AlfalfaGEDB | MS.gene51278

M. sativa cultivar XinJiangDaYe / MS.gene51278

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13962.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51278.t1	XP_003598604.2	52.1	361	139	5	3	335	4	358	1.50E-68	270

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51278.t1	Q8GYH5	47.7	304	139	5	8	295	4	303	9.2e-14	79.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51278.t1	G7IYT6	52.1	361	139	5	3	335	4	358	1.1e-68	270.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene066501	MS.gene51278	PPI
MS.gene25244	MS.gene51278	PPI
MS.gene014931	MS.gene51278	PPI
MS.gene08470	MS.gene51278	PPI
MS.gene63085	MS.gene51278	PPI
MS.gene056455	MS.gene51278	PPI
MS.gene89986	MS.gene51278	PPI
MS.gene26019	MS.gene51278	PPI
MS.gene30174	MS.gene51278	PPI
MS.gene23881	MS.gene51278	PPI
MS.gene062662	MS.gene51278	PPI
MS.gene73119	MS.gene51278	PPI
MS.gene035805	MS.gene51278	PPI
MS.gene30177	MS.gene51278	PPI
MS.gene69965	MS.gene51278	PPI
MS.gene65463	MS.gene51278	PPI
MS.gene066500	MS.gene51278	PPI
MS.gene21888	MS.gene51278	PPI
MS.gene51278	MS.gene65775	PPI
MS.gene82740	MS.gene51278	PPI
MS.gene51278	MS.gene80163	PPI
MS.gene09785	MS.gene51278	PPI
MS.gene54764	MS.gene51278	PPI
MS.gene30172	MS.gene51278	PPI
MS.gene045937	MS.gene51278	PPI
MS.gene23852	MS.gene51278	PPI
MS.gene69966	MS.gene51278	PPI
MS.gene97943	MS.gene51278	PPI
MS.gene071113	MS.gene51278	PPI
MS.gene51278	MS.gene87218	PPI
MS.gene027071	MS.gene51278	PPI
MS.gene67157	MS.gene51278	PPI
MS.gene51278	MS.gene23881	PPI
MS.gene30433	MS.gene51278	PPI
MS.gene012203	MS.gene51278	PPI
MS.gene022109	MS.gene51278	PPI
MS.gene34651	MS.gene51278	PPI
MS.gene90400	MS.gene51278	PPI
MS.gene010910	MS.gene51278	PPI
MS.gene32726	MS.gene51278	PPI
MS.gene025229	MS.gene51278	PPI
MS.gene067705	MS.gene51278	PPI
MS.gene063222	MS.gene51278	PPI
MS.gene25515	MS.gene51278	PPI
MS.gene07706	MS.gene51278	PPI
MS.gene027074	MS.gene51278	PPI
MS.gene51278	MS.gene008833	PPI
MS.gene69687	MS.gene51278	PPI
MS.gene87218	MS.gene51278	PPI
MS.gene25024	MS.gene51278	PPI
MS.gene51278	MS.gene48655	PPI
MS.gene23811	MS.gene51278	PPI
MS.gene51258	MS.gene51278	PPI
MS.gene23810	MS.gene51278	PPI
MS.gene51335	MS.gene51278	PPI
MS.gene024753	MS.gene51278	PPI
MS.gene78281	MS.gene51278	PPI
MS.gene005995	MS.gene51278	PPI
MS.gene037950	MS.gene51278	PPI
MS.gene51278	MS.gene027072	PPI
MS.gene70008	MS.gene51278	PPI
MS.gene068249	MS.gene51278	PPI
MS.gene051003	MS.gene51278	PPI
MS.gene64441	MS.gene51278	PPI
MS.gene24806	MS.gene51278	PPI
MS.gene004844	MS.gene51278	PPI
MS.gene30176	MS.gene51278	PPI
MS.gene51278	MS.gene067705	PPI
MS.gene32723	MS.gene51278	PPI
MS.gene007487	MS.gene51278	PPI
MS.gene007485	MS.gene51278	PPI
MS.gene018518	MS.gene51278	PPI
MS.gene037184	MS.gene51278	PPI
MS.gene066464	MS.gene51278	PPI
MS.gene51278	MS.gene99973	PPI
MS.gene26021	MS.gene51278	PPI
MS.gene51262	MS.gene51278	PPI
MS.gene050270	MS.gene51278	PPI
MS.gene02469	MS.gene51278	PPI
MS.gene008833	MS.gene51278	PPI
MS.gene24922	MS.gene51278	PPI
MS.gene027073	MS.gene51278	PPI
MS.gene064542	MS.gene51278	PPI
MS.gene010912	MS.gene51278	PPI
MS.gene050457	MS.gene51278	PPI
MS.gene008767	MS.gene51278	PPI
MS.gene34712	MS.gene51278	PPI
MS.gene39623	MS.gene51278	PPI
MS.gene065848	MS.gene51278	PPI
MS.gene027441	MS.gene51278	PPI
MS.gene36842	MS.gene51278	PPI
MS.gene99554	MS.gene51278	PPI
MS.gene066046	MS.gene51278	PPI
MS.gene99588	MS.gene51278	PPI
MS.gene027075	MS.gene51278	PPI
MS.gene41291	MS.gene51278	PPI
MS.gene27223	MS.gene51278	PPI
MS.gene038519	MS.gene51278	PPI
MS.gene050272	MS.gene51278	PPI
MS.gene81055	MS.gene51278	PPI
MS.gene052956	MS.gene51278	PPI
MS.gene91775	MS.gene51278	PPI
MS.gene22482	MS.gene51278	PPI
MS.gene043662	MS.gene51278	PPI
MS.gene34009	MS.gene51278	PPI
MS.gene039682	MS.gene51278	PPI
MS.gene043742	MS.gene51278	PPI
MS.gene061932	MS.gene51278	PPI
MS.gene48655	MS.gene51278	PPI
MS.gene85534	MS.gene51278	PPI
MS.gene26532	MS.gene51278	PPI
MS.gene042783	MS.gene51278	PPI
MS.gene51278	MS.gene32723	PPI
MS.gene066467	MS.gene51278	PPI
MS.gene47479	MS.gene51278	PPI
MS.gene51278	MS.gene053363	PPI
MS.gene21734	MS.gene51278	PPI
MS.gene33377	MS.gene51278	PPI
MS.gene23196	MS.gene51278	PPI
MS.gene71204	MS.gene51278	PPI
MS.gene007486	MS.gene51278	PPI
MS.gene51278	MS.gene32726	PPI
MS.gene80163	MS.gene51278	PPI
MS.gene51278	MS.gene71122	PPI
MS.gene041770	MS.gene51278	PPI
MS.gene71122	MS.gene51278	PPI
MS.gene51278	MS.gene60920	PPI
MS.gene51278	MS.gene92243	PPI
MS.gene26672	MS.gene51278	PPI
MS.gene97379	MS.gene51278	PPI
MS.gene99973	MS.gene51278	PPI
MS.gene050456	MS.gene51278	PPI
MS.gene058128	MS.gene51278	PPI
MS.gene65775	MS.gene51278	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51278.t1	MTR_8g039620	64.306	353	108	4	5	343	10	358	3.09e-156	446
MS.gene51278.t1	MTR_3g016210	66.185	346	87	4	3	324	4	343	8.53e-154	439
MS.gene51278.t1	MTR_8g072510	64.756	349	103	5	1	335	1	343	1.83e-149	429
MS.gene51278.t1	MTR_7g021090	63.352	352	97	6	1	335	1	337	1.84e-148	425
MS.gene51278.t1	MTR_8g073260	60.694	346	115	6	1	332	1	339	4.68e-141	407
MS.gene51278.t1	MTR_8g062410	64.080	348	97	5	3	335	4	338	3.52e-140	405
MS.gene51278.t1	MTR_1g059930	61.944	360	114	6	1	343	1	354	2.11e-139	403
MS.gene51278.t1	MTR_7g451420	62.733	322	101	4	1	309	1	316	4.44e-133	382
MS.gene51278.t1	MTR_8g068990	57.423	357	116	6	4	344	7	343	1.06e-132	386
MS.gene51278.t1	MTR_8g069880	58.807	352	126	3	5	343	3	348	4.80e-130	380
MS.gene51278.t1	MTR_8g066670	58.659	358	127	5	1	344	1067	1417	3.54e-120	379
MS.gene51278.t1	MTR_8g040930	59.032	310	103	6	52	344	2	304	4.10e-118	347
MS.gene51278.t1	MTR_8g041240	59.032	310	103	6	52	344	2	304	4.10e-118	347
MS.gene51278.t1	MTR_8g467780	56.667	330	116	4	7	314	9	333	2.94e-117	347
MS.gene51278.t1	MTR_3g105650	51.438	313	131	5	7	302	3	311	1.78e-102	308
MS.gene51278.t1	MTR_8g073275	57.500	160	46	2	52	197	2	153	1.76e-52	180
MS.gene51278.t1	MTR_1g069110	28.076	317	190	9	16	317	25	318	1.61e-28	115
MS.gene51278.t1	MTR_7g099580	26.531	294	174	6	18	307	21	276	4.89e-28	112
MS.gene51278.t1	MTR_7g099570	25.806	279	190	4	9	279	9	278	3.26e-20	92.0
MS.gene51278.t1	MTR_2g101320	29.670	182	118	2	37	218	134	305	4.29e-16	79.7
MS.gene51278.t1	MTR_1g115575	26.190	336	186	12	44	345	169	476	6.74e-15	76.3
MS.gene51278.t1	MTR_7g117620	24.653	288	174	8	44	301	119	393	6.13e-14	73.2
MS.gene51278.t1	MTR_2g101310	27.933	179	119	2	40	218	137	305	2.16e-13	71.6
MS.gene51278.t1	MTR_2g101310	27.778	180	118	2	40	218	137	305	3.74e-13	70.9
MS.gene51278.t1	MTR_4g062100	24.161	298	208	7	5	301	104	384	4.68e-13	70.5
MS.gene51278.t1	MTR_2g096190	22.973	296	199	5	12	301	108	380	1.76e-11	65.5
MS.gene51278.t1	MTR_7g100430	23.823	361	202	13	42	345	124	468	2.80e-11	65.1
MS.gene51278.t1	MTR_8g105260	23.103	290	179	6	44	301	101	378	5.14e-11	64.3
MS.gene51278.t1	MTR_1g032100	23.183	289	178	6	45	301	95	371	7.84e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51278.t1	AT4G10720	38.227	361	200	6	8	347	4	362	2.65e-76	242
MS.gene51278.t1	AT4G10720	40.373	322	173	5	8	312	4	323	1.32e-75	239
MS.gene51278.t1	AT5G15500	38.253	332	186	5	9	323	6	335	2.93e-71	229
MS.gene51278.t1	AT5G54620	40.129	309	167	4	7	299	3	309	5.97e-66	214
MS.gene51278.t1	AT1G14480	36.310	336	192	4	8	323	4	337	1.98e-65	213
MS.gene51278.t1	AT1G14500	35.185	324	190	3	8	313	4	325	1.91e-61	203
MS.gene51278.t1	AT5G54610	35.811	296	170	5	16	295	12	303	1.09e-57	193
MS.gene51278.t1	AT1G14480	34.675	323	172	5	8	323	4	294	2.29e-52	178
MS.gene51278.t1	AT5G15500	33.766	231	134	5	110	323	1	229	9.88e-31	119
MS.gene51278.t1	AT5G51160	28.000	300	173	7	41	308	13	301	5.24e-25	105
MS.gene51278.t1	AT5G54700	25.697	323	169	10	24	344	20	273	1.48e-15	77.8
MS.gene51278.t1	AT5G54700	28.175	252	137	8	100	344	22	236	2.20e-15	76.6
MS.gene51278.t1	AT3G09550	26.220	328	185	11	12	302	157	464	7.90e-15	75.9
MS.gene51278.t1	AT3G09550	26.220	328	185	11	12	302	150	457	7.99e-15	75.9
MS.gene51278.t1	AT3G09550	26.220	328	185	11	12	302	150	457	7.99e-15	75.9
MS.gene51278.t1	AT1G10340	27.715	267	144	7	79	305	171	428	1.75e-14	75.1
MS.gene51278.t1	AT1G10340	27.715	267	144	7	79	305	175	432	1.99e-14	74.7
MS.gene51278.t1	AT2G24600	26.316	266	149	7	79	305	175	432	3.32e-14	73.9
MS.gene51278.t1	AT2G24600	26.316	266	149	7	79	305	175	432	3.32e-14	73.9
MS.gene51278.t1	AT2G24600	24.908	273	144	6	79	305	175	432	5.03e-14	73.6
MS.gene51278.t1	AT2G24600	24.908	273	144	6	79	305	175	432	5.03e-14	73.6
MS.gene51278.t1	AT1G34050	22.692	260	172	3	65	305	174	423	1.06e-13	72.4
MS.gene51278.t1	AT3G12360	25.373	335	190	10	44	345	155	462	2.49e-13	71.2
MS.gene51278.t1	AT3G12360	25.373	335	190	10	44	345	167	474	2.68e-13	71.2
MS.gene51278.t1	AT1G05640	26.552	290	166	10	44	301	191	465	5.73e-13	70.5
MS.gene51278.t1	AT4G03500	26.697	221	125	7	98	302	303	502	7.02e-13	70.1
MS.gene51278.t1	AT4G03500	26.697	221	125	7	98	302	280	479	8.25e-13	69.7
MS.gene51278.t1	AT4G03500	26.697	221	125	7	98	302	280	479	8.25e-13	69.7
MS.gene51278.t1	AT2G31820	25.460	326	181	11	21	301	193	501	1.19e-11	66.2
MS.gene51278.t1	AT5G54710	27.203	261	146	11	79	305	246	496	1.25e-11	66.2
MS.gene51278.t1	AT5G54710	27.203	261	146	11	79	305	201	451	1.30e-11	66.2
MS.gene51278.t1	AT2G01680	21.605	324	208	6	44	334	97	407	5.11e-11	64.3

Find 54 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATTTGTCGGTTTACTTTAT+TGG	0.166765	6.3:+77433167	MS.gene51278:CDS
CTGAAAGCTGCAGCTGAATT+AGG	0.220033	6.3:+77431115	MS.gene51278:CDS
ATTTGTCGGTTTACTTTATT+GGG	0.234110	6.3:+77433168	MS.gene51278:CDS
CAGGCCCTTCAAGTACTTCT+TGG	0.237371	6.3:+77431559	MS.gene51278:CDS
TCATAATTTCAGTGGCAAAT+TGG	0.275256	6.3:-77431252	None:intergenic
GTCAAGAATTCAATGGATTC+TGG	0.308393	6.3:-77431487	None:intergenic
TCAAACATGAACACATATAA+TGG	0.362911	6.3:+77431085	None:intergenic
CTTTGCACATCGCTGCATCT+AGG	0.375293	6.3:+77431221	MS.gene51278:CDS
CCCAGAAAATGTTGGGAGTT+CGG	0.380814	6.3:+77432931	MS.gene51278:CDS
GGGGCTCACGATTGATTGAT+AGG	0.393937	6.3:-77432834	None:intergenic
CGTTAAGAATGATCAGTTCC+AGG	0.406539	6.3:+77431540	MS.gene51278:CDS
CCCTTCAAGTACTTCTTGGT+TGG	0.412618	6.3:+77431563	MS.gene51278:CDS
TTTGCACATCGCTGCATCTA+GGG	0.428177	6.3:+77431222	MS.gene51278:CDS
TCTTGGAAGCTAAATGTTGA+AGG	0.439916	6.3:+77431292	MS.gene51278:CDS
CGGTTTACTTTATTGGGCTA+CGG	0.446448	6.3:+77433174	MS.gene51278:CDS
TGCAAAGGAGTTTCAACAAA+TGG	0.447385	6.3:-77431205	None:intergenic
GGTAATAATAGTAGAATTTG+AGG	0.463196	6.3:-77432909	None:intergenic
CTGGAACTGATCATTCTTAA+CGG	0.463525	6.3:-77431539	None:intergenic
TTTAGCTTCCAAGAAAATGA+TGG	0.465488	6.3:-77431283	None:intergenic
TCTCACAGTCAAGAATTCAA+TGG	0.466611	6.3:-77431494	None:intergenic
TTATTGGTAATGGTATTTGT+CGG	0.474507	6.3:+77433154	MS.gene51278:CDS
TTATTACCCCAGAAAATGTT+GGG	0.478902	6.3:+77432924	MS.gene51278:CDS
GTATTAGTGACTTGTGAGGC+AGG	0.480845	6.3:-77432665	None:intergenic
CAAGAGAGGTGCAAAAGAGC+TGG	0.493000	6.3:+77431600	MS.gene51278:CDS
ATTATTACCCCAGAAAATGT+TGG	0.500996	6.3:+77432923	MS.gene51278:CDS
AGCATTAATAAGTGAACCAC+AGG	0.518202	6.3:+77431681	MS.gene51278:CDS
ATCCATCTTGCTATGCAAAA+CGG	0.531789	6.3:+77431325	MS.gene51278:CDS
AAAGAACTTGTTAAAGTGCA+AGG	0.532557	6.3:+77431385	MS.gene51278:CDS
ATAATTTCTATGGGTCGCAT+TGG	0.534035	6.3:+77432746	MS.gene51278:CDS
GCCAACCAAGAAGTACTTGA+AGG	0.535702	6.3:-77431564	None:intergenic
ATTTGACTTGCAAAATGAAG+AGG	0.542519	6.3:-77431424	None:intergenic
GCAAAACGGTCAAACAATGA+TGG	0.544713	6.3:+77431339	MS.gene51278:CDS
CATTGGAAGAAATATATTAG+TGG	0.544754	6.3:+77432763	MS.gene51278:CDS
CAAGAAGTACTTGAAGGGCC+TGG	0.547051	6.3:-77431558	None:intergenic
CTCAAAACAAATTGCAAGAG+AGG	0.557652	6.3:+77431586	MS.gene51278:CDS
AAAGAAAATACTAAATCAGA+AGG	0.561136	6.3:+77431624	MS.gene51278:CDS
GTTAAAGTGCAAGGAAGAGA+AGG	0.568998	6.3:+77431394	MS.gene51278:CDS
CTAAATCAGAAGGATGAGGC+AGG	0.569601	6.3:+77431634	MS.gene51278:CDS
TTAGCCTGATAAACTCCACC+AGG	0.571244	6.3:-77432857	None:intergenic
TTTCAACATCATAATTTCAG+TGG	0.573986	6.3:-77431260	None:intergenic
TTTGCATAGCAAGATGGATG+GGG	0.575547	6.3:-77431321	None:intergenic
AATACTAAATCAGAAGGATG+AGG	0.578779	6.3:+77431630	MS.gene51278:CDS
TTGCACATCGCTGCATCTAG+GGG	0.586343	6.3:+77431223	MS.gene51278:CDS
TCTTAGTCTATCTGCAAGTG+TGG	0.592366	6.3:-77432690	None:intergenic
TAGTGGAGCAACGTAACACT+TGG	0.605964	6.3:+77432780	MS.gene51278:CDS
CTAGATGCAGCGATGTGCAA+AGG	0.614402	6.3:-77431220	None:intergenic
TTTACTTTATTGGGCTACGG+TGG	0.616619	6.3:+77433177	MS.gene51278:CDS
CTTAGTCTATCTGCAAGTGT+GGG	0.621240	6.3:-77432689	None:intergenic
CCAACCAAGAAGTACTTGAA+GGG	0.638063	6.3:-77431563	None:intergenic
GCCTGATAAACTCCACCAGG+GGG	0.647842	6.3:-77432854	None:intergenic
AGCCTGATAAACTCCACCAG+GGG	0.665796	6.3:-77432855	None:intergenic
TAGCCTGATAAACTCCACCA+GGG	0.682940	6.3:-77432856	None:intergenic
CCTGATAAACTCCACCAGGG+GGG	0.741917	6.3:-77432853	None:intergenic
GGGAGTATTAGTGACTTGTG+AGG	0.784610	6.3:-77432669	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATGTAATTAATTTTATGT+GGG	-	chr6.3:77432308-77432327	None:intergenic	10.0%
!!	AAATAACATTAATGTTTCAT+TGG	-	chr6.3:77432172-77432191	None:intergenic	15.0%
!!	AATAAAAAGGAAATCATATT+CGG	-	chr6.3:77432992-77433011	None:intergenic	15.0%
!!	ATATTGCTATATAATTTCTA+TGG	+	chr6.3:77433093-77433112	MS.gene51278:intron	15.0%
!!	TGAATAATTAAGGATATAAT+AGG	-	chr6.3:77432197-77432216	None:intergenic	15.0%
!!!	GAAATGTAATTAATTTTATG+TGG	-	chr6.3:77432309-77432328	None:intergenic	15.0%
!!!	TACTAGAATTGATAATAAAA+AGG	-	chr6.3:77433005-77433024	None:intergenic	15.0%
!!!	TGTAGTAATATAATTCATTT+TGG	+	chr6.3:77431958-77431977	MS.gene51278:intron	15.0%
!!!	TTTTTTTATTGATGATTACT+TGG	+	chr6.3:77432505-77432524	MS.gene51278:intron	15.0%
!!	AAAGAAAATACTAAATCAGA+AGG	+	chr6.3:77431624-77431643	MS.gene51278:CDS	20.0%
!!	AAAGACTTGTATAAATTTGA+AGG	+	chr6.3:77432550-77432569	MS.gene51278:intron	20.0%
!!	AAATGTGTGACATTTAATAT+AGG	+	chr6.3:77432438-77432457	MS.gene51278:intron	20.0%
!!	AATTAGAAAATAACACATCA+AGG	+	chr6.3:77431766-77431785	MS.gene51278:intron	20.0%
!!	AGAAAAAGTGATAATTTCTA+TGG	+	chr6.3:77432736-77432755	MS.gene51278:CDS	20.0%
!!	CAATATACAAACAAATTTAC+TGG	-	chr6.3:77433079-77433098	None:intergenic	20.0%
!!	GAAAAAGTGATAATTTCTAT+GGG	+	chr6.3:77432737-77432756	MS.gene51278:CDS	20.0%
!!	TCTATATGCTCAAAAATATA+TGG	-	chr6.3:77431178-77431197	None:intergenic	20.0%
!!	TTGTAAAACGACATATAATT+TGG	-	chr6.3:77432147-77432166	None:intergenic	20.0%
!!!	ATGTGTTATTTTCTAATTGA+GGG	-	chr6.3:77431764-77431783	None:intergenic	20.0%
!!!	TTTTCTCATATCATTTATTC+AGG	+	chr6.3:77432249-77432268	MS.gene51278:intron	20.0%
!	AAATTTGAAGGCAAAAAACT+TGG	+	chr6.3:77432562-77432581	MS.gene51278:intron	25.0%
!	AATTGAAAAAAGAAGGAATG+CGG	-	chr6.3:77432969-77432988	None:intergenic	25.0%
!	ATTTCTTAATACGTGTGAAA+TGG	+	chr6.3:77432324-77432343	MS.gene51278:intron	25.0%
!	CATTGGAAGAAATATATTAG+TGG	+	chr6.3:77432763-77432782	MS.gene51278:CDS	25.0%
!	GAGAGAGTAATGAATAATTA+AGG	-	chr6.3:77432207-77432226	None:intergenic	25.0%
!	GGTAATAATAGTAGAATTTG+AGG	-	chr6.3:77432912-77432931	None:intergenic	25.0%
!	TACAAACAAATTTACTGGAA+TGG	-	chr6.3:77433074-77433093	None:intergenic	25.0%
!	TATTCGGAATTGAAAAAAGA+AGG	-	chr6.3:77432976-77432995	None:intergenic	25.0%
!	TTTAGTCACTAAATTCCAAA+TGG	+	chr6.3:77431831-77431850	MS.gene51278:intron	25.0%
!	TTTCAACATCATAATTTCAG+TGG	-	chr6.3:77431263-77431282	None:intergenic	25.0%
!!	GCTAATTCTTTACTTTAAAG+TGG	-	chr6.3:77431865-77431884	None:intergenic	25.0%
!!!	ATTTGTCGGTTTACTTTATT+GGG	+	chr6.3:77433168-77433187	MS.gene51278:CDS	25.0%
!!!	GATGTGTTATTTTCTAATTG+AGG	-	chr6.3:77431765-77431784	None:intergenic	25.0%
!!!	TATTTGTCGGTTTACTTTAT+TGG	+	chr6.3:77433167-77433186	MS.gene51278:CDS	25.0%
!!!	TGTGTTATTTTCTAATTGAG+GGG	-	chr6.3:77431763-77431782	None:intergenic	25.0%
!!!	TTATTGGTAATGGTATTTGT+CGG	+	chr6.3:77433154-77433173	MS.gene51278:CDS	25.0%
!!!	TTTTATTGATGATTACTTGG+TGG	+	chr6.3:77432508-77432527	MS.gene51278:intron	25.0%
	AAGCGACATACAATTTAAGA+CGG	-	chr6.3:77432109-77432128	None:intergenic	30.0%
	AATACTAAATCAGAAGGATG+AGG	+	chr6.3:77431630-77431649	MS.gene51278:CDS	30.0%
	AGTACATTGAAAATACGAAG+TGG	+	chr6.3:77432387-77432406	MS.gene51278:intron	30.0%
	ATACGAAGTGGTACTTTATT+TGG	+	chr6.3:77432399-77432418	MS.gene51278:intron	30.0%
	ATTATTACCCCAGAAAATGT+TGG	+	chr6.3:77432923-77432942	MS.gene51278:CDS	30.0%
	CATGAACGATCTGTAATAAA+TGG	+	chr6.3:77432480-77432499	MS.gene51278:intron	30.0%
	GTGTGACATTTAATATAGGA+TGG	+	chr6.3:77432442-77432461	MS.gene51278:intron	30.0%
	TAAAAAGCTGCTAAGAAAGA+TGG	-	chr6.3:77433137-77433156	None:intergenic	30.0%
	TCATAATTTCAGTGGCAAAT+TGG	-	chr6.3:77431255-77431274	None:intergenic	30.0%
	TGACATTTAATATAGGATGG+AGG	+	chr6.3:77432445-77432464	MS.gene51278:intron	30.0%
	TTATTACCCCAGAAAATGTT+GGG	+	chr6.3:77432924-77432943	MS.gene51278:CDS	30.0%
!	CTTCATTTTGCAAGTCAAAT+TGG	+	chr6.3:77431427-77431446	MS.gene51278:CDS	30.0%
!	CTTTCTTAGCAGCTTTTTAT+TGG	+	chr6.3:77433138-77433157	MS.gene51278:intron	30.0%
!	TACGAAGTGGTACTTTATTT+GGG	+	chr6.3:77432400-77432419	MS.gene51278:intron	30.0%
!	TAGCAGCTTTTTATTGGTAA+TGG	+	chr6.3:77433144-77433163	MS.gene51278:intron	30.0%
!	TGTTGAAACCATCATTTTCT+TGG	+	chr6.3:77431275-77431294	MS.gene51278:CDS	30.0%
!	TTTAGCTTCCAAGAAAATGA+TGG	-	chr6.3:77431286-77431305	None:intergenic	30.0%
!!	AAAGAACTTGTTAAAGTGCA+AGG	+	chr6.3:77431385-77431404	MS.gene51278:CDS	30.0%
!!	ATTTGACTTGCAAAATGAAG+AGG	-	chr6.3:77431427-77431446	None:intergenic	30.0%
	AAACGTCATACTATCTAGGA+CGG	+	chr6.3:77432350-77432369	MS.gene51278:intron	35.0%
	ACACACTTTGTAAATGACTC+TGG	+	chr6.3:77431794-77431813	MS.gene51278:intron	35.0%
	AGCATTAATAAGTGAACCAC+AGG	+	chr6.3:77431681-77431700	MS.gene51278:CDS	35.0%
	ATAATTTCTATGGGTCGCAT+TGG	+	chr6.3:77432746-77432765	MS.gene51278:CDS	35.0%
	CTCAAAACAAATTGCAAGAG+AGG	+	chr6.3:77431586-77431605	MS.gene51278:CDS	35.0%
	CTGGAACTGATCATTCTTAA+CGG	-	chr6.3:77431542-77431561	None:intergenic	35.0%
	GTCAAAACGTCATACTATCT+AGG	+	chr6.3:77432346-77432365	MS.gene51278:intron	35.0%
	TAATCTAATGTCATTGCACG+AGG	-	chr6.3:77431710-77431729	None:intergenic	35.0%
	TCTCACAGTCAAGAATTCAA+TGG	-	chr6.3:77431497-77431516	None:intergenic	35.0%
	TCTTGGAAGCTAAATGTTGA+AGG	+	chr6.3:77431292-77431311	MS.gene51278:CDS	35.0%
	TGCAAAGGAGTTTCAACAAA+TGG	-	chr6.3:77431208-77431227	None:intergenic	35.0%
	TGCTAAGAAAGATGGATGTA+GGG	-	chr6.3:77433129-77433148	None:intergenic	35.0%
!	ATCCATCTTGCTATGCAAAA+CGG	+	chr6.3:77431325-77431344	MS.gene51278:CDS	35.0%
!	GACATACAATTTAAGACGGA+GGG	-	chr6.3:77432105-77432124	None:intergenic	35.0%
!	GTCAAGAATTCAATGGATTC+TGG	-	chr6.3:77431490-77431509	None:intergenic	35.0%
!	TTTTGCAAGTCAAATTGGTG+AGG	+	chr6.3:77431432-77431451	MS.gene51278:CDS	35.0%
!	TTTTGCATAGCAAGATGGAT+GGG	-	chr6.3:77431325-77431344	None:intergenic	35.0%
	AAAGTGGTCTGCAATCCATT+TGG	-	chr6.3:77431849-77431868	None:intergenic	40.0%
	CGGTTTACTTTATTGGGCTA+CGG	+	chr6.3:77433174-77433193	MS.gene51278:CDS	40.0%
	CGTTAAGAATGATCAGTTCC+AGG	+	chr6.3:77431540-77431559	MS.gene51278:CDS	40.0%
	CTGCTAAGAAAGATGGATGT+AGG	-	chr6.3:77433130-77433149	None:intergenic	40.0%
	CTTAGTCTATCTGCAAGTGT+GGG	-	chr6.3:77432692-77432711	None:intergenic	40.0%
	GCAAAACGGTCAAACAATGA+TGG	+	chr6.3:77431339-77431358	MS.gene51278:CDS	40.0%
	GCTAAGAAAGATGGATGTAG+GGG	-	chr6.3:77433128-77433147	None:intergenic	40.0%
	GTTAAAGTGCAAGGAAGAGA+AGG	+	chr6.3:77431394-77431413	MS.gene51278:CDS	40.0%
	TCTTAGTCTATCTGCAAGTG+TGG	-	chr6.3:77432693-77432712	None:intergenic	40.0%
	TTTACTTTATTGGGCTACGG+TGG	+	chr6.3:77433177-77433196	MS.gene51278:CDS	40.0%
	TTTGCATAGCAAGATGGATG+GGG	-	chr6.3:77431324-77431343	None:intergenic	40.0%
!	ATAGTTTGTCTAACCCCAAC+AGG	+	chr6.3:77433025-77433044	MS.gene51278:intron	40.0%
!	CGACATACAATTTAAGACGG+AGG	-	chr6.3:77432106-77432125	None:intergenic	40.0%
!	GTTTTGCATAGCAAGATGGA+TGG	-	chr6.3:77431326-77431345	None:intergenic	40.0%
!	TAGTTTGTCTAACCCCAACA+GGG	+	chr6.3:77433026-77433045	MS.gene51278:intron	40.0%
!!	CCAACCAAGAAGTACTTGAA+GGG	-	chr6.3:77431566-77431585	None:intergenic	40.0%
	CCCAGAAAATGTTGGGAGTT+CGG	+	chr6.3:77432931-77432950	MS.gene51278:CDS	45.0%
	CCCTTCAAGTACTTCTTGGT+TGG	+	chr6.3:77431563-77431582	MS.gene51278:CDS	45.0%
	CTAAATCAGAAGGATGAGGC+AGG	+	chr6.3:77431634-77431653	MS.gene51278:CDS	45.0%
	CTAACCCCAACAGGGATAAT+AGG	+	chr6.3:77433034-77433053	MS.gene51278:intron	45.0%
	CTGAAAGCTGCAGCTGAATT+AGG	+	chr6.3:77431115-77431134	MS.gene51278:CDS	45.0%
	TAGCCTGATAAACTCCACCA+GGG	-	chr6.3:77432859-77432878	None:intergenic	45.0%
	TAGTGGAGCAACGTAACACT+TGG	+	chr6.3:77432780-77432799	MS.gene51278:CDS	45.0%
	TTAGCCTGATAAACTCCACC+AGG	-	chr6.3:77432860-77432879	None:intergenic	45.0%
	TTTGCACATCGCTGCATCTA+GGG	+	chr6.3:77431222-77431241	MS.gene51278:CDS	45.0%
!	ACCGAACTCCCAACATTTTC+TGG	-	chr6.3:77432935-77432954	None:intergenic	45.0%
!	CCGAACTCCCAACATTTTCT+GGG	-	chr6.3:77432934-77432953	None:intergenic	45.0%
!	CGAACTCCCAACATTTTCTG+GGG	-	chr6.3:77432933-77432952	None:intergenic	45.0%
!	GACCGTTTTGCATAGCAAGA+TGG	-	chr6.3:77431330-77431349	None:intergenic	45.0%
!	GTATTAGTGACTTGTGAGGC+AGG	-	chr6.3:77432668-77432687	None:intergenic	45.0%
!	GTCATACTATCTAGGACGGA+GGG	+	chr6.3:77432354-77432373	MS.gene51278:intron	45.0%
!!	GCCAACCAAGAAGTACTTGA+AGG	-	chr6.3:77431567-77431586	None:intergenic	45.0%
!!	GGGAGTATTAGTGACTTGTG+AGG	-	chr6.3:77432672-77432691	None:intergenic	45.0%
	ACCCCAACAGGGATAATAGG+CGG	+	chr6.3:77433037-77433056	MS.gene51278:intron	50.0%
	ACCGCCTATTATCCCTGTTG+GGG	-	chr6.3:77433041-77433060	None:intergenic	50.0%
	AGACCGCCTATTATCCCTGT+TGG	-	chr6.3:77433043-77433062	None:intergenic	50.0%
	AGCCTGATAAACTCCACCAG+GGG	-	chr6.3:77432858-77432877	None:intergenic	50.0%
	CAGGCCCTTCAAGTACTTCT+TGG	+	chr6.3:77431559-77431578	MS.gene51278:CDS	50.0%
	CTAGATGCAGCGATGTGCAA+AGG	-	chr6.3:77431223-77431242	None:intergenic	50.0%
	CTTTGCACATCGCTGCATCT+AGG	+	chr6.3:77431221-77431240	MS.gene51278:CDS	50.0%
	GACCGCCTATTATCCCTGTT+GGG	-	chr6.3:77433042-77433061	None:intergenic	50.0%
	GGGGCTCACGATTGATTGAT+AGG	-	chr6.3:77432837-77432856	None:intergenic	50.0%
	GGTGGCATAGACTCGATTGT+TGG	+	chr6.3:77432526-77432545	MS.gene51278:intron	50.0%
	TCATTGCACGAGGTTACCTG+TGG	-	chr6.3:77431700-77431719	None:intergenic	50.0%
	TTGCACATCGCTGCATCTAG+GGG	+	chr6.3:77431223-77431242	MS.gene51278:CDS	50.0%
!	CAAGAGAGGTGCAAAAGAGC+TGG	+	chr6.3:77431600-77431619	MS.gene51278:CDS	50.0%
!	CGTCATACTATCTAGGACGG+AGG	+	chr6.3:77432353-77432372	MS.gene51278:intron	50.0%
!!	CAAGAAGTACTTGAAGGGCC+TGG	-	chr6.3:77431561-77431580	None:intergenic	50.0%
	CCTGATAAACTCCACCAGGG+GGG	-	chr6.3:77432856-77432875	None:intergenic	55.0%
	GCCTGATAAACTCCACCAGG+GGG	-	chr6.3:77432857-77432876	None:intergenic	55.0%
	CAATCAATCGTGAGCCCCCC+TGG	+	chr6.3:77432839-77432858	MS.gene51278:CDS	60.0%
	CCCCCCTGGTGGAGTTTATC+AGG	+	chr6.3:77432853-77432872	MS.gene51278:CDS	60.0%
	TCAATCGTGAGCCCCCCTGG+TGG	+	chr6.3:77432842-77432861	MS.gene51278:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	77431091	77433209	77431091	ID=MS.gene51278
chr6.3	mRNA	77431091	77433209	77431091	ID=MS.gene51278.t1;Parent=MS.gene51278
chr6.3	exon	77431091	77431702	77431091	ID=MS.gene51278.t1.exon1;Parent=MS.gene51278.t1
chr6.3	CDS	77431091	77431702	77431091	ID=cds.MS.gene51278.t1;Parent=MS.gene51278.t1
chr6.3	exon	77432572	77432952	77432572	ID=MS.gene51278.t1.exon2;Parent=MS.gene51278.t1
chr6.3	CDS	77432572	77432952	77432572	ID=cds.MS.gene51278.t1;Parent=MS.gene51278.t1
chr6.3	exon	77433150	77433209	77433150	ID=MS.gene51278.t1.exon3;Parent=MS.gene51278.t1
chr6.3	CDS	77433150	77433209	77433150	ID=cds.MS.gene51278.t1;Parent=MS.gene51278.t1

Gene Sequence

>MS.gene51278

ATGAACACATATAATGGTGAGCAGCTGAAAGCTGCAGCTGAATTAGGTGATATAAATCTTCTCTACACTGTAATTCGAAATGATCCATATATTTTTGAGCATATAGATTTGATACCATTTGTTGAAACTCCTTTGCACATCGCTGCATCTAGGGGTCATCTCCAATTTGCCACTGAAATTATGATGTTGAAACCATCATTTTCTTGGAAGCTAAATGTTGAAGGATTCTGCCCCATCCATCTTGCTATGCAAAACGGTCAAACAATGATGGTATTTCGCTTTGTTAACATCAATAAAGAACTTGTTAAAGTGCAAGGAAGAGAAGGCATAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAGGTTGATCTTTTAGCAAGCTTTCTCTTTGCTTGTCCAGAATCCATTGAATTCTTGACTGTGAGACAAGAGACTGCACTGCATATTGCCGTTAAGAATGATCAGTTCCAGGCCCTTCAAGTACTTCTTGGTTGGCTCAAAACAAATTGCAAGAGAGGTGCAAAAGAGCTGGAAAAGAAAATACTAAATCAGAAGGATGAGGCAGGCAATACTATTTTGCACATTTCAGCAGCATTAATAAGTGAACCACAGGTAACCTCGTGCAATGACATTAGATTACATGTCTTCTTTATATATTTCTTTTGTTTTCCCCTCAATTAGAAAATAACACATCAAGGAAAAAACACACTTTGTAAATGACTCTGGTGTTTTTTATTATTTTTAGTCACTAAATTCCAAATGGATTGCAGACCACTTTAAAGTAAAGAATTAGCATGCAAAGAAAAGCACTAGTTTTTTTTTTTTTTTTCTTTTGCATAAAGATGAAAAAAAGTTGTATATATGTTTTGTAGTAATATAATTCATTTTGGCGTCTTTAAAAAAAGAATGTAATATGTTAATAAAAAATTTCTTATTTAGTCATTATCATAAATCTATAGCTTAGTAAAATTTACTTGAGTTTGACATTAATTAATATTATAATAAAATACTCCCTCCGTCTTAAATTGTATGTCGCTTTAGAAAAAAAAAATTCCAAATTATATGTCGTTTTACAATACCAATGAAACATTAATGTTATTTTTCCTATTATATCCTTAATTATTCATTACTCTCTCTTCTTTTAATTCTTTCATTTATTTTTCTCATATCATTTATTCAGGACAATTTTGTAAAACAACTCATAATATCTCTTTCCCACATAAAATTAATTACATTTCTTAATACGTGTGAAATGGTCAAAACGTCATACTATCTAGGACGGAGGGAGTAACTAATAGTACATTGAAAATACGAAGTGGTACTTTATTTGGGATATTTTTCTCTTGCAAATGTGTGACATTTAATATAGGATGGAGGCATTAATTGTAACATGAACGATCTGTAATAAATGGTATTTTTTTATTGATGATTACTTGGTGGCATAGACTCGATTGTTGGTAAAGACTTGTATAAATTTGAAGGCAAAAAACTTGGAGAACAAAACAGCATTAGACATTGCAACTACAGCAGCTACAGCAGAGATCAAGAAAATATTGTTAAGTGTTGAAGCAAAACCTGCCTCACAAGTCACTAATACTCCCACACTTGCAGATAGACTAAGATCAAGATCAAACATCACGATACAAGAAAAAGTGATAATTTCTATGGGTCGCATTGGAAGAAATATATTAGTGGAGCAACGTAACACTTGGTTGATAGTTGCGACTCTTGTTGCGACTGCAACCTATCAATCAATCGTGAGCCCCCCTGGTGGAGTTTATCAGGCTAATGCTAGTGACAATACTGTGAACATCACTTCCTCAAATTCTACTATTATTACCCCAGAAAATGTTGGGAGTTCGGTATTGTTATCAACCGCATTCCTTCTTTTTTCAATTCCGAATATGATTTCCTTTTTATTATCAATTCTAGTAATAGTTTGTCTAACCCCAACAGGGATAATAGGCGGTCTATTATTGTCCATTCCAGTAAATTTGTTTGTATATTGCTATATAATTTCTATGGTTATTATTGCCCCTACATCCATCTTTCTTAGCAGCTTTTTATTGGTAATGGTATTTGTCGGTTTACTTTATTGGGCTACGGTGGAGTACTCTAG

Protein sequence

>MS.gene51278.t1

MNTYNGEQLKAAAELGDINLLYTVIRNDPYIFEHIDLIPFVETPLHIAASRGHLQFATEIMMLKPSFSWKLNVEGFCPIHLAMQNGQTMMVFRFVNINKELVKVQGREGITPLHFASQIGEVDLLASFLFACPESIEFLTVRQETALHIAVKNDQFQALQVLLGWLKTNCKRGAKELEKKILNQKDEAGNTILHISAALISEPQAKNLENKTALDIATTAATAEIKKILLSVEAKPASQVTNTPTLADRLRSRSNITIQEKVIISMGRIGRNILVEQRNTWLIVATLVATATYQSIVSPPGGVYQANASDNTVNITSSNSTIITPENVGSSLFIGNGICRFTLLGYGGVL