AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51262


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51262.t1 MTR_8g039620 68.529 340 104 3 5 342 10 348 1.17e-162 463
MS.gene51262.t1 MTR_8g072510 68.895 344 102 4 1 342 1 341 9.47e-160 456
MS.gene51262.t1 MTR_3g016210 62.274 387 124 6 3 373 4 384 2.16e-158 453
MS.gene51262.t1 MTR_7g021090 62.234 376 126 6 1 373 1 363 1.26e-155 444
MS.gene51262.t1 MTR_8g062410 65.689 341 104 5 3 340 4 334 6.53e-147 424
MS.gene51262.t1 MTR_1g059930 62.429 354 126 4 1 349 1 352 7.40e-146 421
MS.gene51262.t1 MTR_8g073260 60.399 351 133 3 1 349 1 347 1.71e-144 418
MS.gene51262.t1 MTR_8g069880 64.688 337 115 3 5 340 3 336 3.65e-142 412
MS.gene51262.t1 MTR_7g451420 65.204 319 107 3 1 318 1 316 2.36e-137 395
MS.gene51262.t1 MTR_8g068990 59.593 344 118 5 4 343 7 333 5.51e-134 391
MS.gene51262.t1 MTR_8g066670 61.919 344 125 4 1 342 1067 1406 1.12e-125 395
MS.gene51262.t1 MTR_8g467780 57.593 349 135 4 7 344 9 355 5.97e-125 368
MS.gene51262.t1 MTR_8g040930 63.729 295 100 4 52 342 2 293 2.08e-123 362
MS.gene51262.t1 MTR_8g041240 63.729 295 100 4 52 342 2 293 2.08e-123 362
MS.gene51262.t1 MTR_3g105650 51.118 313 141 4 7 311 3 311 7.54e-102 308
MS.gene51262.t1 MTR_8g073275 43.700 373 130 9 52 357 2 361 7.97e-82 258
MS.gene51262.t1 MTR_1g069110 28.182 330 196 9 9 326 18 318 8.97e-30 119
MS.gene51262.t1 MTR_7g099580 25.796 314 182 6 7 316 10 276 2.83e-26 108
MS.gene51262.t1 MTR_2g101320 25.414 362 176 8 37 314 134 485 4.28e-23 101
MS.gene51262.t1 MTR_7g099570 28.169 284 155 6 9 287 9 248 3.70e-21 95.9
MS.gene51262.t1 MTR_1g115575 26.331 338 181 10 12 311 138 445 1.07e-18 88.2
MS.gene51262.t1 MTR_7g117620 25.260 289 180 7 44 310 119 393 1.29e-16 82.0
MS.gene51262.t1 MTR_2g101310 27.273 231 144 6 40 256 137 357 3.39e-15 77.4
MS.gene51262.t1 MTR_2g101310 27.234 235 147 6 40 260 137 361 6.36e-15 76.6
MS.gene51262.t1 MTR_1g032100 23.793 290 186 5 44 310 94 371 2.82e-14 74.7
MS.gene51262.t1 MTR_8g105260 24.138 290 185 6 44 310 101 378 9.36e-14 73.2
MS.gene51262.t1 MTR_7g100390 23.636 385 229 12 12 368 56 403 2.04e-13 72.0
MS.gene51262.t1 MTR_7g100430 24.654 361 207 12 42 353 124 468 2.65e-13 71.6
MS.gene51262.t1 MTR_2g096190 24.232 293 178 7 45 310 105 380 3.63e-13 71.2
MS.gene51262.t1 MTR_4g062100 23.958 288 185 6 45 310 109 384 9.71e-12 67.0
MS.gene51262.t1 MTR_5g085830 22.419 339 215 10 9 310 247 574 4.10e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51262.t1 AT4G10720 38.046 389 218 7 8 380 4 385 4.81e-78 248
MS.gene51262.t1 AT4G10720 40.683 322 181 3 8 321 4 323 5.95e-77 244
MS.gene51262.t1 AT1G14480 37.222 360 207 6 8 351 4 360 4.17e-73 234
MS.gene51262.t1 AT5G54620 36.896 393 221 8 7 387 3 380 8.01e-72 231
MS.gene51262.t1 AT1G14500 34.500 400 235 5 8 384 4 399 1.34e-69 225
MS.gene51262.t1 AT5G15500 40.385 312 176 5 9 312 6 315 2.57e-69 225
MS.gene51262.t1 AT5G54610 37.459 307 175 6 8 304 4 303 1.23e-63 209
MS.gene51262.t1 AT1G14480 34.857 350 186 7 8 351 4 317 1.65e-55 187
MS.gene51262.t1 AT5G15500 36.493 211 124 5 110 312 1 209 7.09e-31 121
MS.gene51262.t1 AT5G51160 29.044 272 167 5 62 314 34 298 5.06e-29 117
MS.gene51262.t1 AT1G10340 28.097 331 189 9 79 378 171 483 1.75e-19 90.5
MS.gene51262.t1 AT1G10340 28.146 302 170 8 79 349 175 460 1.76e-19 90.5
MS.gene51262.t1 AT2G24600 27.778 306 174 10 79 353 175 464 5.74e-19 89.4
MS.gene51262.t1 AT2G24600 27.778 306 174 10 79 353 175 464 5.74e-19 89.4
MS.gene51262.t1 AT5G54700 27.143 280 153 8 100 376 22 253 2.58e-18 85.9
MS.gene51262.t1 AT1G05640 27.019 322 190 10 21 310 157 465 3.96e-18 86.7
MS.gene51262.t1 AT1G34050 26.103 272 157 6 65 314 174 423 4.82e-18 86.3
MS.gene51262.t1 AT2G24600 27.820 266 154 8 79 314 175 432 6.01e-18 85.9
MS.gene51262.t1 AT2G24600 27.820 266 154 8 79 314 175 432 6.01e-18 85.9
MS.gene51262.t1 AT3G09550 27.246 334 183 11 12 311 150 457 7.71e-18 85.9
MS.gene51262.t1 AT3G09550 27.246 334 183 11 12 311 150 457 7.71e-18 85.9
MS.gene51262.t1 AT3G09550 27.246 334 183 11 12 311 157 464 7.78e-18 85.9
MS.gene51262.t1 AT5G54710 27.636 275 164 8 65 314 232 496 1.39e-17 85.1
MS.gene51262.t1 AT5G54710 27.636 275 164 8 65 314 187 451 1.40e-17 85.1
MS.gene51262.t1 AT5G54700 24.662 296 152 7 24 318 20 245 1.64e-16 81.3
MS.gene51262.t1 AT2G31820 25.000 384 215 15 21 368 193 539 1.91e-16 81.6
MS.gene51262.t1 AT4G03500 26.877 253 147 7 71 311 276 502 2.57e-16 81.3
MS.gene51262.t1 AT4G03500 26.877 253 147 7 71 311 253 479 2.68e-16 81.3
MS.gene51262.t1 AT4G03500 26.877 253 147 7 71 311 253 479 2.68e-16 81.3
MS.gene51262.t1 AT2G01680 22.788 373 228 10 14 349 57 406 4.80e-16 80.1
MS.gene51262.t1 AT3G12360 26.113 337 193 10 44 353 155 462 7.92e-16 79.7
MS.gene51262.t1 AT3G12360 26.113 337 193 10 44 353 167 474 8.58e-16 79.3
MS.gene51262.t1 AT4G03460 28.959 221 120 8 102 311 292 486 1.03e-14 76.3
MS.gene51262.t1 AT4G03460 28.959 221 120 8 102 311 260 454 1.19e-14 75.9
MS.gene51262.t1 AT1G07710 24.923 325 206 8 9 310 70 379 2.43e-13 72.0
MS.gene51262.t1 AT1G07710 24.923 325 206 8 9 310 70 379 2.43e-13 72.0
MS.gene51262.t1 AT5G02620 23.881 335 201 10 9 310 60 373 8.34e-13 70.1
MS.gene51262.t1 AT5G02620 23.881 335 201 10 9 310 60 373 8.34e-13 70.1
MS.gene51262.t1 AT5G02620 23.881 335 201 10 9 310 60 373 8.34e-13 70.1
MS.gene51262.t1 AT5G02620 23.446 354 202 10 9 310 60 396 3.75e-12 68.2
MS.gene51262.t1 AT5G02620 23.446 354 202 10 9 310 60 396 3.75e-12 68.2
MS.gene51262.t1 AT5G50140 25.366 205 127 5 40 228 26 220 3.82e-11 65.1
MS.gene51262.t1 AT5G60070 24.850 334 199 11 9 310 77 390 5.26e-11 64.7

Find 68 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTGTTGCCAGACAATT+TGG 0.246881 6.3:-76935486 None:intergenic
TCAAACATGAACACATATAA+TGG 0.259295 6.3:+76933288 None:intergenic
TCATAATTTCAGTGGCAAAT+TGG 0.275256 6.3:-76933455 None:intergenic
CTGAAAGCTGCAGCTGAATC+AGG 0.329052 6.3:+76933318 MS.gene51262:CDS
TTTACACATCGCTGCATCTT+GGG 0.336029 6.3:+76933425 MS.gene51262:CDS
ACGGATTTCCCAGCATTTCC+TGG 0.345494 6.3:-76935154 None:intergenic
AAAGAACTTGTTAAAGTTCA+AGG 0.348526 6.3:+76933588 MS.gene51262:CDS
CAAACATGAACACATATAAT+GGG 0.366318 6.3:+76933289 None:intergenic
GGGGCTCACTGTTGATTGAT+AGG 0.369452 6.3:-76935056 None:intergenic
CAGGCCCTTCAAGTACTTGT+TGG 0.375977 6.3:+76933762 MS.gene51262:CDS
CTGTTTCCTTTATTGTGTTA+CGG 0.390295 6.3:+76935411 MS.gene51262:CDS
CTTTACACATCGCTGCATCT+TGG 0.395215 6.3:+76933424 MS.gene51262:CDS
ATCCATCTTGCTATGCAAAA+AGG 0.399595 6.3:+76933528 MS.gene51262:CDS
ACCATTGGTGCCAAATTGTC+TGG 0.404788 6.3:+76935476 MS.gene51262:CDS
CGTTAAGAATGATCAGTTCC+AGG 0.406539 6.3:+76933743 MS.gene51262:CDS
GTCAAGAATTCAATGGATTC+CGG 0.407639 6.3:-76933690 None:intergenic
CCCTTCAAGTACTTGTTGGT+TGG 0.419850 6.3:+76933766 MS.gene51262:CDS
ACACCACCGTAACACAATAA+AGG 0.420453 6.3:-76935417 None:intergenic
AAGCTTTCTCTTTGCTTGTC+CGG 0.429085 6.3:+76933671 MS.gene51262:CDS
TCTTGGAAGCTAAATGTTGA+AGG 0.439916 6.3:+76933495 MS.gene51262:CDS
ATTGTTACCCCAGGAAATGC+TGG 0.447046 6.3:+76935145 MS.gene51262:CDS
TGTAAAGGAGTTTCAACAAA+TGG 0.455867 6.3:-76933408 None:intergenic
GCCAGACAATTTGGCACCAA+TGG 0.456819 6.3:-76935477 None:intergenic
TGTAGCACAGGCTCGATTGT+TGG 0.459562 6.3:+76934757 MS.gene51262:intron
CGGATTTCCCAGCATTTCCT+GGG 0.461411 6.3:-76935153 None:intergenic
CTGGAACTGATCATTCTTAA+CGG 0.463525 6.3:-76933742 None:intergenic
TCTCACAGTCAAGAATTCAA+TGG 0.466611 6.3:-76933697 None:intergenic
TTTAGCTTCCAAGAAAATGA+AGG 0.469976 6.3:-76933486 None:intergenic
AAGAAAATATTATTAAATGT+TGG 0.492021 6.3:+76934857 MS.gene51262:CDS
CAAGAGAGGTGCAAAAGAGC+TGG 0.493192 6.3:+76933803 MS.gene51262:CDS
CATTAGAAGAAATATATTAG+AGG 0.494104 6.3:+76934985 MS.gene51262:CDS
AGAATTAATAAGTGAACCAC+AGG 0.512346 6.3:+76933884 MS.gene51262:CDS
AAAGACTGTGATAGATTTGA+CGG 0.526302 6.3:+76934781 MS.gene51262:CDS
GCCAACCAACAAGTACTTGA+AGG 0.527792 6.3:-76933767 None:intergenic
TGTGGTGGTTTATATCATGA+AGG 0.532024 6.3:-76935943 None:intergenic
CAAGATGCAGCGATGTGTAA+AGG 0.533025 6.3:-76933423 None:intergenic
GTTAAAGTTCAAGGAAGAGA+AGG 0.535588 6.3:+76933597 MS.gene51262:CDS
ATTTGACTTGCAAAATGAAG+AGG 0.542519 6.3:-76933627 None:intergenic
GGTAACAATAGTATGATTTG+AGG 0.546324 6.3:-76935131 None:intergenic
TTAGACATTGCAACTACTGC+AGG 0.546899 6.3:+76934830 MS.gene51262:CDS
CAACAAGTACTTGAAGGGCC+TGG 0.547051 6.3:-76933761 None:intergenic
TTCGAAAGCTGTGTATGTCT+CGG 0.547356 6.3:+76935449 MS.gene51262:CDS
GTATCACTGACTTCTGAGGC+AGG 0.552340 6.3:-76934887 None:intergenic
TTTCAACATCATAATTTCAG+TGG 0.552567 6.3:-76933463 None:intergenic
CTTAATCTTAGTCTATCTGC+AGG 0.553505 6.3:-76934917 None:intergenic
GTGGTGGTTTATATCATGAA+GGG 0.558439 6.3:-76935942 None:intergenic
TTTGCATAGCAAGATGGATG+GGG 0.559583 6.3:-76933524 None:intergenic
TTACACATCGCTGCATCTTG+GGG 0.560081 6.3:+76933426 MS.gene51262:CDS
CTAAATCAGAAGGATGAGGC+AGG 0.569601 6.3:+76933837 MS.gene51262:CDS
AGAGAAAATACTAAATCAGA+AGG 0.570719 6.3:+76933827 MS.gene51262:CDS
TTAGCCTGATAAACTCCACC+AGG 0.571654 6.3:-76935079 None:intergenic
TAGAGGAGCAACGTAACACT+TGG 0.572878 6.3:+76935002 MS.gene51262:CDS
AATACTAAATCAGAAGGATG+AGG 0.578779 6.3:+76933833 MS.gene51262:CDS
GTATGTCTCGGTTAAACCAT+TGG 0.587969 6.3:+76935461 MS.gene51262:CDS
AATCATACTATTGTTACCCC+AGG 0.588167 6.3:+76935136 MS.gene51262:CDS
TTGTTACCCCAGGAAATGCT+GGG 0.594058 6.3:+76935146 MS.gene51262:CDS
GAGACATACACAGCTTTCGA+AGG 0.608419 6.3:-76935447 None:intergenic
CCAACCAACAAGTACTTGAA+GGG 0.616021 6.3:-76933766 None:intergenic
GCCTGATAAACTCCACCAGG+GGG 0.647531 6.3:-76935076 None:intergenic
GCGAGTATCACTGACTTCTG+AGG 0.648583 6.3:-76934891 None:intergenic
AGACATACACAGCTTTCGAA+GGG 0.657295 6.3:-76935446 None:intergenic
AAACATGAACACATATAATG+GGG 0.659412 6.3:+76933290 None:intergenic
AGTAGTTGCAATGTCTAATG+CGG 0.664859 6.3:-76934825 None:intergenic
AGCCTGATAAACTCCACCAG+GGG 0.666206 6.3:-76935077 None:intergenic
GGATTTCCCAGCATTTCCTG+GGG 0.671158 6.3:-76935152 None:intergenic
TAGCCTGATAAACTCCACCA+GGG 0.691927 6.3:-76935078 None:intergenic
TTTCCTTTATTGTGTTACGG+TGG 0.703708 6.3:+76935414 MS.gene51262:CDS
CCTGATAAACTCCACCAGGG+GGG 0.741917 6.3:-76935075 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATATTATTAAATGT+TGG + chr6.3:76934857-76934876 MS.gene51262:CDS 10.0%
!! ATTAAAACTTTCAAAACTTA+AGG + chr6.3:76934549-76934568 MS.gene51262:intron 15.0%
!! TAAATTGATGAAAAAAATGA+TGG - chr6.3:76935368-76935387 None:intergenic 15.0%
!!! AAGTTTTGAAAGTTTTAATT+AGG - chr6.3:76934548-76934567 None:intergenic 15.0%
!!! TGTAGTAAAATAATTCATTT+TGG + chr6.3:76934151-76934170 MS.gene51262:intron 15.0%
!! AAAGGACTAAAAGTTATATT+TGG + chr6.3:76934598-76934617 MS.gene51262:intron 20.0%
!! AAGTTTCAAAAGTTTCAAAT+AGG - chr6.3:76934488-76934507 None:intergenic 20.0%
!! CATTAGAAGAAATATATTAG+AGG + chr6.3:76934985-76935004 MS.gene51262:CDS 20.0%
!! GAAATAGTTTATCAACTAAA+AGG + chr6.3:76934461-76934480 MS.gene51262:intron 20.0%
!! TGTTATAATTGATACAAGAA+AGG - chr6.3:76935227-76935246 None:intergenic 20.0%
!! TTCAAAAGTTTCAAACTAAA+AGG + chr6.3:76934407-76934426 MS.gene51262:intron 20.0%
!! TTTAGTCACTATATTTCATA+TGG + chr6.3:76934030-76934049 MS.gene51262:intron 20.0%
!!! ATAATATTTGTCACATTTTC+TGG - chr6.3:76934959-76934978 None:intergenic 20.0%
!!! CATATTTGAAACTTTTGAAA+CGG + chr6.3:76934431-76934450 MS.gene51262:intron 20.0%
!!! TACAAATTGTTTTTTTTCCT+TGG - chr6.3:76933989-76934008 None:intergenic 20.0%
!!! TTGAAACTTTTGAAACATAA+AGG - chr6.3:76934341-76934360 None:intergenic 20.0%
!!! TTGAAACTTTTGAAACTTAA+AGG + chr6.3:76934490-76934509 MS.gene51262:intron 20.0%
! AAATGTGTGACACTTAATAT+AGG + chr6.3:76934668-76934687 MS.gene51262:intron 25.0%
! AATTGTGGTTTGAAAGAAAA+TGG + chr6.3:76935632-76935651 MS.gene51262:intron 25.0%
! AGAGAAAATACTAAATCAGA+AGG + chr6.3:76933827-76933846 MS.gene51262:CDS 25.0%
! ATCAAATTAAAGAGACCTTA+AGG - chr6.3:76935785-76935804 None:intergenic 25.0%
! CAAAAGACAAAAAACATTAC+TGG - chr6.3:76935301-76935320 None:intergenic 25.0%
! CATGAACAAACTCTAATAAA+TGG + chr6.3:76934710-76934729 MS.gene51262:intron 25.0%
! CCATTTCAAAAGTTTCAATT+AGG + chr6.3:76934283-76934302 MS.gene51262:intron 25.0%
! GAAACATAAAGGACTAATTT+AGG - chr6.3:76934330-76934349 None:intergenic 25.0%
! GAAATCATCATTTGACAATA+CGG - chr6.3:76935176-76935195 None:intergenic 25.0%
! GAATATACGTGTATTAATTG+TGG + chr6.3:76935617-76935636 MS.gene51262:intron 25.0%
! GAGTATTATGTCAAACTAAA+AGG + chr6.3:76934580-76934599 MS.gene51262:intron 25.0%
! TCTATATGCTCAAAAATAGA+TGG - chr6.3:76933381-76933400 None:intergenic 25.0%
! TTTCAACATCATAATTTCAG+TGG - chr6.3:76933466-76933485 None:intergenic 25.0%
!! AATTAGAAAATAAAGCACCA+AGG + chr6.3:76933969-76933988 MS.gene51262:intron 25.0%
!!! AAAGAACTTGTTAAAGTTCA+AGG + chr6.3:76933588-76933607 MS.gene51262:CDS 25.0%
!!! AGAAAATGGATTAATCAACA+TGG + chr6.3:76935646-76935665 MS.gene51262:intron 25.0%
!!! CCTAATTGAAACTTTTGAAA+TGG - chr6.3:76934286-76934305 None:intergenic 25.0%
!!! GTGCTTTATTTTCTAATTGA+GGG - chr6.3:76933967-76933986 None:intergenic 25.0%
!!! TGCTTTATTTTCTAATTGAG+GGG - chr6.3:76933966-76933985 None:intergenic 25.0%
AAAGACTGTGATAGATTTGA+CGG + chr6.3:76934781-76934800 MS.gene51262:CDS 30.0%
AATACTAAATCAGAAGGATG+AGG + chr6.3:76933833-76933852 MS.gene51262:CDS 30.0%
ACCTATAATCTTCATGTAAG+TGG + chr6.3:76935821-76935840 MS.gene51262:intron 30.0%
ACTTACATGAAGATTATAGG+TGG - chr6.3:76935822-76935841 None:intergenic 30.0%
AGAATTAATAAGTGAACCAC+AGG + chr6.3:76933884-76933903 MS.gene51262:CDS 30.0%
AGGAATTCTGTCAAACTAAA+AGG - chr6.3:76934310-76934329 None:intergenic 30.0%
ATTGCTATCGTTAAACCTTA+AGG + chr6.3:76935767-76935786 MS.gene51262:intron 30.0%
CTCAAAAAAAATTGCAAGAG+AGG + chr6.3:76933789-76933808 MS.gene51262:CDS 30.0%
CTGTTTCCTTTATTGTGTTA+CGG + chr6.3:76935411-76935430 MS.gene51262:CDS 30.0%
GAAACTTAAAGGACTAACTT+GGG + chr6.3:76934501-76934520 MS.gene51262:intron 30.0%
GAAACTTAGAAGACTAACTT+GGG - chr6.3:76934390-76934409 None:intergenic 30.0%
GACAAAAAACATTACTGGAA+TGG - chr6.3:76935296-76935315 None:intergenic 30.0%
GGTAACAATAGTATGATTTG+AGG - chr6.3:76935134-76935153 None:intergenic 30.0%
TAATCTAATGTCATTGCACA+AGG - chr6.3:76933913-76933932 None:intergenic 30.0%
TCATAATTTCAGTGGCAAAT+TGG - chr6.3:76933458-76933477 None:intergenic 30.0%
TCCACTTACATGAAGATTAT+AGG - chr6.3:76935825-76935844 None:intergenic 30.0%
TGAAACTTAAAGGACTAACT+TGG + chr6.3:76934500-76934519 MS.gene51262:intron 30.0%
TGAAACTTAGAAGACTAACT+TGG - chr6.3:76934391-76934410 None:intergenic 30.0%
TGTAAAGGAGTTTCAACAAA+TGG - chr6.3:76933411-76933430 None:intergenic 30.0%
! ACAACTTTTCTTCATCTTTG+TGG - chr6.3:76934121-76934140 None:intergenic 30.0%
! ACAAGAAAGGAAAGCATATT+CGG - chr6.3:76935214-76935233 None:intergenic 30.0%
! ATACGACGTGATACTTATTT+TGG + chr6.3:76934629-76934648 MS.gene51262:intron 30.0%
! CAACTTTTCTTCATCTTTGT+GGG - chr6.3:76934120-76934139 None:intergenic 30.0%
! CTTCATTTTGCAAGTCAAAT+TGG + chr6.3:76933630-76933649 MS.gene51262:CDS 30.0%
! TGTTGAAACCTTCATTTTCT+TGG + chr6.3:76933478-76933497 MS.gene51262:CDS 30.0%
! TTTAGCTTCCAAGAAAATGA+AGG - chr6.3:76933489-76933508 None:intergenic 30.0%
!! ATTTGACTTGCAAAATGAAG+AGG - chr6.3:76933630-76933649 None:intergenic 30.0%
!!! GGTGCTTTATTTTCTAATTG+AGG - chr6.3:76933968-76933987 None:intergenic 30.0%
AATCATACTATTGTTACCCC+AGG + chr6.3:76935136-76935155 MS.gene51262:CDS 35.0%
AGTAGTTGCAATGTCTAATG+CGG - chr6.3:76934828-76934847 None:intergenic 35.0%
ATATTATGTCTAACCCCATC+TGG + chr6.3:76935247-76935266 MS.gene51262:intron 35.0%
ATGATGGCATCTACATTTGT+AGG - chr6.3:76935352-76935371 None:intergenic 35.0%
CTGGAACTGATCATTCTTAA+CGG - chr6.3:76933745-76933764 None:intergenic 35.0%
CTGGAATGGACATTAATAGA+CGG - chr6.3:76935282-76935301 None:intergenic 35.0%
CTTAATCTTAGTCTATCTGC+AGG - chr6.3:76934920-76934939 None:intergenic 35.0%
GACACTTAATATAGGATGGA+GGG + chr6.3:76934676-76934695 MS.gene51262:intron 35.0%
GCAAAAAGGTCAAACAATGA+TGG + chr6.3:76933542-76933561 MS.gene51262:CDS 35.0%
GGGAATTCTGTCAAACTAAA+AGG + chr6.3:76934521-76934540 MS.gene51262:intron 35.0%
GTGTGACACTTAATATAGGA+TGG + chr6.3:76934672-76934691 MS.gene51262:intron 35.0%
GTTAAAGTTCAAGGAAGAGA+AGG + chr6.3:76933597-76933616 MS.gene51262:CDS 35.0%
TATTATGTCTAACCCCATCT+GGG + chr6.3:76935248-76935267 MS.gene51262:intron 35.0%
TCATGATTACTTTGTAGCAC+AGG + chr6.3:76934745-76934764 MS.gene51262:intron 35.0%
TCTCACAGTCAAGAATTCAA+TGG - chr6.3:76933700-76933719 None:intergenic 35.0%
TCTTGGAAGCTAAATGTTGA+AGG + chr6.3:76933495-76933514 MS.gene51262:CDS 35.0%
TGACACTTAATATAGGATGG+AGG + chr6.3:76934675-76934694 MS.gene51262:intron 35.0%
TGATGGCATCTACATTTGTA+GGG - chr6.3:76935351-76935370 None:intergenic 35.0%
TTAATCAACATGGTGTGTGA+TGG + chr6.3:76935656-76935675 MS.gene51262:intron 35.0%
TTTCCTTTATTGTGTTACGG+TGG + chr6.3:76935414-76935433 MS.gene51262:CDS 35.0%
! AGTATCACGTCGTATTTTCA+AGG - chr6.3:76934624-76934643 None:intergenic 35.0%
! ATCCATCTTGCTATGCAAAA+AGG + chr6.3:76933528-76933547 MS.gene51262:CDS 35.0%
! GTCAAGAATTCAATGGATTC+CGG - chr6.3:76933693-76933712 None:intergenic 35.0%
! TTTTGCAAGTCAAATTGGTG+AGG + chr6.3:76933635-76933654 MS.gene51262:CDS 35.0%
! TTTTGCATAGCAAGATGGAT+GGG - chr6.3:76933528-76933547 None:intergenic 35.0%
! TTTTTGCATAGCAAGATGGA+TGG - chr6.3:76933529-76933548 None:intergenic 35.0%
!! TGTCACATTTTCTGGTATCA+TGG - chr6.3:76934951-76934970 None:intergenic 35.0%
AAGCTTTCTCTTTGCTTGTC+CGG + chr6.3:76933671-76933690 MS.gene51262:CDS 40.0%
ACACCACCGTAACACAATAA+AGG - chr6.3:76935420-76935439 None:intergenic 40.0%
AGACATACACAGCTTTCGAA+GGG - chr6.3:76935449-76935468 None:intergenic 40.0%
CCAACCAACAAGTACTTGAA+GGG - chr6.3:76933769-76933788 None:intergenic 40.0%
CGTTAAGAATGATCAGTTCC+AGG + chr6.3:76933743-76933762 MS.gene51262:CDS 40.0%
GACATTGTTGCCAGACAATT+TGG - chr6.3:76935489-76935508 None:intergenic 40.0%
GATGGCATCTACATTTGTAG+GGG - chr6.3:76935350-76935369 None:intergenic 40.0%
GTATGTCTCGGTTAAACCAT+TGG + chr6.3:76935461-76935480 MS.gene51262:CDS 40.0%
TTAGACATTGCAACTACTGC+AGG + chr6.3:76934830-76934849 MS.gene51262:CDS 40.0%
TTCGAAAGCTGTGTATGTCT+CGG + chr6.3:76935449-76935468 MS.gene51262:CDS 40.0%
TTTACACATCGCTGCATCTT+GGG + chr6.3:76933425-76933444 MS.gene51262:CDS 40.0%
TTTGCATAGCAAGATGGATG+GGG - chr6.3:76933527-76933546 None:intergenic 40.0%
! GACCTTTTTGCATAGCAAGA+TGG - chr6.3:76933533-76933552 None:intergenic 40.0%
ATTGTTACCCCAGGAAATGC+TGG + chr6.3:76935145-76935164 MS.gene51262:CDS 45.0%
CAAGATGCAGCGATGTGTAA+AGG - chr6.3:76933426-76933445 None:intergenic 45.0%
CTAAATCAGAAGGATGAGGC+AGG + chr6.3:76933837-76933856 MS.gene51262:CDS 45.0%
CTTTACACATCGCTGCATCT+TGG + chr6.3:76933424-76933443 MS.gene51262:CDS 45.0%
GAGACATACACAGCTTTCGA+AGG - chr6.3:76935450-76935469 None:intergenic 45.0%
GCCAACCAACAAGTACTTGA+AGG - chr6.3:76933770-76933789 None:intergenic 45.0%
TAGAGGAGCAACGTAACACT+TGG + chr6.3:76935002-76935021 MS.gene51262:CDS 45.0%
TAGCCTGATAAACTCCACCA+GGG - chr6.3:76935081-76935100 None:intergenic 45.0%
TCATTGCACAAGGTTACCTG+TGG - chr6.3:76933903-76933922 None:intergenic 45.0%
TTACACATCGCTGCATCTTG+GGG + chr6.3:76933426-76933445 MS.gene51262:CDS 45.0%
TTAGCCTGATAAACTCCACC+AGG - chr6.3:76935082-76935101 None:intergenic 45.0%
TTGTTACCCCAGGAAATGCT+GGG + chr6.3:76935146-76935165 MS.gene51262:CDS 45.0%
! CCCTTCAAGTACTTGTTGGT+TGG + chr6.3:76933766-76933785 MS.gene51262:CDS 45.0%
! CTAACCCCATCTGGGATAAT+AGG + chr6.3:76935256-76935275 MS.gene51262:intron 45.0%
!! ACCATTGGTGCCAAATTGTC+TGG + chr6.3:76935476-76935495 MS.gene51262:CDS 45.0%
ACGGATTTCCCAGCATTTCC+TGG - chr6.3:76935157-76935176 None:intergenic 50.0%
ACGGCCTATTATCCCAGATG+GGG - chr6.3:76935263-76935282 None:intergenic 50.0%
AGACGGCCTATTATCCCAGA+TGG - chr6.3:76935265-76935284 None:intergenic 50.0%
AGCCTGATAAACTCCACCAG+GGG - chr6.3:76935080-76935099 None:intergenic 50.0%
CAACAAGTACTTGAAGGGCC+TGG - chr6.3:76933764-76933783 None:intergenic 50.0%
CAGGCCCTTCAAGTACTTGT+TGG + chr6.3:76933762-76933781 MS.gene51262:CDS 50.0%
CGGATTTCCCAGCATTTCCT+GGG - chr6.3:76935156-76935175 None:intergenic 50.0%
CTGAAAGCTGCAGCTGAATC+AGG + chr6.3:76933318-76933337 MS.gene51262:CDS 50.0%
GACGGCCTATTATCCCAGAT+GGG - chr6.3:76935264-76935283 None:intergenic 50.0%
GCCAGACAATTTGGCACCAA+TGG - chr6.3:76935480-76935499 None:intergenic 50.0%
GGATTTCCCAGCATTTCCTG+GGG - chr6.3:76935155-76935174 None:intergenic 50.0%
TGTAGCACAGGCTCGATTGT+TGG + chr6.3:76934757-76934776 MS.gene51262:intron 50.0%
! CAAGAGAGGTGCAAAAGAGC+TGG + chr6.3:76933803-76933822 MS.gene51262:CDS 50.0%
! GGGGCTCACTGTTGATTGAT+AGG - chr6.3:76935059-76935078 None:intergenic 50.0%
!! GCGAGTATCACTGACTTCTG+AGG - chr6.3:76934894-76934913 None:intergenic 50.0%
!! GTATCACTGACTTCTGAGGC+AGG - chr6.3:76934890-76934909 None:intergenic 50.0%
CCTGATAAACTCCACCAGGG+GGG - chr6.3:76935078-76935097 None:intergenic 55.0%
GCCTGATAAACTCCACCAGG+GGG - chr6.3:76935079-76935098 None:intergenic 55.0%
CAATCAACAGTGAGCCCCCC+TGG + chr6.3:76935061-76935080 MS.gene51262:CDS 60.0%
CCCCCCTGGTGGAGTTTATC+AGG + chr6.3:76935075-76935094 MS.gene51262:CDS 60.0%
TCAACAGTGAGCCCCCCTGG+TGG + chr6.3:76935064-76935083 MS.gene51262:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 76933294 76935951 76933294 ID=MS.gene51262
chr6.3 mRNA 76933294 76935951 76933294 ID=MS.gene51262.t1;Parent=MS.gene51262
chr6.3 exon 76933294 76933905 76933294 ID=MS.gene51262.t1.exon1;Parent=MS.gene51262.t1
chr6.3 CDS 76933294 76933905 76933294 ID=cds.MS.gene51262.t1;Parent=MS.gene51262.t1
chr6.3 exon 76934767 76935174 76934767 ID=MS.gene51262.t1.exon2;Parent=MS.gene51262.t1
chr6.3 CDS 76934767 76935174 76934767 ID=cds.MS.gene51262.t1;Parent=MS.gene51262.t1
chr6.3 exon 76935390 76935521 76935390 ID=MS.gene51262.t1.exon3;Parent=MS.gene51262.t1
chr6.3 CDS 76935390 76935521 76935390 ID=cds.MS.gene51262.t1;Parent=MS.gene51262.t1
chr6.3 exon 76935937 76935951 76935937 ID=MS.gene51262.t1.exon4;Parent=MS.gene51262.t1
chr6.3 CDS 76935937 76935951 76935937 ID=cds.MS.gene51262.t1;Parent=MS.gene51262.t1
Gene Sequence

>MS.gene51262

ATGAACACATATAATGGGGAGCAGCTGAAAGCTGCAGCTGAATCAGGTGATATAAATCTTCTCTACACTGTAATTCGAAATGATCCATCTATTTTTGAGCATATAGATTTGATACCATTTGTTGAAACTCCTTTACACATCGCTGCATCTTGGGGTCATCTCCAATTTGCCACTGAAATTATGATGTTGAAACCTTCATTTTCTTGGAAGCTAAATGTTGAAGGATTCAGCCCCATCCATCTTGCTATGCAAAAAGGTCAAACAATGATGGTATCTCGCTTTGTTAACATCAATAAAGAACTTGTTAAAGTTCAAGGAAGAGAAGGCATAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAGGTTGATCTTTTAGCAAGCTTTCTCTTTGCTTGTCCGGAATCCATTGAATTCTTGACTGTGAGACAAGAGACTGCACTGCATATTGCCGTTAAGAATGATCAGTTCCAGGCCCTTCAAGTACTTGTTGGTTGGCTCAAAAAAAATTGCAAGAGAGGTGCAAAAGAGCTGGAAGAGAAAATACTAAATCAGAAGGATGAGGCAGGCAATACTATTTTGCACATTTCAGCAGAATTAATAAGTGAACCACAGGTAACCTTGTGCAATGACATTAGATTACATGTCTTTTTTATATATTTCTTTTGTTTTCCCCTCAATTAGAAAATAAAGCACCAAGGAAAAAAAACAATTTGTAAATGACATGTTTTTTATTATTTTTAGTCACTATATTTCATATGGAATGCAGAGCACTTTAAAGTAAAGAATTAGCATGCAAAGAAAAGTACTAGTTTTGATTTTTTTTCCCACAAAGATGAAGAAAAGTTGTAAATATGTTTTGTAGTAAAATAATTCATTTTGGAGTCTTTAAAACAAAGTTGTAAATAAATAAACAATGTAATATGTTAATAAAAAATTTCTTATTTAATCATTATCATAAATGTATAGCTTAGTAAACTATTTCATTGTCACCATTTCAAAAGTTTCAATTAGGTCCTTTTAGTTTGACAGAATTCCTAAATTAGTCCTTTATGTTTCAAAAGTTTCAAATAAGTCATTTTAGTTTGACAGAATTCCCAAGTTAGTCTTCTAAGTTTCAAAAGTTTCAAACTAAAAGGACATATTTGAAACTTTTGAAACGGTGATGATGAAATAGTTTATCAACTAAAAGGACCTATTTGAAACTTTTGAAACTTAAAGGACTAACTTGGGAATTCTGTCAAACTAAAAGGACCTAATTAAAACTTTCAAAACTTAAGGATTAACTTGAGTATTATGTCAAACTAAAAGGACTAAAAGTTATATTTGGCCTTGAAAATACGACGTGATACTTATTTTGGAATATTTTTCTTTTGCAAATGTGTGACACTTAATATAGGATGGAGGGATTAGTCGTAACATGAACAAACTCTAATAAATGGTATGATTTTTATTCATGATTACTTTGTAGCACAGGCTCGATTGTTGGTAAAGACTGTGATAGATTTGACGGCAAAAAACTTACAGAACAAAACCGCATTAGACATTGCAACTACTGCAGGAATCAAGAAAATATTATTAAATGTTGGAGCGAAACCTGCCTCAGAAGTCAGTGATACTCGCACACCTGCAGATAGACTAAGATTAAGATCAAACACCATGATACCAGAAAATGTGACAAATATTATGAGTCGCATTAGAAGAAATATATTAGAGGAGCAACGTAACACTTGGTTGATAGTTGCGACTCTTGTTGCGACTGCAACCTATCAATCAACAGTGAGCCCCCCTGGTGGAGTTTATCAGGCTAACGCTAGTGACAATACTGTGAACATTACTTCCTCAAATCATACTATTGTTACCCCAGGAAATGCTGGGAAATCCGTATTGTCAAATGATGATTTCTTTTATTTTTTTGTTCCGAATATGCTTTCCTTTCTTGTATCAATTATAACAATATTATGTCTAACCCCATCTGGGATAATAGGCCGTCTATTAATGTCCATTCCAGTAATGTTTTTTGTCTTTTGCTATCTATATTCTATGCTTATTATTTCCCCTACAAATGTAGATGCCATCATTTTTTTCATCAATTTAAGTTTATCTGTAATGCAAGCTGTCTGTTTCCTTTATTGTGTTACGGTGGTGTACTCTACCCTTCGAAAGCTGTGTATGTCTCGGTTAAACCATTGGTGCCAAATTGTCTGGCAACAATGTCTCAACGTCTATTTGTAATTGTCATTGCTTTCATTGTTTTTGTTCAATCATAGAAAATTGTGACTCAATGTATTAAATATTTTAAGCATGTCTTGTATTTTATTTTATTGAATATACGTGTATTAATTGTGGTTTGAAAGAAAATGGATTAATCAACATGGTGTGTGATGGTCTTTTGCAAAAGATTAATTATAAATGTTAAATATTGACTTAATTGATAAGAAATTGAGTAATTTGTAACTACATGAGTTCAACTTTTATTGCTATCGTTAAACCTTAAGGTCTCTTTAATTTGATCAAATATCTTATATCCACCTATAATCTTCATGTAAGTGGATTTGATGTCAAAACTAAAATAAATAATAACTCTTTTAAATGCGTTTTATTAGTCTTGTTGATTTCAAATTAGTTATATATTACTATTCATAGAAATACCCTTCATGA

Protein sequence

>MS.gene51262.t1

MNTYNGEQLKAAAESGDINLLYTVIRNDPSIFEHIDLIPFVETPLHIAASWGHLQFATEIMMLKPSFSWKLNVEGFSPIHLAMQKGQTMMVSRFVNINKELVKVQGREGITPLHFASQIGEVDLLASFLFACPESIEFLTVRQETALHIAVKNDQFQALQVLVGWLKKNCKRGAKELEEKILNQKDEAGNTILHISAELISEPQARLLVKTVIDLTAKNLQNKTALDIATTAGIKKILLNVGAKPASEVSDTRTPADRLRLRSNTMIPENVTNIMSRIRRNILEEQRNTWLIVATLVATATYQSTVSPPGGVYQANASDNTVNITSSNHTIVTPGNAGKSFICNASCLFPLLCYGGVLYPSKAVYVSVKPLVPNCLATMSQRLFKYPS