AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41291

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41291.t1 MTR_8g072510 74.656 363 82 3 1 362 1 354 0.0 535
MS.gene41291.t1 MTR_7g021090 70.330 364 94 3 1 364 1 350 4.59e-178 501
MS.gene41291.t1 MTR_8g039620 68.975 361 100 3 5 362 10 361 7.24e-172 486
MS.gene41291.t1 MTR_8g062410 70.055 364 92 4 1 362 1 349 9.44e-168 476
MS.gene41291.t1 MTR_3g016210 63.089 382 116 5 1 366 1 373 9.23e-161 458
MS.gene41291.t1 MTR_1g059930 63.661 366 122 3 1 363 1 358 8.95e-156 445
MS.gene41291.t1 MTR_8g068990 63.687 358 104 5 8 362 11 345 3.98e-150 431
MS.gene41291.t1 MTR_8g073260 60.773 362 125 4 1 358 1 349 2.54e-146 421
MS.gene41291.t1 MTR_8g069880 62.327 361 125 4 4 363 2 352 4.40e-144 416
MS.gene41291.t1 MTR_7g451420 65.312 320 103 1 1 320 1 312 4.65e-142 405
MS.gene41291.t1 MTR_8g040930 65.147 307 103 2 59 362 1 306 4.46e-133 385
MS.gene41291.t1 MTR_8g041240 65.147 307 103 2 59 362 1 306 4.46e-133 385
MS.gene41291.t1 MTR_8g066670 59.178 365 138 4 1 364 1067 1421 8.79e-131 408
MS.gene41291.t1 MTR_8g467780 54.372 366 149 3 7 362 9 366 1.10e-124 367
MS.gene41291.t1 MTR_3g105650 49.057 318 146 3 7 317 3 311 2.00e-99 301
MS.gene41291.t1 MTR_8g073275 44.744 371 129 7 59 363 1 361 5.30e-84 263
MS.gene41291.t1 MTR_7g099580 26.250 320 175 8 7 320 10 274 1.39e-29 117
MS.gene41291.t1 MTR_1g069110 25.549 364 227 10 9 363 18 346 9.21e-27 110
MS.gene41291.t1 MTR_7g099570 29.048 210 127 4 1 205 1 193 5.07e-20 92.0
MS.gene41291.t1 MTR_1g115575 26.687 326 180 10 44 341 169 463 1.84e-18 87.0
MS.gene41291.t1 MTR_7g117620 25.424 295 178 5 44 316 119 393 1.98e-18 87.0
MS.gene41291.t1 MTR_2g101320 28.947 228 136 5 37 256 134 343 2.22e-18 87.0
MS.gene41291.t1 MTR_2g096190 23.770 366 205 10 9 316 31 380 1.27e-16 81.6
MS.gene41291.t1 MTR_7g100390 24.852 338 210 8 2 316 46 362 4.33e-15 77.0
MS.gene41291.t1 MTR_4g062100 25.676 296 176 7 45 316 109 384 6.37e-15 76.3
MS.gene41291.t1 MTR_5g085500 34.351 131 72 4 113 238 35 156 1.09e-14 75.5
MS.gene41291.t1 MTR_2g033050 28.780 205 127 5 68 268 217 406 1.29e-14 75.1
MS.gene41291.t1 MTR_5g085830 25.234 214 150 5 67 276 293 500 5.91e-14 73.6
MS.gene41291.t1 MTR_2g101310 27.670 206 131 3 57 254 146 341 4.36e-13 70.9
MS.gene41291.t1 MTR_2g101310 27.670 206 131 3 57 254 146 341 4.76e-13 70.5
MS.gene41291.t1 MTR_5g085810 25.116 215 147 6 68 276 320 526 6.70e-13 70.5
MS.gene41291.t1 MTR_8g105260 23.875 289 182 7 53 316 103 378 3.08e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41291.t1 AT4G10720 39.286 364 202 4 8 360 4 359 7.95e-81 254
MS.gene41291.t1 AT4G10720 41.265 332 179 3 8 331 4 327 2.24e-80 252
MS.gene41291.t1 AT5G15500 39.444 360 190 6 9 360 6 345 3.84e-74 237
MS.gene41291.t1 AT1G14480 35.813 363 215 3 8 360 4 358 1.63e-73 235
MS.gene41291.t1 AT1G14500 36.810 326 189 3 8 324 4 321 2.38e-73 234
MS.gene41291.t1 AT5G54620 40.635 315 172 3 7 314 3 309 2.95e-69 224
MS.gene41291.t1 AT5G54610 36.334 311 181 4 8 311 4 304 3.13e-60 200
MS.gene41291.t1 AT1G14480 33.994 353 192 6 8 360 4 315 6.30e-56 188
MS.gene41291.t1 AT5G15500 34.661 251 144 5 118 360 1 239 3.42e-35 132
MS.gene41291.t1 AT5G51160 29.968 317 191 6 71 363 35 344 5.59e-31 122
MS.gene41291.t1 AT1G03670 30.992 242 124 9 96 323 266 478 5.56e-19 89.0
MS.gene41291.t1 AT4G03500 28.000 225 136 6 100 317 297 502 5.27e-18 85.9
MS.gene41291.t1 AT4G03500 28.000 225 136 6 100 317 274 479 5.79e-18 85.9
MS.gene41291.t1 AT4G03500 28.000 225 136 6 100 317 274 479 5.79e-18 85.9
MS.gene41291.t1 AT4G03460 28.638 213 133 4 108 317 258 454 1.38e-17 84.7
MS.gene41291.t1 AT4G03460 28.638 213 133 4 108 317 290 486 1.39e-17 84.7
MS.gene41291.t1 AT1G34050 23.871 310 200 6 73 364 174 465 1.56e-17 84.3
MS.gene41291.t1 AT5G54700 28.090 267 151 8 103 364 17 247 2.49e-17 82.4
MS.gene41291.t1 AT3G09550 25.000 348 196 11 12 329 157 469 2.86e-16 80.5
MS.gene41291.t1 AT3G09550 25.000 348 196 11 12 329 150 462 3.00e-16 80.5
MS.gene41291.t1 AT3G09550 25.000 348 196 11 12 329 150 462 3.00e-16 80.5
MS.gene41291.t1 AT4G03450 27.670 206 134 4 116 317 290 484 1.42e-15 78.6
MS.gene41291.t1 AT4G03450 27.670 206 134 4 116 317 290 484 1.76e-15 78.2
MS.gene41291.t1 AT5G54710 28.216 241 136 8 106 320 222 451 2.04e-15 78.2
MS.gene41291.t1 AT5G54710 28.216 241 136 8 106 320 267 496 2.06e-15 78.2
MS.gene41291.t1 AT1G05640 25.234 321 189 8 24 316 168 465 5.46e-15 76.6
MS.gene41291.t1 AT2G01680 25.369 339 202 10 53 363 99 414 5.86e-15 76.6
MS.gene41291.t1 AT1G07710 23.529 357 229 7 2 335 63 398 7.75e-15 76.3
MS.gene41291.t1 AT1G07710 23.529 357 229 7 2 335 63 398 7.75e-15 76.3
MS.gene41291.t1 AT5G60070 24.262 305 202 8 12 316 115 390 1.17e-14 75.5
MS.gene41291.t1 AT3G12360 25.240 313 178 9 44 330 155 437 5.85e-14 73.6
MS.gene41291.t1 AT3G12360 25.240 313 178 9 44 330 167 449 6.32e-14 73.6
MS.gene41291.t1 AT4G14390 24.202 376 222 11 2 363 245 571 1.13e-12 69.7
MS.gene41291.t1 AT4G14390 24.468 376 220 12 2 363 226 551 2.07e-12 68.9
MS.gene41291.t1 AT4G14390 24.468 376 220 12 2 363 245 570 2.08e-12 68.9
MS.gene41291.t1 AT4G14390 23.780 328 204 8 2 315 226 521 5.89e-11 64.3

Find 64 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTAATACTGGTATAAATT+TGG 0.110163 1.2:+32012725 MS.gene41291:CDS
AAAGACCTTGTTAGAATTAA+AGG 0.120242 1.2:+32012236 MS.gene41291:CDS
AATTCTACTATTTCTATTCT+AGG 0.151321 1.2:+32013080 MS.gene41291:CDS
AATCTCACAGTCAAGTATTT+AGG 0.160244 1.2:-32012347 None:intergenic
GTTAATACTGGTATAAATTT+GGG 0.229623 1.2:+32012726 MS.gene41291:CDS
CTTCTATTGTTGGTTAATAC+TGG 0.279992 1.2:+32012714 MS.gene41291:CDS
TCCTCCTGGTGGAATTTATC+AGG 0.303509 1.2:+32013016 MS.gene41291:CDS
TGAGGAAGATCCATTCATTC+TGG 0.311643 1.2:+32011992 MS.gene41291:CDS
TCATATCTCGTTTGCATCAA+TGG 0.360318 1.2:+32012073 MS.gene41291:CDS
ATCTCACAGTCAAGTATTTA+GGG 0.367858 1.2:-32012346 None:intergenic
AATAGAAATAGTAGAATTTG+AGG 0.370364 1.2:-32013075 None:intergenic
GCAGCTGAAAGCTGCAGCTC+AGG 0.395348 1.2:+32011938 MS.gene41291:CDS
GTTACATATTGCTGCATCAA+TGG 0.397056 1.2:+32012049 MS.gene41291:CDS
TAGTGCTGAAATATGCAAAA+TGG 0.398549 1.2:-32012513 None:intergenic
ATTTCTATTCTAGGAAATGC+TGG 0.411594 1.2:+32013089 MS.gene41291:CDS
TGTTGCCTGCTTTATCCCTC+TGG 0.417230 1.2:-32012490 None:intergenic
CCCTTCAAGTACTTGTTAGC+TGG 0.417708 1.2:+32012414 MS.gene41291:CDS
ATTTAAAACCTTCATTTGCT+TGG 0.418134 1.2:+32012126 MS.gene41291:CDS
GATGGATGGGGCTGAATCCT+TGG 0.440404 1.2:-32012160 None:intergenic
AGCACAGGCACTTCTATTGT+TGG 0.444264 1.2:+32012704 MS.gene41291:intron
GAAATTCTGCGCTTAAGACT+TGG 0.455595 1.2:-32013381 None:intergenic
TCTATATGCTCCAGAATGAA+TGG 0.459267 1.2:-32012002 None:intergenic
GTCAAGTATTTAGGGGAATC+CGG 0.471461 1.2:-32012338 None:intergenic
GCTGGGAAATCAGTCTTGTC+AGG 0.477588 1.2:+32013107 MS.gene41291:CDS
CTCTTCCTTTAATTCTAACA+AGG 0.482377 1.2:-32012241 None:intergenic
TTTAGCTTCCAAGCAAATGA+AGG 0.484047 1.2:-32012134 None:intergenic
CATATCTCGTTTGCATCAAT+GGG 0.486198 1.2:+32012074 MS.gene41291:CDS
GCCAGCTAACAAGTACTTGA+AGG 0.489142 1.2:-32012415 None:intergenic
TGTAACGGAGTTTCAACAAA+TGG 0.492054 1.2:-32012032 None:intergenic
TCTCCTTTACGCAGTAATTG+AGG 0.500494 1.2:+32011974 MS.gene41291:CDS
GCAACTGCGATCTATCAATC+AGG 0.505224 1.2:+32012987 MS.gene41291:CDS
TTACATATTGCTGCATCAAT+GGG 0.508697 1.2:+32012050 MS.gene41291:CDS
TGTTAAGAATCAACAATATG+AGG 0.510561 1.2:+32012391 MS.gene41291:CDS
AAGAGTATATTATTAAGTGT+TGG 0.518044 1.2:+32012804 MS.gene41291:CDS
CAATCAGGATTAAGTCCTCC+TGG 0.518342 1.2:+32013002 MS.gene41291:CDS
AAATTCTGCGCTTAAGACTT+GGG 0.519583 1.2:-32013380 None:intergenic
CTTCCTCAATTACTGCGTAA+AGG 0.524450 1.2:-32011977 None:intergenic
GTTAGAATTAAAGGAAGAGA+GGG 0.531611 1.2:+32012245 MS.gene41291:CDS
GGAATTTATCAGGTTAGTGC+CGG 0.544318 1.2:+32013026 MS.gene41291:CDS
TTTCTATTCTAGGAAATGCT+GGG 0.545527 1.2:+32013090 MS.gene41291:CDS
CAGATGAACAACGCAACACT+TGG 0.551536 1.2:+32012943 MS.gene41291:CDS
CTGAAAGCTGCAGCTCAGGA+AGG 0.558773 1.2:+32011942 MS.gene41291:CDS
TTAATACTGGTATAAATTTG+GGG 0.562939 1.2:+32012727 MS.gene41291:CDS
AGCACTAAGTAGTGAGCCCC+AGG 0.563584 1.2:+32012529 MS.gene41291:CDS
GCTTGGAAGCTAAATCTCCA+AGG 0.566110 1.2:+32012143 MS.gene41291:CDS
AAATCGAATATTAAACCAGA+GGG 0.576391 1.2:+32012475 MS.gene41291:CDS
TGTTAGAATTAAAGGAAGAG+AGG 0.578303 1.2:+32012244 MS.gene41291:CDS
GAATCAGCGACTTCTAAGCT+AGG 0.580948 1.2:-32012834 None:intergenic
CTCAAAAGAAATAAAAGAAG+TGG 0.590645 1.2:+32012437 MS.gene41291:CDS
GTTCCCACCATTGTCATCAC+CGG 0.598390 1.2:-32013045 None:intergenic
CCAGCTAACAAGTACTTGAA+GGG 0.613435 1.2:-32012414 None:intergenic
GCACACGTGCACAAAGACTC+AGG 0.617233 1.2:+32012859 MS.gene41291:CDS
TTAAACCAGAGGGATAAAGC+AGG 0.617620 1.2:+32012485 MS.gene41291:CDS
ATTGATGCAGCAATATGTAA+CGG 0.647480 1.2:-32012047 None:intergenic
TAATACTGGTATAAATTTGG+GGG 0.648877 1.2:+32012728 MS.gene41291:CDS
CTAACCTGATAAATTCCACC+AGG 0.648952 1.2:-32013020 None:intergenic
AGTACTTGCAATGTCTAATG+CGG 0.649453 1.2:-32012772 None:intergenic
AAAATCGAATATTAAACCAG+AGG 0.667578 1.2:+32012474 MS.gene41291:CDS
GTTAGTGCCGGTGATGACAA+TGG 0.675983 1.2:+32013038 MS.gene41291:CDS
ACCTGATAAATTCCACCAGG+AGG 0.699430 1.2:-32013017 None:intergenic
TCTCACAGTCAAGTATTTAG+GGG 0.703014 1.2:-32012345 None:intergenic
GTGCCGGTGATGACAATGGT+GGG 0.709157 1.2:+32013042 MS.gene41291:CDS
TCAGGATTAAGTCCTCCTGG+TGG 0.711272 1.2:+32013005 MS.gene41291:CDS
AGTGCCGGTGATGACAATGG+TGG 0.761390 1.2:+32013041 MS.gene41291:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAGAAATATGCAAAA+TGG - chr1.2:32012587-32012606 None:intergenic 15.0%
!! ATATTATTTATGATACCATA+TGG + chr1.2:32013195-32013214 MS.gene41291:intron 15.0%
!!! TTTTAAATTCATAATTTCAG+TGG - chr1.2:32012114-32012133 None:intergenic 15.0%
!! AAAAACGATGAATAAAATCA+AGG - chr1.2:32013313-32013332 None:intergenic 20.0%
!! AATAGAAATAGTAGAATTTG+AGG - chr1.2:32013078-32013097 None:intergenic 20.0%
!! ATACCATATGGAAAAATATT+CGG + chr1.2:32013207-32013226 MS.gene41291:intron 20.0%
!! CAACTTATAAATAAGATAAG+TGG + chr1.2:32012625-32012644 MS.gene41291:intron 20.0%
!! CATAGAAAATAAATAACTAG+CGG - chr1.2:32013262-32013281 None:intergenic 20.0%
!! GTTAATACTGGTATAAATTT+GGG + chr1.2:32012726-32012745 MS.gene41291:CDS 20.0%
!! TGTATTGTTCATTAATTTCT+TGG + chr1.2:32012680-32012699 MS.gene41291:intron 20.0%
!! TTAATACTGGTATAAATTTG+GGG + chr1.2:32012727-32012746 MS.gene41291:CDS 20.0%
!!! AAGAGTATATTATTAAGTGT+TGG + chr1.2:32012804-32012823 MS.gene41291:CDS 20.0%
!!! AATTCTACTATTTCTATTCT+AGG + chr1.2:32013080-32013099 MS.gene41291:CDS 20.0%
!!! AGAAAGACACTATATATTTT+TGG - chr1.2:32012202-32012221 None:intergenic 20.0%
!!! CTAGTTATTTATTTTCTATG+TGG + chr1.2:32013262-32013281 MS.gene41291:intron 20.0%
!!! TTGATTTTATTCATCGTTTT+TGG + chr1.2:32013312-32013331 MS.gene41291:intron 20.0%
! AAAATCGAATATTAAACCAG+AGG + chr1.2:32012474-32012493 MS.gene41291:CDS 25.0%
! AAAGACCTTGTTAGAATTAA+AGG + chr1.2:32012236-32012255 MS.gene41291:CDS 25.0%
! AAATCGAATATTAAACCAGA+GGG + chr1.2:32012475-32012494 MS.gene41291:CDS 25.0%
! CTCAAAAGAAATAAAAGAAG+TGG + chr1.2:32012437-32012456 MS.gene41291:CDS 25.0%
! GGTTAATACTGGTATAAATT+TGG + chr1.2:32012725-32012744 MS.gene41291:CDS 25.0%
! TAATACTGGTATAAATTTGG+GGG + chr1.2:32012728-32012747 MS.gene41291:CDS 25.0%
! TGTTAAGAATCAACAATATG+AGG + chr1.2:32012391-32012410 MS.gene41291:CDS 25.0%
!! ATTTAAAACCTTCATTTGCT+TGG + chr1.2:32012126-32012145 MS.gene41291:CDS 25.0%
!!! GTTATTTATTTTCTATGTGG+AGG + chr1.2:32013265-32013284 MS.gene41291:intron 25.0%
AATCTCACAGTCAAGTATTT+AGG - chr1.2:32012350-32012369 None:intergenic 30.0%
ATCTCACAGTCAAGTATTTA+GGG - chr1.2:32012349-32012368 None:intergenic 30.0%
ATTGATGCAGCAATATGTAA+CGG - chr1.2:32012050-32012069 None:intergenic 30.0%
CGCTAAAATTGATACAGAAA+AGG - chr1.2:32013175-32013194 None:intergenic 30.0%
CTCTTCCTTTAATTCTAACA+AGG - chr1.2:32012244-32012263 None:intergenic 30.0%
GTTAGAATTAAAGGAAGAGA+GGG + chr1.2:32012245-32012264 MS.gene41291:CDS 30.0%
TGTTAGAATTAAAGGAAGAG+AGG + chr1.2:32012244-32012263 MS.gene41291:CDS 30.0%
TTACATATTGCTGCATCAAT+GGG + chr1.2:32012050-32012069 MS.gene41291:CDS 30.0%
! AGACCGAATATTTTTCCATA+TGG - chr1.2:32013213-32013232 None:intergenic 30.0%
! ATTTCTATTCTAGGAAATGC+TGG + chr1.2:32013089-32013108 MS.gene41291:CDS 30.0%
! CTTCATTTTGCAAGTCAAAA+TGG + chr1.2:32012278-32012297 MS.gene41291:CDS 30.0%
! CTTCTATTGTTGGTTAATAC+TGG + chr1.2:32012714-32012733 MS.gene41291:CDS 30.0%
! TAGTGCTGAAATATGCAAAA+TGG - chr1.2:32012516-32012535 None:intergenic 30.0%
! TGAATTTCTCTCTTTTTGTC+CGG + chr1.2:32012319-32012338 MS.gene41291:CDS 30.0%
! TGACATATCATCTCTTTTTG+TGG - chr1.2:32012892-32012911 None:intergenic 30.0%
! TTTCTATTCTAGGAAATGCT+GGG + chr1.2:32013090-32013109 MS.gene41291:CDS 30.0%
!!! TTTTGACTTGCAAAATGAAG+AGG - chr1.2:32012278-32012297 None:intergenic 30.0%
AGCTATTGAACAAGATTACC+TGG - chr1.2:32012550-32012569 None:intergenic 35.0%
AGTACTTGCAATGTCTAATG+CGG - chr1.2:32012775-32012794 None:intergenic 35.0%
ATCAAGGAATTGACATGTGT+AGG - chr1.2:32013297-32013316 None:intergenic 35.0%
CATATCTCGTTTGCATCAAT+GGG + chr1.2:32012074-32012093 MS.gene41291:CDS 35.0%
CTATTGAACAAGATTACCTG+GGG - chr1.2:32012548-32012567 None:intergenic 35.0%
GCTATTGAACAAGATTACCT+GGG - chr1.2:32012549-32012568 None:intergenic 35.0%
GTTACATATTGCTGCATCAA+TGG + chr1.2:32012049-32012068 MS.gene41291:CDS 35.0%
TCAAGGAATTGACATGTGTA+GGG - chr1.2:32013296-32013315 None:intergenic 35.0%
TCATATCTCGTTTGCATCAA+TGG + chr1.2:32012073-32012092 MS.gene41291:CDS 35.0%
TCTATATGCTCCAGAATGAA+TGG - chr1.2:32012005-32012024 None:intergenic 35.0%
TCTCACAGTCAAGTATTTAG+GGG - chr1.2:32012348-32012367 None:intergenic 35.0%
TGGAAAAATATTCGGTCTAG+TGG + chr1.2:32013215-32013234 MS.gene41291:intron 35.0%
TGGTTCATTTCTGTTAGTCA+TGG + chr1.2:32013332-32013351 MS.gene41291:intron 35.0%
! CATTAATTTCTTGGTAGCAC+AGG + chr1.2:32012689-32012708 MS.gene41291:intron 35.0%
! TGTAACGGAGTTTCAACAAA+TGG - chr1.2:32012035-32012054 None:intergenic 35.0%
! TTTAGCTTCCAAGCAAATGA+AGG - chr1.2:32012137-32012156 None:intergenic 35.0%
! TTTTGCAAGTCAAAATGGTG+AGG + chr1.2:32012283-32012302 MS.gene41291:CDS 35.0%
! TTTTTCATAGCGAGATGGAT+GGG - chr1.2:32012176-32012195 None:intergenic 35.0%
AAATTTGGGGGCAAAGAACA+AGG + chr1.2:32012740-32012759 MS.gene41291:CDS 40.0%
CAAGGAATTGACATGTGTAG+GGG - chr1.2:32013295-32013314 None:intergenic 40.0%
CCAGCTAACAAGTACTTGAA+GGG - chr1.2:32012417-32012436 None:intergenic 40.0%
CTAACCTGATAAATTCCACC+AGG - chr1.2:32013023-32013042 None:intergenic 40.0%
CTTCCTCAATTACTGCGTAA+AGG - chr1.2:32011980-32011999 None:intergenic 40.0%
GGAATTTATCAGGTTAGTGC+CGG + chr1.2:32013026-32013045 MS.gene41291:CDS 40.0%
GTCAAGTATTTAGGGGAATC+CGG - chr1.2:32012341-32012360 None:intergenic 40.0%
TCTCCTTTACGCAGTAATTG+AGG + chr1.2:32011974-32011993 MS.gene41291:CDS 40.0%
TGAGGAAGATCCATTCATTC+TGG + chr1.2:32011992-32012011 MS.gene41291:CDS 40.0%
TTAAACCAGAGGGATAAAGC+AGG + chr1.2:32012485-32012504 MS.gene41291:CDS 40.0%
! GTTTTTCATAGCGAGATGGA+TGG - chr1.2:32012177-32012196 None:intergenic 40.0%
! TTTTCATAGCGAGATGGATG+GGG - chr1.2:32012175-32012194 None:intergenic 40.0%
AAGAAGTGGCGCTCAAAAAC+TGG + chr1.2:32012451-32012470 MS.gene41291:CDS 45.0%
ACCTGATAAATTCCACCAGG+AGG - chr1.2:32013020-32013039 None:intergenic 45.0%
AGCACAGGCACTTCTATTGT+TGG + chr1.2:32012704-32012723 MS.gene41291:intron 45.0%
CAATCAGGATTAAGTCCTCC+TGG + chr1.2:32013002-32013021 MS.gene41291:CDS 45.0%
CAGATGAACAACGCAACACT+TGG + chr1.2:32012943-32012962 MS.gene41291:CDS 45.0%
GAATCAGCGACTTCTAAGCT+AGG - chr1.2:32012837-32012856 None:intergenic 45.0%
GCAACTGCGATCTATCAATC+AGG + chr1.2:32012987-32013006 MS.gene41291:CDS 45.0%
GCCAGCTAACAAGTACTTGA+AGG - chr1.2:32012418-32012437 None:intergenic 45.0%
GCTTGGAAGCTAAATCTCCA+AGG + chr1.2:32012143-32012162 MS.gene41291:CDS 45.0%
TCCTCCTGGTGGAATTTATC+AGG + chr1.2:32013016-32013035 MS.gene41291:CDS 45.0%
! CCCTTCAAGTACTTGTTAGC+TGG + chr1.2:32012414-32012433 MS.gene41291:CDS 45.0%
!!! GGTCGTTTTTCATAGCGAGA+TGG - chr1.2:32012181-32012200 None:intergenic 45.0%
!!! ATTTCTTAATTTATTTTTTT+TGG + chr1.2:32012595-32012614 MS.gene41291:intron 5.0%
CTAGCGGTAAACCAACCCAT+TGG - chr1.2:32013246-32013265 None:intergenic 50.0%
GGTCTAGTGGCTTCTCCAAT+GGG + chr1.2:32013228-32013247 MS.gene41291:intron 50.0%
GTTCCCACCATTGTCATCAC+CGG - chr1.2:32013048-32013067 None:intergenic 50.0%
TAGTGGCTTCTCCAATGGGT+TGG + chr1.2:32013232-32013251 MS.gene41291:intron 50.0%
TCAGGATTAAGTCCTCCTGG+TGG + chr1.2:32013005-32013024 MS.gene41291:CDS 50.0%
TGTTGCCTGCTTTATCCCTC+TGG - chr1.2:32012493-32012512 None:intergenic 50.0%
! GCTGGGAAATCAGTCTTGTC+AGG + chr1.2:32013107-32013126 MS.gene41291:CDS 50.0%
!! GTTAGTGCCGGTGATGACAA+TGG + chr1.2:32013038-32013057 MS.gene41291:CDS 50.0%
AGCACTAAGTAGTGAGCCCC+AGG + chr1.2:32012529-32012548 MS.gene41291:CDS 55.0%
CGGTCTAGTGGCTTCTCCAA+TGG + chr1.2:32013227-32013246 MS.gene41291:intron 55.0%
CTGAAAGCTGCAGCTCAGGA+AGG + chr1.2:32011942-32011961 MS.gene41291:CDS 55.0%
GATGGATGGGGCTGAATCCT+TGG - chr1.2:32012163-32012182 None:intergenic 55.0%
GCACACGTGCACAAAGACTC+AGG + chr1.2:32012859-32012878 MS.gene41291:CDS 55.0%
! GTGCCGGTGATGACAATGGT+GGG + chr1.2:32013042-32013061 MS.gene41291:CDS 55.0%
!! AGTGCCGGTGATGACAATGG+TGG + chr1.2:32013041-32013060 MS.gene41291:CDS 55.0%
GCAGCTGAAAGCTGCAGCTC+AGG + chr1.2:32011938-32011957 MS.gene41291:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 32011918 32013391 32011918 ID=MS.gene41291
chr1.2 mRNA 32011918 32013391 32011918 ID=MS.gene41291.t1;Parent=MS.gene41291
chr1.2 exon 32011918 32012550 32011918 ID=MS.gene41291.t1.exon1;Parent=MS.gene41291.t1
chr1.2 CDS 32011918 32012550 32011918 ID=cds.MS.gene41291.t1;Parent=MS.gene41291.t1
chr1.2 exon 32012711 32013162 32012711 ID=MS.gene41291.t1.exon2;Parent=MS.gene41291.t1
chr1.2 CDS 32012711 32013162 32012711 ID=cds.MS.gene41291.t1;Parent=MS.gene41291.t1
chr1.2 exon 32013376 32013391 32013376 ID=MS.gene41291.t1.exon3;Parent=MS.gene41291.t1
chr1.2 CDS 32013376 32013391 32013376 ID=cds.MS.gene41291.t1;Parent=MS.gene41291.t1
Gene Sequence

>MS.gene41291

ATGAACACAAGTAATTGTGAGCAGCTGAAAGCTGCAGCTCAGGAAGGTGATATAGATCTCCTTTACGCAGTAATTGAGGAAGATCCATTCATTCTGGAGCATATAGATTTGATACCATTTGTTGAAACTCCGTTACATATTGCTGCATCAATGGGTCATATCTCGTTTGCATCAATGGGTCATATCTCGTTTACCACTGAAATTATGAATTTAAAACCTTCATTTGCTTGGAAGCTAAATCTCCAAGGATTCAGCCCCATCCATCTCGCTATGAAAAACGACCAAAAATATATAGTGTCTTTCTTTGTGTACAACAATAAAGACCTTGTTAGAATTAAAGGAAGAGAGGGCTTAACTCCTCTTCATTTTGCAAGTCAAAATGGTGAGGTTGAACTTTTAGCTGAATTTCTCTCTTTTTGTCCGGATTCCCCTAAATACTTGACTGTGAGATTCGAGACTGCACTGCATATTGCTGTTAAGAATCAACAATATGAGGCCCTTCAAGTACTTGTTAGCTGGCTCAAAAGAAATAAAAGAAGTGGCGCTCAAAAACTGGAAAATCGAATATTAAACCAGAGGGATAAAGCAGGCAACACCATTTTGCATATTTCAGCACTAAGTAGTGAGCCCCAGGTAATCTTGTTCAATAGCTAAAATCATATGTCTCCATTTTGCATATTTCTTAATTTATTTTTTTTGGTGCTTTACAACTTATAAATAAGATAAGTGGCTTAGTTGCTAACATGAATGATCTCTAACAATTGTATTGTTCATTAATTTCTTGGTAGCACAGGCACTTCTATTGTTGGTTAATACTGGTATAAATTTGGGGGCAAAGAACAAGGAGAACAAAACCGCATTAGACATTGCAAGTACTGCAGAGATCAAGAGTATATTATTAAGTGTTGGAGAAAAACCTAGCTTAGAAGTCGCTGATTCTCGCACACGTGCACAAAGACTCAGGTCAAAGACCACAAAAAGAGATGATATGTCAACTTATGTAAATCGCATTAAAACAAATATAACAGATGAACAACGCAACACTTGGTTGATAGTTGCAACTCTTGTTGCAACTGCGATCTATCAATCAGGATTAAGTCCTCCTGGTGGAATTTATCAGGTTAGTGCCGGTGATGACAATGGTGGGAACATCACTTCCTCAAATTCTACTATTTCTATTCTAGGAAATGCTGGGAAATCAGTCTTGTCAGGATATGAATTCTTTTTGTTTTTATTTGTAAATATGTATGTATTCCTTTTCTGTATCAATTTTAGCGATATTATTTATGATACCATATGGAAAAATATTCGGTCTAGTGGCTTCTCCAATGGGTTGGTTTACCGCTAGTTATTTATTTTCTATGTGGAGGATATCCCCTACACATGTCAATTCCTTGATTTTATTCATCGTTTTTGGTTCATTTCTGTTAGTCATGGTGATTGACGTCATTGTTGCAGTGTACCCAAGTCTTAA
Protein sequence

>MS.gene41291.t1

MNTSNCEQLKAAAQEGDIDLLYAVIEEDPFILEHIDLIPFVETPLHIAASMGHISFASMGHISFTTEIMNLKPSFAWKLNLQGFSPIHLAMKNDQKYIVSFFVYNNKDLVRIKGREGLTPLHFASQNGEVELLAEFLSFCPDSPKYLTVRFETALHIAVKNQQYEALQVLVSWLKRNKRSGAQKLENRILNQRDKAGNTILHISALSSEPQALLLLVNTGINLGAKNKENKTALDIASTAEIKSILLSVGEKPSLEVADSRTRAQRLRSKTTKRDDMSTYVNRIKTNITDEQRNTWLIVATLVATAIYQSGLSPPGGIYQVSAGDDNGGNITSSNSTISILGNAGKSVLSGYEFFLFLFVNIVPKS