AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038519


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038519.t1 MTR_8g039620 70.181 332 84 3 2 318 6 337 9.43e-162 458
MS.gene038519.t1 MTR_8g072510 73.585 318 73 3 1 308 1 317 5.79e-161 457
MS.gene038519.t1 MTR_7g021090 71.207 323 74 3 4 317 3 315 1.22e-160 454
MS.gene038519.t1 MTR_1g059930 69.968 313 85 1 8 311 10 322 1.14e-154 440
MS.gene038519.t1 MTR_3g016210 67.372 331 88 2 1 311 1 331 4.23e-152 434
MS.gene038519.t1 MTR_8g062410 68.168 333 83 5 1 318 1 325 1.51e-147 423
MS.gene038519.t1 MTR_8g073260 62.893 318 108 2 1 308 1 318 9.08e-140 403
MS.gene038519.t1 MTR_7g451420 66.346 312 94 3 4 305 3 313 1.09e-139 398
MS.gene038519.t1 MTR_8g068990 65.049 309 82 4 8 304 10 304 3.47e-135 392
MS.gene038519.t1 MTR_8g069880 64.103 312 99 5 6 306 3 312 2.62e-125 367
MS.gene038519.t1 MTR_8g467780 57.994 319 113 4 8 306 9 326 1.40e-118 349
MS.gene038519.t1 MTR_8g040930 66.038 265 78 2 52 304 1 265 6.34e-118 345
MS.gene038519.t1 MTR_8g041240 66.038 265 78 2 52 304 1 265 6.34e-118 345
MS.gene038519.t1 MTR_8g066670 60.568 317 111 5 1 306 1067 1380 1.24e-114 362
MS.gene038519.t1 MTR_3g105650 52.258 310 133 3 7 301 2 311 6.60e-105 313
MS.gene038519.t1 MTR_8g073275 43.465 329 104 6 52 308 1 319 6.21e-73 232
MS.gene038519.t1 MTR_7g099580 27.667 300 175 7 22 316 24 286 1.78e-31 120
MS.gene038519.t1 MTR_1g069110 30.065 306 190 6 10 306 18 308 2.75e-31 122
MS.gene038519.t1 MTR_7g099570 28.700 223 145 3 10 227 9 222 3.41e-24 103
MS.gene038519.t1 MTR_2g101320 30.769 195 120 3 38 229 134 316 2.97e-21 94.7
MS.gene038519.t1 MTR_1g115575 24.104 307 189 6 45 319 169 463 5.99e-20 90.9
MS.gene038519.t1 MTR_7g117620 26.333 300 177 7 45 312 119 406 6.47e-20 90.5
MS.gene038519.t1 MTR_2g101310 29.474 190 123 3 41 229 137 316 1.09e-16 81.3
MS.gene038519.t1 MTR_2g101310 29.474 190 123 3 41 229 137 316 1.39e-16 80.5
MS.gene038519.t1 MTR_4g062100 25.385 260 162 6 5 256 69 304 5.86e-15 75.9
MS.gene038519.t1 MTR_7g100390 24.262 305 185 6 45 316 87 378 5.87e-15 75.9
MS.gene038519.t1 MTR_2g096190 23.410 346 211 9 5 313 65 393 1.35e-14 74.7
MS.gene038519.t1 MTR_2g033050 27.841 176 115 4 61 232 217 384 2.65e-12 67.4
MS.gene038519.t1 MTR_7g100430 21.260 381 222 11 5 310 67 444 3.07e-12 67.4
MS.gene038519.t1 MTR_6g027840 28.426 197 127 8 45 231 246 438 3.47e-12 67.4
MS.gene038519.t1 MTR_2g096760 25.676 222 133 8 5 210 10 215 2.66e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038519.t1 AT4G10720 41.888 339 160 4 7 318 2 330 5.42e-81 253
MS.gene038519.t1 AT4G10720 42.202 327 152 4 7 306 2 318 1.32e-80 251
MS.gene038519.t1 AT5G15500 41.390 331 167 8 7 315 2 327 2.19e-72 231
MS.gene038519.t1 AT1G14500 37.188 320 183 4 7 308 2 321 4.64e-70 224
MS.gene038519.t1 AT1G14480 39.009 323 174 5 7 308 2 322 3.48e-69 222
MS.gene038519.t1 AT5G54620 39.697 330 180 4 7 317 2 331 1.48e-68 220
MS.gene038519.t1 AT5G54610 36.741 313 164 6 7 295 2 304 8.97e-63 205
MS.gene038519.t1 AT1G14480 34.967 306 167 5 7 308 2 279 3.90e-52 177
MS.gene038519.t1 AT5G15500 37.333 225 115 8 112 315 2 221 6.86e-32 122
MS.gene038519.t1 AT5G51160 28.727 275 157 6 64 307 35 301 1.20e-29 117
MS.gene038519.t1 AT4G03500 25.574 305 161 8 44 301 217 502 3.03e-21 94.7
MS.gene038519.t1 AT4G03500 25.574 305 161 8 44 301 194 479 3.68e-21 94.4
MS.gene038519.t1 AT4G03500 25.574 305 161 8 44 301 194 479 3.68e-21 94.4
MS.gene038519.t1 AT1G34050 25.094 267 155 6 66 304 174 423 1.92e-18 86.3
MS.gene038519.t1 AT1G07710 23.768 345 216 7 5 316 65 395 3.85e-16 79.3
MS.gene038519.t1 AT1G07710 23.768 345 216 7 5 316 65 395 3.85e-16 79.3
MS.gene038519.t1 AT3G12360 22.801 307 193 6 45 319 155 449 6.73e-16 78.6
MS.gene038519.t1 AT3G12360 23.875 289 176 6 45 301 167 443 7.40e-16 78.6
MS.gene038519.t1 AT3G09550 24.924 329 192 11 10 301 147 457 2.36e-15 77.0
MS.gene038519.t1 AT3G09550 24.924 329 192 11 10 301 147 457 2.36e-15 77.0
MS.gene038519.t1 AT5G54700 29.808 208 115 7 102 304 23 204 2.46e-15 76.3
MS.gene038519.t1 AT3G09550 24.924 329 192 11 10 301 154 464 3.07e-15 76.6
MS.gene038519.t1 AT2G01680 26.238 202 135 3 45 244 97 286 4.92e-15 75.9
MS.gene038519.t1 AT4G03460 26.087 276 142 8 76 306 232 490 1.05e-14 75.1
MS.gene038519.t1 AT4G03460 26.087 276 142 8 76 306 200 458 1.14e-14 75.1
MS.gene038519.t1 AT2G31820 24.653 288 172 8 45 300 227 501 1.70e-14 74.7
MS.gene038519.t1 AT4G03480 24.675 308 169 9 10 302 360 619 4.32e-14 73.2
MS.gene038519.t1 AT4G03480 24.675 308 169 9 10 302 357 616 5.27e-14 73.2
MS.gene038519.t1 AT5G60070 21.856 334 204 9 7 300 74 390 5.43e-14 72.8
MS.gene038519.t1 AT4G03450 23.899 318 158 8 10 302 227 485 1.06e-13 72.0
MS.gene038519.t1 AT4G03490 24.917 301 173 9 10 301 201 457 1.28e-13 72.0
MS.gene038519.t1 AT4G03490 24.917 301 173 9 10 301 211 467 1.35e-13 72.0
MS.gene038519.t1 AT4G03450 23.899 318 158 8 10 302 227 485 1.51e-13 71.6
MS.gene038519.t1 AT4G03490 24.917 301 173 9 10 301 211 467 1.51e-13 71.6
MS.gene038519.t1 AT1G03670 29.545 220 110 6 102 301 279 473 1.68e-13 71.6
MS.gene038519.t1 AT1G05640 25.141 354 203 10 7 300 114 465 1.79e-13 71.6
MS.gene038519.t1 AT1G10340 23.510 302 148 5 44 304 169 428 7.03e-13 69.7
MS.gene038519.t1 AT1G10340 23.510 302 148 5 44 304 173 432 7.32e-13 69.7
MS.gene038519.t1 AT5G02620 21.264 348 225 6 5 316 55 389 1.15e-12 68.9
MS.gene038519.t1 AT5G02620 21.264 348 225 6 5 316 55 389 1.15e-12 68.9
MS.gene038519.t1 AT5G02620 21.264 348 225 6 5 316 55 389 1.15e-12 68.9
MS.gene038519.t1 AT5G50140 25.854 205 126 5 41 229 26 220 3.09e-12 67.4
MS.gene038519.t1 AT4G05040 25.287 261 180 4 46 302 277 526 2.42e-11 65.1
MS.gene038519.t1 AT4G05040 25.287 261 180 4 46 302 277 526 2.42e-11 65.1
MS.gene038519.t1 AT4G05040 25.287 261 180 4 46 302 277 526 2.42e-11 65.1
MS.gene038519.t1 AT4G05040 25.287 261 180 4 46 302 277 526 2.42e-11 65.1
MS.gene038519.t1 AT4G05040 25.287 261 180 4 46 302 277 526 2.42e-11 65.1
MS.gene038519.t1 AT4G05040 25.287 261 180 4 46 302 277 526 2.42e-11 65.1
MS.gene038519.t1 AT4G05040 25.287 261 180 4 46 302 277 526 2.42e-11 65.1

Find 64 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGACCTTGTTAGAGTTAA+AGG 0.117136 8.4:+36753563 MS.gene038519:CDS
GCCAGCTAACAAGTACTTTA+AGG 0.142664 8.4:-36753742 None:intergenic
TCAAGATGATCCATCCATTT+TGG 0.183666 8.4:+36753343 MS.gene038519:CDS
GTAATATGTCAACTTATTTA+AGG 0.200563 8.4:+36755190 MS.gene038519:CDS
TTTACATATTGCTGCATCTA+TGG 0.203638 8.4:+36753400 MS.gene038519:CDS
CTTCATTATGCAAGTCAAAT+TGG 0.280737 8.4:+36753605 MS.gene038519:CDS
TGACATATTACCTCTAATTC+TGG 0.294950 8.4:-36755178 None:intergenic
TATGATACCAAGGGGAATAA+TGG 0.296385 8.4:+36755491 MS.gene038519:intron
GGCGCTCAAAAGCTGGAAAA+TGG 0.305181 8.4:+36753785 MS.gene038519:CDS
GGATGGGGCTGGATCCTTGC+GGG 0.330635 8.4:-36753484 None:intergenic
TAAATCTATACGCTCCAAAA+TGG 0.335742 8.4:-36753357 None:intergenic
CAGCGCAGTCTCACCTCTTA+TGG 0.353195 8.4:-36753687 None:intergenic
ATGATACCAAGGGGAATAAT+GGG 0.355754 8.4:+36755492 MS.gene038519:intron
TTCATAATTTCGGTGGCAAA+TGG 0.365858 8.4:-36753431 None:intergenic
TTACCTGCAGCTCACTCCTT+AGG 0.369288 8.4:-36753859 None:intergenic
TCATCAAAGACCAGAATTAG+AGG 0.384461 8.4:+36755168 MS.gene038519:CDS
TAGGGCTGAAATATGCAAAA+TGG 0.395625 8.4:-36753840 None:intergenic
ATTGAATACTTGACCATAAG+AGG 0.401389 8.4:+36753674 MS.gene038519:CDS
ATTTCTAGTGGCTTCTCCAA+TGG 0.409439 8.4:+36755515 MS.gene038519:CDS
TTTCTAGTGGCTTCTCCAAT+GGG 0.416509 8.4:+36755516 MS.gene038519:CDS
CAATCGGTTATCATTATTTG+TGG 0.423782 8.4:-36753273 None:intergenic
CCCTTAAAGTACTTGTTAGC+TGG 0.441660 8.4:+36753741 MS.gene038519:CDS
CCAGCTAACAAGTACTTTAA+GGG 0.442710 8.4:-36753741 None:intergenic
GTCAAGTATTCAATAGATTC+CGG 0.443534 8.4:-36753665 None:intergenic
TACCTGCAGCTCACTCCTTA+GGG 0.445883 8.4:-36753858 None:intergenic
TGTAAAGGAGTTTCAACAAA+TGG 0.448723 8.4:-36753383 None:intergenic
ACGGCGAGGCGCTCAAAAGC+TGG 0.450141 8.4:+36753778 MS.gene038519:CDS
CTTGAGCTGCAGCTTTCAAT+CGG 0.454866 8.4:-36753289 None:intergenic
TCTAATATACTCTTGATCTC+TGG 0.462110 8.4:-36755108 None:intergenic
AAATTTGAACTCAATGAACT+TGG 0.463199 8.4:+36755053 MS.gene038519:CDS
AGCCCTAAGGAGTGAGCTGC+AGG 0.472202 8.4:+36753856 MS.gene038519:CDS
TCATAATTTCGGTGGCAAAT+GGG 0.485094 8.4:-36753430 None:intergenic
TTTAGCTTCCATGCAAATGA+AGG 0.490376 8.4:-36753461 None:intergenic
ATTTAAAACCTTCATTTGCA+TGG 0.492498 8.4:+36753453 MS.gene038519:CDS
TGTACAGGCACTTCAATTGT+TGG 0.493166 8.4:+36755017 MS.gene038519:intron
TTACATATTGCTGCATCTAT+GGG 0.495030 8.4:+36753401 MS.gene038519:CDS
TAGTGGCTTCTCCAATGGGA+TGG 0.498340 8.4:+36755520 MS.gene038519:CDS
AATCGGTTATCATTATTTGT+GGG 0.501672 8.4:-36753272 None:intergenic
GCAACTGCGATCTATCAATC+AGG 0.505224 8.4:+36755273 MS.gene038519:CDS
CTCTTCCTTTAACTCTAACA+AGG 0.513638 8.4:-36753568 None:intergenic
TGTTAAGTACGAACAATATG+AGG 0.526462 8.4:+36753718 MS.gene038519:CDS
TCTATACGCTCCAAAATGGA+TGG 0.544845 8.4:-36753353 None:intergenic
TTGAAAGCTGCAGCTCAAGC+AGG 0.545828 8.4:+36753293 MS.gene038519:CDS
CATAGCGAGATGGATGGGGC+TGG 0.551606 8.4:-36753495 None:intergenic
TTTGCATAGCGAGATGGATG+GGG 0.552573 8.4:-36753499 None:intergenic
GGGAATAATGGGATTTCTAG+TGG 0.553942 8.4:+36755503 MS.gene038519:CDS
ATAGATGCAGCAATATGTAA+AGG 0.555251 8.4:-36753398 None:intergenic
TTAAACAAGAGGGACGATGC+AGG 0.562233 8.4:+36753812 MS.gene038519:CDS
ATTTGACTTGCATAATGAAG+AGG 0.563135 8.4:-36753602 None:intergenic
CAGAGGAGAAACGTAACACT+TGG 0.573843 8.4:+36755229 MS.gene038519:CDS
TGGATGGGGCTGGATCCTTG+CGG 0.586497 8.4:-36753485 None:intergenic
CTAACCTGATAAATTCCACC+AGG 0.595881 8.4:-36755306 None:intergenic
AAATGGAATATTAAACAAGA+GGG 0.596917 8.4:+36753802 MS.gene038519:CDS
CTAGCGGTAAACCATCCCAT+TGG 0.611170 8.4:-36755531 None:intergenic
CTTGAGCTTATGTGCAAGTG+TGG 0.611285 8.4:-36755145 None:intergenic
AAAATGGAATATTAAACAAG+AGG 0.615959 8.4:+36753801 MS.gene038519:CDS
TTATGCAAGTCAAATTGGTG+AGG 0.618646 8.4:+36753610 MS.gene038519:CDS
CATCTTGAATCACTGTGTAG+AGG 0.625838 8.4:-36753328 None:intergenic
GCATGGAAGCTAAACCCGCA+AGG 0.660983 8.4:+36753470 MS.gene038519:CDS
TTGAGCTTATGTGCAAGTGT+GGG 0.673038 8.4:-36755144 None:intergenic
GATTAGAGCAAATATGACAG+AGG 0.683809 8.4:+36755212 MS.gene038519:CDS
AACCTGATAAATTCCACCAG+GGG 0.693447 8.4:-36755304 None:intergenic
TAACCTGATAAATTCCACCA+GGG 0.695982 8.4:-36755305 None:intergenic
ACCTGATAAATTCCACCAGG+GGG 0.706697 8.4:-36755303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTATGTTACATATTT+TGG - chr8.4:36754890-36754909 None:intergenic 10.0%
!! AACAAAATCAACAAATTAAA+AGG + chr8.4:36754538-36754557 MS.gene038519:intron 15.0%
!! AGAAAAAATGAAATATACAA+AGG - chr8.4:36753914-36753933 None:intergenic 15.0%
!! ATTAAAAGGAAATATAGAAT+CGG + chr8.4:36754552-36754571 MS.gene038519:intron 15.0%
!!! AGGTTTTAAATTCATAATTT+CGG - chr8.4:36753444-36753463 None:intergenic 15.0%
!!! ATAAACATGGTTTTTATTTT+TGG - chr8.4:36754113-36754132 None:intergenic 15.0%
!!! TTGAAATAATCTTATTTGAT+TGG - chr8.4:36754493-36754512 None:intergenic 15.0%
!! AAAAAGAAATAGAAGATGAA+GGG + chr8.4:36754327-36754346 MS.gene038519:intron 20.0%
!! AAAATGGAATATTAAACAAG+AGG + chr8.4:36753801-36753820 MS.gene038519:CDS 20.0%
!! AAAATTCAAATGTTGTAAAG+AGG + chr8.4:36754511-36754530 MS.gene038519:intron 20.0%
!! AAATGGAATATTAAACAAGA+GGG + chr8.4:36753802-36753821 MS.gene038519:CDS 20.0%
!! ATTTCAGTAAATGTCATATT+TGG - chr8.4:36754056-36754075 None:intergenic 20.0%
!! CTAGTATTTGATTATGATTA+GGG - chr8.4:36754782-36754801 None:intergenic 20.0%
!! GTAATATGTCAACTTATTTA+AGG + chr8.4:36755190-36755209 MS.gene038519:CDS 20.0%
!! TAAAAAGAAATAGAAGATGA+AGG + chr8.4:36754326-36754345 MS.gene038519:intron 20.0%
!! TAGTATTTGATTATGATTAG+GGG - chr8.4:36754781-36754800 None:intergenic 20.0%
!! TGTAAATATGTATTCCTTTA+CGG + chr8.4:36755446-36755465 MS.gene038519:intron 20.0%
!! TTAAATGAAGTTACTACTAA+GGG - chr8.4:36754712-36754731 None:intergenic 20.0%
!!! ATATATTTTATGATACCAAG+GGG + chr8.4:36755483-36755502 MS.gene038519:intron 20.0%
!!! GATATATTTTATGATACCAA+GGG + chr8.4:36755482-36755501 MS.gene038519:intron 20.0%
!!! TGTGATTTTAGTTATTGAAT+AGG - chr8.4:36753886-36753905 None:intergenic 20.0%
!!! TTTTAAATTCATAATTTCGG+TGG - chr8.4:36753441-36753460 None:intergenic 20.0%
! AAAAGAAATAGAAGATGAAG+GGG + chr8.4:36754328-36754347 MS.gene038519:intron 25.0%
! AAATTTGAACTCAATGAACT+TGG + chr8.4:36755053-36755072 MS.gene038519:CDS 25.0%
! AATCGGTTATCATTATTTGT+GGG - chr8.4:36753275-36753294 None:intergenic 25.0%
! AATCTCAAAATGACATATCT+CGG + chr8.4:36754153-36754172 MS.gene038519:intron 25.0%
! AGAAGAAATAGTAGAATTTG+AGG - chr8.4:36755367-36755386 None:intergenic 25.0%
! AGTATTTGATTATGATTAGG+GGG - chr8.4:36754780-36754799 None:intergenic 25.0%
! ATAGAATCGGTATAATTAGA+AGG + chr8.4:36754565-36754584 MS.gene038519:intron 25.0%
! ATATCCGTAAATTAGATAAG+TGG + chr8.4:36754935-36754954 MS.gene038519:intron 25.0%
! ATGACACAAGTTTATAAACA+TGG - chr8.4:36754126-36754145 None:intergenic 25.0%
! CCTAATCATAATCAAATACT+AGG + chr8.4:36754780-36754799 MS.gene038519:intron 25.0%
! CCTAGTATTTGATTATGATT+AGG - chr8.4:36754783-36754802 None:intergenic 25.0%
! CTAACCACTTATCTAATTTA+CGG - chr8.4:36754942-36754961 None:intergenic 25.0%
! GTTAAATGAAGTTACTACTA+AGG - chr8.4:36754713-36754732 None:intergenic 25.0%
! TGTATTGTTCATTAACTACT+TGG + chr8.4:36754989-36755008 MS.gene038519:intron 25.0%
!! ATTTAAAACCTTCATTTGCA+TGG + chr8.4:36753453-36753472 MS.gene038519:CDS 25.0%
!! CGATATATTTTATGATACCA+AGG + chr8.4:36755481-36755500 MS.gene038519:intron 25.0%
!! GACATTTACTGAAATTTTGA+CGG + chr8.4:36754061-36754080 MS.gene038519:intron 25.0%
!!! GAAATGTGTTTTAAAAACCA+TGG - chr8.4:36754831-36754850 None:intergenic 25.0%
AAAGACCTTGTTAGAGTTAA+AGG + chr8.4:36753563-36753582 MS.gene038519:CDS 30.0%
AACAGATAGTTCATTTCCAT+AGG + chr8.4:36754730-36754749 MS.gene038519:intron 30.0%
ACAGATAGTTCATTTCCATA+GGG + chr8.4:36754731-36754750 MS.gene038519:intron 30.0%
ATAGATGCAGCAATATGTAA+AGG - chr8.4:36753401-36753420 None:intergenic 30.0%
ATTGAATACTTGACCATAAG+AGG + chr8.4:36753674-36753693 MS.gene038519:CDS 30.0%
CAATCGGTTATCATTATTTG+TGG - chr8.4:36753276-36753295 None:intergenic 30.0%
CTTCATTATGCAAGTCAAAT+TGG + chr8.4:36753605-36753624 MS.gene038519:CDS 30.0%
GCAAAAAAACCAAAAACGTA+TGG + chr8.4:36753517-36753536 MS.gene038519:CDS 30.0%
GTCAAGTATTCAATAGATTC+CGG - chr8.4:36753668-36753687 None:intergenic 30.0%
TAAATCTATACGCTCCAAAA+TGG - chr8.4:36753360-36753379 None:intergenic 30.0%
TCTAATATACTCTTGATCTC+TGG - chr8.4:36755111-36755130 None:intergenic 30.0%
TGACATATTACCTCTAATTC+TGG - chr8.4:36755181-36755200 None:intergenic 30.0%
TGCAAATTTGCGAATTATCA+TGG - chr8.4:36754462-36754481 None:intergenic 30.0%
TGTAAAGGAGTTTCAACAAA+TGG - chr8.4:36753386-36753405 None:intergenic 30.0%
TGTTAAGTACGAACAATATG+AGG + chr8.4:36753718-36753737 MS.gene038519:CDS 30.0%
TTACATATTGCTGCATCTAT+GGG + chr8.4:36753401-36753420 MS.gene038519:CDS 30.0%
TTTACATATTGCTGCATCTA+TGG + chr8.4:36753400-36753419 MS.gene038519:CDS 30.0%
! GCTGGCTCAAAAAAAATAAA+CGG + chr8.4:36753759-36753778 MS.gene038519:CDS 30.0%
! GTTTTCCTGTGTGTATAAAT+TGG - chr8.4:36754240-36754259 None:intergenic 30.0%
! TAAATTTCTCTTTTCGTGTC+CGG + chr8.4:36753646-36753665 MS.gene038519:CDS 30.0%
!! ATTTGACTTGCATAATGAAG+AGG - chr8.4:36753605-36753624 None:intergenic 30.0%
AATGAAGTTACTACTAAGGG+AGG - chr8.4:36754709-36754728 None:intergenic 35.0%
ACCATCCAATTTATACACAC+AGG + chr8.4:36754232-36754251 MS.gene038519:intron 35.0%
ATGATACCAAGGGGAATAAT+GGG + chr8.4:36755492-36755511 MS.gene038519:intron 35.0%
CAGATAGTTCATTTCCATAG+GGG + chr8.4:36754732-36754751 MS.gene038519:intron 35.0%
CCAGCTAACAAGTACTTTAA+GGG - chr8.4:36753744-36753763 None:intergenic 35.0%
CTCAAAAAAAATAAACGGCG+AGG + chr8.4:36753764-36753783 MS.gene038519:CDS 35.0%
CTCTTCCTTTAACTCTAACA+AGG - chr8.4:36753571-36753590 None:intergenic 35.0%
CTTCTACTCCAAGAAATGTT+GGG + chr8.4:36755382-36755401 MS.gene038519:intron 35.0%
GATTAGAGCAAATATGACAG+AGG + chr8.4:36755212-36755231 MS.gene038519:CDS 35.0%
TAACCTGATAAATTCCACCA+GGG - chr8.4:36755308-36755327 None:intergenic 35.0%
TAGGGCTGAAATATGCAAAA+TGG - chr8.4:36753843-36753862 None:intergenic 35.0%
TATCATGGTACACTTGATTG+AGG - chr8.4:36754447-36754466 None:intergenic 35.0%
TATGATACCAAGGGGAATAA+TGG + chr8.4:36755491-36755510 MS.gene038519:intron 35.0%
TCATAATTTCGGTGGCAAAT+GGG - chr8.4:36753433-36753452 None:intergenic 35.0%
TCATCAAAGACCAGAATTAG+AGG + chr8.4:36755168-36755187 MS.gene038519:CDS 35.0%
TCCAAGAAATGTTGGGAAAT+CGG + chr8.4:36755389-36755408 MS.gene038519:intron 35.0%
TCCTGTGTGTATAAATTGGA+TGG - chr8.4:36754236-36754255 None:intergenic 35.0%
TCTTCTACTCCAAGAAATGT+TGG + chr8.4:36755381-36755400 MS.gene038519:intron 35.0%
TTATGCAAGTCAAATTGGTG+AGG + chr8.4:36753610-36753629 MS.gene038519:CDS 35.0%
TTCATAATTTCGGTGGCAAA+TGG - chr8.4:36753434-36753453 None:intergenic 35.0%
! AACAAGTTGAAGCTAGATCT+TGG - chr8.4:36754661-36754680 None:intergenic 35.0%
! AGATCTATGAGTCACTCTTT+TGG - chr8.4:36754265-36754284 None:intergenic 35.0%
! TCAAGATGATCCATCCATTT+TGG + chr8.4:36753343-36753362 MS.gene038519:CDS 35.0%
! TCGGTCACGATTTGAATTTT+GGG - chr8.4:36753946-36753965 None:intergenic 35.0%
! TTTAGCTTCCATGCAAATGA+AGG - chr8.4:36753464-36753483 None:intergenic 35.0%
! TTTTGCATATTTCAGCCCTA+AGG + chr8.4:36753843-36753862 MS.gene038519:CDS 35.0%
!! AGTTTTGTCAATATGCTTGC+CGG - chr8.4:36753992-36754011 None:intergenic 35.0%
AACCTGATAAATTCCACCAG+GGG - chr8.4:36755307-36755326 None:intergenic 40.0%
AGAAATCCCATTATTCCCCT+TGG - chr8.4:36755501-36755520 None:intergenic 40.0%
ATCAAATACTAGGTGCATCG+TGG + chr8.4:36754790-36754809 MS.gene038519:intron 40.0%
CATCTTGAATCACTGTGTAG+AGG - chr8.4:36753331-36753350 None:intergenic 40.0%
CGAACTAAAACATCCTAGTC+CGG + chr8.4:36753970-36753989 MS.gene038519:intron 40.0%
CGCTATAACTGATACCGTAA+AGG - chr8.4:36755463-36755482 None:intergenic 40.0%
CTAACCTGATAAATTCCACC+AGG - chr8.4:36755309-36755328 None:intergenic 40.0%
CTTGGAGAGAAAAACAGCAT+TGG + chr8.4:36755071-36755090 MS.gene038519:CDS 40.0%
GCCAGCTAACAAGTACTTTA+AGG - chr8.4:36753745-36753764 None:intergenic 40.0%
GGAATTTATCAGGTTAGTGC+TGG + chr8.4:36755312-36755331 MS.gene038519:intron 40.0%
GGTCGTCGTTATTATAACCA+TGG + chr8.4:36754811-36754830 MS.gene038519:intron 40.0%
TCTATACGCTCCAAAATGGA+TGG - chr8.4:36753356-36753375 None:intergenic 40.0%
TGTACAGGCACTTCAATTGT+TGG + chr8.4:36755017-36755036 MS.gene038519:intron 40.0%
TTGAGCTTATGTGCAAGTGT+GGG - chr8.4:36755147-36755166 None:intergenic 40.0%
TTGTGTGTTTCCCTTCTAGT+GGG - chr8.4:36754392-36754411 None:intergenic 40.0%
! AACTACTTGGTAGCATGTAC+AGG + chr8.4:36755002-36755021 MS.gene038519:intron 40.0%
! ACCGATTTCCCAACATTTCT+TGG - chr8.4:36755393-36755412 None:intergenic 40.0%
! AGCGATACACCATACGTTTT+TGG - chr8.4:36753529-36753548 None:intergenic 40.0%
! CCCTTAAAGTACTTGTTAGC+TGG + chr8.4:36753741-36753760 MS.gene038519:CDS 40.0%
! GGGAATAATGGGATTTCTAG+TGG + chr8.4:36755503-36755522 MS.gene038519:CDS 40.0%
! GTCGGTCACGATTTGAATTT+TGG - chr8.4:36753947-36753966 None:intergenic 40.0%
! TTTCTAGTGGCTTCTCCAAT+GGG + chr8.4:36755516-36755535 MS.gene038519:CDS 40.0%
! TTTTGCATAGCGAGATGGAT+GGG - chr8.4:36753503-36753522 None:intergenic 40.0%
! TTTTTGCATAGCGAGATGGA+TGG - chr8.4:36753504-36753523 None:intergenic 40.0%
!! AGTGCTGGTGATGACAATAA+TGG + chr8.4:36755327-36755346 MS.gene038519:intron 40.0%
!! ATTTCTAGTGGCTTCTCCAA+TGG + chr8.4:36755515-36755534 MS.gene038519:CDS 40.0%
!! TAAGTCACAAAGACTTGGTG+AGG + chr8.4:36754351-36754370 MS.gene038519:intron 40.0%
!!! GGTTTTTTTGCATAGCGAGA+TGG - chr8.4:36753508-36753527 None:intergenic 40.0%
AACAACCATCACCCACTAGA+AGG + chr8.4:36754378-36754397 MS.gene038519:intron 45.0%
ACAACCATCACCCACTAGAA+GGG + chr8.4:36754379-36754398 MS.gene038519:intron 45.0%
ACCTGATAAATTCCACCAGG+GGG - chr8.4:36755306-36755325 None:intergenic 45.0%
AGGGGTAAGTCACAAAGACT+TGG + chr8.4:36754346-36754365 MS.gene038519:intron 45.0%
ATAGGGGTGACTCCATCTAA+CGG + chr8.4:36754748-36754767 MS.gene038519:intron 45.0%
CACTAGAAGGGAAACACACA+AGG + chr8.4:36754391-36754410 MS.gene038519:intron 45.0%
CAGAGGAGAAACGTAACACT+TGG + chr8.4:36755229-36755248 MS.gene038519:CDS 45.0%
CTTGAGCTGCAGCTTTCAAT+CGG - chr8.4:36753292-36753311 None:intergenic 45.0%
CTTGAGCTTATGTGCAAGTG+TGG - chr8.4:36755148-36755167 None:intergenic 45.0%
CTTGTGTGTTTCCCTTCTAG+TGG - chr8.4:36754393-36754412 None:intergenic 45.0%
GCAACTGCGATCTATCAATC+AGG + chr8.4:36755273-36755292 MS.gene038519:CDS 45.0%
TACTAAGGGAGGTCACTCTT+TGG - chr8.4:36754698-36754717 None:intergenic 45.0%
TTAAACAAGAGGGACGATGC+AGG + chr8.4:36753812-36753831 MS.gene038519:CDS 45.0%
TTTGCATAGCGAGATGGATG+GGG - chr8.4:36753502-36753521 None:intergenic 45.0%
!!! GGATGTTTTAGTTCGTGCGT+CGG - chr8.4:36753965-36753984 None:intergenic 45.0%
CTAGCGGTAAACCATCCCAT+TGG - chr8.4:36755534-36755553 None:intergenic 50.0%
GGCGCTCAAAAGCTGGAAAA+TGG + chr8.4:36753785-36753804 MS.gene038519:CDS 50.0%
GTCAATATGCTTGCCGGACT+AGG - chr8.4:36753986-36754005 None:intergenic 50.0%
GTTAGATGGAGTCACCCCTA+TGG - chr8.4:36754749-36754768 None:intergenic 50.0%
TAAGGGAGGTCACTCTTTGG+AGG - chr8.4:36754695-36754714 None:intergenic 50.0%
TACCTGCAGCTCACTCCTTA+GGG - chr8.4:36753861-36753880 None:intergenic 50.0%
TAGGGGTGACTCCATCTAAC+GGG + chr8.4:36754749-36754768 MS.gene038519:intron 50.0%
TAGTGGCTTCTCCAATGGGA+TGG + chr8.4:36755520-36755539 MS.gene038519:CDS 50.0%
TCCCCCTGGTGGAATTTATC+AGG + chr8.4:36755302-36755321 MS.gene038519:CDS 50.0%
TTACCTGCAGCTCACTCCTT+AGG - chr8.4:36753862-36753881 None:intergenic 50.0%
TTGAAAGCTGCAGCTCAAGC+AGG + chr8.4:36753293-36753312 MS.gene038519:CDS 50.0%
! GTTGGGAAATCGGTCTTGTC+AGG + chr8.4:36755399-36755418 MS.gene038519:intron 50.0%
! GTTTCCCTTCTAGTGGGTGA+TGG - chr8.4:36754386-36754405 None:intergenic 50.0%
AGGGGGAGTTACCCGTTAGA+TGG - chr8.4:36754763-36754782 None:intergenic 55.0%
CAATCAGGATTGAGTCCCCC+TGG + chr8.4:36755288-36755307 MS.gene038519:CDS 55.0%
CAGCGCAGTCTCACCTCTTA+TGG - chr8.4:36753690-36753709 None:intergenic 55.0%
GCATGGAAGCTAAACCCGCA+AGG + chr8.4:36753470-36753489 MS.gene038519:CDS 55.0%
AGCCCTAAGGAGTGAGCTGC+AGG + chr8.4:36753856-36753875 MS.gene038519:CDS 60.0%
CATAGCGAGATGGATGGGGC+TGG - chr8.4:36753498-36753517 None:intergenic 60.0%
TCAGGATTGAGTCCCCCTGG+TGG + chr8.4:36755291-36755310 MS.gene038519:CDS 60.0%
TGGATGGGGCTGGATCCTTG+CGG - chr8.4:36753488-36753507 None:intergenic 60.0%
GGATGGGGCTGGATCCTTGC+GGG - chr8.4:36753487-36753506 None:intergenic 65.0%
! ACGGCGAGGCGCTCAAAAGC+TGG + chr8.4:36753778-36753797 MS.gene038519:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 36753266 36755553 36753266 ID=MS.gene038519
chr8.4 mRNA 36753266 36755553 36753266 ID=MS.gene038519.t1;Parent=MS.gene038519
chr8.4 exon 36753266 36753877 36753266 ID=MS.gene038519.t1.exon1;Parent=MS.gene038519.t1
chr8.4 CDS 36753266 36753877 36753266 ID=cds.MS.gene038519.t1;Parent=MS.gene038519.t1
chr8.4 exon 36755024 36755323 36755024 ID=MS.gene038519.t1.exon2;Parent=MS.gene038519.t1
chr8.4 CDS 36755024 36755323 36755024 ID=cds.MS.gene038519.t1;Parent=MS.gene038519.t1
chr8.4 exon 36755503 36755553 36755503 ID=MS.gene038519.t1.exon3;Parent=MS.gene038519.t1
chr8.4 CDS 36755503 36755553 36755503 ID=cds.MS.gene038519.t1;Parent=MS.gene038519.t1
Gene Sequence

>MS.gene038519

ATGAATCCCACAAATAATGATAACCGATTGAAAGCTGCAGCTCAAGCAGGTGATATAGATCTCCTCTACACAGTGATTCAAGATGATCCATCCATTTTGGAGCGTATAGATTTAATACCATTTGTTGAAACTCCTTTACATATTGCTGCATCTATGGGTCATCTCCCATTTGCCACCGAAATTATGAATTTAAAACCTTCATTTGCATGGAAGCTAAACCCGCAAGGATCCAGCCCCATCCATCTCGCTATGCAAAAAAACCAAAAACGTATGGTGTATCGCTTTGTGAACATCAATAAAGACCTTGTTAGAGTTAAAGGAAGAGAATGCTTTACTCCTCTTCATTATGCAAGTCAAATTGGTGAGGTTGATCTTTTAACTAAATTTCTCTTTTCGTGTCCGGAATCTATTGAATACTTGACCATAAGAGGTGAGACTGCGCTGCATATTGCTGTTAAGTACGAACAATATGAGGCCCTTAAAGTACTTGTTAGCTGGCTCAAAAAAAATAAACGGCGAGGCGCTCAAAAGCTGGAAAATGGAATATTAAACAAGAGGGACGATGCAGGCAACACCATTTTGCATATTTCAGCCCTAAGGAGTGAGCTGCAGGTAATCCTATTCAATAACTAAAATCACATGTCTCCTTTGTATATTTCATTTTTTCTCTATCATGACCCAAAATTCAAATCGTGACCGACGCACGAACTAAAACATCCTAGTCCGGCAAGCATATTGACAAAACTTGACAACTATCATTAATCAATTTTGAACTTGATTTTCACTTCCAAATATGACATTTACTGAAATTTTGACGGAGTATCTTTTGTATTTTTAACATTTTCCAAAAATAAAAACCATGTTTATAAACTTGTGTCATCTGACAGAATCTCAAAATGACATATCTCGGTGTTTGTACAACTCAAAATAAAACATGACTAGACTATCAATAGTTGCAGATACACAACCATCCAATTTATACACACAGGAAAACTACCAAAAGAGTGACTCATAGATCTTTAACTCTAATAGAAGTTTTCTACGCAGTTGACTTTGAATCTAAAAAGAAATAGAAGATGAAGGGGTAAGTCACAAAGACTTGGTGAGGAGACAACAACCATCACCCACTAGAAGGGAAACACACAAGGACACGAATAGTTATATTTTTCAAATCTAATCCTCAATCAAGTGTACCATGATAATTCGCAAATTTGCACACTTTATCCAATCAAATAAGATTATTTCAAAATTCAAATGTTGTAAAGAGGTGAAAACAAAATCAACAAATTAAAAGGAAATATAGAATCGGTATAATTAGAAGGATTCAAAATAATGAACTTCAACGAAAATATATAAATCTAACTTTAGTGAAAATGAAATACAATGATAAAACCAAGATCTAGCTTCAACTTGTTGATATCTCTTTCCTCCAAAGAGTGACCTCCCTTAGTAGTAACTTCATTTAACAGATAGTTCATTTCCATAGGGGTGACTCCATCTAACGGGTAACTCCCCCTAATCATAATCAAATACTAGGTGCATCGTGGTCGTCGTTATTATAACCATGGTTTTTAAAACACATTTCTCAAAACACATCTTACACAACATATCGAAACATATGCCAAAATATGTAACATAAAAAATGATTTGAAAGTCTACTACTTTATAAATATCCGTAAATTAGATAAGTGGTTAGTTGCTAACGTGAATGTTCTCTAACAAATGTATTGTTCATTAACTACTTGGTAGCATGTACAGGCACTTCAATTGTTGGTAGAGACTAATATAAATTTGAACTCAATGAACTTGGAGAGAAAAACAGCATTGGACATAGCAAGCACTCCAGAGATCAAGAGTATATTAGAAGTCACTGATGCTCCCACACTTGCACATAAGCTCAAGTCATCAAAGACCAGAATTAGAGGTAATATGTCAACTTATTTAAGGATTAGAGCAAATATGACAGAGGAGAAACGTAACACTTGGTTGATAGTTGCGACTCTTGTTGCAACTGCGATCTATCAATCAGGATTGAGTCCCCCTGGTGGAATTTATCAGGTTAGTGCTGGTGATGACAATAATGGTGTGAACATTATTTCCTCAAATTCTACTATTTCTTCTACTCCAAGAAATGTTGGGAAATCGGTCTTGTCAGGATATGAATTCTCTTTGTTTTTATTTGTAAATATGTATTCCTTTACGGTATCAGTTATAGCGATATATTTTATGATACCAAGGGGAATAATGGGATTTCTAGTGGCTTCTCCAATGGGATGGTTTACCGCTAG

Protein sequence

>MS.gene038519.t1

MNPTNNDNRLKAAAQAGDIDLLYTVIQDDPSILERIDLIPFVETPLHIAASMGHLPFATEIMNLKPSFAWKLNPQGSSPIHLAMQKNQKRMVYRFVNINKDLVRVKGRECFTPLHYASQIGEVDLLTKFLFSCPESIEYLTIRGETALHIAVKYEQYEALKVLVSWLKKNKRRGAQKLENGILNKRDDAGNTILHISALRSELQALQLLVETNINLNSMNLERKTALDIASTPEIKSILEVTDAPTLAHKLKSSKTRIRGNMSTYLRIRANMTEEKRNTWLIVATLVATAIYQSGLSPPGGIYQGNNGISSGFSNGMVYR