AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022109


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022109.t1 MTR_7g021090 88.288 333 39 0 1 333 1 333 0.0 608
MS.gene022109.t1 MTR_8g072510 70.326 337 93 2 3 333 4 339 5.82e-169 478
MS.gene022109.t1 MTR_8g039620 68.732 339 96 3 4 333 9 346 4.38e-167 473
MS.gene022109.t1 MTR_8g062410 70.482 332 96 2 3 333 4 334 1.02e-160 457
MS.gene022109.t1 MTR_3g016210 65.341 352 100 5 3 333 4 354 1.77e-157 449
MS.gene022109.t1 MTR_1g059930 63.743 342 115 2 1 333 1 342 7.25e-151 432
MS.gene022109.t1 MTR_8g068990 61.972 355 110 6 1 344 1 341 8.59e-148 425
MS.gene022109.t1 MTR_7g451420 64.103 312 106 2 1 306 1 312 2.12e-139 398
MS.gene022109.t1 MTR_8g073260 58.160 337 132 3 8 338 10 343 4.68e-137 397
MS.gene022109.t1 MTR_8g040930 67.123 292 84 4 52 333 2 291 7.05e-133 384
MS.gene022109.t1 MTR_8g041240 67.123 292 84 4 52 333 2 291 7.05e-133 384
MS.gene022109.t1 MTR_8g069880 60.843 332 121 5 9 333 7 336 3.10e-128 375
MS.gene022109.t1 MTR_8g066670 61.652 339 123 3 1 333 1067 1404 1.81e-126 396
MS.gene022109.t1 MTR_8g467780 54.386 342 140 4 8 333 10 351 6.41e-114 338
MS.gene022109.t1 MTR_3g105650 49.839 311 140 3 7 303 3 311 1.48e-100 303
MS.gene022109.t1 MTR_8g073275 44.258 357 117 8 52 336 2 348 4.91e-79 249
MS.gene022109.t1 MTR_7g099580 24.051 316 185 8 1 306 4 274 3.91e-23 99.0
MS.gene022109.t1 MTR_1g069110 25.680 331 196 10 9 319 18 318 1.40e-22 98.6
MS.gene022109.t1 MTR_2g101320 27.650 217 139 4 40 248 137 343 4.25e-21 94.7
MS.gene022109.t1 MTR_7g099570 27.354 223 148 3 9 226 9 222 8.31e-20 90.9
MS.gene022109.t1 MTR_7g117620 25.694 288 172 5 44 302 119 393 7.64e-19 87.8
MS.gene022109.t1 MTR_2g101310 26.087 253 159 6 40 274 137 379 3.01e-17 83.2
MS.gene022109.t1 MTR_2g101310 27.442 215 138 4 40 246 137 341 3.36e-17 82.8
MS.gene022109.t1 MTR_1g115575 24.675 308 185 9 44 322 169 458 1.67e-15 78.2
MS.gene022109.t1 MTR_4g062100 25.490 255 167 5 9 256 74 312 4.97e-14 73.6
MS.gene022109.t1 MTR_1g032100 24.138 290 177 7 44 302 94 371 1.19e-13 72.4
MS.gene022109.t1 MTR_2g096190 22.054 331 215 7 2 302 63 380 3.40e-13 70.9
MS.gene022109.t1 MTR_7g100390 25.152 330 205 10 2 302 46 362 1.03e-12 69.3
MS.gene022109.t1 MTR_8g105260 27.907 215 133 5 44 249 101 302 3.51e-12 67.8
MS.gene022109.t1 MTR_5g085480 25.893 224 148 5 9 227 214 424 3.19e-11 65.1
MS.gene022109.t1 MTR_5g085480 25.561 223 150 5 9 227 54 264 4.22e-11 64.3
MS.gene022109.t1 MTR_6g027840 28.934 197 126 8 44 230 246 438 6.28e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022109.t1 AT4G10720 43.750 320 166 3 8 313 4 323 5.43e-81 253
MS.gene022109.t1 AT4G10720 43.750 320 166 3 8 313 4 323 1.50e-80 253
MS.gene022109.t1 AT5G15500 41.212 330 179 6 9 324 6 334 1.11e-76 243
MS.gene022109.t1 AT1G14500 38.994 318 179 3 8 310 4 321 2.40e-75 239
MS.gene022109.t1 AT1G14480 37.461 323 186 3 8 314 4 326 1.88e-70 226
MS.gene022109.t1 AT5G54620 40.717 307 167 5 8 300 4 309 5.52e-67 217
MS.gene022109.t1 AT5G54610 39.274 303 169 5 8 297 4 304 5.40e-63 207
MS.gene022109.t1 AT1G14480 34.839 310 169 4 8 314 4 283 2.06e-54 184
MS.gene022109.t1 AT5G15500 37.799 209 116 5 110 304 1 209 3.49e-34 129
MS.gene022109.t1 AT5G51160 30.909 275 156 6 62 309 34 301 1.29e-30 121
MS.gene022109.t1 AT4G03460 28.169 213 128 4 100 303 290 486 7.12e-18 85.1
MS.gene022109.t1 AT4G03460 28.169 213 128 4 100 303 258 454 9.74e-18 84.7
MS.gene022109.t1 AT5G54700 26.977 215 125 6 101 311 23 209 1.87e-17 82.8
MS.gene022109.t1 AT4G03500 29.224 219 123 8 98 303 303 502 1.37e-16 81.3
MS.gene022109.t1 AT4G03500 29.224 219 123 8 98 303 280 479 1.47e-16 81.3
MS.gene022109.t1 AT4G03500 29.224 219 123 8 98 303 280 479 1.47e-16 81.3
MS.gene022109.t1 AT1G03670 30.180 222 120 8 101 309 279 478 4.64e-16 79.7
MS.gene022109.t1 AT5G54700 23.288 292 155 7 24 311 20 246 6.70e-16 79.0
MS.gene022109.t1 AT1G34050 24.138 261 168 6 65 306 174 423 7.72e-16 79.0
MS.gene022109.t1 AT4G03450 23.684 304 179 6 9 304 227 485 1.20e-14 75.5
MS.gene022109.t1 AT4G03450 23.684 304 179 6 9 304 227 485 1.84e-14 75.1
MS.gene022109.t1 AT1G05640 25.694 288 172 9 44 302 191 465 3.68e-14 73.9
MS.gene022109.t1 AT2G01680 26.316 209 134 3 44 244 97 293 5.25e-14 73.6
MS.gene022109.t1 AT5G02620 23.944 284 178 8 5 276 55 312 1.83e-13 71.6
MS.gene022109.t1 AT5G02620 23.944 284 178 8 5 276 55 312 1.83e-13 71.6
MS.gene022109.t1 AT5G02620 23.944 284 178 8 5 276 55 312 1.83e-13 71.6
MS.gene022109.t1 AT4G03480 24.169 331 183 11 9 324 357 634 2.06e-13 71.6
MS.gene022109.t1 AT4G03480 24.169 331 183 11 9 324 360 637 2.20e-13 71.6
MS.gene022109.t1 AT3G12360 24.221 289 178 8 44 303 167 443 4.38e-13 70.9
MS.gene022109.t1 AT3G12360 24.221 289 178 8 44 303 155 431 4.86e-13 70.5
MS.gene022109.t1 AT1G07710 23.229 353 228 8 5 327 65 404 6.82e-13 70.1
MS.gene022109.t1 AT1G07710 23.229 353 228 8 5 327 65 404 6.82e-13 70.1
MS.gene022109.t1 AT5G54710 25.926 243 139 7 95 306 219 451 7.52e-13 70.1
MS.gene022109.t1 AT5G54710 25.926 243 139 7 95 306 264 496 8.34e-13 69.7
MS.gene022109.t1 AT2G31820 23.264 288 179 6 44 302 227 501 1.54e-12 68.9
MS.gene022109.t1 AT3G09550 22.449 343 208 8 9 317 154 472 4.68e-12 67.4
MS.gene022109.t1 AT3G09550 22.449 343 208 8 9 317 147 465 4.96e-12 67.4
MS.gene022109.t1 AT3G09550 22.449 343 208 8 9 317 147 465 4.96e-12 67.4
MS.gene022109.t1 AT4G14390 25.188 266 183 5 42 304 272 524 6.24e-11 64.3
MS.gene022109.t1 AT4G14390 25.188 266 183 5 42 304 291 543 8.49e-11 63.9

Find 72 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACCAAGCGGACAAATTA+TGG 0.181768 7.4:-80601611 MS.gene022109:intron
TCATAATTTCAGTAGCAAAT+TGG 0.281833 7.4:+80603660 None:intergenic
TGAGGATGATCCATTCATTC+TGG 0.307992 7.4:-80603747 MS.gene022109:CDS
AAAGACCTTGTTAGAATTCA+AGG 0.317733 7.4:-80603527 MS.gene022109:CDS
GAGGCCCTTCAAGTACTTGC+TGG 0.360616 7.4:-80603353 MS.gene022109:CDS
TCCAGAAAATGCTGGGAAAT+CGG 0.380670 7.4:-80601719 MS.gene022109:intron
GTCAAGTATTCAATGGATTC+CGG 0.412377 7.4:+80603425 None:intergenic
GGATGGGGCTGAATCCTTGC+GGG 0.413574 7.4:+80603606 None:intergenic
CCCTTCAAGTACTTGCTGGC+TGG 0.414419 7.4:-80603349 MS.gene022109:CDS
TGCAAAATGAAGAGGAGTTA+TGG 0.420767 7.4:+80603496 None:intergenic
CCTCTAGTGGCTTCTCTAGC+GGG 0.434266 7.4:-80601586 MS.gene022109:CDS
AGAACAGGCAATTCGATTGT+TGG 0.448254 7.4:-80602094 MS.gene022109:intron
CTAAATGCTGCAGCTCAAGC+AGG 0.453056 7.4:-80603797 MS.gene022109:CDS
AGTGGAAATAGTAGAATTTG+AGG 0.454877 7.4:+80601741 None:intergenic
TTGTGCTGAAATGTGCAAAA+TGG 0.455088 7.4:+80603250 None:intergenic
CCACCAAGCGGACAAATTAT+GGG 0.459968 7.4:-80601610 MS.gene022109:intron
CAATTATCAACCAAGTGTTA+CGG 0.464718 7.4:+80601863 None:intergenic
TCTATATGATCCAGAATGAA+TGG 0.464792 7.4:+80603737 None:intergenic
AAATTTGAACACAATGAACT+TGG 0.466099 7.4:-80602058 MS.gene022109:CDS
GCAACTGCCATCTATCAATC+AGG 0.473264 7.4:-80601829 MS.gene022109:CDS
ACTCAATCCTGATTGATAGA+TGG 0.480622 7.4:+80601822 None:intergenic
TAAATTTCTCAAGTTGTGTC+CGG 0.481016 7.4:-80603444 MS.gene022109:CDS
AGCACAAAGTACGGAGCGCC+AGG 0.482483 7.4:-80603234 MS.gene022109:intron
ATTTCCACTCCAGAAAATGC+TGG 0.485862 7.4:-80601727 MS.gene022109:CDS
CTCTTCCTTGAATTCTAACA+AGG 0.486736 7.4:+80603522 None:intergenic
CTCAAAACACATATAAATAG+AGG 0.488342 7.4:-80603326 MS.gene022109:CDS
TATTAAGAATCAACAATTTG+AGG 0.490260 7.4:-80603372 MS.gene022109:CDS
TCAAACATGAACACAAATAG+TGG 0.490467 7.4:-80603827 None:intergenic
TTTACATATCGCTGCAGCTA+AGG 0.493133 7.4:-80603690 MS.gene022109:CDS
ATCCTGAACTTAGACTGTTT+AGG 0.499172 7.4:+80601910 None:intergenic
TTTAGCTTCCAAGCAAATGA+TGG 0.500284 7.4:+80603629 None:intergenic
TGTTGAAACCATCATTTGCT+TGG 0.505440 7.4:-80603637 MS.gene022109:CDS
AAGAGTATATTATTCAGAGT+TGG 0.506930 7.4:-80601994 MS.gene022109:CDS
GCCAGCCAGCAAGTACTTGA+AGG 0.507268 7.4:+80603348 None:intergenic
CCTCACAGTCAAGTATTCAA+TGG 0.507786 7.4:+80603418 None:intergenic
GGAATTTATCAGGTTAGTGC+TGG 0.510633 7.4:-80601790 MS.gene022109:CDS
ACAAATTATGGGCCCTCTAG+TGG 0.515004 7.4:-80601599 MS.gene022109:CDS
GACCTAAACAGTCTAAGTTC+AGG 0.515457 7.4:-80601912 MS.gene022109:CDS
CCCTCTAGTGGCTTCTCTAG+CGG 0.515758 7.4:-80601587 MS.gene022109:CDS
GCACATTTCAGCACAAAGTA+CGG 0.526845 7.4:-80603243 MS.gene022109:CDS
TTTGAACACAATGAACTTGG+AGG 0.537401 7.4:-80602055 MS.gene022109:CDS
TCTCCTCTATGCAGTAATTG+AGG 0.537923 7.4:-80603765 MS.gene022109:CDS
ATTTCACTTGCAAAATGAAG+AGG 0.544959 7.4:+80603488 None:intergenic
TTACATATCGCTGCAGCTAA+GGG 0.554656 7.4:-80603689 MS.gene022109:CDS
TTTGCATAGCGAGATGGATG+GGG 0.562354 7.4:+80603591 None:intergenic
TAGTGGCTTCTCTAGCGGGT+TGG 0.563021 7.4:-80601582 MS.gene022109:CDS
TTGAACACAATGAACTTGGA+GGG 0.571167 7.4:-80602054 MS.gene022109:CDS
TTAGCTGCAGCGATATGTAA+AGG 0.572481 7.4:+80603692 None:intergenic
AATATTAAACACGAGGGATG+AGG 0.575254 7.4:-80603282 MS.gene022109:CDS
CAGAGGAGAACCGTAACACT+TGG 0.576139 7.4:-80601873 MS.gene022109:CDS
CATCCTCAATTACTGCATAG+AGG 0.579619 7.4:+80603762 None:intergenic
GCATCAGTGACTTCTAAGCT+AGG 0.580948 7.4:+80601964 None:intergenic
TTTCCACTCCAGAAAATGCT+GGG 0.584974 7.4:-80601726 MS.gene022109:CDS
TTAAACACGAGGGATGAGGC+AGG 0.589011 7.4:-80603278 MS.gene022109:CDS
TGGATGGGGCTGAATCCTTG+CGG 0.591962 7.4:+80603605 None:intergenic
CTAACCTGATAAATTCCACC+AGG 0.595881 7.4:+80601796 None:intergenic
CCAGCCAGCAAGTACTTGAA+GGG 0.615296 7.4:+80603349 None:intergenic
ATGCTCCCACACTTGCACAT+AGG 0.615297 7.4:-80601945 MS.gene022109:CDS
CTTGAACCTATGTGCAAGTG+TGG 0.617764 7.4:+80601939 None:intergenic
CCGCTAGAGAAGCCACTAGA+GGG 0.624402 7.4:+80601587 None:intergenic
TAGACATAGCAAGCATTCCA+CGG 0.630997 7.4:-80602020 MS.gene022109:CDS
CCCGCTAGAGAAGCCACTAG+AGG 0.633723 7.4:+80601586 None:intergenic
AATAATATACTCTTGATCCG+TGG 0.636012 7.4:+80602003 None:intergenic
GCTTGGAAGCTAAACCCGCA+AGG 0.648349 7.4:-80603620 MS.gene022109:CDS
CCATTGAATACTTGACTGTG+AGG 0.675589 7.4:-80603418 MS.gene022109:CDS
AAAACAAATATTAAACACGA+GGG 0.680733 7.4:-80603288 MS.gene022109:CDS
GATTAGAGAAGATATGACAG+AGG 0.687362 7.4:-80601890 MS.gene022109:CDS
AACCTGATAAATTCCACCAG+GGG 0.693447 7.4:+80601798 None:intergenic
TAACCTGATAAATTCCACCA+GGG 0.695982 7.4:+80601797 None:intergenic
GTTAGTGCTGGTAATGACAA+TGG 0.697137 7.4:-80601778 MS.gene022109:CDS
TTGAACCTATGTGCAAGTGT+GGG 0.705991 7.4:+80601940 None:intergenic
ACCTGATAAATTCCACCAGG+GGG 0.706697 7.4:+80601799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAATAATAACAAATA+TGG + chr7.4:80603081-80603100 None:intergenic 10.0%
!! TTGTATTTGTTTATTTATAT+GGG + chr7.4:80602456-80602475 None:intergenic 10.0%
!! TTTGTATTTGTTTATTTATA+TGG + chr7.4:80602457-80602476 None:intergenic 10.0%
!! ATCAATTATAAAGTTCTTTA+AGG - chr7.4:80602343-80602362 MS.gene022109:intron 15.0%
!! CTTAAAACGATTATTAAAAT+GGG + chr7.4:80603150-80603169 None:intergenic 15.0%
!!! AATTATAGCAATTTTTCTTA+TGG - chr7.4:80603757-80603776 MS.gene022109:CDS 15.0%
!! AAAAACAAATATTAAACACG+AGG - chr7.4:80602103-80602122 MS.gene022109:intron 20.0%
!! AAAACAAATATTAAACACGA+GGG - chr7.4:80602104-80602123 MS.gene022109:intron 20.0%
!! AAACAAAAAGAAACATGTTT+CGG + chr7.4:80603043-80603062 None:intergenic 20.0%
!! AACAGAAGAAAAATAATATG+GGG - chr7.4:80602623-80602642 MS.gene022109:intron 20.0%
!! CAACAGAAGAAAAATAATAT+GGG - chr7.4:80602622-80602641 MS.gene022109:intron 20.0%
!! CCTTAAAACGATTATTAAAA+TGG + chr7.4:80603151-80603170 None:intergenic 20.0%
!! GTACGAATTTGAAAATAAAA+TGG - chr7.4:80602368-80602387 MS.gene022109:intron 20.0%
!! TATTAAGAATCAACAATTTG+AGG - chr7.4:80602020-80602039 MS.gene022109:CDS 20.0%
!!! CCATTTTAATAATCGTTTTA+AGG - chr7.4:80603148-80603167 MS.gene022109:intron 20.0%
! AAATTTGAACACAATGAACT+TGG - chr7.4:80603334-80603353 MS.gene022109:CDS 25.0%
! ACTAGCATAATATAAGAAAG+AGG - chr7.4:80602597-80602616 MS.gene022109:intron 25.0%
! ATAAAATTAGAGTCGTAGAT+AGG - chr7.4:80603217-80603236 MS.gene022109:intron 25.0%
! ATGCATTTAATAAAGTGACA+GGG - chr7.4:80602224-80602243 MS.gene022109:intron 25.0%
! CTCAAAACACATATAAATAG+AGG - chr7.4:80602066-80602085 MS.gene022109:CDS 25.0%
! GCAACAGAAGAAAAATAATA+TGG - chr7.4:80602621-80602640 MS.gene022109:intron 25.0%
! GCTATAATTGATACAGTAAA+GGG + chr7.4:80603746-80603765 None:intergenic 25.0%
! GTATAAAAAATGTCCTAGTA+GGG - chr7.4:80602813-80602832 MS.gene022109:intron 25.0%
! TATGCATTTAATAAAGTGAC+AGG - chr7.4:80602223-80602242 MS.gene022109:intron 25.0%
! TCATAATTTCAGTAGCAAAT+TGG + chr7.4:80601735-80601754 None:intergenic 25.0%
! TGCTATAATTGATACAGTAA+AGG + chr7.4:80603747-80603766 None:intergenic 25.0%
! TGTATTGTTCATTCATTACT+TGG - chr7.4:80603274-80603293 MS.gene022109:CDS 25.0%
!! AAGAGTATATTATTCAGAGT+TGG - chr7.4:80603398-80603417 MS.gene022109:CDS 25.0%
!!! ATTTTTTCGATAAGATTACC+TGG + chr7.4:80602179-80602198 None:intergenic 25.0%
!!! TGTAAAGGAGTTTTAACAAA+TGG + chr7.4:80601688-80601707 None:intergenic 25.0%
AAAGACCTTGTTAGAATTCA+AGG - chr7.4:80601865-80601884 MS.gene022109:CDS 30.0%
AAAGATATATCAGCTCGATA+AGG - chr7.4:80602493-80602512 MS.gene022109:intron 30.0%
AAGTAGTAGTAAGAGTTATG+CGG - chr7.4:80602741-80602760 MS.gene022109:intron 30.0%
AATAATATACTCTTGATCCG+TGG + chr7.4:80603392-80603411 None:intergenic 30.0%
AGTGGAAATAGTAGAATTTG+AGG + chr7.4:80603654-80603673 None:intergenic 30.0%
ATTTCACTTGCAAAATGAAG+AGG + chr7.4:80601907-80601926 None:intergenic 30.0%
CAATTATCAACCAAGTGTTA+CGG + chr7.4:80603532-80603551 None:intergenic 30.0%
CTCCAAAATACAAATCCAAA+GGG - chr7.4:80602419-80602438 MS.gene022109:intron 30.0%
GATTACACATCAAGTTATAC+AGG - chr7.4:80602649-80602668 MS.gene022109:intron 30.0%
GATTATTAAAATGGGACAGA+GGG + chr7.4:80603142-80603161 None:intergenic 30.0%
GGTATAAAAAATGTCCTAGT+AGG - chr7.4:80602812-80602831 MS.gene022109:intron 30.0%
TCTATATGATCCAGAATGAA+TGG + chr7.4:80601658-80601677 None:intergenic 30.0%
TCTCCAAAATACAAATCCAA+AGG - chr7.4:80602418-80602437 MS.gene022109:intron 30.0%
! CTTCATTTTGCAAGTGAAAT+TGG - chr7.4:80601907-80601926 MS.gene022109:CDS 30.0%
! TAAATTTCTCAAGTTGTGTC+CGG - chr7.4:80601948-80601967 MS.gene022109:CDS 30.0%
! TTCCCTTTGGATTTGTATTT+TGG + chr7.4:80602424-80602443 None:intergenic 30.0%
AAAAGAAACATGTTTCGGAC+TGG + chr7.4:80603038-80603057 None:intergenic 35.0%
AAATACACCAGATCGCATAA+CGG + chr7.4:80602969-80602988 None:intergenic 35.0%
AAATTAGAGTCGTAGATAGG+TGG - chr7.4:80603220-80603239 MS.gene022109:intron 35.0%
AATATTAAACACGAGGGATG+AGG - chr7.4:80602110-80602129 MS.gene022109:intron 35.0%
ACTCAATCCTGATTGATAGA+TGG + chr7.4:80603573-80603592 None:intergenic 35.0%
ATCCTGAACTTAGACTGTTT+AGG + chr7.4:80603485-80603504 None:intergenic 35.0%
CATTCATTACTTGGTAGAAC+AGG - chr7.4:80603283-80603302 MS.gene022109:CDS 35.0%
CGATTATTAAAATGGGACAG+AGG + chr7.4:80603143-80603162 None:intergenic 35.0%
CTCTTCCTTGAATTCTAACA+AGG + chr7.4:80601873-80601892 None:intergenic 35.0%
GATTAGAGAAGATATGACAG+AGG - chr7.4:80603502-80603521 MS.gene022109:CDS 35.0%
TAACCTGATAAATTCCACCA+GGG + chr7.4:80603598-80603617 None:intergenic 35.0%
TATCCTGGCAATCATACATT+CGG - chr7.4:80602852-80602871 MS.gene022109:intron 35.0%
TGCAAAATGAAGAGGAGTTA+TGG + chr7.4:80601899-80601918 None:intergenic 35.0%
TGTTGAAACCATCATTTGCT+TGG - chr7.4:80601755-80601774 MS.gene022109:CDS 35.0%
TTGAACACAATGAACTTGGA+GGG - chr7.4:80603338-80603357 MS.gene022109:CDS 35.0%
TTGTGCTGAAATGTGCAAAA+TGG + chr7.4:80602145-80602164 None:intergenic 35.0%
TTTGAACACAATGAACTTGG+AGG - chr7.4:80603337-80603356 MS.gene022109:CDS 35.0%
! ATGCGATCTGGTGTATTTTA+GGG - chr7.4:80602971-80602990 MS.gene022109:intron 35.0%
! GTCAAGTATTCAATGGATTC+CGG + chr7.4:80601970-80601989 None:intergenic 35.0%
! TATGCGATCTGGTGTATTTT+AGG - chr7.4:80602970-80602989 MS.gene022109:intron 35.0%
! TTTAGCTTCCAAGCAAATGA+TGG + chr7.4:80601766-80601785 None:intergenic 35.0%
! TTTTGCAAGTGAAATTGGTG+AGG - chr7.4:80601912-80601931 MS.gene022109:CDS 35.0%
!! AAATAGAGGTGCTAAAAAGC+TGG - chr7.4:80602080-80602099 MS.gene022109:CDS 35.0%
!!! CTAGGACATTTTTTATACCC+AGG + chr7.4:80602811-80602830 None:intergenic 35.0%
AACCTGATAAATTCCACCAG+GGG + chr7.4:80603597-80603616 None:intergenic 40.0%
AGAACAGGCAATTCGATTGT+TGG - chr7.4:80603298-80603317 MS.gene022109:CDS 40.0%
AGCGGCGGAAATTAAAGATT+AGG + chr7.4:80602528-80602547 None:intergenic 40.0%
ATCCTGGCAATCATACATTC+GGG - chr7.4:80602853-80602872 MS.gene022109:intron 40.0%
ATCTCTTATCCAATCCTCGT+AGG - chr7.4:80602569-80602588 MS.gene022109:intron 40.0%
ATTTCCACTCCAGAAAATGC+TGG - chr7.4:80603665-80603684 MS.gene022109:CDS 40.0%
CATCCTCAATTACTGCATAG+AGG + chr7.4:80601633-80601652 None:intergenic 40.0%
CCATTGAATACTTGACTGTG+AGG - chr7.4:80601974-80601993 MS.gene022109:CDS 40.0%
CCTCACAGTCAAGTATTCAA+TGG + chr7.4:80601977-80601996 None:intergenic 40.0%
CTAACCTGATAAATTCCACC+AGG + chr7.4:80603599-80603618 None:intergenic 40.0%
GACCTAAACAGTCTAAGTTC+AGG - chr7.4:80603480-80603499 MS.gene022109:CDS 40.0%
GCACATTTCAGCACAAAGTA+CGG - chr7.4:80602149-80602168 MS.gene022109:intron 40.0%
GGAATTTATCAGGTTAGTGC+TGG - chr7.4:80603602-80603621 MS.gene022109:CDS 40.0%
GGTCTTACAAATATTGCCAG+CGG - chr7.4:80602266-80602285 MS.gene022109:intron 40.0%
GTCTTACAAATATTGCCAGC+GGG - chr7.4:80602267-80602286 MS.gene022109:intron 40.0%
TAGACATAGCAAGCATTCCA+CGG - chr7.4:80603372-80603391 MS.gene022109:CDS 40.0%
TATACCCAGGCATTATCCTT+GGG + chr7.4:80602798-80602817 None:intergenic 40.0%
TCCAGAAAATGCTGGGAAAT+CGG - chr7.4:80603673-80603692 MS.gene022109:CDS 40.0%
TCTCCTCTATGCAGTAATTG+AGG - chr7.4:80601627-80601646 MS.gene022109:intron 40.0%
TGAGGATGATCCATTCATTC+TGG - chr7.4:80601645-80601664 MS.gene022109:intron 40.0%
TGGGAACATTCATTTCCCTT+TGG + chr7.4:80602437-80602456 None:intergenic 40.0%
TTACATATCGCTGCAGCTAA+GGG - chr7.4:80601703-80601722 MS.gene022109:intron 40.0%
TTAGCTGCAGCGATATGTAA+AGG + chr7.4:80601703-80601722 None:intergenic 40.0%
TTATACCCAGGCATTATCCT+TGG + chr7.4:80602799-80602818 None:intergenic 40.0%
TTGAACCTATGTGCAAGTGT+GGG + chr7.4:80603455-80603474 None:intergenic 40.0%
TTTACATATCGCTGCAGCTA+AGG - chr7.4:80601702-80601721 MS.gene022109:intron 40.0%
TTTCCACTCCAGAAAATGCT+GGG - chr7.4:80603666-80603685 MS.gene022109:CDS 40.0%
TTTCTTATGGTACCACCAAG+CGG - chr7.4:80603770-80603789 MS.gene022109:CDS 40.0%
! AGCGATAAACCAGACGTTTT+TGG + chr7.4:80601831-80601850 None:intergenic 40.0%
! TAGAGTCTCAAGCTTTATCC+TGG - chr7.4:80602837-80602856 MS.gene022109:intron 40.0%
! TTTTGCATAGCGAGATGGAT+GGG + chr7.4:80601805-80601824 None:intergenic 40.0%
!! GTTAGTGCTGGTAATGACAA+TGG - chr7.4:80603614-80603633 MS.gene022109:CDS 40.0%
!! TGCGATCTGGTGTATTTTAG+GGG - chr7.4:80602972-80602991 MS.gene022109:intron 40.0%
!! TGGTGTATTTTAGGGGACTT+GGG - chr7.4:80602979-80602998 MS.gene022109:intron 40.0%
ACAAATTATGGGCCCTCTAG+TGG - chr7.4:80603793-80603812 MS.gene022109:CDS 45.0%
ACCACCAAGCGGACAAATTA+TGG - chr7.4:80603781-80603800 MS.gene022109:CDS 45.0%
ACCTGATAAATTCCACCAGG+GGG + chr7.4:80603596-80603615 None:intergenic 45.0%
CCACCAAGCGGACAAATTAT+GGG - chr7.4:80603782-80603801 MS.gene022109:CDS 45.0%
CTTGAACCTATGTGCAAGTG+TGG + chr7.4:80603456-80603475 None:intergenic 45.0%
GAACTACCCTCGAACTTCAT+GGG - chr7.4:80602908-80602927 MS.gene022109:intron 45.0%
GAAGTTTCATACCTTGCCCA+AGG - chr7.4:80602779-80602798 MS.gene022109:intron 45.0%
GCAAAACGACCAAAAACGTC+TGG - chr7.4:80601819-80601838 MS.gene022109:CDS 45.0%
GCAACTGCCATCTATCAATC+AGG - chr7.4:80603563-80603582 MS.gene022109:CDS 45.0%
GCATCAGTGACTTCTAAGCT+AGG + chr7.4:80603431-80603450 None:intergenic 45.0%
GTGCGAAGATGAGTAACTCT+CGG - chr7.4:80602875-80602894 MS.gene022109:intron 45.0%
TGAACTACCCTCGAACTTCA+TGG - chr7.4:80602907-80602926 MS.gene022109:intron 45.0%
TTTGCATAGCGAGATGGATG+GGG + chr7.4:80601804-80601823 None:intergenic 45.0%
! AGTTTTTACTCTTTGCCCGC+TGG + chr7.4:80602285-80602304 None:intergenic 45.0%
! GTTTTGCATAGCGAGATGGA+TGG + chr7.4:80601806-80601825 None:intergenic 45.0%
!! ACCGATTTCCCAGCATTTTC+TGG + chr7.4:80603677-80603696 None:intergenic 45.0%
!! CTGGTGTATTTTAGGGGACT+TGG - chr7.4:80602978-80602997 MS.gene022109:intron 45.0%
!! GAGATCATGTCGACTCTTAG+CGG + chr7.4:80602546-80602565 None:intergenic 45.0%
!! TTTCCCAGCATTTTCTGGAG+TGG + chr7.4:80603672-80603691 None:intergenic 45.0%
ATGCTCCCACACTTGCACAT+AGG - chr7.4:80603447-80603466 MS.gene022109:CDS 50.0%
CACCCGAATGTATGATTGCC+AGG + chr7.4:80602858-80602877 None:intergenic 50.0%
CAGAGGAGAACCGTAACACT+TGG - chr7.4:80603519-80603538 MS.gene022109:CDS 50.0%
CCAGCCAGCAAGTACTTGAA+GGG + chr7.4:80602046-80602065 None:intergenic 50.0%
CTAAATGCTGCAGCTCAAGC+AGG - chr7.4:80601595-80601614 MS.gene022109:CDS 50.0%
CTTGAGACTCTAGCCCTACT+AGG + chr7.4:80602829-80602848 None:intergenic 50.0%
CTTGCCCAAGGATAATGCCT+GGG - chr7.4:80602791-80602810 MS.gene022109:intron 50.0%
GGCTGAACACAGTTTCTCAC+TGG - chr7.4:80602245-80602264 MS.gene022109:intron 50.0%
TAGTAGCTGCCTACGAGGAT+TGG + chr7.4:80602581-80602600 None:intergenic 50.0%
TATGCTAGTAGCTGCCTACG+AGG + chr7.4:80602586-80602605 None:intergenic 50.0%
TCCCCCTGGTGGAATTTATC+AGG - chr7.4:80603592-80603611 MS.gene022109:CDS 50.0%
TCTTGGTCCGTTATGCGATC+TGG - chr7.4:80602959-80602978 MS.gene022109:intron 50.0%
TTAAACACGAGGGATGAGGC+AGG - chr7.4:80602114-80602133 MS.gene022109:intron 50.0%
! CCCATAATTTGTCCGCTTGG+TGG + chr7.4:80603785-80603804 None:intergenic 50.0%
!! ACATGTTTCGGACTGGCCTA+AGG + chr7.4:80603031-80603050 None:intergenic 50.0%
!! ATCATGTCGACTCTTAGCGG+CGG + chr7.4:80602543-80602562 None:intergenic 50.0%
!! GGTCGTTTTGCATAGCGAGA+TGG + chr7.4:80601810-80601829 None:intergenic 50.0%
AAGAGCTGCTCACAGGTCTG+GGG + chr7.4:80602943-80602962 None:intergenic 55.0%
ACTCACGCCCATGAAGTTCG+AGG + chr7.4:80602918-80602937 None:intergenic 55.0%
CAAGAGCTGCTCACAGGTCT+GGG + chr7.4:80602944-80602963 None:intergenic 55.0%
CAATCAGGATTGAGTCCCCC+TGG - chr7.4:80603578-80603597 MS.gene022109:CDS 55.0%
CCAGGCATTATCCTTGGGCA+AGG + chr7.4:80602793-80602812 None:intergenic 55.0%
CCCTCTAGTGGCTTCTCTAG+CGG - chr7.4:80603805-80603824 MS.gene022109:CDS 55.0%
CCGCTAGAGAAGCCACTAGA+GGG + chr7.4:80603808-80603827 None:intergenic 55.0%
CCTCTAGTGGCTTCTCTAGC+GGG - chr7.4:80603806-80603825 MS.gene022109:CDS 55.0%
CCTTGCCCAAGGATAATGCC+TGG - chr7.4:80602790-80602809 MS.gene022109:intron 55.0%
CTCACGCCCATGAAGTTCGA+GGG + chr7.4:80602917-80602936 None:intergenic 55.0%
GAGGCCCTTCAAGTACTTGC+TGG - chr7.4:80602039-80602058 MS.gene022109:CDS 55.0%
GATTCGAGCGGAGCCAGATT+GGG - chr7.4:80603005-80603024 MS.gene022109:intron 55.0%
GCCAGCCAGCAAGTACTTGA+AGG + chr7.4:80602047-80602066 None:intergenic 55.0%
GCTTGGAAGCTAAACCCGCA+AGG - chr7.4:80601772-80601791 MS.gene022109:CDS 55.0%
TGATTCGAGCGGAGCCAGAT+TGG - chr7.4:80603004-80603023 MS.gene022109:intron 55.0%
TGGATGGGGCTGAATCCTTG+CGG + chr7.4:80601790-80601809 None:intergenic 55.0%
! CCCTTCAAGTACTTGCTGGC+TGG - chr7.4:80602043-80602062 MS.gene022109:CDS 55.0%
! GCTGGGAAATCGGTCTTGTC+TGG - chr7.4:80603683-80603702 MS.gene022109:CDS 55.0%
! GGACTTGGGTCTGATTCGAG+CGG - chr7.4:80602993-80603012 MS.gene022109:intron 55.0%
! GGGCCCATAATTTGTCCGCT+TGG + chr7.4:80603788-80603807 None:intergenic 55.0%
! TAGTGGCTTCTCTAGCGGGT+TGG - chr7.4:80603810-80603829 MS.gene022109:CDS 55.0%
ACGGACCAAGAGCTGCTCAC+AGG + chr7.4:80602950-80602969 None:intergenic 60.0%
CCAAGAGCTGCTCACAGGTC+TGG + chr7.4:80602945-80602964 None:intergenic 60.0%
CCAGACCTGTGAGCAGCTCT+TGG - chr7.4:80602942-80602961 MS.gene022109:intron 60.0%
CCCGCTAGAGAAGCCACTAG+AGG + chr7.4:80603809-80603828 None:intergenic 60.0%
GGATGGGGCTGAATCCTTGC+GGG + chr7.4:80601789-80601808 None:intergenic 60.0%
TCAGGATTGAGTCCCCCTGG+TGG - chr7.4:80603581-80603600 MS.gene022109:CDS 60.0%
! AGCACAAAGTACGGAGCGCC+AGG - chr7.4:80602158-80602177 MS.gene022109:intron 60.0%
!! GACTGGCCTAAGGCCCAATC+TGG + chr7.4:80603021-80603040 None:intergenic 60.0%
GCGGAGCCAGATTGGGCCTT+AGG - chr7.4:80603012-80603031 MS.gene022109:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 80601571 80603843 80601571 ID=MS.gene022109
chr7.4 mRNA 80601571 80603843 80601571 ID=MS.gene022109.t1;Parent=MS.gene022109
chr7.4 exon 80603235 80603843 80603235 ID=MS.gene022109.t1.exon1;Parent=MS.gene022109.t1
chr7.4 CDS 80603235 80603843 80603235 ID=cds.MS.gene022109.t1;Parent=MS.gene022109.t1
chr7.4 exon 80601720 80602109 80601720 ID=MS.gene022109.t1.exon2;Parent=MS.gene022109.t1
chr7.4 CDS 80601720 80602109 80601720 ID=cds.MS.gene022109.t1;Parent=MS.gene022109.t1
chr7.4 exon 80601571 80601624 80601571 ID=MS.gene022109.t1.exon3;Parent=MS.gene022109.t1
chr7.4 CDS 80601571 80601624 80601571 ID=cds.MS.gene022109.t1;Parent=MS.gene022109.t1
Gene Sequence

>MS.gene022109

ATGAACACAAATAGTGGTGAGCAGCTAAATGCTGCAGCTCAAGCAGGCAATATAGATCTCCTCTATGCAGTAATTGAGGATGATCCATTCATTCTGGATCATATAGATTCGATACCATTTGTTAAAACTCCTTTACATATCGCTGCAGCTAAGGGTCATCTCCAATTTGCTACTGAAATTATGATGTTGAAACCATCATTTGCTTGGAAGCTAAACCCGCAAGGATTCAGCCCCATCCATCTCGCTATGCAAAACGACCAAAAACGTCTGGTTTATCGCTTCGTGAACATCAATAAAGACCTTGTTAGAATTCAAGGAAGAGAAGCCATAACTCCTCTTCATTTTGCAAGTGAAATTGGTGAGGTTGATCTTTTAGCTAAATTTCTCAAGTTGTGTCCGGAATCCATTGAATACTTGACTGTGAGGCACGAGACTGCACTGCATATTGCTATTAAGAATCAACAATTTGAGGCCCTTCAAGTACTTGCTGGCTGGCTCAAAACACATATAAATAGAGGTGCTAAAAAGCTGGAAAAACAAATATTAAACACGAGGGATGAGGCAGGCAACACCATTTTGCACATTTCAGCACAAAGTACGGAGCGCCAGGTAATCTTATCGAAAAAATCGTTTTGTAGCTGATAACAATTTTTATGCATTTAATAAAGTGACAGGGCTGAACACAGTTTCTCACTGGTCTTACAAATATTGCCAGCGGGCAAAGAGTAAAAACTTATACTTTTGAAATCTATAATTTTTCAAGTAAAATAATATCAATTATAAAGTTCTTTAAGGTTGTACGAATTTGAAAATAAAATGGATGTATTACACACATTATATATCACAGTCTCCAAAATACAAATCCAAAGGGAAATGAATGTTCCCATATAAATAAACAAATACAAATTAACAAAACAACTACAAAGATATATCAGCTCGATAAGGCTAACACAACCTAATCTTTAATTTCCGCCGCTAAGAGTCGACATGATCTCAACATCTCTTATCCAATCCTCGTAGGCAGCTACTAGCATAATATAAGAAAGAGGAGCAACAGAAGAAAAATAATATGGGGTCAGATTACACATCAAGTTATACAGGTAGATATGAGAATGTACACAATAGTATTTATTTAAATACACACACAAAAATCACACATTTATAAAAAATAAGTAGTAGTAAGAGTTATGCGGCTATAGTGTGCGTAAGAAGTTTCATACCTTGCCCAAGGATAATGCCTGGGTATAAAAAATGTCCTAGTAGGGCTAGAGTCTCAAGCTTTATCCTGGCAATCATACATTCGGGTGCGAAGATGAGTAACTCTCGGTCTAGATAGTGAACTACCCTCGAACTTCATGGGCGTGAGTAACCCCAGACCTGTGAGCAGCTCTTGGTCCGTTATGCGATCTGGTGTATTTTAGGGGACTTGGGTCTGATTCGAGCGGAGCCAGATTGGGCCTTAGGCCAGTCCGAAACATGTTTCTTTTTGTTTTGTTCTTAATGATGACCATATTTGTTATTATTTTTTTGTGTTCGAGAATAACATGAATGACAACTTGTAGATTACTCCCTCTGTCCCATTTTAATAATCGTTTTAAGGTTTTGCGCAGTTCTTAAAAAAATAATTAGTTTAGTTGATTTCAATGATAAAATTAGAGTCGTAGATAGGTGGCGTAGTTGCTAAATTAATTATCTTTGACAATTGTATTGTTCATTCATTACTTGGTAGAACAGGCAATTCGATTGTTGGTAAAGACTAAAATAAATTTGAACACAATGAACTTGGAGGGCAAAACAGCATTAGACATAGCAAGCATTCCACGGATCAAGAGTATATTATTCAGAGTTGGAGCAAAACCTAGCTTAGAAGTCACTGATGCTCCCACACTTGCACATAGGTTCAAGACTAGACCTAAACAGTCTAAGTTCAGGATTAGAGAAGATATGACAGAGGAGAACCGTAACACTTGGTTGATAATTGCAACTCTCGTTGCAACTGCCATCTATCAATCAGGATTGAGTCCCCCTGGTGGAATTTATCAGGTTAGTGCTGGTAATGACAATGGTGTGAACATCACTTCCTCAAATTCTACTATTTCCACTCCAGAAAATGCTGGGAAATCGGTCTTGTCTGGATATAAATTCTTTTTGTTTTTAATTGTAAACTTGTATCCCTTTACTGTATCAATTATAGCAATTTTTCTTATGGTACCACCAAGCGGACAAATTATGGGCCCTCTAGTGGCTTCTCTAGCGGGTTGGTTCAGCGCTAG

Protein sequence

>MS.gene022109.t1

MNTNSGEQLNAAAQAGNIDLLYAVIEDDPFILDHIDSIPFVKTPLHIAAAKGHLQFATEIMMLKPSFAWKLNPQGFSPIHLAMQNDQKRLVYRFVNINKDLVRIQGREAITPLHFASEIGEVDLLAKFLKLCPESIEYLTVRHETALHIAIKNQQFEALQVLAGWLKTHINRGAKKLEKQILNTRDEAGNTILHISAQSTERQAIRLLVKTKINLNTMNLEGKTALDIASIPRIKSILFRVGAKPSLEVTDAPTLAHRFKTRPKQSKFRIREDMTEENRNTWLIIATLVATAIYQSGLSPPGGIYQVSAGNDNGVNITSSNSTISTPENAGKSRTNYGPSSGFSSGLVQR