.3:76933466-76933485 | None:intergenic | 25.0% |
!! | AATTAGAAAATAAAGCACCA+AGG | + | chr6.3:76933969-76933988 | MS.gene51262:intron | 25.0% |
!!! | AAAGAACTTGTTAAAGTTCA+AGG | + | chr6.3:76933588-76933607 | MS.gene51262:CDS | 25.0% |
!!! | AGAAAATGGATTAATCAACA+TGG | + | chr6.3:76935646-76935665 | MS.gene51262:intron | 25.0% |
!!! | CCTAATTGAAACTTTTGAAA+TGG | - | chr6.3:76934286-76934305 | None:intergenic | 25.0% |
!!! | GTGCTTTATTTTCTAATTGA+GGG | - | chr6.3:76933967-76933986 | None:intergenic | 25.0% |
!!! | TGCTTTATTTTCTAATTGAG+GGG | - | chr6.3:76933966-76933985 | None:intergenic | 25.0% |
AAAGACTGTGATAGATTTGA+CGG | + | chr6.3:76934781-76934800 | MS.gene51262:CDS | 30.0% | |
AATACTAAATCAGAAGGATG+AGG | + | chr6.3:76933833-76933852 | MS.gene51262:CDS | 30.0% | |
ACCTATAATCTTCATGTAAG+TGG | + | chr6.3:76935821-76935840 | MS.gene51262:intron | 30.0% | |
ACTTACATGAAGATTATAGG+TGG | - | chr6.3:76935822-76935841 | None:intergenic | 30.0% | |
AGAATTAATAAGTGAACCAC+AGG | + | chr6.3:76933884-76933903 | MS.gene51262:CDS | 30.0% | |
AGGAATTCTGTCAAACTAAA+AGG | - | chr6.3:76934310-76934329 | None:intergenic | 30.0% | |
ATTGCTATCGTTAAACCTTA+AGG | + | chr6.3:76935767-76935786 | MS.gene51262:intron | 30.0% | |
CTCAAAAAAAATTGCAAGAG+AGG | + | chr6.3:76933789-76933808 | MS.gene51262:CDS | 30.0% | |
CTGTTTCCTTTATTGTGTTA+CGG | + | chr6.3:76935411-76935430 | MS.gene51262:CDS | 30.0% | |
GAAACTTAAAGGACTAACTT+GGG | + | chr6.3:76934501-76934520 | MS.gene51262:intron | 30.0% | |
GAAACTTAGAAGACTAACTT+GGG | - | chr6.3:76934390-76934409 | None:intergenic | 30.0% | |
GACAAAAAACATTACTGGAA+TGG | - | chr6.3:76935296-76935315 | None:intergenic | 30.0% | |
GGTAACAATAGTATGATTTG+AGG | - | chr6.3:76935134-76935153 | None:intergenic | 30.0% | |
TAATCTAATGTCATTGCACA+AGG | - | chr6.3:76933913-76933932 | None:intergenic | 30.0% | |
TCATAATTTCAGTGGCAAAT+TGG | - | chr6.3:76933458-76933477 | None:intergenic | 30.0% | |
TCCACTTACATGAAGATTAT+AGG | - | chr6.3:76935825-76935844 | None:intergenic | 30.0% | |
TGAAACTTAAAGGACTAACT+TGG | + | chr6.3:76934500-76934519 | MS.gene51262:intron | 30.0% | |
TGAAACTTAGAAGACTAACT+TGG | - | chr6.3:76934391-76934410 | None:intergenic | 30.0% | |
TGTAAAGGAGTTTCAACAAA+TGG | - | chr6.3:76933411-76933430 | None:intergenic | 30.0% | |
! | ACAACTTTTCTTCATCTTTG+TGG | - | chr6.3:76934121-76934140 | None:intergenic | 30.0% |
! | ACAAGAAAGGAAAGCATATT+CGG | - | chr6.3:76935214-76935233 | None:intergenic | 30.0% |
! | ATACGACGTGATACTTATTT+TGG | + | chr6.3:76934629-76934648 | MS.gene51262:intron | 30.0% |
! | CAACTTTTCTTCATCTTTGT+GGG | - | chr6.3:76934120-76934139 | None:intergenic | 30.0% |
! | CTTCATTTTGCAAGTCAAAT+TGG | + | chr6.3:76933630-76933649 | MS.gene51262:CDS | 30.0% |
! | TGTTGAAACCTTCATTTTCT+TGG | + | chr6.3:76933478-76933497 | MS.gene51262:CDS | 30.0% |
! | TTTAGCTTCCAAGAAAATGA+AGG | - | chr6.3:76933489-76933508 | None:intergenic | 30.0% |
!! | ATTTGACTTGCAAAATGAAG+AGG | - | chr6.3:76933630-76933649 | None:intergenic | 30.0% |
!!! | GGTGCTTTATTTTCTAATTG+AGG | - | chr6.3:76933968-76933987 | None:intergenic | 30.0% |
AATCATACTATTGTTACCCC+AGG | + | chr6.3:76935136-76935155 | MS.gene51262:CDS | 35.0% | |
AGTAGTTGCAATGTCTAATG+CGG | - | chr6.3:76934828-76934847 | None:intergenic | 35.0% | |
ATATTATGTCTAACCCCATC+TGG | + | chr6.3:76935247-76935266 | MS.gene51262:intron | 35.0% | |
ATGATGGCATCTACATTTGT+AGG | - | chr6.3:76935352-76935371 | None:intergenic | 35.0% | |
CTGGAACTGATCATTCTTAA+CGG | - | chr6.3:76933745-76933764 | None:intergenic | 35.0% | |
CTGGAATGGACATTAATAGA+CGG | - | chr6.3:76935282-76935301 | None:intergenic | 35.0% | |
CTTAATCTTAGTCTATCTGC+AGG | - | chr6.3:76934920-76934939 | None:intergenic | 35.0% | |
GACACTTAATATAGGATGGA+GGG | + | chr6.3:76934676-76934695 | MS.gene51262:intron | 35.0% | |
GCAAAAAGGTCAAACAATGA+TGG | + | chr6.3:76933542-76933561 | MS.gene51262:CDS | 35.0% | |
GGGAATTCTGTCAAACTAAA+AGG | + | chr6.3:76934521-76934540 | MS.gene51262:intron | 35.0% | |
GTGTGACACTTAATATAGGA+TGG | + | chr6.3:76934672-76934691 | MS.gene51262:intron | 35.0% | |
GTTAAAGTTCAAGGAAGAGA+AGG | + | chr6.3:76933597-76933616 | MS.gene51262:CDS | 35.0% | |
TATTATGTCTAACCCCATCT+GGG | + | chr6.3:76935248-76935267 | MS.gene51262:intron | 35.0% | |
TCATGATTACTTTGTAGCAC+AGG | + | chr6.3:76934745-76934764 | MS.gene51262:intron | 35.0% | |
TCTCACAGTCAAGAATTCAA+TGG | - | chr6.3:76933700-76933719 | None:intergenic | 35.0% | |
TCTTGGAAGCTAAATGTTGA+AGG | + | chr6.3:76933495-76933514 | MS.gene51262:CDS | 35.0% | |
TGACACTTAATATAGGATGG+AGG | + | chr6.3:76934675-76934694 | MS.gene51262:intron | 35.0% | |
TGATGGCATCTACATTTGTA+GGG | - | chr6.3:76935351-76935370 | None:intergenic | 35.0% | |
TTAATCAACATGGTGTGTGA+TGG | + | chr6.3:76935656-76935675 | MS.gene51262:intron | 35.0% | |
TTTCCTTTATTGTGTTACGG+TGG | + | chr6.3:76935414-76935433 | MS.gene51262:CDS | 35.0% | |
! | AGTATCACGTCGTATTTTCA+AGG | - | chr6.3:76934624-76934643 | None:intergenic | 35.0% |
! | ATCCATCTTGCTATGCAAAA+AGG | + | chr6.3:76933528-76933547 | MS.gene51262:CDS | 35.0% |
! | GTCAAGAATTCAATGGATTC+CGG | - | chr6.3:76933693-76933712 | None:intergenic | 35.0% |
! | TTTTGCAAGTCAAATTGGTG+AGG | + | chr6.3:76933635-76933654 | MS.gene51262:CDS | 35.0% |
! | TTTTGCATAGCAAGATGGAT+GGG | - | chr6.3:76933528-76933547 | None:intergenic | 35.0% |
! | TTTTTGCATAGCAAGATGGA+TGG | - | chr6.3:76933529-76933548 | None:intergenic | 35.0% |
!! | TGTCACATTTTCTGGTATCA+TGG | - | chr6.3:76934951-76934970 | None:intergenic | 35.0% |
AAGCTTTCTCTTTGCTTGTC+CGG | + | chr6.3:76933671-76933690 | MS.gene51262:CDS | 40.0% | |
ACACCACCGTAACACAATAA+AGG | - | chr6.3:76935420-76935439 | None:intergenic | 40.0% | |
AGACATACACAGCTTTCGAA+GGG | - | chr6.3:76935449-76935468 | None:intergenic | 40.0% | |
CCAACCAACAAGTACTTGAA+GGG | - | chr6.3:76933769-76933788 | None:intergenic | 40.0% | |
CGTTAAGAATGATCAGTTCC+AGG | + | chr6.3:76933743-76933762 | MS.gene51262:CDS | 40.0% | |
GACATTGTTGCCAGACAATT+TGG | - | chr6.3:76935489-76935508 | None:intergenic | 40.0% | |
GATGGCATCTACATTTGTAG+GGG | - | chr6.3:76935350-76935369 | None:intergenic | 40.0% | |
GTATGTCTCGGTTAAACCAT+TGG | + | chr6.3:76935461-76935480 | MS.gene51262:CDS | 40.0% | |
TTAGACATTGCAACTACTGC+AGG | + | chr6.3:76934830-76934849 | MS.gene51262:CDS | 40.0% | |
TTCGAAAGCTGTGTATGTCT+CGG | + | chr6.3:76935449-76935468 | MS.gene51262:CDS | 40.0% | |
TTTACACATCGCTGCATCTT+GGG | + | chr6.3:76933425-76933444 | MS.gene51262:CDS | 40.0% | |
TTTGCATAGCAAGATGGATG+GGG | - | chr6.3:76933527-76933546 | None:intergenic | 40.0% | |
! | GACCTTTTTGCATAGCAAGA+TGG | - | chr6.3:76933533-76933552 | None:intergenic | 40.0% |
ATTGTTACCCCAGGAAATGC+TGG | + | chr6.3:76935145-76935164 | MS.gene51262:CDS | 45.0% | |
CAAGATGCAGCGATGTGTAA+AGG | - | chr6.3:76933426-76933445 | None:intergenic | 45.0% | |
CTAAATCAGAAGGATGAGGC+AGG | + | chr6.3:76933837-76933856 | MS.gene51262:CDS | 45.0% | |
CTTTACACATCGCTGCATCT+TGG | + | chr6.3:76933424-76933443 | MS.gene51262:CDS | 45.0% | |
GAGACATACACAGCTTTCGA+AGG | - | chr6.3:76935450-76935469 | None:intergenic | 45.0% | |
GCCAACCAACAAGTACTTGA+AGG | - | chr6.3:76933770-76933789 | None:intergenic | 45.0% | |
TAGAGGAGCAACGTAACACT+TGG | + | chr6.3:76935002-76935021 | MS.gene51262:CDS | 45.0% | |
TAGCCTGATAAACTCCACCA+GGG | - | chr6.3:76935081-76935100 | None:intergenic | 45.0% | |
TCATTGCACAAGGTTACCTG+TGG | - | chr6.3:76933903-76933922 | None:intergenic | 45.0% | |
TTACACATCGCTGCATCTTG+GGG | + | chr6.3:76933426-76933445 | MS.gene51262:CDS | 45.0% | |
TTAGCCTGATAAACTCCACC+AGG | - | chr6.3:76935082-76935101 | None:intergenic | 45.0% | |
TTGTTACCCCAGGAAATGCT+GGG | + | chr6.3:76935146-76935165 | MS.gene51262:CDS | 45.0% | |
! | CCCTTCAAGTACTTGTTGGT+TGG | + | chr6.3:76933766-76933785 | MS.gene51262:CDS | 45.0% |
! | CTAACCCCATCTGGGATAAT+AGG | + | chr6.3:76935256-76935275 | MS.gene51262:intron | 45.0% |
!! | ACCATTGGTGCCAAATTGTC+TGG | + | chr6.3:76935476-76935495 | MS.gene51262:CDS | 45.0% |
ACGGATTTCCCAGCATTTCC+TGG | - | chr6.3:76935157-76935176 | None:intergenic | 50.0% | |
ACGGCCTATTATCCCAGATG+GGG | - | chr6.3:76935263-76935282 | None:intergenic | 50.0% | |
AGACGGCCTATTATCCCAGA+TGG | - | chr6.3:76935265-76935284 | None:intergenic | 50.0% | |
AGCCTGATAAACTCCACCAG+GGG | - | chr6.3:76935080-76935099 | None:intergenic | 50.0% | |
CAACAAGTACTTGAAGGGCC+TGG | - | chr6.3:76933764-76933783 | None:intergenic | 50.0% | |
CAGGCCCTTCAAGTACTTGT+TGG | + | chr6.3:76933762-76933781 | MS.gene51262:CDS | 50.0% | |
CGGATTTCCCAGCATTTCCT+GGG | - | chr6.3:76935156-76935175 | None:intergenic | 50.0% | |
CTGAAAGCTGCAGCTGAATC+AGG | + | chr6.3:76933318-76933337 | MS.gene51262:CDS | 50.0% | |
GACGGCCTATTATCCCAGAT+GGG | - | chr6.3:76935264-76935283 | None:intergenic | 50.0% | |
GCCAGACAATTTGGCACCAA+TGG | - | chr6.3:76935480-76935499 | None:intergenic | 50.0% | |
GGATTTCCCAGCATTTCCTG+GGG | - | chr6.3:76935155-76935174 | None:intergenic | 50.0% | |
TGTAGCACAGGCTCGATTGT+TGG | + | chr6.3:76934757-76934776 | MS.gene51262:intron | 50.0% | |
! | CAAGAGAGGTGCAAAAGAGC+TGG | + | chr6.3:76933803-76933822 | MS.gene51262:CDS | 50.0% |
! | GGGGCTCACTGTTGATTGAT+AGG | - | chr6.3:76935059-76935078 | None:intergenic | 50.0% |
!! | GCGAGTATCACTGACTTCTG+AGG | - | chr6.3:76934894-76934913 | None:intergenic | 50.0% |
!! | GTATCACTGACTTCTGAGGC+AGG | - | chr6.3:76934890-76934909 | None:intergenic | 50.0% |
CCTGATAAACTCCACCAGGG+GGG | - | chr6.3:76935078-76935097 | None:intergenic | 55.0% | |
GCCTGATAAACTCCACCAGG+GGG | - | chr6.3:76935079-76935098 | None:intergenic | 55.0% | |
CAATCAACAGTGAGCCCCCC+TGG | + | chr6.3:76935061-76935080 | MS.gene51262:CDS | 60.0% | |
CCCCCCTGGTGGAGTTTATC+AGG | + | chr6.3:76935075-76935094 | MS.gene51262:CDS | 60.0% | |
TCAACAGTGAGCCCCCCTGG+TGG | + | chr6.3:76935064-76935083 | MS.gene51262:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 76933294 | 76935951 | 76933294 | ID=MS.gene51262 |
chr6.3 | mRNA | 76933294 | 76935951 | 76933294 | ID=MS.gene51262.t1;Parent=MS.gene51262 |
chr6.3 | exon | 76933294 | 76933905 | 76933294 | ID=MS.gene51262.t1.exon1;Parent=MS.gene51262.t1 |
chr6.3 | CDS | 76933294 | 76933905 | 76933294 | ID=cds.MS.gene51262.t1;Parent=MS.gene51262.t1 |
chr6.3 | exon | 76934767 | 76935174 | 76934767 | ID=MS.gene51262.t1.exon2;Parent=MS.gene51262.t1 |
chr6.3 | CDS | 76934767 | 76935174 | 76934767 | ID=cds.MS.gene51262.t1;Parent=MS.gene51262.t1 |
chr6.3 | exon | 76935390 | 76935521 | 76935390 | ID=MS.gene51262.t1.exon3;Parent=MS.gene51262.t1 |
chr6.3 | CDS | 76935390 | 76935521 | 76935390 | ID=cds.MS.gene51262.t1;Parent=MS.gene51262.t1 |
chr6.3 | exon | 76935937 | 76935951 | 76935937 | ID=MS.gene51262.t1.exon4;Parent=MS.gene51262.t1 |
chr6.3 | CDS | 76935937 | 76935951 | 76935937 | ID=cds.MS.gene51262.t1;Parent=MS.gene51262.t1 |
Gene Sequence |
Protein sequence |