AlfalfaGEDB | MS.gene066464

M. sativa cultivar XinJiangDaYe / MS.gene066464

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13637.9 PF13962.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066464.t1	XP_003629044.1	88.4	345	38	1	1	345	1	343	6.70E-104	387.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066464.t1	Q8GYH5	48.5	303	147	3	11	306	4	304	1.1e-14	82.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066464.t1	G7L7W8	88.4	345	38	1	1	345	1	343	4.8e-104	387.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene066464	MS.gene22482	PPI
MS.gene066464	MS.gene050270	PPI
MS.gene066464	MS.gene60920	PPI
MS.gene30172	MS.gene066464	PPI
MS.gene066464	MS.gene058128	PPI
MS.gene23852	MS.gene066464	PPI
MS.gene97943	MS.gene066464	PPI
MS.gene066464	MS.gene34009	PPI
MS.gene066464	MS.gene018518	PPI
MS.gene066464	MS.gene043662	PPI
MS.gene066464	MS.gene065848	PPI
MS.gene066464	MS.gene004844	PPI
MS.gene027071	MS.gene066464	PPI
MS.gene066464	MS.gene068249	PPI
MS.gene67157	MS.gene066464	PPI
MS.gene066464	MS.gene99588	PPI
MS.gene066464	MS.gene54764	PPI
MS.gene066464	MS.gene038519	PPI
MS.gene066464	MS.gene27223	PPI
MS.gene066464	MS.gene042783	PPI
MS.gene010910	MS.gene066464	PPI
MS.gene066464	MS.gene25024	PPI
MS.gene066464	MS.gene012203	PPI
MS.gene066464	MS.gene26019	PPI
MS.gene066464	MS.gene97943	PPI
MS.gene063222	MS.gene066464	PPI
MS.gene07706	MS.gene066464	PPI
MS.gene027074	MS.gene066464	PPI
MS.gene066464	MS.gene050272	PPI
MS.gene066464	MS.gene63085	PPI
MS.gene69687	MS.gene066464	PPI
MS.gene066464	MS.gene050456	PPI
MS.gene066464	MS.gene30176	PPI
MS.gene066464	MS.gene51258	PPI
MS.gene066464	MS.gene32723	PPI
MS.gene066464	MS.gene053363	PPI
MS.gene23810	MS.gene066464	PPI
MS.gene066464	MS.gene066467	PPI
MS.gene066464	MS.gene024753	PPI
MS.gene78281	MS.gene066464	PPI
MS.gene066464	MS.gene32726	PPI
MS.gene066464	MS.gene71122	PPI
MS.gene005995	MS.gene066464	PPI
MS.gene037950	MS.gene066464	PPI
MS.gene066464	MS.gene24922	PPI
MS.gene066464	MS.gene052956	PPI
MS.gene066464	MS.gene73119	PPI
MS.gene066464	MS.gene92243	PPI
MS.gene066464	MS.gene85534	PPI
MS.gene066464	MS.gene037950	PPI
MS.gene24806	MS.gene066464	PPI
MS.gene066464	MS.gene51262	PPI
MS.gene071113	MS.gene066464	PPI
MS.gene066464	MS.gene23881	PPI
MS.gene066464	MS.gene26672	PPI
MS.gene066464	MS.gene014931	PPI
MS.gene066464	MS.gene21888	PPI
MS.gene066464	MS.gene97379	PPI
MS.gene066464	MS.gene066500	PPI
MS.gene066464	MS.gene39623	PPI
MS.gene066464	MS.gene07706	PPI
MS.gene066464	MS.gene071113	PPI
MS.gene066464	MS.gene90400	PPI
MS.gene066464	MS.gene022109	PPI
MS.gene066464	MS.gene041770	PPI
MS.gene066464	MS.gene81055	PPI
MS.gene066464	MS.gene65775	PPI
MS.gene010912	MS.gene066464	PPI
MS.gene066464	MS.gene99554	PPI
MS.gene066464	MS.gene80163	PPI
MS.gene066464	MS.gene02469	PPI
MS.gene23811	MS.gene066464	PPI
MS.gene066464	MS.gene33377	PPI
MS.gene066464	MS.gene51335	PPI
MS.gene066464	MS.gene045937	PPI
MS.gene066464	MS.gene027072	PPI
MS.gene51335	MS.gene066464	PPI
MS.gene066464	MS.gene51278	PPI
MS.gene066464	MS.gene69966	PPI
MS.gene066464	MS.gene87218	PPI
MS.gene068249	MS.gene066464	PPI
MS.gene066464	MS.gene025229	PPI
MS.gene066464	MS.gene30433	PPI
MS.gene066464	MS.gene066501	PPI
MS.gene066464	MS.gene043742	PPI
MS.gene066464	MS.gene062662	PPI
MS.gene066464	MS.gene027441	PPI
MS.gene066464	MS.gene21734	PPI
MS.gene066464	MS.gene30177	PPI
MS.gene066464	MS.gene70008	PPI
MS.gene066464	MS.gene008767	PPI
MS.gene066464	MS.gene008833	PPI
MS.gene066464	MS.gene23811	PPI
MS.gene066464	MS.gene25244	PPI
MS.gene039682	MS.gene066464	PPI
MS.gene066464	MS.gene82740	PPI
MS.gene066464	MS.gene051003	PPI
MS.gene066464	MS.gene48655	PPI
MS.gene066464	MS.gene09785	PPI
MS.gene066464	MS.gene64441	PPI
MS.gene066464	MS.gene066046	PPI
MS.gene26532	MS.gene066464	PPI
MS.gene066464	MS.gene007486	PPI
MS.gene47479	MS.gene066464	PPI
MS.gene066464	MS.gene23810	PPI
MS.gene066464	MS.gene08470	PPI
MS.gene066464	MS.gene027073	PPI
MS.gene066464	MS.gene34712	PPI
MS.gene71204	MS.gene066464	PPI
MS.gene066464	MS.gene65463	PPI
MS.gene066464	MS.gene007485	PPI
MS.gene066464	MS.gene007487	PPI
MS.gene066464	MS.gene037184	PPI
MS.gene36842	MS.gene066464	PPI
MS.gene066464	MS.gene23196	PPI
MS.gene066464	MS.gene067705	PPI
MS.gene066464	MS.gene71204	PPI
MS.gene066464	MS.gene41291	PPI
MS.gene066501	MS.gene066464	PPI
MS.gene066464	MS.gene027075	PPI
MS.gene056455	MS.gene066464	PPI
MS.gene066464	MS.gene061932	PPI
MS.gene066464	MS.gene050457	PPI
MS.gene066464	MS.gene99973	PPI
MS.gene066464	MS.gene30174	PPI
MS.gene066464	MS.gene26021	PPI
MS.gene035805	MS.gene066464	PPI
MS.gene066464	MS.gene064542	PPI
MS.gene69965	MS.gene066464	PPI
MS.gene066464	MS.gene91775	PPI
MS.gene066464	MS.gene25515	PPI
MS.gene066464	MS.gene34651	PPI
MS.gene066464	MS.gene89986	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066464.t1	MTR_8g072510	87.826	345	40	1	1	345	1	343	0.0	617
MS.gene066464.t1	MTR_8g039620	72.000	350	93	2	1	345	1	350	1.17e-177	500
MS.gene066464.t1	MTR_8g062410	73.775	347	80	4	1	345	1	338	2.95e-173	489
MS.gene066464.t1	MTR_3g016210	66.848	368	105	3	1	353	1	366	9.54e-171	483
MS.gene066464.t1	MTR_7g021090	69.883	342	96	3	5	345	2	337	2.29e-169	478
MS.gene066464.t1	MTR_1g059930	68.116	345	109	1	1	344	1	345	4.22e-163	463
MS.gene066464.t1	MTR_8g068990	64.655	348	104	4	1	344	1	333	1.29e-157	450
MS.gene066464.t1	MTR_7g451420	67.203	311	102	0	5	315	2	312	3.20e-150	426
MS.gene066464.t1	MTR_8g069880	65.089	338	116	2	8	344	3	339	5.05e-148	426
MS.gene066464.t1	MTR_8g073260	61.561	346	130	2	1	346	1	343	6.35e-147	422
MS.gene066464.t1	MTR_8g040930	65.986	294	97	1	54	344	1	294	1.48e-136	394
MS.gene066464.t1	MTR_8g041240	65.986	294	97	1	54	344	1	294	1.48e-136	394
MS.gene066464.t1	MTR_8g066670	62.069	348	127	3	1	347	1067	1410	2.68e-135	420
MS.gene066464.t1	MTR_8g467780	58.261	345	133	3	11	344	10	354	2.15e-130	380
MS.gene066464.t1	MTR_3g105650	52.258	310	140	2	10	312	3	311	1.54e-104	314
MS.gene066464.t1	MTR_8g073275	44.413	358	122	7	54	344	1	348	4.04e-86	268
MS.gene066464.t1	MTR_1g069110	26.687	326	204	8	12	327	18	318	1.12e-25	107
MS.gene066464.t1	MTR_7g099580	26.045	311	176	10	24	329	24	285	2.67e-24	102
MS.gene066464.t1	MTR_7g099570	29.897	194	122	3	12	200	9	193	3.23e-21	95.1
MS.gene066464.t1	MTR_2g101320	29.032	217	136	4	43	251	137	343	6.04e-21	94.4
MS.gene066464.t1	MTR_2g101310	30.698	215	131	4	43	249	137	341	8.82e-20	90.9
MS.gene066464.t1	MTR_2g101310	23.714	350	214	12	12	315	142	484	2.55e-12	68.6
MS.gene066464.t1	MTR_2g101310	30.698	215	131	4	43	249	137	341	1.03e-19	90.5
MS.gene066464.t1	MTR_2g101310	23.714	350	214	12	12	315	142	484	1.51e-12	68.9
MS.gene066464.t1	MTR_1g115575	26.829	328	196	9	12	312	135	445	4.20e-18	85.9
MS.gene066464.t1	MTR_7g117620	25.087	287	181	5	47	311	119	393	4.16e-17	82.8
MS.gene066464.t1	MTR_2g096190	24.169	331	214	6	5	311	63	380	4.67e-17	82.8
MS.gene066464.t1	MTR_4g062100	26.104	249	167	4	12	256	74	309	3.39e-15	77.0
MS.gene066464.t1	MTR_1g032100	23.793	290	184	6	47	311	94	371	3.41e-15	77.0
MS.gene066464.t1	MTR_8g105260	23.793	290	184	5	47	311	101	378	2.05e-14	74.7
MS.gene066464.t1	MTR_5g085500	29.936	157	98	4	81	233	8	156	2.72e-12	68.2
MS.gene066464.t1	MTR_5g085810	28.324	173	116	4	63	233	320	486	2.82e-12	68.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066464.t1	AT4G10720	42.138	318	176	2	11	320	4	321	4.01e-82	256
MS.gene066464.t1	AT4G10720	42.138	318	176	2	11	320	4	321	8.35e-82	256
MS.gene066464.t1	AT1G14500	38.068	352	202	4	11	353	4	348	5.19e-81	254
MS.gene066464.t1	AT1G14480	39.441	322	185	2	11	322	4	325	2.98e-78	247
MS.gene066464.t1	AT5G15500	42.903	310	169	3	12	313	6	315	3.61e-75	239
MS.gene066464.t1	AT5G54620	41.503	306	172	2	11	309	4	309	6.33e-73	233
MS.gene066464.t1	AT5G54610	37.624	303	180	3	11	306	4	304	1.03e-64	211
MS.gene066464.t1	AT1G14480	35.577	312	168	3	11	322	4	282	4.49e-58	193
MS.gene066464.t1	AT5G15500	37.321	209	123	3	113	313	1	209	2.57e-30	119
MS.gene066464.t1	AT5G51160	29.197	274	166	4	66	318	35	301	7.28e-29	116
MS.gene066464.t1	AT4G03500	25.228	329	172	10	33	312	199	502	7.92e-18	85.1
MS.gene066464.t1	AT4G03500	25.228	329	172	10	33	312	176	479	1.15e-17	84.7
MS.gene066464.t1	AT4G03500	25.228	329	172	10	33	312	176	479	1.15e-17	84.7
MS.gene066464.t1	AT4G03460	30.698	215	126	5	103	312	290	486	1.38e-17	84.3
MS.gene066464.t1	AT4G03460	30.698	215	126	5	103	312	258	454	1.90e-17	84.0
MS.gene066464.t1	AT5G54700	27.891	294	143	12	27	319	20	245	6.97e-17	82.0
MS.gene066464.t1	AT1G34050	25.177	282	169	8	56	315	162	423	2.47e-16	80.5
MS.gene066464.t1	AT2G01680	23.208	293	188	5	47	314	97	377	3.48e-16	80.1
MS.gene066464.t1	AT4G03490	27.187	320	172	13	12	323	211	477	4.87e-16	79.7
MS.gene066464.t1	AT4G03490	27.187	320	172	13	12	323	201	467	7.13e-16	79.3
MS.gene066464.t1	AT5G54700	28.636	220	119	7	104	319	23	208	7.82e-16	78.2
MS.gene066464.t1	AT4G03490	27.187	320	172	13	12	323	211	477	7.96e-16	79.0
MS.gene066464.t1	AT1G10340	25.625	320	197	8	28	315	118	428	1.26e-15	78.6
MS.gene066464.t1	AT1G07710	26.543	324	200	10	12	311	70	379	1.41e-15	78.2
MS.gene066464.t1	AT1G07710	26.543	324	200	10	12	311	70	379	1.41e-15	78.2
MS.gene066464.t1	AT1G10340	27.068	266	154	7	82	315	175	432	1.52e-15	78.2
MS.gene066464.t1	AT3G12360	26.027	292	175	7	47	312	167	443	1.02e-14	75.9
MS.gene066464.t1	AT3G12360	26.027	292	175	7	47	312	155	431	1.14e-14	75.5
MS.gene066464.t1	AT1G03670	28.000	225	127	6	104	318	279	478	4.33e-14	73.9
MS.gene066464.t1	AT1G05640	26.042	288	177	8	47	311	191	465	4.53e-14	73.9
MS.gene066464.t1	AT3G09550	25.532	329	199	9	12	312	147	457	3.26e-13	71.2
MS.gene066464.t1	AT3G09550	25.532	329	199	9	12	312	147	457	3.26e-13	71.2
MS.gene066464.t1	AT3G09550	25.532	329	199	9	12	312	154	464	3.66e-13	70.9
MS.gene066464.t1	AT5G54710	24.054	370	213	13	1	315	140	496	2.06e-12	68.6
MS.gene066464.t1	AT5G54710	24.054	370	213	13	1	315	95	451	2.07e-12	68.6
MS.gene066464.t1	AT4G03480	25.316	316	166	12	12	313	357	616	6.14e-12	67.4
MS.gene066464.t1	AT4G03480	25.316	316	166	12	12	313	360	619	6.32e-12	67.4
MS.gene066464.t1	AT2G31820	23.611	288	184	9	47	311	227	501	1.90e-11	65.9

Find 70 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACCTTGTTAGAGTTAA+AGG	0.117136	8.3:-29980599	MS.gene066464:CDS
TCAAGATGATCCATACGTTT+TGG	0.300125	8.3:-29980819	MS.gene066464:CDS
TGATCAAATGTGGGATAATC+AGG	0.311341	8.3:+29979979	None:intergenic
AACACCACAAACACAAATAA+TGG	0.318375	8.3:-29980899	MS.gene066464:CDS
TGGGGTAGAAATGGTAAAAT+TGG	0.321057	8.3:+29979753	None:intergenic
ACTGATTTCCCAACATTTCC+TGG	0.324820	8.3:+29979733	None:intergenic
GTTCATTCTTAACAGCAATA+TGG	0.326006	8.3:+29980453	None:intergenic
ATTATCCCACATTTGATCAT+AGG	0.334358	8.3:-29979975	MS.gene066464:CDS
GTCAAGTACTCAATGGATTC+TGG	0.341749	8.3:+29980497	None:intergenic
ATCTCCATTATTTGTGTTTG+TGG	0.350305	8.3:+29980895	None:intergenic
AGATATGAAGGCAAAGAATA+TGG	0.357120	8.3:-29980088	MS.gene066464:CDS
CTCTCTAGTGGCTTCTCCAA+TGG	0.385412	8.3:-29979608	MS.gene066464:intron
TTTACATATTGCTGCATCCA+TGG	0.394377	8.3:-29980762	MS.gene066464:CDS
TTTCAAATTCATAATTTCAA+TGG	0.401833	8.3:+29980724	None:intergenic
GCGAAGAGGGGCTAAAGATC+TGG	0.403132	8.3:-29980384	MS.gene066464:CDS
AACATTTCCTGGGGTAGAAA+TGG	0.413623	8.3:+29979744	None:intergenic
TAGTGCTGAAATGTGCAAAA+TGG	0.415741	8.3:+29980322	None:intergenic
CTCTTCAAGTACTTGTTAGC+TGG	0.417708	8.3:-29980421	MS.gene066464:CDS
TCTCTAGTGGCTTCTCCAAT+GGG	0.422655	8.3:-29979607	MS.gene066464:intron
AGATCAAAGATCACAACTAT+AGG	0.438703	8.3:-29979949	MS.gene066464:CDS
TAGTGGCTTCTCCAATGGGC+TGG	0.441345	8.3:-29979603	MS.gene066464:CDS
AATATTAAACAGAAGGGATA+AGG	0.446119	8.3:-29980354	MS.gene066464:CDS
TGTAAAGGAGTTTCAACAAA+TGG	0.448723	8.3:+29980779	None:intergenic
GTTGGGAAATCAGTCTTGTC+GGG	0.453796	8.3:-29979724	MS.gene066464:CDS
TTTAGCTTCAAAGCAAATGA+AGG	0.453815	8.3:+29980701	None:intergenic
ACACAGGCAGTTCTATTGTT+GGG	0.467417	8.3:-29980123	MS.gene066464:intron
ACTCAATGCTGATTGATAGA+TGG	0.480622	8.3:+29979834	None:intergenic
TTGAAAGCTGCAGCTGAAGC+AGG	0.480701	8.3:-29980869	MS.gene066464:CDS
AACACAGGCAGTTCTATTGT+TGG	0.484666	8.3:-29980124	MS.gene066464:intron
TGTTGGGAAATCAGTCTTGT+CGG	0.490536	8.3:-29979725	MS.gene066464:CDS
AATAATATACTCTTGATCTC+TGG	0.490722	8.3:+29980033	None:intergenic
AGTTAAGTTACTTTCTCAGT+TGG	0.492962	8.3:-29980523	MS.gene066464:CDS
TTTCTACCCCAGGAAATGTT+GGG	0.494162	8.3:-29979741	MS.gene066464:CDS
CTGATTTCCCAACATTTCCT+GGG	0.500204	8.3:+29979734	None:intergenic
ATTTCTACCCCAGGAAATGT+TGG	0.503031	8.3:-29979742	MS.gene066464:CDS
CTCTTCCTTTAACTCTAACA+AGG	0.506203	8.3:+29980594	None:intergenic
GTTAGAGTTAAAGGAAGAGA+AGG	0.510047	8.3:-29980590	MS.gene066464:CDS
TGTTAAGAATGAACAATATG+AGG	0.511815	8.3:-29980444	MS.gene066464:CDS
TTACATATTGCTGCATCCAT+GGG	0.527095	8.3:-29980761	MS.gene066464:CDS
AAGTACTAGTATAGATATGA+AGG	0.527442	8.3:-29980100	MS.gene066464:CDS
AAGAGTATATTATTAAGCGT+TGG	0.530456	8.3:-29980024	MS.gene066464:CDS
AAAATAAAATATTAAACAGA+AGG	0.532425	8.3:-29980361	MS.gene066464:CDS
TCTATACGCTCCAAAACGTA+TGG	0.533250	8.3:+29980809	None:intergenic
CCTCACAGTCAAGTACTCAA+TGG	0.542319	8.3:+29980490	None:intergenic
GGTAGAAATGGTAAAATTGG+AGG	0.549602	8.3:+29979756	None:intergenic
TCTTATCCTATGATCAAATG+TGG	0.558012	8.3:+29979969	None:intergenic
AAATAAAATATTAAACAGAA+GGG	0.562493	8.3:-29980360	MS.gene066464:CDS
CAGAGGAGCAACGTAACACT+TGG	0.565419	8.3:-29979885	MS.gene066464:CDS
ATTTGACTTGCAAAATGAAG+AGG	0.571878	8.3:+29980560	None:intergenic
TAATCAGGGACTTCTAAGCT+AGG	0.572613	8.3:+29979994	None:intergenic
ATGGATGCAGCAATATGTAA+AGG	0.578412	8.3:+29980764	None:intergenic
CTAGCGGTAAACCAGCCCAT+TGG	0.586099	8.3:+29979592	None:intergenic
AGCACTAAGTAGCGACCCAC+AGG	0.591983	8.3:-29980306	MS.gene066464:intron
GATCAAATGTGGGATAATCA+GGG	0.593956	8.3:+29979980	None:intergenic
TTAAACAGAAGGGATAAGGC+AGG	0.594049	8.3:-29980350	MS.gene066464:CDS
TTTGCATAGCGAGATGGATG+GGG	0.598780	8.3:+29980663	None:intergenic
GGCAAAGTCGATATGACCCA+TGG	0.604662	8.3:+29980745	None:intergenic
CTAACCTGATAAATTCCACC+GGG	0.607279	8.3:+29979808	None:intergenic
ACTAACCTGATAAATTCCAC+CGG	0.617401	8.3:+29979807	None:intergenic
CTTATCCTATGATCAAATGT+GGG	0.628873	8.3:+29979970	None:intergenic
CATCTTGAATTACTGCGTAG+AGG	0.646104	8.3:+29980834	None:intergenic
GCTTTGAAGCTAAATCCGCA+AGG	0.665685	8.3:-29980692	MS.gene066464:CDS
TGATTTCCCAACATTTCCTG+GGG	0.666728	8.3:+29979735	None:intergenic
TGGATGGGGCTGAATCCTTG+CGG	0.668802	8.3:+29980677	None:intergenic
AACCTGATAAATTCCACCGG+GGG	0.670751	8.3:+29979810	None:intergenic
TTGGGAAATCAGTCTTGTCG+GGG	0.672939	8.3:-29979723	MS.gene066464:intron
CCATTGAGTACTTGACTGTG+AGG	0.685885	8.3:-29980490	MS.gene066464:CDS
ACCTGATAAATTCCACCGGG+GGG	0.705401	8.3:+29979811	None:intergenic
CATTACAAGAGACATATCAG+AGG	0.719050	8.3:-29979902	MS.gene066464:CDS
TAACCTGATAAATTCCACCG+GGG	0.729886	8.3:+29979809	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATAAAATATTAAACAGA+AGG	-	chr8.3:29980133-29980152	MS.gene066464:intron	10.0%
!!	AAATAAAATATTAAACAGAA+GGG	-	chr8.3:29980134-29980153	MS.gene066464:intron	10.0%
!!!	TATCTTATTTATATATAAGT+TGG	+	chr8.3:29980286-29980305	None:intergenic	10.0%
!!	TGTATTATTCATTAATTTCT+TGG	-	chr8.3:29980346-29980365	MS.gene066464:CDS	15.0%
!!	TTTCAAATTCATAATTTCAA+TGG	+	chr8.3:29979773-29979792	None:intergenic	15.0%
!!!	ATATTTTTTATGATACCATA+TGG	-	chr8.3:29980854-29980873	MS.gene066464:CDS	15.0%
!!!	TATTTATATATAAGTTGGTA+GGG	+	chr8.3:29980281-29980300	None:intergenic	15.0%
!!!	TTATTTATATATAAGTTGGT+AGG	+	chr8.3:29980282-29980301	None:intergenic	15.0%
!!!	ATTTATATATAAGTTGGTAG+GGG	+	chr8.3:29980280-29980299	None:intergenic	20.0%
!	AAGTACTAGTATAGATATGA+AGG	-	chr8.3:29980394-29980413	MS.gene066464:CDS	25.0%
!	AATAATATACTCTTGATCTC+TGG	+	chr8.3:29980464-29980483	None:intergenic	25.0%
!	AATATTAAACAGAAGGGATA+AGG	-	chr8.3:29980140-29980159	MS.gene066464:intron	25.0%
!	AGAGAGAATATTATTCCATA+TGG	+	chr8.3:29980872-29980891	None:intergenic	25.0%
!	AGCTAAAATTGATACAGAAA+AGG	+	chr8.3:29980834-29980853	None:intergenic	25.0%
!	ATAAGATTAAGATTACCTGT+GGG	+	chr8.3:29980206-29980225	None:intergenic	25.0%
!	TGTTAAGAATGAACAATATG+AGG	-	chr8.3:29980050-29980069	MS.gene066464:CDS	25.0%
!!	AAGAGTATATTATTAAGCGT+TGG	-	chr8.3:29980470-29980489	MS.gene066464:CDS	25.0%
	AAAGACCTTGTTAGAGTTAA+AGG	-	chr8.3:29979895-29979914	MS.gene066464:CDS	30.0%
	AACACCACAAACACAAATAA+TGG	-	chr8.3:29979595-29979614	MS.gene066464:CDS	30.0%
	AGATATGAAGGCAAAGAATA+TGG	-	chr8.3:29980406-29980425	MS.gene066464:CDS	30.0%
	AGATCAAAGATCACAACTAT+AGG	-	chr8.3:29980545-29980564	MS.gene066464:CDS	30.0%
	ATCTCCATTATTTGTGTTTG+TGG	+	chr8.3:29979602-29979621	None:intergenic	30.0%
	ATTATCCCACATTTGATCAT+AGG	-	chr8.3:29980519-29980538	MS.gene066464:CDS	30.0%
	CATAAGATTAAGATTACCTG+TGG	+	chr8.3:29980207-29980226	None:intergenic	30.0%
	CTTATCCTATGATCAAATGT+GGG	+	chr8.3:29980527-29980546	None:intergenic	30.0%
	GCAAAACAACAAAAAACGAA+TGG	-	chr8.3:29979849-29979868	MS.gene066464:CDS	30.0%
	GTTCATTCTTAACAGCAATA+TGG	+	chr8.3:29980044-29980063	None:intergenic	30.0%
	TCAAAAAAAATACGCGAAGA+GGG	-	chr8.3:29980097-29980116	MS.gene066464:CDS	30.0%
	TCTTATCCTATGATCAAATG+TGG	+	chr8.3:29980528-29980547	None:intergenic	30.0%
	TGGAATAATATTCTCTCTAG+TGG	-	chr8.3:29980874-29980893	MS.gene066464:CDS	30.0%
	TGTAAAGGAGTTTCAACAAA+TGG	+	chr8.3:29979718-29979737	None:intergenic	30.0%
!	AGTTAAGTTACTTTCTCAGT+TGG	-	chr8.3:29979971-29979990	MS.gene066464:CDS	30.0%
!	CATTAATTTCTTGGTAACAC+AGG	-	chr8.3:29980355-29980374	MS.gene066464:CDS	30.0%
!	CTTCATTTTGCAAGTCAAAT+GGG	-	chr8.3:29979937-29979956	MS.gene066464:CDS	30.0%
!	TCTTCATTTTGCAAGTCAAA+TGG	-	chr8.3:29979936-29979955	MS.gene066464:CDS	30.0%
!	TTTAGCTTCAAAGCAAATGA+AGG	+	chr8.3:29979796-29979815	None:intergenic	30.0%
!!	ATTTGACTTGCAAAATGAAG+AGG	+	chr8.3:29979937-29979956	None:intergenic	30.0%
!!	GAGACATGTGATTTTAGTAA+TGG	+	chr8.3:29980230-29980249	None:intergenic	30.0%
	ACTAACCTGATAAATTCCAC+CGG	+	chr8.3:29980690-29980709	None:intergenic	35.0%
	AGGCGACAAGAACTATATAA+AGG	+	chr8.3:29980252-29980271	None:intergenic	35.0%
	ATGGATGCAGCAATATGTAA+AGG	+	chr8.3:29979733-29979752	None:intergenic	35.0%
	CAAAAAAAATACGCGAAGAG+GGG	-	chr8.3:29980098-29980117	MS.gene066464:CDS	35.0%
	CATTACAAGAGACATATCAG+AGG	-	chr8.3:29980592-29980611	MS.gene066464:CDS	35.0%
	CTCAAAAAAAATACGCGAAG+AGG	-	chr8.3:29980096-29980115	MS.gene066464:CDS	35.0%
	CTCTTCCTTTAACTCTAACA+AGG	+	chr8.3:29979903-29979922	None:intergenic	35.0%
	GATCAAATGTGGGATAATCA+GGG	+	chr8.3:29980517-29980536	None:intergenic	35.0%
	GGTAGAAATGGTAAAATTGG+AGG	+	chr8.3:29980741-29980760	None:intergenic	35.0%
	GTTAGAGTTAAAGGAAGAGA+AGG	-	chr8.3:29979904-29979923	MS.gene066464:CDS	35.0%
	TGATCAAATGTGGGATAATC+AGG	+	chr8.3:29980518-29980537	None:intergenic	35.0%
	TGGGGTAGAAATGGTAAAAT+TGG	+	chr8.3:29980744-29980763	None:intergenic	35.0%
	TTACATATTGCTGCATCCAT+GGG	-	chr8.3:29979733-29979752	MS.gene066464:CDS	35.0%
	TTTACATATTGCTGCATCCA+TGG	-	chr8.3:29979732-29979751	MS.gene066464:CDS	35.0%
!	AATTTTACCATTTCTACCCC+AGG	-	chr8.3:29980743-29980762	MS.gene066464:CDS	35.0%
!	ACTCAATGCTGATTGATAGA+TGG	+	chr8.3:29980663-29980682	None:intergenic	35.0%
!	TAGTGCTGAAATGTGCAAAA+TGG	+	chr8.3:29980175-29980194	None:intergenic	35.0%
!	TCAAGATGATCCATACGTTT+TGG	-	chr8.3:29979675-29979694	MS.gene066464:intron	35.0%
!!	ATATATAAGTTGGTAGGGGA+GGG	+	chr8.3:29980276-29980295	None:intergenic	35.0%
!!	TATATATAAGTTGGTAGGGG+AGG	+	chr8.3:29980277-29980296	None:intergenic	35.0%
	AACACAGGCAGTTCTATTGT+TGG	-	chr8.3:29980370-29980389	MS.gene066464:CDS	40.0%
	AACATTTCCTGGGGTAGAAA+TGG	+	chr8.3:29980753-29980772	None:intergenic	40.0%
	ACACAGGCAGTTCTATTGTT+GGG	-	chr8.3:29980371-29980390	MS.gene066464:CDS	40.0%
	ATTTCTACCCCAGGAAATGT+TGG	-	chr8.3:29980752-29980771	MS.gene066464:CDS	40.0%
	CATCTTGAATTACTGCGTAG+AGG	+	chr8.3:29979663-29979682	None:intergenic	40.0%
	CTAACCTGATAAATTCCACC+GGG	+	chr8.3:29980689-29980708	None:intergenic	40.0%
	CTGATTTCCCAACATTTCCT+GGG	+	chr8.3:29980763-29980782	None:intergenic	40.0%
	TAACCTGATAAATTCCACCG+GGG	+	chr8.3:29980688-29980707	None:intergenic	40.0%
	TAATCAGGGACTTCTAAGCT+AGG	+	chr8.3:29980503-29980522	None:intergenic	40.0%
	TCTATACGCTCCAAAACGTA+TGG	+	chr8.3:29979688-29979707	None:intergenic	40.0%
	TGATTTCCCAACATTTCCTG+GGG	+	chr8.3:29980762-29980781	None:intergenic	40.0%
	TTAAACAGAAGGGATAAGGC+AGG	-	chr8.3:29980144-29980163	MS.gene066464:intron	40.0%
	TTTCTACCCCAGGAAATGTT+GGG	-	chr8.3:29980753-29980772	MS.gene066464:CDS	40.0%
!	ACTGATTTCCCAACATTTCC+TGG	+	chr8.3:29980764-29980783	None:intergenic	40.0%
!	CTCTTCAAGTACTTGTTAGC+TGG	-	chr8.3:29980073-29980092	MS.gene066464:CDS	40.0%
!	GTCAAGTACTCAATGGATTC+TGG	+	chr8.3:29980000-29980019	None:intergenic	40.0%
!	TGTTGGGAAATCAGTCTTGT+CGG	-	chr8.3:29980769-29980788	MS.gene066464:CDS	40.0%
!	TTTTGCATAGCGAGATGGAT+GGG	+	chr8.3:29979835-29979854	None:intergenic	40.0%
!!	TATATAAGTTGGTAGGGGAG+GGG	+	chr8.3:29980275-29980294	None:intergenic	40.0%
!!!	TGTTGTTTTGCATAGCGAGA+TGG	+	chr8.3:29979840-29979859	None:intergenic	40.0%
	AACCTGATAAATTCCACCGG+GGG	+	chr8.3:29980687-29980706	None:intergenic	45.0%
	CCATTGAGTACTTGACTGTG+AGG	-	chr8.3:29980004-29980023	MS.gene066464:CDS	45.0%
	CCTCACAGTCAAGTACTCAA+TGG	+	chr8.3:29980007-29980026	None:intergenic	45.0%
	TCTCTAGTGGCTTCTCCAAT+GGG	-	chr8.3:29980887-29980906	MS.gene066464:CDS	45.0%
	TTTGCATAGCGAGATGGATG+GGG	+	chr8.3:29979834-29979853	None:intergenic	45.0%
!	GTTGGGAAATCAGTCTTGTC+GGG	-	chr8.3:29980770-29980789	MS.gene066464:CDS	45.0%
!	GTTTTGCATAGCGAGATGGA+TGG	+	chr8.3:29979836-29979855	None:intergenic	45.0%
!	TTGGGAAATCAGTCTTGTCG+GGG	-	chr8.3:29980771-29980790	MS.gene066464:CDS	45.0%
!!	GCTTTGAAGCTAAATCCGCA+AGG	-	chr8.3:29979802-29979821	MS.gene066464:CDS	45.0%
	ACCTGATAAATTCCACCGGG+GGG	+	chr8.3:29980686-29980705	None:intergenic	50.0%
	CAGAGGAGCAACGTAACACT+TGG	-	chr8.3:29980609-29980628	MS.gene066464:CDS	50.0%
	CTCTCTAGTGGCTTCTCCAA+TGG	-	chr8.3:29980886-29980905	MS.gene066464:CDS	50.0%
	GGCAAAGTCGATATGACCCA+TGG	+	chr8.3:29979752-29979771	None:intergenic	50.0%
	TTGAAAGCTGCAGCTGAAGC+AGG	-	chr8.3:29979625-29979644	MS.gene066464:intron	50.0%
	AGCACTAAGTAGCGACCCAC+AGG	-	chr8.3:29980188-29980207	MS.gene066464:intron	55.0%
	CTAGCGGTAAACCAGCCCAT+TGG	+	chr8.3:29980905-29980924	None:intergenic	55.0%
	GCGAAGAGGGGCTAAAGATC+TGG	-	chr8.3:29980110-29980129	MS.gene066464:CDS	55.0%
	TAGTGGCTTCTCCAATGGGC+TGG	-	chr8.3:29980891-29980910	MS.gene066464:CDS	55.0%
	TCCCCCCGGTGGAATTTATC+AGG	-	chr8.3:29980682-29980701	MS.gene066464:CDS	55.0%
	TGGATGGGGCTGAATCCTTG+CGG	+	chr8.3:29979820-29979839	None:intergenic	55.0%
!	CAATCAGCATTGAGTCCCCC+CGG	-	chr8.3:29980668-29980687	MS.gene066464:CDS	55.0%
!!	ATAAGTTGGTAGGGGAGGGG+AGG	+	chr8.3:29980272-29980291	None:intergenic	55.0%
!	TCAGCATTGAGTCCCCCCGG+TGG	-	chr8.3:29980671-29980690	MS.gene066464:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	29979592	29980924	29979592	ID=MS.gene066464
chr8.3	mRNA	29979592	29980924	29979592	ID=MS.gene066464.t1;Parent=MS.gene066464
chr8.3	exon	29980307	29980924	29980307	ID=MS.gene066464.t1.exon1;Parent=MS.gene066464.t1
chr8.3	CDS	29980307	29980924	29980307	ID=cds.MS.gene066464.t1;Parent=MS.gene066464.t1
chr8.3	exon	29979724	29980139	29979724	ID=MS.gene066464.t1.exon2;Parent=MS.gene066464.t1
chr8.3	CDS	29979724	29980139	29979724	ID=cds.MS.gene066464.t1;Parent=MS.gene066464.t1
chr8.3	exon	29979592	29979622	29979592	ID=MS.gene066464.t1.exon3;Parent=MS.gene066464.t1
chr8.3	CDS	29979592	29979622	29979592	ID=cds.MS.gene066464.t1;Parent=MS.gene066464.t1

Gene Sequence

>MS.gene066464

ATGAACACCACAAACACAAATAATGGAGATCGATTGAAAGCTGCAGCTGAAGCAGGTGATATAGATCTCCTCTACGCAGTAATTCAAGATGATCCATACGTTTTGGAGCGTATAGATTCAATACCATTTGTTGAAACTCCTTTACATATTGCTGCATCCATGGGTCATATCGACTTTGCCATTGAAATTATGAATTTGAAACCTTCATTTGCTTTGAAGCTAAATCCGCAAGGATTCAGCCCCATCCATCTCGCTATGCAAAACAACAAAAAACGAATGGTGTATCACTTTGTGAGCATCAATAAAGACCTTGTTAGAGTTAAAGGAAGAGAAGGCATAACTCCTCTTCATTTTGCAAGTCAAATGGGTGATGTTCGAAAGTTAAGTTACTTTCTCAGTTGGTGTCCAGAATCCATTGAGTACTTGACTGTGAGGCGCGAGACTGCACTCCATATTGCTGTTAAGAATGAACAATATGAGGCTCTTCAAGTACTTGTTAGCTGGCTCAAAAAAAATACGCGAAGAGGGGCTAAAGATCTGGAAAATAAAATATTAAACAGAAGGGATAAGGCAGGCAATACCATTTTGCACATTTCAGCACTAAGTAGCGACCCACAGGTAATCTTAATCTTATGCCATTACTAAAATCACATGTCTCCTTTATATAGTTCTTGTCGCCTCCCCTCCCCTACCAACTTATATATAAATAAGATATATATAGAATTGCTAGTATGAATGAATGATCTCTAACAATTGTATTATTCATTAATTTCTTGGTAACACAGGCAGTTCTATTGTTGGGAAGTACTAGTATAGATATGAAGGCAAAGAATATGGAGAACAAAACTGCATTAGACATAGCAAGCACACCAGAGATCAAGAGTATATTATTAAGCGTTGGAGCAAAACCTAGCTTAGAAGTCCCTGATTATCCCACATTTGATCATAGGATAAGATCAAAGATCACAACTATAGGTGCTCTGACAATTTATACAGATCGCATTACAAGAGACATATCAGAGGAGCAACGTAACACTTGGTTGATAGTTGCGACTCTTGTTGCAACTGCCATCTATCAATCAGCATTGAGTCCCCCCGGTGGAATTTATCAGGTTAGTGCTAGTGACACTAACGTGAACATCACTTCCTCCAATTTTACCATTTCTACCCCAGGAAATGTTGGGAAATCAGTCTTGTCGGGGTATGAATTCTTTTTGTTTTTATTTGTTAATATGTATTCCTTTTCTGTATCAATTTTAGCTATATTTTTTATGATACCATATGGAATAATATTCTCTCTAGTGGCTTCTCCAATGGGCTGGTTTACCGCTAG

Protein sequence

>MS.gene066464.t1

MNTTNTNNGDRLKAAAEAGDIDLLYAVIQDDPYVLERIDSIPFVETPLHIAASMGHIDFAIEIMNLKPSFALKLNPQGFSPIHLAMQNNKKRMVYHFVSINKDLVRVKGREGITPLHFASQMGDVRKLSYFLSWCPESIEYLTVRRETALHIAVKNEQYEALQVLVSWLKKNTRRGAKDLENKILNRRDKAGNTILHISALSSDPQAVLLLGSTSIDMKAKNMENKTALDIASTPEIKSILLSVGAKPSLEVPDYPTFDHRIRSKITTIGALTIYTDRITRDISEEQRNTWLIVATLVATAIYQSALSPPGGIYQVSASDTNVNITSSNFTISTPGNVGKSVLSGGFSNGLVYR