Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038519.t1 | AES77856.1 | 70.1 | 328 | 79 | 3 | 4 | 318 | 3 | 324 | 1.40E-116 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038519.t1 | Q8GYH5 | 25.3 | 304 | 209 | 4 | 7 | 294 | 2 | 303 | 3.3e-18 | 94.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038519.t1 | G7KSX2 | 70.1 | 328 | 79 | 3 | 4 | 318 | 3 | 324 | 1.0e-116 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038519.t1 | MTR_8g039620 | 70.181 | 332 | 84 | 3 | 2 | 318 | 6 | 337 | 9.43e-162 | 458 |
| MS.gene038519.t1 | MTR_8g072510 | 73.585 | 318 | 73 | 3 | 1 | 308 | 1 | 317 | 5.79e-161 | 457 |
| MS.gene038519.t1 | MTR_7g021090 | 71.207 | 323 | 74 | 3 | 4 | 317 | 3 | 315 | 1.22e-160 | 454 |
| MS.gene038519.t1 | MTR_1g059930 | 69.968 | 313 | 85 | 1 | 8 | 311 | 10 | 322 | 1.14e-154 | 440 |
| MS.gene038519.t1 | MTR_3g016210 | 67.372 | 331 | 88 | 2 | 1 | 311 | 1 | 331 | 4.23e-152 | 434 |
| MS.gene038519.t1 | MTR_8g062410 | 68.168 | 333 | 83 | 5 | 1 | 318 | 1 | 325 | 1.51e-147 | 423 |
| MS.gene038519.t1 | MTR_8g073260 | 62.893 | 318 | 108 | 2 | 1 | 308 | 1 | 318 | 9.08e-140 | 403 |
| MS.gene038519.t1 | MTR_7g451420 | 66.346 | 312 | 94 | 3 | 4 | 305 | 3 | 313 | 1.09e-139 | 398 |
| MS.gene038519.t1 | MTR_8g068990 | 65.049 | 309 | 82 | 4 | 8 | 304 | 10 | 304 | 3.47e-135 | 392 |
| MS.gene038519.t1 | MTR_8g069880 | 64.103 | 312 | 99 | 5 | 6 | 306 | 3 | 312 | 2.62e-125 | 367 |
| MS.gene038519.t1 | MTR_8g467780 | 57.994 | 319 | 113 | 4 | 8 | 306 | 9 | 326 | 1.40e-118 | 349 |
| MS.gene038519.t1 | MTR_8g040930 | 66.038 | 265 | 78 | 2 | 52 | 304 | 1 | 265 | 6.34e-118 | 345 |
| MS.gene038519.t1 | MTR_8g041240 | 66.038 | 265 | 78 | 2 | 52 | 304 | 1 | 265 | 6.34e-118 | 345 |
| MS.gene038519.t1 | MTR_8g066670 | 60.568 | 317 | 111 | 5 | 1 | 306 | 1067 | 1380 | 1.24e-114 | 362 |
| MS.gene038519.t1 | MTR_3g105650 | 52.258 | 310 | 133 | 3 | 7 | 301 | 2 | 311 | 6.60e-105 | 313 |
| MS.gene038519.t1 | MTR_8g073275 | 43.465 | 329 | 104 | 6 | 52 | 308 | 1 | 319 | 6.21e-73 | 232 |
| MS.gene038519.t1 | MTR_7g099580 | 27.667 | 300 | 175 | 7 | 22 | 316 | 24 | 286 | 1.78e-31 | 120 |
| MS.gene038519.t1 | MTR_1g069110 | 30.065 | 306 | 190 | 6 | 10 | 306 | 18 | 308 | 2.75e-31 | 122 |
| MS.gene038519.t1 | MTR_7g099570 | 28.700 | 223 | 145 | 3 | 10 | 227 | 9 | 222 | 3.41e-24 | 103 |
| MS.gene038519.t1 | MTR_2g101320 | 30.769 | 195 | 120 | 3 | 38 | 229 | 134 | 316 | 2.97e-21 | 94.7 |
| MS.gene038519.t1 | MTR_1g115575 | 24.104 | 307 | 189 | 6 | 45 | 319 | 169 | 463 | 5.99e-20 | 90.9 |
| MS.gene038519.t1 | MTR_7g117620 | 26.333 | 300 | 177 | 7 | 45 | 312 | 119 | 406 | 6.47e-20 | 90.5 |
| MS.gene038519.t1 | MTR_2g101310 | 29.474 | 190 | 123 | 3 | 41 | 229 | 137 | 316 | 1.09e-16 | 81.3 |
| MS.gene038519.t1 | MTR_2g101310 | 29.474 | 190 | 123 | 3 | 41 | 229 | 137 | 316 | 1.39e-16 | 80.5 |
| MS.gene038519.t1 | MTR_4g062100 | 25.385 | 260 | 162 | 6 | 5 | 256 | 69 | 304 | 5.86e-15 | 75.9 |
| MS.gene038519.t1 | MTR_7g100390 | 24.262 | 305 | 185 | 6 | 45 | 316 | 87 | 378 | 5.87e-15 | 75.9 |
| MS.gene038519.t1 | MTR_2g096190 | 23.410 | 346 | 211 | 9 | 5 | 313 | 65 | 393 | 1.35e-14 | 74.7 |
| MS.gene038519.t1 | MTR_2g033050 | 27.841 | 176 | 115 | 4 | 61 | 232 | 217 | 384 | 2.65e-12 | 67.4 |
| MS.gene038519.t1 | MTR_7g100430 | 21.260 | 381 | 222 | 11 | 5 | 310 | 67 | 444 | 3.07e-12 | 67.4 |
| MS.gene038519.t1 | MTR_6g027840 | 28.426 | 197 | 127 | 8 | 45 | 231 | 246 | 438 | 3.47e-12 | 67.4 |
| MS.gene038519.t1 | MTR_2g096760 | 25.676 | 222 | 133 | 8 | 5 | 210 | 10 | 215 | 2.66e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038519.t1 | AT4G10720 | 41.888 | 339 | 160 | 4 | 7 | 318 | 2 | 330 | 5.42e-81 | 253 |
| MS.gene038519.t1 | AT4G10720 | 42.202 | 327 | 152 | 4 | 7 | 306 | 2 | 318 | 1.32e-80 | 251 |
| MS.gene038519.t1 | AT5G15500 | 41.390 | 331 | 167 | 8 | 7 | 315 | 2 | 327 | 2.19e-72 | 231 |
| MS.gene038519.t1 | AT1G14500 | 37.188 | 320 | 183 | 4 | 7 | 308 | 2 | 321 | 4.64e-70 | 224 |
| MS.gene038519.t1 | AT1G14480 | 39.009 | 323 | 174 | 5 | 7 | 308 | 2 | 322 | 3.48e-69 | 222 |
| MS.gene038519.t1 | AT5G54620 | 39.697 | 330 | 180 | 4 | 7 | 317 | 2 | 331 | 1.48e-68 | 220 |
| MS.gene038519.t1 | AT5G54610 | 36.741 | 313 | 164 | 6 | 7 | 295 | 2 | 304 | 8.97e-63 | 205 |
| MS.gene038519.t1 | AT1G14480 | 34.967 | 306 | 167 | 5 | 7 | 308 | 2 | 279 | 3.90e-52 | 177 |
| MS.gene038519.t1 | AT5G15500 | 37.333 | 225 | 115 | 8 | 112 | 315 | 2 | 221 | 6.86e-32 | 122 |
| MS.gene038519.t1 | AT5G51160 | 28.727 | 275 | 157 | 6 | 64 | 307 | 35 | 301 | 1.20e-29 | 117 |
| MS.gene038519.t1 | AT4G03500 | 25.574 | 305 | 161 | 8 | 44 | 301 | 217 | 502 | 3.03e-21 | 94.7 |
| MS.gene038519.t1 | AT4G03500 | 25.574 | 305 | 161 | 8 | 44 | 301 | 194 | 479 | 3.68e-21 | 94.4 |
| MS.gene038519.t1 | AT4G03500 | 25.574 | 305 | 161 | 8 | 44 | 301 | 194 | 479 | 3.68e-21 | 94.4 |
| MS.gene038519.t1 | AT1G34050 | 25.094 | 267 | 155 | 6 | 66 | 304 | 174 | 423 | 1.92e-18 | 86.3 |
| MS.gene038519.t1 | AT1G07710 | 23.768 | 345 | 216 | 7 | 5 | 316 | 65 | 395 | 3.85e-16 | 79.3 |
| MS.gene038519.t1 | AT1G07710 | 23.768 | 345 | 216 | 7 | 5 | 316 | 65 | 395 | 3.85e-16 | 79.3 |
| MS.gene038519.t1 | AT3G12360 | 22.801 | 307 | 193 | 6 | 45 | 319 | 155 | 449 | 6.73e-16 | 78.6 |
| MS.gene038519.t1 | AT3G12360 | 23.875 | 289 | 176 | 6 | 45 | 301 | 167 | 443 | 7.40e-16 | 78.6 |
| MS.gene038519.t1 | AT3G09550 | 24.924 | 329 | 192 | 11 | 10 | 301 | 147 | 457 | 2.36e-15 | 77.0 |
| MS.gene038519.t1 | AT3G09550 | 24.924 | 329 | 192 | 11 | 10 | 301 | 147 | 457 | 2.36e-15 | 77.0 |
| MS.gene038519.t1 | AT5G54700 | 29.808 | 208 | 115 | 7 | 102 | 304 | 23 | 204 | 2.46e-15 | 76.3 |
| MS.gene038519.t1 | AT3G09550 | 24.924 | 329 | 192 | 11 | 10 | 301 | 154 | 464 | 3.07e-15 | 76.6 |
| MS.gene038519.t1 | AT2G01680 | 26.238 | 202 | 135 | 3 | 45 | 244 | 97 | 286 | 4.92e-15 | 75.9 |
| MS.gene038519.t1 | AT4G03460 | 26.087 | 276 | 142 | 8 | 76 | 306 | 232 | 490 | 1.05e-14 | 75.1 |
| MS.gene038519.t1 | AT4G03460 | 26.087 | 276 | 142 | 8 | 76 | 306 | 200 | 458 | 1.14e-14 | 75.1 |
| MS.gene038519.t1 | AT2G31820 | 24.653 | 288 | 172 | 8 | 45 | 300 | 227 | 501 | 1.70e-14 | 74.7 |
| MS.gene038519.t1 | AT4G03480 | 24.675 | 308 | 169 | 9 | 10 | 302 | 360 | 619 | 4.32e-14 | 73.2 |
| MS.gene038519.t1 | AT4G03480 | 24.675 | 308 | 169 | 9 | 10 | 302 | 357 | 616 | 5.27e-14 | 73.2 |
| MS.gene038519.t1 | AT5G60070 | 21.856 | 334 | 204 | 9 | 7 | 300 | 74 | 390 | 5.43e-14 | 72.8 |
| MS.gene038519.t1 | AT4G03450 | 23.899 | 318 | 158 | 8 | 10 | 302 | 227 | 485 | 1.06e-13 | 72.0 |
| MS.gene038519.t1 | AT4G03490 | 24.917 | 301 | 173 | 9 | 10 | 301 | 201 | 457 | 1.28e-13 | 72.0 |
| MS.gene038519.t1 | AT4G03490 | 24.917 | 301 | 173 | 9 | 10 | 301 | 211 | 467 | 1.35e-13 | 72.0 |
| MS.gene038519.t1 | AT4G03450 | 23.899 | 318 | 158 | 8 | 10 | 302 | 227 | 485 | 1.51e-13 | 71.6 |
| MS.gene038519.t1 | AT4G03490 | 24.917 | 301 | 173 | 9 | 10 | 301 | 211 | 467 | 1.51e-13 | 71.6 |
| MS.gene038519.t1 | AT1G03670 | 29.545 | 220 | 110 | 6 | 102 | 301 | 279 | 473 | 1.68e-13 | 71.6 |
| MS.gene038519.t1 | AT1G05640 | 25.141 | 354 | 203 | 10 | 7 | 300 | 114 | 465 | 1.79e-13 | 71.6 |
| MS.gene038519.t1 | AT1G10340 | 23.510 | 302 | 148 | 5 | 44 | 304 | 169 | 428 | 7.03e-13 | 69.7 |
| MS.gene038519.t1 | AT1G10340 | 23.510 | 302 | 148 | 5 | 44 | 304 | 173 | 432 | 7.32e-13 | 69.7 |
| MS.gene038519.t1 | AT5G02620 | 21.264 | 348 | 225 | 6 | 5 | 316 | 55 | 389 | 1.15e-12 | 68.9 |
| MS.gene038519.t1 | AT5G02620 | 21.264 | 348 | 225 | 6 | 5 | 316 | 55 | 389 | 1.15e-12 | 68.9 |
| MS.gene038519.t1 | AT5G02620 | 21.264 | 348 | 225 | 6 | 5 | 316 | 55 | 389 | 1.15e-12 | 68.9 |
| MS.gene038519.t1 | AT5G50140 | 25.854 | 205 | 126 | 5 | 41 | 229 | 26 | 220 | 3.09e-12 | 67.4 |
| MS.gene038519.t1 | AT4G05040 | 25.287 | 261 | 180 | 4 | 46 | 302 | 277 | 526 | 2.42e-11 | 65.1 |
| MS.gene038519.t1 | AT4G05040 | 25.287 | 261 | 180 | 4 | 46 | 302 | 277 | 526 | 2.42e-11 | 65.1 |
| MS.gene038519.t1 | AT4G05040 | 25.287 | 261 | 180 | 4 | 46 | 302 | 277 | 526 | 2.42e-11 | 65.1 |
| MS.gene038519.t1 | AT4G05040 | 25.287 | 261 | 180 | 4 | 46 | 302 | 277 | 526 | 2.42e-11 | 65.1 |
| MS.gene038519.t1 | AT4G05040 | 25.287 | 261 | 180 | 4 | 46 | 302 | 277 | 526 | 2.42e-11 | 65.1 |
| MS.gene038519.t1 | AT4G05040 | 25.287 | 261 | 180 | 4 | 46 | 302 | 277 | 526 | 2.42e-11 | 65.1 |
| MS.gene038519.t1 | AT4G05040 | 25.287 | 261 | 180 | 4 | 46 | 302 | 277 | 526 | 2.42e-11 | 65.1 |
Find 64 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGACCTTGTTAGAGTTAA+AGG | 0.117136 | 8.4:+36753563 | MS.gene038519:CDS |
| GCCAGCTAACAAGTACTTTA+AGG | 0.142664 | 8.4:-36753742 | None:intergenic |
| TCAAGATGATCCATCCATTT+TGG | 0.183666 | 8.4:+36753343 | MS.gene038519:CDS |
| GTAATATGTCAACTTATTTA+AGG | 0.200563 | 8.4:+36755190 | MS.gene038519:CDS |
| TTTACATATTGCTGCATCTA+TGG | 0.203638 | 8.4:+36753400 | MS.gene038519:CDS |
| CTTCATTATGCAAGTCAAAT+TGG | 0.280737 | 8.4:+36753605 | MS.gene038519:CDS |
| TGACATATTACCTCTAATTC+TGG | 0.294950 | 8.4:-36755178 | None:intergenic |
| TATGATACCAAGGGGAATAA+TGG | 0.296385 | 8.4:+36755491 | MS.gene038519:intron |
| GGCGCTCAAAAGCTGGAAAA+TGG | 0.305181 | 8.4:+36753785 | MS.gene038519:CDS |
| GGATGGGGCTGGATCCTTGC+GGG | 0.330635 | 8.4:-36753484 | None:intergenic |
| TAAATCTATACGCTCCAAAA+TGG | 0.335742 | 8.4:-36753357 | None:intergenic |
| CAGCGCAGTCTCACCTCTTA+TGG | 0.353195 | 8.4:-36753687 | None:intergenic |
| ATGATACCAAGGGGAATAAT+GGG | 0.355754 | 8.4:+36755492 | MS.gene038519:intron |
| TTCATAATTTCGGTGGCAAA+TGG | 0.365858 | 8.4:-36753431 | None:intergenic |
| TTACCTGCAGCTCACTCCTT+AGG | 0.369288 | 8.4:-36753859 | None:intergenic |
| TCATCAAAGACCAGAATTAG+AGG | 0.384461 | 8.4:+36755168 | MS.gene038519:CDS |
| TAGGGCTGAAATATGCAAAA+TGG | 0.395625 | 8.4:-36753840 | None:intergenic |
| ATTGAATACTTGACCATAAG+AGG | 0.401389 | 8.4:+36753674 | MS.gene038519:CDS |
| ATTTCTAGTGGCTTCTCCAA+TGG | 0.409439 | 8.4:+36755515 | MS.gene038519:CDS |
| TTTCTAGTGGCTTCTCCAAT+GGG | 0.416509 | 8.4:+36755516 | MS.gene038519:CDS |
| CAATCGGTTATCATTATTTG+TGG | 0.423782 | 8.4:-36753273 | None:intergenic |
| CCCTTAAAGTACTTGTTAGC+TGG | 0.441660 | 8.4:+36753741 | MS.gene038519:CDS |
| CCAGCTAACAAGTACTTTAA+GGG | 0.442710 | 8.4:-36753741 | None:intergenic |
| GTCAAGTATTCAATAGATTC+CGG | 0.443534 | 8.4:-36753665 | None:intergenic |
| TACCTGCAGCTCACTCCTTA+GGG | 0.445883 | 8.4:-36753858 | None:intergenic |
| TGTAAAGGAGTTTCAACAAA+TGG | 0.448723 | 8.4:-36753383 | None:intergenic |
| ACGGCGAGGCGCTCAAAAGC+TGG | 0.450141 | 8.4:+36753778 | MS.gene038519:CDS |
| CTTGAGCTGCAGCTTTCAAT+CGG | 0.454866 | 8.4:-36753289 | None:intergenic |
| TCTAATATACTCTTGATCTC+TGG | 0.462110 | 8.4:-36755108 | None:intergenic |
| AAATTTGAACTCAATGAACT+TGG | 0.463199 | 8.4:+36755053 | MS.gene038519:CDS |
| AGCCCTAAGGAGTGAGCTGC+AGG | 0.472202 | 8.4:+36753856 | MS.gene038519:CDS |
| TCATAATTTCGGTGGCAAAT+GGG | 0.485094 | 8.4:-36753430 | None:intergenic |
| TTTAGCTTCCATGCAAATGA+AGG | 0.490376 | 8.4:-36753461 | None:intergenic |
| ATTTAAAACCTTCATTTGCA+TGG | 0.492498 | 8.4:+36753453 | MS.gene038519:CDS |
| TGTACAGGCACTTCAATTGT+TGG | 0.493166 | 8.4:+36755017 | MS.gene038519:intron |
| TTACATATTGCTGCATCTAT+GGG | 0.495030 | 8.4:+36753401 | MS.gene038519:CDS |
| TAGTGGCTTCTCCAATGGGA+TGG | 0.498340 | 8.4:+36755520 | MS.gene038519:CDS |
| AATCGGTTATCATTATTTGT+GGG | 0.501672 | 8.4:-36753272 | None:intergenic |
| GCAACTGCGATCTATCAATC+AGG | 0.505224 | 8.4:+36755273 | MS.gene038519:CDS |
| CTCTTCCTTTAACTCTAACA+AGG | 0.513638 | 8.4:-36753568 | None:intergenic |
| TGTTAAGTACGAACAATATG+AGG | 0.526462 | 8.4:+36753718 | MS.gene038519:CDS |
| TCTATACGCTCCAAAATGGA+TGG | 0.544845 | 8.4:-36753353 | None:intergenic |
| TTGAAAGCTGCAGCTCAAGC+AGG | 0.545828 | 8.4:+36753293 | MS.gene038519:CDS |
| CATAGCGAGATGGATGGGGC+TGG | 0.551606 | 8.4:-36753495 | None:intergenic |
| TTTGCATAGCGAGATGGATG+GGG | 0.552573 | 8.4:-36753499 | None:intergenic |
| GGGAATAATGGGATTTCTAG+TGG | 0.553942 | 8.4:+36755503 | MS.gene038519:CDS |
| ATAGATGCAGCAATATGTAA+AGG | 0.555251 | 8.4:-36753398 | None:intergenic |
| TTAAACAAGAGGGACGATGC+AGG | 0.562233 | 8.4:+36753812 | MS.gene038519:CDS |
| ATTTGACTTGCATAATGAAG+AGG | 0.563135 | 8.4:-36753602 | None:intergenic |
| CAGAGGAGAAACGTAACACT+TGG | 0.573843 | 8.4:+36755229 | MS.gene038519:CDS |
| TGGATGGGGCTGGATCCTTG+CGG | 0.586497 | 8.4:-36753485 | None:intergenic |
| CTAACCTGATAAATTCCACC+AGG | 0.595881 | 8.4:-36755306 | None:intergenic |
| AAATGGAATATTAAACAAGA+GGG | 0.596917 | 8.4:+36753802 | MS.gene038519:CDS |
| CTAGCGGTAAACCATCCCAT+TGG | 0.611170 | 8.4:-36755531 | None:intergenic |
| CTTGAGCTTATGTGCAAGTG+TGG | 0.611285 | 8.4:-36755145 | None:intergenic |
| AAAATGGAATATTAAACAAG+AGG | 0.615959 | 8.4:+36753801 | MS.gene038519:CDS |
| TTATGCAAGTCAAATTGGTG+AGG | 0.618646 | 8.4:+36753610 | MS.gene038519:CDS |
| CATCTTGAATCACTGTGTAG+AGG | 0.625838 | 8.4:-36753328 | None:intergenic |
| GCATGGAAGCTAAACCCGCA+AGG | 0.660983 | 8.4:+36753470 | MS.gene038519:CDS |
| TTGAGCTTATGTGCAAGTGT+GGG | 0.673038 | 8.4:-36755144 | None:intergenic |
| GATTAGAGCAAATATGACAG+AGG | 0.683809 | 8.4:+36755212 | MS.gene038519:CDS |
| AACCTGATAAATTCCACCAG+GGG | 0.693447 | 8.4:-36755304 | None:intergenic |
| TAACCTGATAAATTCCACCA+GGG | 0.695982 | 8.4:-36755305 | None:intergenic |
| ACCTGATAAATTCCACCAGG+GGG | 0.706697 | 8.4:-36755303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATGTTACATATTT+TGG | - | chr8.4:36754890-36754909 | None:intergenic | 10.0% |
| !! | AACAAAATCAACAAATTAAA+AGG | + | chr8.4:36754538-36754557 | MS.gene038519:intron | 15.0% |
| !! | AGAAAAAATGAAATATACAA+AGG | - | chr8.4:36753914-36753933 | None:intergenic | 15.0% |
| !! | ATTAAAAGGAAATATAGAAT+CGG | + | chr8.4:36754552-36754571 | MS.gene038519:intron | 15.0% |
| !!! | AGGTTTTAAATTCATAATTT+CGG | - | chr8.4:36753444-36753463 | None:intergenic | 15.0% |
| !!! | ATAAACATGGTTTTTATTTT+TGG | - | chr8.4:36754113-36754132 | None:intergenic | 15.0% |
| !!! | TTGAAATAATCTTATTTGAT+TGG | - | chr8.4:36754493-36754512 | None:intergenic | 15.0% |
| !! | AAAAAGAAATAGAAGATGAA+GGG | + | chr8.4:36754327-36754346 | MS.gene038519:intron | 20.0% |
| !! | AAAATGGAATATTAAACAAG+AGG | + | chr8.4:36753801-36753820 | MS.gene038519:CDS | 20.0% |
| !! | AAAATTCAAATGTTGTAAAG+AGG | + | chr8.4:36754511-36754530 | MS.gene038519:intron | 20.0% |
| !! | AAATGGAATATTAAACAAGA+GGG | + | chr8.4:36753802-36753821 | MS.gene038519:CDS | 20.0% |
| !! | ATTTCAGTAAATGTCATATT+TGG | - | chr8.4:36754056-36754075 | None:intergenic | 20.0% |
| !! | CTAGTATTTGATTATGATTA+GGG | - | chr8.4:36754782-36754801 | None:intergenic | 20.0% |
| !! | GTAATATGTCAACTTATTTA+AGG | + | chr8.4:36755190-36755209 | MS.gene038519:CDS | 20.0% |
| !! | TAAAAAGAAATAGAAGATGA+AGG | + | chr8.4:36754326-36754345 | MS.gene038519:intron | 20.0% |
| !! | TAGTATTTGATTATGATTAG+GGG | - | chr8.4:36754781-36754800 | None:intergenic | 20.0% |
| !! | TGTAAATATGTATTCCTTTA+CGG | + | chr8.4:36755446-36755465 | MS.gene038519:intron | 20.0% |
| !! | TTAAATGAAGTTACTACTAA+GGG | - | chr8.4:36754712-36754731 | None:intergenic | 20.0% |
| !!! | ATATATTTTATGATACCAAG+GGG | + | chr8.4:36755483-36755502 | MS.gene038519:intron | 20.0% |
| !!! | GATATATTTTATGATACCAA+GGG | + | chr8.4:36755482-36755501 | MS.gene038519:intron | 20.0% |
| !!! | TGTGATTTTAGTTATTGAAT+AGG | - | chr8.4:36753886-36753905 | None:intergenic | 20.0% |
| !!! | TTTTAAATTCATAATTTCGG+TGG | - | chr8.4:36753441-36753460 | None:intergenic | 20.0% |
| ! | AAAAGAAATAGAAGATGAAG+GGG | + | chr8.4:36754328-36754347 | MS.gene038519:intron | 25.0% |
| ! | AAATTTGAACTCAATGAACT+TGG | + | chr8.4:36755053-36755072 | MS.gene038519:CDS | 25.0% |
| ! | AATCGGTTATCATTATTTGT+GGG | - | chr8.4:36753275-36753294 | None:intergenic | 25.0% |
| ! | AATCTCAAAATGACATATCT+CGG | + | chr8.4:36754153-36754172 | MS.gene038519:intron | 25.0% |
| ! | AGAAGAAATAGTAGAATTTG+AGG | - | chr8.4:36755367-36755386 | None:intergenic | 25.0% |
| ! | AGTATTTGATTATGATTAGG+GGG | - | chr8.4:36754780-36754799 | None:intergenic | 25.0% |
| ! | ATAGAATCGGTATAATTAGA+AGG | + | chr8.4:36754565-36754584 | MS.gene038519:intron | 25.0% |
| ! | ATATCCGTAAATTAGATAAG+TGG | + | chr8.4:36754935-36754954 | MS.gene038519:intron | 25.0% |
| ! | ATGACACAAGTTTATAAACA+TGG | - | chr8.4:36754126-36754145 | None:intergenic | 25.0% |
| ! | CCTAATCATAATCAAATACT+AGG | + | chr8.4:36754780-36754799 | MS.gene038519:intron | 25.0% |
| ! | CCTAGTATTTGATTATGATT+AGG | - | chr8.4:36754783-36754802 | None:intergenic | 25.0% |
| ! | CTAACCACTTATCTAATTTA+CGG | - | chr8.4:36754942-36754961 | None:intergenic | 25.0% |
| ! | GTTAAATGAAGTTACTACTA+AGG | - | chr8.4:36754713-36754732 | None:intergenic | 25.0% |
| ! | TGTATTGTTCATTAACTACT+TGG | + | chr8.4:36754989-36755008 | MS.gene038519:intron | 25.0% |
| !! | ATTTAAAACCTTCATTTGCA+TGG | + | chr8.4:36753453-36753472 | MS.gene038519:CDS | 25.0% |
| !! | CGATATATTTTATGATACCA+AGG | + | chr8.4:36755481-36755500 | MS.gene038519:intron | 25.0% |
| !! | GACATTTACTGAAATTTTGA+CGG | + | chr8.4:36754061-36754080 | MS.gene038519:intron | 25.0% |
| !!! | GAAATGTGTTTTAAAAACCA+TGG | - | chr8.4:36754831-36754850 | None:intergenic | 25.0% |
| AAAGACCTTGTTAGAGTTAA+AGG | + | chr8.4:36753563-36753582 | MS.gene038519:CDS | 30.0% | |
| AACAGATAGTTCATTTCCAT+AGG | + | chr8.4:36754730-36754749 | MS.gene038519:intron | 30.0% | |
| ACAGATAGTTCATTTCCATA+GGG | + | chr8.4:36754731-36754750 | MS.gene038519:intron | 30.0% | |
| ATAGATGCAGCAATATGTAA+AGG | - | chr8.4:36753401-36753420 | None:intergenic | 30.0% | |
| ATTGAATACTTGACCATAAG+AGG | + | chr8.4:36753674-36753693 | MS.gene038519:CDS | 30.0% | |
| CAATCGGTTATCATTATTTG+TGG | - | chr8.4:36753276-36753295 | None:intergenic | 30.0% | |
| CTTCATTATGCAAGTCAAAT+TGG | + | chr8.4:36753605-36753624 | MS.gene038519:CDS | 30.0% | |
| GCAAAAAAACCAAAAACGTA+TGG | + | chr8.4:36753517-36753536 | MS.gene038519:CDS | 30.0% | |
| GTCAAGTATTCAATAGATTC+CGG | - | chr8.4:36753668-36753687 | None:intergenic | 30.0% | |
| TAAATCTATACGCTCCAAAA+TGG | - | chr8.4:36753360-36753379 | None:intergenic | 30.0% | |
| TCTAATATACTCTTGATCTC+TGG | - | chr8.4:36755111-36755130 | None:intergenic | 30.0% | |
| TGACATATTACCTCTAATTC+TGG | - | chr8.4:36755181-36755200 | None:intergenic | 30.0% | |
| TGCAAATTTGCGAATTATCA+TGG | - | chr8.4:36754462-36754481 | None:intergenic | 30.0% | |
| TGTAAAGGAGTTTCAACAAA+TGG | - | chr8.4:36753386-36753405 | None:intergenic | 30.0% | |
| TGTTAAGTACGAACAATATG+AGG | + | chr8.4:36753718-36753737 | MS.gene038519:CDS | 30.0% | |
| TTACATATTGCTGCATCTAT+GGG | + | chr8.4:36753401-36753420 | MS.gene038519:CDS | 30.0% | |
| TTTACATATTGCTGCATCTA+TGG | + | chr8.4:36753400-36753419 | MS.gene038519:CDS | 30.0% | |
| ! | GCTGGCTCAAAAAAAATAAA+CGG | + | chr8.4:36753759-36753778 | MS.gene038519:CDS | 30.0% |
| ! | GTTTTCCTGTGTGTATAAAT+TGG | - | chr8.4:36754240-36754259 | None:intergenic | 30.0% |
| ! | TAAATTTCTCTTTTCGTGTC+CGG | + | chr8.4:36753646-36753665 | MS.gene038519:CDS | 30.0% |
| !! | ATTTGACTTGCATAATGAAG+AGG | - | chr8.4:36753605-36753624 | None:intergenic | 30.0% |
| AATGAAGTTACTACTAAGGG+AGG | - | chr8.4:36754709-36754728 | None:intergenic | 35.0% | |
| ACCATCCAATTTATACACAC+AGG | + | chr8.4:36754232-36754251 | MS.gene038519:intron | 35.0% | |
| ATGATACCAAGGGGAATAAT+GGG | + | chr8.4:36755492-36755511 | MS.gene038519:intron | 35.0% | |
| CAGATAGTTCATTTCCATAG+GGG | + | chr8.4:36754732-36754751 | MS.gene038519:intron | 35.0% | |
| CCAGCTAACAAGTACTTTAA+GGG | - | chr8.4:36753744-36753763 | None:intergenic | 35.0% | |
| CTCAAAAAAAATAAACGGCG+AGG | + | chr8.4:36753764-36753783 | MS.gene038519:CDS | 35.0% | |
| CTCTTCCTTTAACTCTAACA+AGG | - | chr8.4:36753571-36753590 | None:intergenic | 35.0% | |
| CTTCTACTCCAAGAAATGTT+GGG | + | chr8.4:36755382-36755401 | MS.gene038519:intron | 35.0% | |
| GATTAGAGCAAATATGACAG+AGG | + | chr8.4:36755212-36755231 | MS.gene038519:CDS | 35.0% | |
| TAACCTGATAAATTCCACCA+GGG | - | chr8.4:36755308-36755327 | None:intergenic | 35.0% | |
| TAGGGCTGAAATATGCAAAA+TGG | - | chr8.4:36753843-36753862 | None:intergenic | 35.0% | |
| TATCATGGTACACTTGATTG+AGG | - | chr8.4:36754447-36754466 | None:intergenic | 35.0% | |
| TATGATACCAAGGGGAATAA+TGG | + | chr8.4:36755491-36755510 | MS.gene038519:intron | 35.0% | |
| TCATAATTTCGGTGGCAAAT+GGG | - | chr8.4:36753433-36753452 | None:intergenic | 35.0% | |
| TCATCAAAGACCAGAATTAG+AGG | + | chr8.4:36755168-36755187 | MS.gene038519:CDS | 35.0% | |
| TCCAAGAAATGTTGGGAAAT+CGG | + | chr8.4:36755389-36755408 | MS.gene038519:intron | 35.0% | |
| TCCTGTGTGTATAAATTGGA+TGG | - | chr8.4:36754236-36754255 | None:intergenic | 35.0% | |
| TCTTCTACTCCAAGAAATGT+TGG | + | chr8.4:36755381-36755400 | MS.gene038519:intron | 35.0% | |
| TTATGCAAGTCAAATTGGTG+AGG | + | chr8.4:36753610-36753629 | MS.gene038519:CDS | 35.0% | |
| TTCATAATTTCGGTGGCAAA+TGG | - | chr8.4:36753434-36753453 | None:intergenic | 35.0% | |
| ! | AACAAGTTGAAGCTAGATCT+TGG | - | chr8.4:36754661-36754680 | None:intergenic | 35.0% |
| ! | AGATCTATGAGTCACTCTTT+TGG | - | chr8.4:36754265-36754284 | None:intergenic | 35.0% |
| ! | TCAAGATGATCCATCCATTT+TGG | + | chr8.4:36753343-36753362 | MS.gene038519:CDS | 35.0% |
| ! | TCGGTCACGATTTGAATTTT+GGG | - | chr8.4:36753946-36753965 | None:intergenic | 35.0% |
| ! | TTTAGCTTCCATGCAAATGA+AGG | - | chr8.4:36753464-36753483 | None:intergenic | 35.0% |
| ! | TTTTGCATATTTCAGCCCTA+AGG | + | chr8.4:36753843-36753862 | MS.gene038519:CDS | 35.0% |
| !! | AGTTTTGTCAATATGCTTGC+CGG | - | chr8.4:36753992-36754011 | None:intergenic | 35.0% |
| AACCTGATAAATTCCACCAG+GGG | - | chr8.4:36755307-36755326 | None:intergenic | 40.0% | |
| AGAAATCCCATTATTCCCCT+TGG | - | chr8.4:36755501-36755520 | None:intergenic | 40.0% | |
| ATCAAATACTAGGTGCATCG+TGG | + | chr8.4:36754790-36754809 | MS.gene038519:intron | 40.0% | |
| CATCTTGAATCACTGTGTAG+AGG | - | chr8.4:36753331-36753350 | None:intergenic | 40.0% | |
| CGAACTAAAACATCCTAGTC+CGG | + | chr8.4:36753970-36753989 | MS.gene038519:intron | 40.0% | |
| CGCTATAACTGATACCGTAA+AGG | - | chr8.4:36755463-36755482 | None:intergenic | 40.0% | |
| CTAACCTGATAAATTCCACC+AGG | - | chr8.4:36755309-36755328 | None:intergenic | 40.0% | |
| CTTGGAGAGAAAAACAGCAT+TGG | + | chr8.4:36755071-36755090 | MS.gene038519:CDS | 40.0% | |
| GCCAGCTAACAAGTACTTTA+AGG | - | chr8.4:36753745-36753764 | None:intergenic | 40.0% | |
| GGAATTTATCAGGTTAGTGC+TGG | + | chr8.4:36755312-36755331 | MS.gene038519:intron | 40.0% | |
| GGTCGTCGTTATTATAACCA+TGG | + | chr8.4:36754811-36754830 | MS.gene038519:intron | 40.0% | |
| TCTATACGCTCCAAAATGGA+TGG | - | chr8.4:36753356-36753375 | None:intergenic | 40.0% | |
| TGTACAGGCACTTCAATTGT+TGG | + | chr8.4:36755017-36755036 | MS.gene038519:intron | 40.0% | |
| TTGAGCTTATGTGCAAGTGT+GGG | - | chr8.4:36755147-36755166 | None:intergenic | 40.0% | |
| TTGTGTGTTTCCCTTCTAGT+GGG | - | chr8.4:36754392-36754411 | None:intergenic | 40.0% | |
| ! | AACTACTTGGTAGCATGTAC+AGG | + | chr8.4:36755002-36755021 | MS.gene038519:intron | 40.0% |
| ! | ACCGATTTCCCAACATTTCT+TGG | - | chr8.4:36755393-36755412 | None:intergenic | 40.0% |
| ! | AGCGATACACCATACGTTTT+TGG | - | chr8.4:36753529-36753548 | None:intergenic | 40.0% |
| ! | CCCTTAAAGTACTTGTTAGC+TGG | + | chr8.4:36753741-36753760 | MS.gene038519:CDS | 40.0% |
| ! | GGGAATAATGGGATTTCTAG+TGG | + | chr8.4:36755503-36755522 | MS.gene038519:CDS | 40.0% |
| ! | GTCGGTCACGATTTGAATTT+TGG | - | chr8.4:36753947-36753966 | None:intergenic | 40.0% |
| ! | TTTCTAGTGGCTTCTCCAAT+GGG | + | chr8.4:36755516-36755535 | MS.gene038519:CDS | 40.0% |
| ! | TTTTGCATAGCGAGATGGAT+GGG | - | chr8.4:36753503-36753522 | None:intergenic | 40.0% |
| ! | TTTTTGCATAGCGAGATGGA+TGG | - | chr8.4:36753504-36753523 | None:intergenic | 40.0% |
| !! | AGTGCTGGTGATGACAATAA+TGG | + | chr8.4:36755327-36755346 | MS.gene038519:intron | 40.0% |
| !! | ATTTCTAGTGGCTTCTCCAA+TGG | + | chr8.4:36755515-36755534 | MS.gene038519:CDS | 40.0% |
| !! | TAAGTCACAAAGACTTGGTG+AGG | + | chr8.4:36754351-36754370 | MS.gene038519:intron | 40.0% |
| !!! | GGTTTTTTTGCATAGCGAGA+TGG | - | chr8.4:36753508-36753527 | None:intergenic | 40.0% |
| AACAACCATCACCCACTAGA+AGG | + | chr8.4:36754378-36754397 | MS.gene038519:intron | 45.0% | |
| ACAACCATCACCCACTAGAA+GGG | + | chr8.4:36754379-36754398 | MS.gene038519:intron | 45.0% | |
| ACCTGATAAATTCCACCAGG+GGG | - | chr8.4:36755306-36755325 | None:intergenic | 45.0% | |
| AGGGGTAAGTCACAAAGACT+TGG | + | chr8.4:36754346-36754365 | MS.gene038519:intron | 45.0% | |
| ATAGGGGTGACTCCATCTAA+CGG | + | chr8.4:36754748-36754767 | MS.gene038519:intron | 45.0% | |
| CACTAGAAGGGAAACACACA+AGG | + | chr8.4:36754391-36754410 | MS.gene038519:intron | 45.0% | |
| CAGAGGAGAAACGTAACACT+TGG | + | chr8.4:36755229-36755248 | MS.gene038519:CDS | 45.0% | |
| CTTGAGCTGCAGCTTTCAAT+CGG | - | chr8.4:36753292-36753311 | None:intergenic | 45.0% | |
| CTTGAGCTTATGTGCAAGTG+TGG | - | chr8.4:36755148-36755167 | None:intergenic | 45.0% | |
| CTTGTGTGTTTCCCTTCTAG+TGG | - | chr8.4:36754393-36754412 | None:intergenic | 45.0% | |
| GCAACTGCGATCTATCAATC+AGG | + | chr8.4:36755273-36755292 | MS.gene038519:CDS | 45.0% | |
| TACTAAGGGAGGTCACTCTT+TGG | - | chr8.4:36754698-36754717 | None:intergenic | 45.0% | |
| TTAAACAAGAGGGACGATGC+AGG | + | chr8.4:36753812-36753831 | MS.gene038519:CDS | 45.0% | |
| TTTGCATAGCGAGATGGATG+GGG | - | chr8.4:36753502-36753521 | None:intergenic | 45.0% | |
| !!! | GGATGTTTTAGTTCGTGCGT+CGG | - | chr8.4:36753965-36753984 | None:intergenic | 45.0% |
| CTAGCGGTAAACCATCCCAT+TGG | - | chr8.4:36755534-36755553 | None:intergenic | 50.0% | |
| GGCGCTCAAAAGCTGGAAAA+TGG | + | chr8.4:36753785-36753804 | MS.gene038519:CDS | 50.0% | |
| GTCAATATGCTTGCCGGACT+AGG | - | chr8.4:36753986-36754005 | None:intergenic | 50.0% | |
| GTTAGATGGAGTCACCCCTA+TGG | - | chr8.4:36754749-36754768 | None:intergenic | 50.0% | |
| TAAGGGAGGTCACTCTTTGG+AGG | - | chr8.4:36754695-36754714 | None:intergenic | 50.0% | |
| TACCTGCAGCTCACTCCTTA+GGG | - | chr8.4:36753861-36753880 | None:intergenic | 50.0% | |
| TAGGGGTGACTCCATCTAAC+GGG | + | chr8.4:36754749-36754768 | MS.gene038519:intron | 50.0% | |
| TAGTGGCTTCTCCAATGGGA+TGG | + | chr8.4:36755520-36755539 | MS.gene038519:CDS | 50.0% | |
| TCCCCCTGGTGGAATTTATC+AGG | + | chr8.4:36755302-36755321 | MS.gene038519:CDS | 50.0% | |
| TTACCTGCAGCTCACTCCTT+AGG | - | chr8.4:36753862-36753881 | None:intergenic | 50.0% | |
| TTGAAAGCTGCAGCTCAAGC+AGG | + | chr8.4:36753293-36753312 | MS.gene038519:CDS | 50.0% | |
| ! | GTTGGGAAATCGGTCTTGTC+AGG | + | chr8.4:36755399-36755418 | MS.gene038519:intron | 50.0% |
| ! | GTTTCCCTTCTAGTGGGTGA+TGG | - | chr8.4:36754386-36754405 | None:intergenic | 50.0% |
| AGGGGGAGTTACCCGTTAGA+TGG | - | chr8.4:36754763-36754782 | None:intergenic | 55.0% | |
| CAATCAGGATTGAGTCCCCC+TGG | + | chr8.4:36755288-36755307 | MS.gene038519:CDS | 55.0% | |
| CAGCGCAGTCTCACCTCTTA+TGG | - | chr8.4:36753690-36753709 | None:intergenic | 55.0% | |
| GCATGGAAGCTAAACCCGCA+AGG | + | chr8.4:36753470-36753489 | MS.gene038519:CDS | 55.0% | |
| AGCCCTAAGGAGTGAGCTGC+AGG | + | chr8.4:36753856-36753875 | MS.gene038519:CDS | 60.0% | |
| CATAGCGAGATGGATGGGGC+TGG | - | chr8.4:36753498-36753517 | None:intergenic | 60.0% | |
| TCAGGATTGAGTCCCCCTGG+TGG | + | chr8.4:36755291-36755310 | MS.gene038519:CDS | 60.0% | |
| TGGATGGGGCTGGATCCTTG+CGG | - | chr8.4:36753488-36753507 | None:intergenic | 60.0% | |
| GGATGGGGCTGGATCCTTGC+GGG | - | chr8.4:36753487-36753506 | None:intergenic | 65.0% | |
| ! | ACGGCGAGGCGCTCAAAAGC+TGG | + | chr8.4:36753778-36753797 | MS.gene038519:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 36753266 | 36755553 | 36753266 | ID=MS.gene038519 |
| chr8.4 | mRNA | 36753266 | 36755553 | 36753266 | ID=MS.gene038519.t1;Parent=MS.gene038519 |
| chr8.4 | exon | 36753266 | 36753877 | 36753266 | ID=MS.gene038519.t1.exon1;Parent=MS.gene038519.t1 |
| chr8.4 | CDS | 36753266 | 36753877 | 36753266 | ID=cds.MS.gene038519.t1;Parent=MS.gene038519.t1 |
| chr8.4 | exon | 36755024 | 36755323 | 36755024 | ID=MS.gene038519.t1.exon2;Parent=MS.gene038519.t1 |
| chr8.4 | CDS | 36755024 | 36755323 | 36755024 | ID=cds.MS.gene038519.t1;Parent=MS.gene038519.t1 |
| chr8.4 | exon | 36755503 | 36755553 | 36755503 | ID=MS.gene038519.t1.exon3;Parent=MS.gene038519.t1 |
| chr8.4 | CDS | 36755503 | 36755553 | 36755503 | ID=cds.MS.gene038519.t1;Parent=MS.gene038519.t1 |
| Gene Sequence |
| Protein sequence |