AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037950.t1 MTR_8g072510 75.731 342 81 2 1 341 1 341 0.0 519
MS.gene037950.t1 MTR_7g021090 71.554 341 91 1 1 341 1 335 2.68e-174 491
MS.gene037950.t1 MTR_8g039620 70.588 340 96 2 5 341 10 348 1.01e-169 480
MS.gene037950.t1 MTR_8g062410 71.720 343 88 3 1 341 1 336 1.35e-163 465
MS.gene037950.t1 MTR_3g016210 62.500 384 119 6 1 363 1 380 1.38e-159 455
MS.gene037950.t1 MTR_1g059930 65.407 344 116 1 1 341 1 344 7.19e-157 447
MS.gene037950.t1 MTR_8g068990 65.192 339 100 4 8 343 11 334 4.36e-151 434
MS.gene037950.t1 MTR_7g451420 67.628 312 101 0 1 312 1 312 1.01e-147 420
MS.gene037950.t1 MTR_8g073260 62.209 344 121 3 1 340 1 339 7.66e-146 420
MS.gene037950.t1 MTR_8g069880 63.905 338 119 3 4 340 2 337 2.06e-142 412
MS.gene037950.t1 MTR_8g040930 66.212 293 95 2 51 340 1 292 1.14e-130 379
MS.gene037950.t1 MTR_8g041240 66.212 293 95 2 51 340 1 292 1.14e-130 379
MS.gene037950.t1 MTR_8g066670 60.571 350 135 3 1 349 1067 1414 2.06e-129 404
MS.gene037950.t1 MTR_8g467780 55.942 345 142 2 7 341 9 353 2.07e-124 366
MS.gene037950.t1 MTR_3g105650 49.677 310 148 2 7 309 3 311 2.65e-101 306
MS.gene037950.t1 MTR_8g073275 44.972 358 121 7 51 342 1 348 4.81e-84 263
MS.gene037950.t1 MTR_1g069110 26.935 323 204 7 1 312 5 306 7.06e-29 116
MS.gene037950.t1 MTR_7g099580 25.602 332 190 7 6 331 9 289 1.04e-28 114
MS.gene037950.t1 MTR_1g115575 27.707 314 182 8 44 332 169 462 3.63e-22 98.2
MS.gene037950.t1 MTR_7g099570 30.198 202 127 3 1 197 1 193 8.49e-22 97.1
MS.gene037950.t1 MTR_2g101320 30.000 220 136 4 37 248 134 343 3.94e-21 95.1
MS.gene037950.t1 MTR_7g117620 26.481 287 177 4 44 308 119 393 1.06e-20 94.0
MS.gene037950.t1 MTR_2g096190 25.694 288 178 6 45 308 105 380 5.87e-19 88.6
MS.gene037950.t1 MTR_4g062100 26.736 288 175 6 45 308 109 384 5.07e-18 85.9
MS.gene037950.t1 MTR_2g101310 27.907 215 137 3 40 246 137 341 1.41e-15 78.6
MS.gene037950.t1 MTR_2g101310 27.907 215 137 3 40 246 137 341 1.57e-15 78.2
MS.gene037950.t1 MTR_1g032100 26.190 294 170 9 45 308 95 371 2.76e-15 77.4
MS.gene037950.t1 MTR_7g100390 24.848 330 212 7 2 308 46 362 7.11e-15 76.3
MS.gene037950.t1 MTR_2g033050 28.780 205 127 5 60 260 217 406 8.86e-15 75.5
MS.gene037950.t1 MTR_5g085830 23.611 288 176 9 59 308 293 574 1.52e-14 75.5
MS.gene037950.t1 MTR_5g085500 34.351 131 72 4 105 230 35 156 1.92e-14 74.7
MS.gene037950.t1 MTR_5g085810 23.183 289 176 8 60 308 320 602 4.67e-13 70.9
MS.gene037950.t1 MTR_7g100430 24.620 329 188 12 42 320 124 442 1.69e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037950.t1 AT4G10720 41.975 324 180 2 8 323 4 327 4.72e-83 259
MS.gene037950.t1 AT4G10720 41.975 324 180 2 8 323 4 327 1.44e-82 258
MS.gene037950.t1 AT5G15500 40.111 359 194 7 9 358 6 352 2.22e-77 245
MS.gene037950.t1 AT1G14480 38.532 327 191 2 8 324 4 330 5.39e-75 239
MS.gene037950.t1 AT1G14500 37.107 318 191 2 8 316 4 321 1.69e-74 237
MS.gene037950.t1 AT5G54620 41.368 307 173 2 7 306 3 309 4.38e-72 231
MS.gene037950.t1 AT5G54610 36.964 303 182 3 8 303 4 304 1.90e-63 208
MS.gene037950.t1 AT1G14480 36.593 317 168 5 8 324 4 287 4.24e-57 191
MS.gene037950.t1 AT5G15500 35.271 258 146 7 110 358 1 246 4.76e-36 134
MS.gene037950.t1 AT5G51160 28.793 323 199 5 63 361 35 350 8.68e-31 122
MS.gene037950.t1 AT1G03670 30.000 240 129 6 88 315 266 478 1.24e-19 90.9
MS.gene037950.t1 AT3G09550 26.176 340 194 10 12 321 150 462 1.14e-18 87.8
MS.gene037950.t1 AT3G09550 26.176 340 194 10 12 321 150 462 1.14e-18 87.8
MS.gene037950.t1 AT3G09550 26.176 340 194 10 12 321 157 469 1.20e-18 87.8
MS.gene037950.t1 AT1G34050 25.564 266 164 5 65 312 174 423 1.71e-18 87.4
MS.gene037950.t1 AT4G03500 25.321 312 162 9 43 309 217 502 4.51e-18 86.3
MS.gene037950.t1 AT4G03500 25.321 312 162 9 43 309 194 479 5.06e-18 85.9
MS.gene037950.t1 AT4G03500 25.321 312 162 9 43 309 194 479 5.06e-18 85.9
MS.gene037950.t1 AT3G12360 25.828 302 182 7 44 322 167 449 1.62e-17 84.3
MS.gene037950.t1 AT3G12360 25.828 302 182 7 44 322 155 437 1.68e-17 84.3
MS.gene037950.t1 AT1G10340 29.289 239 123 6 109 312 205 432 5.52e-17 82.8
MS.gene037950.t1 AT1G10340 29.289 239 123 6 109 312 201 428 5.74e-17 82.8
MS.gene037950.t1 AT5G54700 30.222 225 117 7 95 314 17 206 1.05e-16 80.9
MS.gene037950.t1 AT1G05640 25.879 313 189 7 24 308 168 465 1.15e-16 82.0
MS.gene037950.t1 AT4G03460 28.436 211 136 3 100 309 290 486 1.27e-16 81.6
MS.gene037950.t1 AT4G03460 28.436 211 136 3 100 309 258 454 1.47e-16 81.6
MS.gene037950.t1 AT1G07710 24.507 355 232 7 2 333 63 404 6.28e-16 79.3
MS.gene037950.t1 AT1G07710 24.507 355 232 7 2 333 63 404 6.28e-16 79.3
MS.gene037950.t1 AT2G31820 24.606 317 188 7 24 308 204 501 2.11e-15 78.2
MS.gene037950.t1 AT4G03490 26.899 316 157 10 9 309 211 467 1.52e-14 75.5
MS.gene037950.t1 AT4G03490 26.899 316 157 10 9 309 211 467 1.67e-14 75.5
MS.gene037950.t1 AT4G03490 26.899 316 157 10 9 309 201 457 1.74e-14 75.1
MS.gene037950.t1 AT5G54710 27.801 241 137 7 98 312 222 451 1.88e-14 75.1
MS.gene037950.t1 AT5G54710 27.801 241 137 7 98 312 267 496 1.89e-14 75.1
MS.gene037950.t1 AT4G03450 27.184 206 135 4 108 309 290 484 2.37e-14 74.7
MS.gene037950.t1 AT4G03450 27.184 206 135 4 108 309 290 484 2.57e-14 74.7
MS.gene037950.t1 AT5G60070 24.832 298 201 8 12 308 115 390 9.41e-14 72.8
MS.gene037950.t1 AT5G02620 24.055 291 182 6 45 308 95 373 2.09e-13 71.6
MS.gene037950.t1 AT5G02620 24.055 291 182 6 45 308 95 373 2.09e-13 71.6
MS.gene037950.t1 AT5G02620 24.055 291 182 6 45 308 95 373 2.09e-13 71.6
MS.gene037950.t1 AT5G50140 28.902 173 98 4 40 197 26 188 4.04e-12 67.8
MS.gene037950.t1 AT4G14390 24.242 330 198 9 2 310 226 524 3.36e-11 65.1
MS.gene037950.t1 AT4G14390 24.316 329 197 9 2 309 245 542 4.03e-11 65.1
MS.gene037950.t1 AT4G03480 23.944 355 187 13 9 348 360 646 4.54e-11 64.7
MS.gene037950.t1 AT4G03480 23.944 355 187 13 9 348 357 643 4.61e-11 64.7
MS.gene037950.t1 AT5G02620 22.293 314 182 6 45 308 95 396 5.44e-11 64.3
MS.gene037950.t1 AT5G02620 22.293 314 182 6 45 308 95 396 5.44e-11 64.3
MS.gene037950.t1 AT4G14390 24.242 330 197 9 2 309 245 543 5.61e-11 64.3

Find 67 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTAATACTGGTATAAATT+TGG 0.110163 1.1:+32761184 MS.gene037950:CDS
AAAGACCTTGTTAGAATTAA+AGG 0.120242 1.1:+32760695 MS.gene037950:CDS
AATCTCACAGTCAAGTATTT+AGG 0.160244 1.1:-32760806 None:intergenic
GTTAATACTGGTATAAATTT+GGG 0.229623 1.1:+32761185 MS.gene037950:CDS
CTTCTATTGTTGGTTAATAC+TGG 0.279992 1.1:+32761173 MS.gene037950:CDS
TGAGGATGATCCATTCATTC+TGG 0.311643 1.1:+32760475 MS.gene037950:CDS
AATTCTACTATTTCTATTCC+AGG 0.326114 1.1:+32761539 MS.gene037950:CDS
ATGGATGGGGCTGAATCCTT+GGG 0.350688 1.1:-32760618 None:intergenic
ATTGATTTCCCAGCATTTCC+TGG 0.350750 1.1:-32761557 None:intergenic
ATCTCACAGTCAAGTATTTA+GGG 0.367858 1.1:-32760805 None:intergenic
CGGTCTAGTGGTTTCTCCAA+TGG 0.385999 1.1:+32761682 MS.gene037950:CDS
GTTACATATTGCTGCATCAA+TGG 0.397056 1.1:+32760532 MS.gene037950:CDS
TAGTGCTGAAATATGCAAAA+TGG 0.398549 1.1:-32760972 None:intergenic
GGTCTAGTGGTTTCTCCAAT+GGG 0.398612 1.1:+32761683 MS.gene037950:CDS
GATGGATGGGGCTGAATCCT+TGG 0.401090 1.1:-32760619 None:intergenic
GCAGCTGAAAGCTGCAGCTC+AGG 0.411223 1.1:+32760421 MS.gene037950:CDS
ATATTATTTATGATACCATA+TGG 0.414346 1.1:+32761650 MS.gene037950:CDS
TGTTGCCTGCTTTATCCCTC+TGG 0.417230 1.1:-32760949 None:intergenic
CCCTTCAAGTACTTGTTAGC+TGG 0.417708 1.1:+32760873 MS.gene037950:CDS
ATTTCTATTCCAGGAAATGC+TGG 0.420585 1.1:+32761548 MS.gene037950:CDS
AGCACAGGCACTTCTATTGT+TGG 0.436257 1.1:+32761163 MS.gene037950:intron
AAGAAGTGGCGCTCAAAAGC+TGG 0.439868 1.1:+32760910 MS.gene037950:CDS
AATAGAAATAGTAGAATTTG+AGG 0.450496 1.1:-32761534 None:intergenic
TCTATATGCTCCAGAATGAA+TGG 0.459267 1.1:-32760485 None:intergenic
GTCAAGTATTTAGGGGAATC+CGG 0.471461 1.1:-32760797 None:intergenic
CTCTTCCTTTAATTCTAACA+AGG 0.482377 1.1:-32760700 None:intergenic
GCCAGCTAACAAGTACTTGA+AGG 0.489142 1.1:-32760874 None:intergenic
TAGTGGTTTCTCCAATGGGT+TGG 0.489191 1.1:+32761687 MS.gene037950:CDS
TTTAGCTTCCATGCAAATGA+AGG 0.491081 1.1:-32760593 None:intergenic
TGTAACGGAGTTTCAACAAA+TGG 0.492054 1.1:-32760515 None:intergenic
ATTTAAAACCTTCATTTGCA+TGG 0.492498 1.1:+32760585 MS.gene037950:CDS
GCAACTGCGATCTATCAATC+AGG 0.505224 1.1:+32761446 MS.gene037950:CDS
TTACATATTGCTGCATCAAT+GGG 0.508697 1.1:+32760533 MS.gene037950:CDS
TGTTAAGAATCAACAATATG+AGG 0.510561 1.1:+32760850 MS.gene037950:CDS
AAGAGTATATTATTAAGTGT+TGG 0.527914 1.1:+32761263 MS.gene037950:CDS
GTTAGAATTAAAGGAAGAGA+GGG 0.531611 1.1:+32760704 MS.gene037950:CDS
GGAATTTATCAGGTTAGTGC+CGG 0.544318 1.1:+32761485 MS.gene037950:CDS
TTTCTATTCCAGGAAATGCT+GGG 0.545527 1.1:+32761549 MS.gene037950:CDS
TCTCCTCTACGCAGTAATTG+AGG 0.549163 1.1:+32760457 MS.gene037950:CDS
CAGATGAGCAACGCAACACT+TGG 0.557483 1.1:+32761402 MS.gene037950:CDS
CTGAAAGCTGCAGCTCAGGA+AGG 0.558773 1.1:+32760425 MS.gene037950:CDS
TTAATACTGGTATAAATTTG+GGG 0.562939 1.1:+32761186 MS.gene037950:CDS
AGCACTAAGTAGTGAGCCCC+AGG 0.563584 1.1:+32760988 MS.gene037950:CDS
AAATCGAATATTAAACCAGA+GGG 0.576391 1.1:+32760934 MS.gene037950:CDS
TGTTAGAATTAAAGGAAGAG+AGG 0.578303 1.1:+32760703 MS.gene037950:CDS
GAATCAGCGACTTCTAAGCT+AGG 0.580948 1.1:-32761293 None:intergenic
CTCAAAAGAAATAAAAGAAG+TGG 0.590645 1.1:+32760896 MS.gene037950:CDS
CTAACCTGATAAATTCCACC+AGG 0.592230 1.1:-32761479 None:intergenic
GTTCCCACCATTGTCATCAC+CGG 0.608844 1.1:-32761504 None:intergenic
CCAGCTAACAAGTACTTGAA+GGG 0.613435 1.1:-32760873 None:intergenic
GCACACGTGCACAAAGACTC+AGG 0.617233 1.1:+32761318 MS.gene037950:CDS
TTAAACCAGAGGGATAAAGC+AGG 0.617620 1.1:+32760944 MS.gene037950:CDS
CTAGCGGTAAACCAACCCAT+TGG 0.623589 1.1:-32761698 None:intergenic
TGGATGGGGCTGAATCCTTG+GGG 0.639273 1.1:-32760617 None:intergenic
ATTGATGCAGCAATATGTAA+CGG 0.647480 1.1:-32760530 None:intergenic
TAATACTGGTATAAATTTGG+GGG 0.648877 1.1:+32761187 MS.gene037950:CDS
TGTACTTGCAATGTCTAATG+CGG 0.653856 1.1:-32761231 None:intergenic
CATCCTCAATTACTGCGTAG+AGG 0.659584 1.1:-32760460 None:intergenic
GCATGGAAGCTAAATCCCCA+AGG 0.662124 1.1:+32760602 MS.gene037950:CDS
AAAATCGAATATTAAACCAG+AGG 0.667578 1.1:+32760933 MS.gene037950:CDS
GTTAGTGCCGGTGATGACAA+TGG 0.675983 1.1:+32761497 MS.gene037950:CDS
AACCTGATAAATTCCACCAG+GGG 0.693447 1.1:-32761477 None:intergenic
TAACCTGATAAATTCCACCA+GGG 0.695982 1.1:-32761478 None:intergenic
TCTCACAGTCAAGTATTTAG+GGG 0.703014 1.1:-32760804 None:intergenic
ACCTGATAAATTCCACCAGG+GGG 0.706697 1.1:-32761476 None:intergenic
GTGCCGGTGATGACAATGGT+GGG 0.709157 1.1:+32761501 MS.gene037950:CDS
AGTGCCGGTGATGACAATGG+TGG 0.761390 1.1:+32761500 MS.gene037950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAATTCATAATTTCAA+TGG - chr1.1:32760573-32760592 None:intergenic 10.0%
!! AAATTAAGAAATATGCAAAA+TGG - chr1.1:32761046-32761065 None:intergenic 15.0%
!! ATATTATTTATGATACCATA+TGG + chr1.1:32761650-32761669 MS.gene037950:CDS 15.0%
!! AATAGAAATAGTAGAATTTG+AGG - chr1.1:32761537-32761556 None:intergenic 20.0%
!! ATACCATATGGAAAAATATT+CGG + chr1.1:32761662-32761681 MS.gene037950:CDS 20.0%
!! CAACTTATAAATAAGATAAG+TGG + chr1.1:32761084-32761103 MS.gene037950:intron 20.0%
!! GTTAATACTGGTATAAATTT+GGG + chr1.1:32761185-32761204 MS.gene037950:CDS 20.0%
!! TTAATACTGGTATAAATTTG+GGG + chr1.1:32761186-32761205 MS.gene037950:CDS 20.0%
!!! AAGAGTATATTATTAAGTGT+TGG + chr1.1:32761263-32761282 MS.gene037950:CDS 20.0%
!!! AGAAAGACACTATATATTTT+TGG - chr1.1:32760661-32760680 None:intergenic 20.0%
! AAAATCGAATATTAAACCAG+AGG + chr1.1:32760933-32760952 MS.gene037950:CDS 25.0%
! AAAGACCTTGTTAGAATTAA+AGG + chr1.1:32760695-32760714 MS.gene037950:CDS 25.0%
! AAATCGAATATTAAACCAGA+GGG + chr1.1:32760934-32760953 MS.gene037950:CDS 25.0%
! CTCAAAAGAAATAAAAGAAG+TGG + chr1.1:32760896-32760915 MS.gene037950:CDS 25.0%
! GGTTAATACTGGTATAAATT+TGG + chr1.1:32761184-32761203 MS.gene037950:CDS 25.0%
! TAATACTGGTATAAATTTGG+GGG + chr1.1:32761187-32761206 MS.gene037950:CDS 25.0%
! TGTTAAGAATCAACAATATG+AGG + chr1.1:32760850-32760869 MS.gene037950:CDS 25.0%
!! ATTTAAAACCTTCATTTGCA+TGG + chr1.1:32760585-32760604 MS.gene037950:CDS 25.0%
!! TGACATATTATCTCTTTTTG+TGG - chr1.1:32761351-32761370 None:intergenic 25.0%
!!! AATTCTACTATTTCTATTCC+AGG + chr1.1:32761539-32761558 MS.gene037950:CDS 25.0%
AATCTCACAGTCAAGTATTT+AGG - chr1.1:32760809-32760828 None:intergenic 30.0%
ATCTCACAGTCAAGTATTTA+GGG - chr1.1:32760808-32760827 None:intergenic 30.0%
ATTGATGCAGCAATATGTAA+CGG - chr1.1:32760533-32760552 None:intergenic 30.0%
CGCTAAAATTGATACAGAAA+AGG - chr1.1:32761630-32761649 None:intergenic 30.0%
CTCTTCCTTTAATTCTAACA+AGG - chr1.1:32760703-32760722 None:intergenic 30.0%
GTTAGAATTAAAGGAAGAGA+GGG + chr1.1:32760704-32760723 MS.gene037950:CDS 30.0%
TGTTAGAATTAAAGGAAGAG+AGG + chr1.1:32760703-32760722 MS.gene037950:CDS 30.0%
TTACATATTGCTGCATCAAT+GGG + chr1.1:32760533-32760552 MS.gene037950:CDS 30.0%
! AGACCGAATATTTTTCCATA+TGG - chr1.1:32761668-32761687 None:intergenic 30.0%
! CTTCATTTTGCAAGTCAAAA+TGG + chr1.1:32760737-32760756 MS.gene037950:CDS 30.0%
! CTTCTATTGTTGGTTAATAC+TGG + chr1.1:32761173-32761192 MS.gene037950:CDS 30.0%
! TAGTGCTGAAATATGCAAAA+TGG - chr1.1:32760975-32760994 None:intergenic 30.0%
! TGAATTTCTCTCTTTTTGTC+CGG + chr1.1:32760778-32760797 MS.gene037950:CDS 30.0%
!!! TTTTGACTTGCAAAATGAAG+AGG - chr1.1:32760737-32760756 None:intergenic 30.0%
AGCTATTGAACAAGATTACC+TGG - chr1.1:32761009-32761028 None:intergenic 35.0%
ATTTCTATTCCAGGAAATGC+TGG + chr1.1:32761548-32761567 MS.gene037950:CDS 35.0%
CATTAATTTCTTCGTAGCAC+AGG + chr1.1:32761148-32761167 MS.gene037950:intron 35.0%
CTATTGAACAAGATTACCTG+GGG - chr1.1:32761007-32761026 None:intergenic 35.0%
GCTATTGAACAAGATTACCT+GGG - chr1.1:32761008-32761027 None:intergenic 35.0%
GTTACATATTGCTGCATCAA+TGG + chr1.1:32760532-32760551 MS.gene037950:CDS 35.0%
TAACCTGATAAATTCCACCA+GGG - chr1.1:32761481-32761500 None:intergenic 35.0%
TCTATATGCTCCAGAATGAA+TGG - chr1.1:32760488-32760507 None:intergenic 35.0%
TCTCACAGTCAAGTATTTAG+GGG - chr1.1:32760807-32760826 None:intergenic 35.0%
TGGAAAAATATTCGGTCTAG+TGG + chr1.1:32761670-32761689 MS.gene037950:CDS 35.0%
TGTACTTGCAATGTCTAATG+CGG - chr1.1:32761234-32761253 None:intergenic 35.0%
TTTCTATTCCAGGAAATGCT+GGG + chr1.1:32761549-32761568 MS.gene037950:CDS 35.0%
! TGTAACGGAGTTTCAACAAA+TGG - chr1.1:32760518-32760537 None:intergenic 35.0%
! TTTAGCTTCCATGCAAATGA+AGG - chr1.1:32760596-32760615 None:intergenic 35.0%
! TTTTGCAAGTCAAAATGGTG+AGG + chr1.1:32760742-32760761 MS.gene037950:CDS 35.0%
! TTTTTCATAGCGAGATGGAT+GGG - chr1.1:32760635-32760654 None:intergenic 35.0%
AAATTTGGGGGCAAAGAACA+AGG + chr1.1:32761199-32761218 MS.gene037950:CDS 40.0%
AACCTGATAAATTCCACCAG+GGG - chr1.1:32761480-32761499 None:intergenic 40.0%
CCAGCTAACAAGTACTTGAA+GGG - chr1.1:32760876-32760895 None:intergenic 40.0%
CTAACCTGATAAATTCCACC+AGG - chr1.1:32761482-32761501 None:intergenic 40.0%
GGAATTTATCAGGTTAGTGC+CGG + chr1.1:32761485-32761504 MS.gene037950:CDS 40.0%
GTCAAGTATTTAGGGGAATC+CGG - chr1.1:32760800-32760819 None:intergenic 40.0%
TGAGGATGATCCATTCATTC+TGG + chr1.1:32760475-32760494 MS.gene037950:CDS 40.0%
TTAAACCAGAGGGATAAAGC+AGG + chr1.1:32760944-32760963 MS.gene037950:CDS 40.0%
! ATTGATTTCCCAGCATTTCC+TGG - chr1.1:32761560-32761579 None:intergenic 40.0%
! GTTTTTCATAGCGAGATGGA+TGG - chr1.1:32760636-32760655 None:intergenic 40.0%
! TTTTCATAGCGAGATGGATG+GGG - chr1.1:32760634-32760653 None:intergenic 40.0%
ACCTGATAAATTCCACCAGG+GGG - chr1.1:32761479-32761498 None:intergenic 45.0%
AGCACAGGCACTTCTATTGT+TGG + chr1.1:32761163-32761182 MS.gene037950:intron 45.0%
CATCCTCAATTACTGCGTAG+AGG - chr1.1:32760463-32760482 None:intergenic 45.0%
GAATCAGCGACTTCTAAGCT+AGG - chr1.1:32761296-32761315 None:intergenic 45.0%
GCAACTGCGATCTATCAATC+AGG + chr1.1:32761446-32761465 MS.gene037950:CDS 45.0%
GCCAGCTAACAAGTACTTGA+AGG - chr1.1:32760877-32760896 None:intergenic 45.0%
GCTGGGAAATCAATCTTGTC+AGG + chr1.1:32761566-32761585 MS.gene037950:intron 45.0%
GGTCTAGTGGTTTCTCCAAT+GGG + chr1.1:32761683-32761702 MS.gene037950:CDS 45.0%
TAGTGGTTTCTCCAATGGGT+TGG + chr1.1:32761687-32761706 MS.gene037950:CDS 45.0%
TCTCCTCTACGCAGTAATTG+AGG + chr1.1:32760457-32760476 MS.gene037950:CDS 45.0%
! CCCTTCAAGTACTTGTTAGC+TGG + chr1.1:32760873-32760892 MS.gene037950:CDS 45.0%
!!! GGTCGTTTTTCATAGCGAGA+TGG - chr1.1:32760640-32760659 None:intergenic 45.0%
!!! ATTTCTTAATTTTTTTTTTT+TGG + chr1.1:32761054-32761073 MS.gene037950:intron 5.0%
AAGAAGTGGCGCTCAAAAGC+TGG + chr1.1:32760910-32760929 MS.gene037950:CDS 50.0%
ATGGATGGGGCTGAATCCTT+GGG - chr1.1:32760621-32760640 None:intergenic 50.0%
CAGATGAGCAACGCAACACT+TGG + chr1.1:32761402-32761421 MS.gene037950:CDS 50.0%
CGGTCTAGTGGTTTCTCCAA+TGG + chr1.1:32761682-32761701 MS.gene037950:CDS 50.0%
CTAGCGGTAAACCAACCCAT+TGG - chr1.1:32761701-32761720 None:intergenic 50.0%
GCATGGAAGCTAAATCCCCA+AGG + chr1.1:32760602-32760621 MS.gene037950:CDS 50.0%
GTTCCCACCATTGTCATCAC+CGG - chr1.1:32761507-32761526 None:intergenic 50.0%
TCCCCCTGGTGGAATTTATC+AGG + chr1.1:32761475-32761494 MS.gene037950:CDS 50.0%
TGTTGCCTGCTTTATCCCTC+TGG - chr1.1:32760952-32760971 None:intergenic 50.0%
!! GTTAGTGCCGGTGATGACAA+TGG + chr1.1:32761497-32761516 MS.gene037950:CDS 50.0%
AGCACTAAGTAGTGAGCCCC+AGG + chr1.1:32760988-32761007 MS.gene037950:CDS 55.0%
CAATCAGGATTGAGTCCCCC+TGG + chr1.1:32761461-32761480 MS.gene037950:CDS 55.0%
CTGAAAGCTGCAGCTCAGGA+AGG + chr1.1:32760425-32760444 MS.gene037950:CDS 55.0%
GATGGATGGGGCTGAATCCT+TGG - chr1.1:32760622-32760641 None:intergenic 55.0%
GCACACGTGCACAAAGACTC+AGG + chr1.1:32761318-32761337 MS.gene037950:CDS 55.0%
TGGATGGGGCTGAATCCTTG+GGG - chr1.1:32760620-32760639 None:intergenic 55.0%
! GTGCCGGTGATGACAATGGT+GGG + chr1.1:32761501-32761520 MS.gene037950:CDS 55.0%
!! AGTGCCGGTGATGACAATGG+TGG + chr1.1:32761500-32761519 MS.gene037950:CDS 55.0%
GCAGCTGAAAGCTGCAGCTC+AGG + chr1.1:32760421-32760440 MS.gene037950:CDS 60.0%
TCAGGATTGAGTCCCCCTGG+TGG + chr1.1:32761464-32761483 MS.gene037950:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 32760401 32761720 32760401 ID=MS.gene037950
chr1.1 mRNA 32760401 32761720 32760401 ID=MS.gene037950.t1;Parent=MS.gene037950
chr1.1 exon 32760401 32761009 32760401 ID=MS.gene037950.t1.exon1;Parent=MS.gene037950.t1
chr1.1 CDS 32760401 32761009 32760401 ID=cds.MS.gene037950.t1;Parent=MS.gene037950.t1
chr1.1 exon 32761170 32761582 32761170 ID=MS.gene037950.t1.exon2;Parent=MS.gene037950.t1
chr1.1 CDS 32761170 32761582 32761170 ID=cds.MS.gene037950.t1;Parent=MS.gene037950.t1
chr1.1 exon 32761648 32761720 32761648 ID=MS.gene037950.t1.exon3;Parent=MS.gene037950.t1
chr1.1 CDS 32761648 32761720 32761648 ID=cds.MS.gene037950.t1;Parent=MS.gene037950.t1
Gene Sequence

>MS.gene037950

ATGAACACAAGTAATCTAGAGCAGCTGAAAGCTGCAGCTCAGGAAGGTGATATAGATCTCCTCTACGCAGTAATTGAGGATGATCCATTCATTCTGGAGCATATAGATTTGATACCATTTGTTGAAACTCCGTTACATATTGCTGCATCAATGGGTCATATCTCGTTTACCATTGAAATTATGAATTTAAAACCTTCATTTGCATGGAAGCTAAATCCCCAAGGATTCAGCCCCATCCATCTCGCTATGAAAAACGACCAAAAATATATAGTGTCTTTCTTTGTGCACAACAATAAAGACCTTGTTAGAATTAAAGGAAGAGAGGGCTTAACTCCTCTTCATTTTGCAAGTCAAAATGGTGAGGTTGAACTTTTAGCTGAATTTCTCTCTTTTTGTCCGGATTCCCCTAAATACTTGACTGTGAGATTCGAGACTGCACTGCATATTGCTGTTAAGAATCAACAATATGAGGCCCTTCAAGTACTTGTTAGCTGGCTCAAAAGAAATAAAAGAAGTGGCGCTCAAAAGCTGGAAAATCGAATATTAAACCAGAGGGATAAAGCAGGCAACACCATTTTGCATATTTCAGCACTAAGTAGTGAGCCCCAGGTAATCTTGTTCAATAGCTAAAATCATATGTCTCCATTTTGCATATTTCTTAATTTTTTTTTTTTGGTGCTTTACAACTTATAAATAAGATAAGTGGCTTAGTTGCTAACATGAATGATCTCTAACAATTGTATTGTTCATTAATTTCTTCGTAGCACAGGCACTTCTATTGTTGGTTAATACTGGTATAAATTTGGGGGCAAAGAACAAGGAGAACAAAACCGCATTAGACATTGCAAGTACAGCAGAGATCAAGAGTATATTATTAAGTGTTGGAGCAAAACCTAGCTTAGAAGTCGCTGATTCTCGCACACGTGCACAAAGACTCAGGTCAAAGACCACAAAAAGAGATAATATGTCAACTTATTTATATCGCATTAAAACAAATATAACAGATGAGCAACGCAACACTTGGTTGATAGTTGCAACTCTTGTTGCAACTGCGATCTATCAATCAGGATTGAGTCCCCCTGGTGGAATTTATCAGGTTAGTGCCGGTGATGACAATGGTGGGAACGTCACTTCCTCAAATTCTACTATTTCTATTCCAGGAAATGCTGGGAAATCAATCTTGTCAGGATATGAATTCTTTTTGTTTTTATTTGTAAATATGTATTCCTTTTCTGTATCAATTTTAGCGATATTATTTATGATACCATATGGAAAAATATTCGGTCTAGTGGTTTCTCCAATGGGTTGGTTTACCGCTAG
Protein sequence

>MS.gene037950.t1

MNTSNLEQLKAAAQEGDIDLLYAVIEDDPFILEHIDLIPFVETPLHIAASMGHISFTIEIMNLKPSFAWKLNPQGFSPIHLAMKNDQKYIVSFFVHNNKDLVRIKGREGLTPLHFASQNGEVELLAEFLSFCPDSPKYLTVRFETALHIAVKNQQYEALQVLVSWLKRNKRSGAQKLENRILNQRDKAGNTILHISALSSEPQALLLLVNTGINLGAKNKENKTALDIASTAEIKSILLSVGAKPSLEVADSRTRAQRLRSKTTKRDNMSTYLYRIKTNITDEQRNTWLIVATLVATAIYQSGLSPPGGIYQVSAGDDNGGNVTSSNSTISIPGNAGKSIFDIIYDTIWKNIRSSGFSNGLVYR