Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022109.t1 | AES77856.1 | 88.3 | 333 | 39 | 0 | 1 | 333 | 1 | 333 | 4.50E-161 | 577.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022109.t1 | Q8GYH5 | 26.5 | 302 | 207 | 5 | 8 | 296 | 4 | 303 | 1.2e-18 | 95.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022109.t1 | G7KSX2 | 88.3 | 333 | 39 | 0 | 1 | 333 | 1 | 333 | 3.2e-161 | 577.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022109.t1 | MTR_7g021090 | 88.288 | 333 | 39 | 0 | 1 | 333 | 1 | 333 | 0.0 | 608 |
MS.gene022109.t1 | MTR_8g072510 | 70.326 | 337 | 93 | 2 | 3 | 333 | 4 | 339 | 5.82e-169 | 478 |
MS.gene022109.t1 | MTR_8g039620 | 68.732 | 339 | 96 | 3 | 4 | 333 | 9 | 346 | 4.38e-167 | 473 |
MS.gene022109.t1 | MTR_8g062410 | 70.482 | 332 | 96 | 2 | 3 | 333 | 4 | 334 | 1.02e-160 | 457 |
MS.gene022109.t1 | MTR_3g016210 | 65.341 | 352 | 100 | 5 | 3 | 333 | 4 | 354 | 1.77e-157 | 449 |
MS.gene022109.t1 | MTR_1g059930 | 63.743 | 342 | 115 | 2 | 1 | 333 | 1 | 342 | 7.25e-151 | 432 |
MS.gene022109.t1 | MTR_8g068990 | 61.972 | 355 | 110 | 6 | 1 | 344 | 1 | 341 | 8.59e-148 | 425 |
MS.gene022109.t1 | MTR_7g451420 | 64.103 | 312 | 106 | 2 | 1 | 306 | 1 | 312 | 2.12e-139 | 398 |
MS.gene022109.t1 | MTR_8g073260 | 58.160 | 337 | 132 | 3 | 8 | 338 | 10 | 343 | 4.68e-137 | 397 |
MS.gene022109.t1 | MTR_8g040930 | 67.123 | 292 | 84 | 4 | 52 | 333 | 2 | 291 | 7.05e-133 | 384 |
MS.gene022109.t1 | MTR_8g041240 | 67.123 | 292 | 84 | 4 | 52 | 333 | 2 | 291 | 7.05e-133 | 384 |
MS.gene022109.t1 | MTR_8g069880 | 60.843 | 332 | 121 | 5 | 9 | 333 | 7 | 336 | 3.10e-128 | 375 |
MS.gene022109.t1 | MTR_8g066670 | 61.652 | 339 | 123 | 3 | 1 | 333 | 1067 | 1404 | 1.81e-126 | 396 |
MS.gene022109.t1 | MTR_8g467780 | 54.386 | 342 | 140 | 4 | 8 | 333 | 10 | 351 | 6.41e-114 | 338 |
MS.gene022109.t1 | MTR_3g105650 | 49.839 | 311 | 140 | 3 | 7 | 303 | 3 | 311 | 1.48e-100 | 303 |
MS.gene022109.t1 | MTR_8g073275 | 44.258 | 357 | 117 | 8 | 52 | 336 | 2 | 348 | 4.91e-79 | 249 |
MS.gene022109.t1 | MTR_7g099580 | 24.051 | 316 | 185 | 8 | 1 | 306 | 4 | 274 | 3.91e-23 | 99.0 |
MS.gene022109.t1 | MTR_1g069110 | 25.680 | 331 | 196 | 10 | 9 | 319 | 18 | 318 | 1.40e-22 | 98.6 |
MS.gene022109.t1 | MTR_2g101320 | 27.650 | 217 | 139 | 4 | 40 | 248 | 137 | 343 | 4.25e-21 | 94.7 |
MS.gene022109.t1 | MTR_7g099570 | 27.354 | 223 | 148 | 3 | 9 | 226 | 9 | 222 | 8.31e-20 | 90.9 |
MS.gene022109.t1 | MTR_7g117620 | 25.694 | 288 | 172 | 5 | 44 | 302 | 119 | 393 | 7.64e-19 | 87.8 |
MS.gene022109.t1 | MTR_2g101310 | 26.087 | 253 | 159 | 6 | 40 | 274 | 137 | 379 | 3.01e-17 | 83.2 |
MS.gene022109.t1 | MTR_2g101310 | 27.442 | 215 | 138 | 4 | 40 | 246 | 137 | 341 | 3.36e-17 | 82.8 |
MS.gene022109.t1 | MTR_1g115575 | 24.675 | 308 | 185 | 9 | 44 | 322 | 169 | 458 | 1.67e-15 | 78.2 |
MS.gene022109.t1 | MTR_4g062100 | 25.490 | 255 | 167 | 5 | 9 | 256 | 74 | 312 | 4.97e-14 | 73.6 |
MS.gene022109.t1 | MTR_1g032100 | 24.138 | 290 | 177 | 7 | 44 | 302 | 94 | 371 | 1.19e-13 | 72.4 |
MS.gene022109.t1 | MTR_2g096190 | 22.054 | 331 | 215 | 7 | 2 | 302 | 63 | 380 | 3.40e-13 | 70.9 |
MS.gene022109.t1 | MTR_7g100390 | 25.152 | 330 | 205 | 10 | 2 | 302 | 46 | 362 | 1.03e-12 | 69.3 |
MS.gene022109.t1 | MTR_8g105260 | 27.907 | 215 | 133 | 5 | 44 | 249 | 101 | 302 | 3.51e-12 | 67.8 |
MS.gene022109.t1 | MTR_5g085480 | 25.893 | 224 | 148 | 5 | 9 | 227 | 214 | 424 | 3.19e-11 | 65.1 |
MS.gene022109.t1 | MTR_5g085480 | 25.561 | 223 | 150 | 5 | 9 | 227 | 54 | 264 | 4.22e-11 | 64.3 |
MS.gene022109.t1 | MTR_6g027840 | 28.934 | 197 | 126 | 8 | 44 | 230 | 246 | 438 | 6.28e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene022109.t1 | AT4G10720 | 43.750 | 320 | 166 | 3 | 8 | 313 | 4 | 323 | 5.43e-81 | 253 |
MS.gene022109.t1 | AT4G10720 | 43.750 | 320 | 166 | 3 | 8 | 313 | 4 | 323 | 1.50e-80 | 253 |
MS.gene022109.t1 | AT5G15500 | 41.212 | 330 | 179 | 6 | 9 | 324 | 6 | 334 | 1.11e-76 | 243 |
MS.gene022109.t1 | AT1G14500 | 38.994 | 318 | 179 | 3 | 8 | 310 | 4 | 321 | 2.40e-75 | 239 |
MS.gene022109.t1 | AT1G14480 | 37.461 | 323 | 186 | 3 | 8 | 314 | 4 | 326 | 1.88e-70 | 226 |
MS.gene022109.t1 | AT5G54620 | 40.717 | 307 | 167 | 5 | 8 | 300 | 4 | 309 | 5.52e-67 | 217 |
MS.gene022109.t1 | AT5G54610 | 39.274 | 303 | 169 | 5 | 8 | 297 | 4 | 304 | 5.40e-63 | 207 |
MS.gene022109.t1 | AT1G14480 | 34.839 | 310 | 169 | 4 | 8 | 314 | 4 | 283 | 2.06e-54 | 184 |
MS.gene022109.t1 | AT5G15500 | 37.799 | 209 | 116 | 5 | 110 | 304 | 1 | 209 | 3.49e-34 | 129 |
MS.gene022109.t1 | AT5G51160 | 30.909 | 275 | 156 | 6 | 62 | 309 | 34 | 301 | 1.29e-30 | 121 |
MS.gene022109.t1 | AT4G03460 | 28.169 | 213 | 128 | 4 | 100 | 303 | 290 | 486 | 7.12e-18 | 85.1 |
MS.gene022109.t1 | AT4G03460 | 28.169 | 213 | 128 | 4 | 100 | 303 | 258 | 454 | 9.74e-18 | 84.7 |
MS.gene022109.t1 | AT5G54700 | 26.977 | 215 | 125 | 6 | 101 | 311 | 23 | 209 | 1.87e-17 | 82.8 |
MS.gene022109.t1 | AT4G03500 | 29.224 | 219 | 123 | 8 | 98 | 303 | 303 | 502 | 1.37e-16 | 81.3 |
MS.gene022109.t1 | AT4G03500 | 29.224 | 219 | 123 | 8 | 98 | 303 | 280 | 479 | 1.47e-16 | 81.3 |
MS.gene022109.t1 | AT4G03500 | 29.224 | 219 | 123 | 8 | 98 | 303 | 280 | 479 | 1.47e-16 | 81.3 |
MS.gene022109.t1 | AT1G03670 | 30.180 | 222 | 120 | 8 | 101 | 309 | 279 | 478 | 4.64e-16 | 79.7 |
MS.gene022109.t1 | AT5G54700 | 23.288 | 292 | 155 | 7 | 24 | 311 | 20 | 246 | 6.70e-16 | 79.0 |
MS.gene022109.t1 | AT1G34050 | 24.138 | 261 | 168 | 6 | 65 | 306 | 174 | 423 | 7.72e-16 | 79.0 |
MS.gene022109.t1 | AT4G03450 | 23.684 | 304 | 179 | 6 | 9 | 304 | 227 | 485 | 1.20e-14 | 75.5 |
MS.gene022109.t1 | AT4G03450 | 23.684 | 304 | 179 | 6 | 9 | 304 | 227 | 485 | 1.84e-14 | 75.1 |
MS.gene022109.t1 | AT1G05640 | 25.694 | 288 | 172 | 9 | 44 | 302 | 191 | 465 | 3.68e-14 | 73.9 |
MS.gene022109.t1 | AT2G01680 | 26.316 | 209 | 134 | 3 | 44 | 244 | 97 | 293 | 5.25e-14 | 73.6 |
MS.gene022109.t1 | AT5G02620 | 23.944 | 284 | 178 | 8 | 5 | 276 | 55 | 312 | 1.83e-13 | 71.6 |
MS.gene022109.t1 | AT5G02620 | 23.944 | 284 | 178 | 8 | 5 | 276 | 55 | 312 | 1.83e-13 | 71.6 |
MS.gene022109.t1 | AT5G02620 | 23.944 | 284 | 178 | 8 | 5 | 276 | 55 | 312 | 1.83e-13 | 71.6 |
MS.gene022109.t1 | AT4G03480 | 24.169 | 331 | 183 | 11 | 9 | 324 | 357 | 634 | 2.06e-13 | 71.6 |
MS.gene022109.t1 | AT4G03480 | 24.169 | 331 | 183 | 11 | 9 | 324 | 360 | 637 | 2.20e-13 | 71.6 |
MS.gene022109.t1 | AT3G12360 | 24.221 | 289 | 178 | 8 | 44 | 303 | 167 | 443 | 4.38e-13 | 70.9 |
MS.gene022109.t1 | AT3G12360 | 24.221 | 289 | 178 | 8 | 44 | 303 | 155 | 431 | 4.86e-13 | 70.5 |
MS.gene022109.t1 | AT1G07710 | 23.229 | 353 | 228 | 8 | 5 | 327 | 65 | 404 | 6.82e-13 | 70.1 |
MS.gene022109.t1 | AT1G07710 | 23.229 | 353 | 228 | 8 | 5 | 327 | 65 | 404 | 6.82e-13 | 70.1 |
MS.gene022109.t1 | AT5G54710 | 25.926 | 243 | 139 | 7 | 95 | 306 | 219 | 451 | 7.52e-13 | 70.1 |
MS.gene022109.t1 | AT5G54710 | 25.926 | 243 | 139 | 7 | 95 | 306 | 264 | 496 | 8.34e-13 | 69.7 |
MS.gene022109.t1 | AT2G31820 | 23.264 | 288 | 179 | 6 | 44 | 302 | 227 | 501 | 1.54e-12 | 68.9 |
MS.gene022109.t1 | AT3G09550 | 22.449 | 343 | 208 | 8 | 9 | 317 | 154 | 472 | 4.68e-12 | 67.4 |
MS.gene022109.t1 | AT3G09550 | 22.449 | 343 | 208 | 8 | 9 | 317 | 147 | 465 | 4.96e-12 | 67.4 |
MS.gene022109.t1 | AT3G09550 | 22.449 | 343 | 208 | 8 | 9 | 317 | 147 | 465 | 4.96e-12 | 67.4 |
MS.gene022109.t1 | AT4G14390 | 25.188 | 266 | 183 | 5 | 42 | 304 | 272 | 524 | 6.24e-11 | 64.3 |
MS.gene022109.t1 | AT4G14390 | 25.188 | 266 | 183 | 5 | 42 | 304 | 291 | 543 | 8.49e-11 | 63.9 |
Find 72 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCACCAAGCGGACAAATTA+TGG | 0.181768 | 7.4:-80601611 | MS.gene022109:intron |
TCATAATTTCAGTAGCAAAT+TGG | 0.281833 | 7.4:+80603660 | None:intergenic |
TGAGGATGATCCATTCATTC+TGG | 0.307992 | 7.4:-80603747 | MS.gene022109:CDS |
AAAGACCTTGTTAGAATTCA+AGG | 0.317733 | 7.4:-80603527 | MS.gene022109:CDS |
GAGGCCCTTCAAGTACTTGC+TGG | 0.360616 | 7.4:-80603353 | MS.gene022109:CDS |
TCCAGAAAATGCTGGGAAAT+CGG | 0.380670 | 7.4:-80601719 | MS.gene022109:intron |
GTCAAGTATTCAATGGATTC+CGG | 0.412377 | 7.4:+80603425 | None:intergenic |
GGATGGGGCTGAATCCTTGC+GGG | 0.413574 | 7.4:+80603606 | None:intergenic |
CCCTTCAAGTACTTGCTGGC+TGG | 0.414419 | 7.4:-80603349 | MS.gene022109:CDS |
TGCAAAATGAAGAGGAGTTA+TGG | 0.420767 | 7.4:+80603496 | None:intergenic |
CCTCTAGTGGCTTCTCTAGC+GGG | 0.434266 | 7.4:-80601586 | MS.gene022109:CDS |
AGAACAGGCAATTCGATTGT+TGG | 0.448254 | 7.4:-80602094 | MS.gene022109:intron |
CTAAATGCTGCAGCTCAAGC+AGG | 0.453056 | 7.4:-80603797 | MS.gene022109:CDS |
AGTGGAAATAGTAGAATTTG+AGG | 0.454877 | 7.4:+80601741 | None:intergenic |
TTGTGCTGAAATGTGCAAAA+TGG | 0.455088 | 7.4:+80603250 | None:intergenic |
CCACCAAGCGGACAAATTAT+GGG | 0.459968 | 7.4:-80601610 | MS.gene022109:intron |
CAATTATCAACCAAGTGTTA+CGG | 0.464718 | 7.4:+80601863 | None:intergenic |
TCTATATGATCCAGAATGAA+TGG | 0.464792 | 7.4:+80603737 | None:intergenic |
AAATTTGAACACAATGAACT+TGG | 0.466099 | 7.4:-80602058 | MS.gene022109:CDS |
GCAACTGCCATCTATCAATC+AGG | 0.473264 | 7.4:-80601829 | MS.gene022109:CDS |
ACTCAATCCTGATTGATAGA+TGG | 0.480622 | 7.4:+80601822 | None:intergenic |
TAAATTTCTCAAGTTGTGTC+CGG | 0.481016 | 7.4:-80603444 | MS.gene022109:CDS |
AGCACAAAGTACGGAGCGCC+AGG | 0.482483 | 7.4:-80603234 | MS.gene022109:intron |
ATTTCCACTCCAGAAAATGC+TGG | 0.485862 | 7.4:-80601727 | MS.gene022109:CDS |
CTCTTCCTTGAATTCTAACA+AGG | 0.486736 | 7.4:+80603522 | None:intergenic |
CTCAAAACACATATAAATAG+AGG | 0.488342 | 7.4:-80603326 | MS.gene022109:CDS |
TATTAAGAATCAACAATTTG+AGG | 0.490260 | 7.4:-80603372 | MS.gene022109:CDS |
TCAAACATGAACACAAATAG+TGG | 0.490467 | 7.4:-80603827 | None:intergenic |
TTTACATATCGCTGCAGCTA+AGG | 0.493133 | 7.4:-80603690 | MS.gene022109:CDS |
ATCCTGAACTTAGACTGTTT+AGG | 0.499172 | 7.4:+80601910 | None:intergenic |
TTTAGCTTCCAAGCAAATGA+TGG | 0.500284 | 7.4:+80603629 | None:intergenic |
TGTTGAAACCATCATTTGCT+TGG | 0.505440 | 7.4:-80603637 | MS.gene022109:CDS |
AAGAGTATATTATTCAGAGT+TGG | 0.506930 | 7.4:-80601994 | MS.gene022109:CDS |
GCCAGCCAGCAAGTACTTGA+AGG | 0.507268 | 7.4:+80603348 | None:intergenic |
CCTCACAGTCAAGTATTCAA+TGG | 0.507786 | 7.4:+80603418 | None:intergenic |
GGAATTTATCAGGTTAGTGC+TGG | 0.510633 | 7.4:-80601790 | MS.gene022109:CDS |
ACAAATTATGGGCCCTCTAG+TGG | 0.515004 | 7.4:-80601599 | MS.gene022109:CDS |
GACCTAAACAGTCTAAGTTC+AGG | 0.515457 | 7.4:-80601912 | MS.gene022109:CDS |
CCCTCTAGTGGCTTCTCTAG+CGG | 0.515758 | 7.4:-80601587 | MS.gene022109:CDS |
GCACATTTCAGCACAAAGTA+CGG | 0.526845 | 7.4:-80603243 | MS.gene022109:CDS |
TTTGAACACAATGAACTTGG+AGG | 0.537401 | 7.4:-80602055 | MS.gene022109:CDS |
TCTCCTCTATGCAGTAATTG+AGG | 0.537923 | 7.4:-80603765 | MS.gene022109:CDS |
ATTTCACTTGCAAAATGAAG+AGG | 0.544959 | 7.4:+80603488 | None:intergenic |
TTACATATCGCTGCAGCTAA+GGG | 0.554656 | 7.4:-80603689 | MS.gene022109:CDS |
TTTGCATAGCGAGATGGATG+GGG | 0.562354 | 7.4:+80603591 | None:intergenic |
TAGTGGCTTCTCTAGCGGGT+TGG | 0.563021 | 7.4:-80601582 | MS.gene022109:CDS |
TTGAACACAATGAACTTGGA+GGG | 0.571167 | 7.4:-80602054 | MS.gene022109:CDS |
TTAGCTGCAGCGATATGTAA+AGG | 0.572481 | 7.4:+80603692 | None:intergenic |
AATATTAAACACGAGGGATG+AGG | 0.575254 | 7.4:-80603282 | MS.gene022109:CDS |
CAGAGGAGAACCGTAACACT+TGG | 0.576139 | 7.4:-80601873 | MS.gene022109:CDS |
CATCCTCAATTACTGCATAG+AGG | 0.579619 | 7.4:+80603762 | None:intergenic |
GCATCAGTGACTTCTAAGCT+AGG | 0.580948 | 7.4:+80601964 | None:intergenic |
TTTCCACTCCAGAAAATGCT+GGG | 0.584974 | 7.4:-80601726 | MS.gene022109:CDS |
TTAAACACGAGGGATGAGGC+AGG | 0.589011 | 7.4:-80603278 | MS.gene022109:CDS |
TGGATGGGGCTGAATCCTTG+CGG | 0.591962 | 7.4:+80603605 | None:intergenic |
CTAACCTGATAAATTCCACC+AGG | 0.595881 | 7.4:+80601796 | None:intergenic |
CCAGCCAGCAAGTACTTGAA+GGG | 0.615296 | 7.4:+80603349 | None:intergenic |
ATGCTCCCACACTTGCACAT+AGG | 0.615297 | 7.4:-80601945 | MS.gene022109:CDS |
CTTGAACCTATGTGCAAGTG+TGG | 0.617764 | 7.4:+80601939 | None:intergenic |
CCGCTAGAGAAGCCACTAGA+GGG | 0.624402 | 7.4:+80601587 | None:intergenic |
TAGACATAGCAAGCATTCCA+CGG | 0.630997 | 7.4:-80602020 | MS.gene022109:CDS |
CCCGCTAGAGAAGCCACTAG+AGG | 0.633723 | 7.4:+80601586 | None:intergenic |
AATAATATACTCTTGATCCG+TGG | 0.636012 | 7.4:+80602003 | None:intergenic |
GCTTGGAAGCTAAACCCGCA+AGG | 0.648349 | 7.4:-80603620 | MS.gene022109:CDS |
CCATTGAATACTTGACTGTG+AGG | 0.675589 | 7.4:-80603418 | MS.gene022109:CDS |
AAAACAAATATTAAACACGA+GGG | 0.680733 | 7.4:-80603288 | MS.gene022109:CDS |
GATTAGAGAAGATATGACAG+AGG | 0.687362 | 7.4:-80601890 | MS.gene022109:CDS |
AACCTGATAAATTCCACCAG+GGG | 0.693447 | 7.4:+80601798 | None:intergenic |
TAACCTGATAAATTCCACCA+GGG | 0.695982 | 7.4:+80601797 | None:intergenic |
GTTAGTGCTGGTAATGACAA+TGG | 0.697137 | 7.4:-80601778 | MS.gene022109:CDS |
TTGAACCTATGTGCAAGTGT+GGG | 0.705991 | 7.4:+80601940 | None:intergenic |
ACCTGATAAATTCCACCAGG+GGG | 0.706697 | 7.4:+80601799 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAAAAATAATAACAAATA+TGG | + | chr7.4:80603081-80603100 | None:intergenic | 10.0% |
!! | TTGTATTTGTTTATTTATAT+GGG | + | chr7.4:80602456-80602475 | None:intergenic | 10.0% |
!! | TTTGTATTTGTTTATTTATA+TGG | + | chr7.4:80602457-80602476 | None:intergenic | 10.0% |
!! | ATCAATTATAAAGTTCTTTA+AGG | - | chr7.4:80602343-80602362 | MS.gene022109:intron | 15.0% |
!! | CTTAAAACGATTATTAAAAT+GGG | + | chr7.4:80603150-80603169 | None:intergenic | 15.0% |
!!! | AATTATAGCAATTTTTCTTA+TGG | - | chr7.4:80603757-80603776 | MS.gene022109:CDS | 15.0% |
!! | AAAAACAAATATTAAACACG+AGG | - | chr7.4:80602103-80602122 | MS.gene022109:intron | 20.0% |
!! | AAAACAAATATTAAACACGA+GGG | - | chr7.4:80602104-80602123 | MS.gene022109:intron | 20.0% |
!! | AAACAAAAAGAAACATGTTT+CGG | + | chr7.4:80603043-80603062 | None:intergenic | 20.0% |
!! | AACAGAAGAAAAATAATATG+GGG | - | chr7.4:80602623-80602642 | MS.gene022109:intron | 20.0% |
!! | CAACAGAAGAAAAATAATAT+GGG | - | chr7.4:80602622-80602641 | MS.gene022109:intron | 20.0% |
!! | CCTTAAAACGATTATTAAAA+TGG | + | chr7.4:80603151-80603170 | None:intergenic | 20.0% |
!! | GTACGAATTTGAAAATAAAA+TGG | - | chr7.4:80602368-80602387 | MS.gene022109:intron | 20.0% |
!! | TATTAAGAATCAACAATTTG+AGG | - | chr7.4:80602020-80602039 | MS.gene022109:CDS | 20.0% |
!!! | CCATTTTAATAATCGTTTTA+AGG | - | chr7.4:80603148-80603167 | MS.gene022109:intron | 20.0% |
! | AAATTTGAACACAATGAACT+TGG | - | chr7.4:80603334-80603353 | MS.gene022109:CDS | 25.0% |
! | ACTAGCATAATATAAGAAAG+AGG | - | chr7.4:80602597-80602616 | MS.gene022109:intron | 25.0% |
! | ATAAAATTAGAGTCGTAGAT+AGG | - | chr7.4:80603217-80603236 | MS.gene022109:intron | 25.0% |
! | ATGCATTTAATAAAGTGACA+GGG | - | chr7.4:80602224-80602243 | MS.gene022109:intron | 25.0% |
! | CTCAAAACACATATAAATAG+AGG | - | chr7.4:80602066-80602085 | MS.gene022109:CDS | 25.0% |
! | GCAACAGAAGAAAAATAATA+TGG | - | chr7.4:80602621-80602640 | MS.gene022109:intron | 25.0% |
! | GCTATAATTGATACAGTAAA+GGG | + | chr7.4:80603746-80603765 | None:intergenic | 25.0% |
! | GTATAAAAAATGTCCTAGTA+GGG | - | chr7.4:80602813-80602832 | MS.gene022109:intron | 25.0% |
! | TATGCATTTAATAAAGTGAC+AGG | - | chr7.4:80602223-80602242 | MS.gene022109:intron | 25.0% |
! | TCATAATTTCAGTAGCAAAT+TGG | + | chr7.4:80601735-80601754 | None:intergenic | 25.0% |
! | TGCTATAATTGATACAGTAA+AGG | + | chr7.4:80603747-80603766 | None:intergenic | 25.0% |
! | TGTATTGTTCATTCATTACT+TGG | - | chr7.4:80603274-80603293 | MS.gene022109:CDS | 25.0% |
!! | AAGAGTATATTATTCAGAGT+TGG | - | chr7.4:80603398-80603417 | MS.gene022109:CDS | 25.0% |
!!! | ATTTTTTCGATAAGATTACC+TGG | + | chr7.4:80602179-80602198 | None:intergenic | 25.0% |
!!! | TGTAAAGGAGTTTTAACAAA+TGG | + | chr7.4:80601688-80601707 | None:intergenic | 25.0% |
AAAGACCTTGTTAGAATTCA+AGG | - | chr7.4:80601865-80601884 | MS.gene022109:CDS | 30.0% | |
AAAGATATATCAGCTCGATA+AGG | - | chr7.4:80602493-80602512 | MS.gene022109:intron | 30.0% | |
AAGTAGTAGTAAGAGTTATG+CGG | - | chr7.4:80602741-80602760 | MS.gene022109:intron | 30.0% | |
AATAATATACTCTTGATCCG+TGG | + | chr7.4:80603392-80603411 | None:intergenic | 30.0% | |
AGTGGAAATAGTAGAATTTG+AGG | + | chr7.4:80603654-80603673 | None:intergenic | 30.0% | |
ATTTCACTTGCAAAATGAAG+AGG | + | chr7.4:80601907-80601926 | None:intergenic | 30.0% | |
CAATTATCAACCAAGTGTTA+CGG | + | chr7.4:80603532-80603551 | None:intergenic | 30.0% | |
CTCCAAAATACAAATCCAAA+GGG | - | chr7.4:80602419-80602438 | MS.gene022109:intron | 30.0% | |
GATTACACATCAAGTTATAC+AGG | - | chr7.4:80602649-80602668 | MS.gene022109:intron | 30.0% | |
GATTATTAAAATGGGACAGA+GGG | + | chr7.4:80603142-80603161 | None:intergenic | 30.0% | |
GGTATAAAAAATGTCCTAGT+AGG | - | chr7.4:80602812-80602831 | MS.gene022109:intron | 30.0% | |
TCTATATGATCCAGAATGAA+TGG | + | chr7.4:80601658-80601677 | None:intergenic | 30.0% | |
TCTCCAAAATACAAATCCAA+AGG | - | chr7.4:80602418-80602437 | MS.gene022109:intron | 30.0% | |
! | CTTCATTTTGCAAGTGAAAT+TGG | - | chr7.4:80601907-80601926 | MS.gene022109:CDS | 30.0% |
! | TAAATTTCTCAAGTTGTGTC+CGG | - | chr7.4:80601948-80601967 | MS.gene022109:CDS | 30.0% |
! | TTCCCTTTGGATTTGTATTT+TGG | + | chr7.4:80602424-80602443 | None:intergenic | 30.0% |
AAAAGAAACATGTTTCGGAC+TGG | + | chr7.4:80603038-80603057 | None:intergenic | 35.0% | |
AAATACACCAGATCGCATAA+CGG | + | chr7.4:80602969-80602988 | None:intergenic | 35.0% | |
AAATTAGAGTCGTAGATAGG+TGG | - | chr7.4:80603220-80603239 | MS.gene022109:intron | 35.0% | |
AATATTAAACACGAGGGATG+AGG | - | chr7.4:80602110-80602129 | MS.gene022109:intron | 35.0% | |
ACTCAATCCTGATTGATAGA+TGG | + | chr7.4:80603573-80603592 | None:intergenic | 35.0% | |
ATCCTGAACTTAGACTGTTT+AGG | + | chr7.4:80603485-80603504 | None:intergenic | 35.0% | |
CATTCATTACTTGGTAGAAC+AGG | - | chr7.4:80603283-80603302 | MS.gene022109:CDS | 35.0% | |
CGATTATTAAAATGGGACAG+AGG | + | chr7.4:80603143-80603162 | None:intergenic | 35.0% | |
CTCTTCCTTGAATTCTAACA+AGG | + | chr7.4:80601873-80601892 | None:intergenic | 35.0% | |
GATTAGAGAAGATATGACAG+AGG | - | chr7.4:80603502-80603521 | MS.gene022109:CDS | 35.0% | |
TAACCTGATAAATTCCACCA+GGG | + | chr7.4:80603598-80603617 | None:intergenic | 35.0% | |
TATCCTGGCAATCATACATT+CGG | - | chr7.4:80602852-80602871 | MS.gene022109:intron | 35.0% | |
TGCAAAATGAAGAGGAGTTA+TGG | + | chr7.4:80601899-80601918 | None:intergenic | 35.0% | |
TGTTGAAACCATCATTTGCT+TGG | - | chr7.4:80601755-80601774 | MS.gene022109:CDS | 35.0% | |
TTGAACACAATGAACTTGGA+GGG | - | chr7.4:80603338-80603357 | MS.gene022109:CDS | 35.0% | |
TTGTGCTGAAATGTGCAAAA+TGG | + | chr7.4:80602145-80602164 | None:intergenic | 35.0% | |
TTTGAACACAATGAACTTGG+AGG | - | chr7.4:80603337-80603356 | MS.gene022109:CDS | 35.0% | |
! | ATGCGATCTGGTGTATTTTA+GGG | - | chr7.4:80602971-80602990 | MS.gene022109:intron | 35.0% |
! | GTCAAGTATTCAATGGATTC+CGG | + | chr7.4:80601970-80601989 | None:intergenic | 35.0% |
! | TATGCGATCTGGTGTATTTT+AGG | - | chr7.4:80602970-80602989 | MS.gene022109:intron | 35.0% |
! | TTTAGCTTCCAAGCAAATGA+TGG | + | chr7.4:80601766-80601785 | None:intergenic | 35.0% |
! | TTTTGCAAGTGAAATTGGTG+AGG | - | chr7.4:80601912-80601931 | MS.gene022109:CDS | 35.0% |
!! | AAATAGAGGTGCTAAAAAGC+TGG | - | chr7.4:80602080-80602099 | MS.gene022109:CDS | 35.0% |
!!! | CTAGGACATTTTTTATACCC+AGG | + | chr7.4:80602811-80602830 | None:intergenic | 35.0% |
AACCTGATAAATTCCACCAG+GGG | + | chr7.4:80603597-80603616 | None:intergenic | 40.0% | |
AGAACAGGCAATTCGATTGT+TGG | - | chr7.4:80603298-80603317 | MS.gene022109:CDS | 40.0% | |
AGCGGCGGAAATTAAAGATT+AGG | + | chr7.4:80602528-80602547 | None:intergenic | 40.0% | |
ATCCTGGCAATCATACATTC+GGG | - | chr7.4:80602853-80602872 | MS.gene022109:intron | 40.0% | |
ATCTCTTATCCAATCCTCGT+AGG | - | chr7.4:80602569-80602588 | MS.gene022109:intron | 40.0% | |
ATTTCCACTCCAGAAAATGC+TGG | - | chr7.4:80603665-80603684 | MS.gene022109:CDS | 40.0% | |
CATCCTCAATTACTGCATAG+AGG | + | chr7.4:80601633-80601652 | None:intergenic | 40.0% | |
CCATTGAATACTTGACTGTG+AGG | - | chr7.4:80601974-80601993 | MS.gene022109:CDS | 40.0% | |
CCTCACAGTCAAGTATTCAA+TGG | + | chr7.4:80601977-80601996 | None:intergenic | 40.0% | |
CTAACCTGATAAATTCCACC+AGG | + | chr7.4:80603599-80603618 | None:intergenic | 40.0% | |
GACCTAAACAGTCTAAGTTC+AGG | - | chr7.4:80603480-80603499 | MS.gene022109:CDS | 40.0% | |
GCACATTTCAGCACAAAGTA+CGG | - | chr7.4:80602149-80602168 | MS.gene022109:intron | 40.0% | |
GGAATTTATCAGGTTAGTGC+TGG | - | chr7.4:80603602-80603621 | MS.gene022109:CDS | 40.0% | |
GGTCTTACAAATATTGCCAG+CGG | - | chr7.4:80602266-80602285 | MS.gene022109:intron | 40.0% | |
GTCTTACAAATATTGCCAGC+GGG | - | chr7.4:80602267-80602286 | MS.gene022109:intron | 40.0% | |
TAGACATAGCAAGCATTCCA+CGG | - | chr7.4:80603372-80603391 | MS.gene022109:CDS | 40.0% | |
TATACCCAGGCATTATCCTT+GGG | + | chr7.4:80602798-80602817 | None:intergenic | 40.0% | |
TCCAGAAAATGCTGGGAAAT+CGG | - | chr7.4:80603673-80603692 | MS.gene022109:CDS | 40.0% | |
TCTCCTCTATGCAGTAATTG+AGG | - | chr7.4:80601627-80601646 | MS.gene022109:intron | 40.0% | |
TGAGGATGATCCATTCATTC+TGG | - | chr7.4:80601645-80601664 | MS.gene022109:intron | 40.0% | |
TGGGAACATTCATTTCCCTT+TGG | + | chr7.4:80602437-80602456 | None:intergenic | 40.0% | |
TTACATATCGCTGCAGCTAA+GGG | - | chr7.4:80601703-80601722 | MS.gene022109:intron | 40.0% | |
TTAGCTGCAGCGATATGTAA+AGG | + | chr7.4:80601703-80601722 | None:intergenic | 40.0% | |
TTATACCCAGGCATTATCCT+TGG | + | chr7.4:80602799-80602818 | None:intergenic | 40.0% | |
TTGAACCTATGTGCAAGTGT+GGG | + | chr7.4:80603455-80603474 | None:intergenic | 40.0% | |
TTTACATATCGCTGCAGCTA+AGG | - | chr7.4:80601702-80601721 | MS.gene022109:intron | 40.0% | |
TTTCCACTCCAGAAAATGCT+GGG | - | chr7.4:80603666-80603685 | MS.gene022109:CDS | 40.0% | |
TTTCTTATGGTACCACCAAG+CGG | - | chr7.4:80603770-80603789 | MS.gene022109:CDS | 40.0% | |
! | AGCGATAAACCAGACGTTTT+TGG | + | chr7.4:80601831-80601850 | None:intergenic | 40.0% |
! | TAGAGTCTCAAGCTTTATCC+TGG | - | chr7.4:80602837-80602856 | MS.gene022109:intron | 40.0% |
! | TTTTGCATAGCGAGATGGAT+GGG | + | chr7.4:80601805-80601824 | None:intergenic | 40.0% |
!! | GTTAGTGCTGGTAATGACAA+TGG | - | chr7.4:80603614-80603633 | MS.gene022109:CDS | 40.0% |
!! | TGCGATCTGGTGTATTTTAG+GGG | - | chr7.4:80602972-80602991 | MS.gene022109:intron | 40.0% |
!! | TGGTGTATTTTAGGGGACTT+GGG | - | chr7.4:80602979-80602998 | MS.gene022109:intron | 40.0% |
ACAAATTATGGGCCCTCTAG+TGG | - | chr7.4:80603793-80603812 | MS.gene022109:CDS | 45.0% | |
ACCACCAAGCGGACAAATTA+TGG | - | chr7.4:80603781-80603800 | MS.gene022109:CDS | 45.0% | |
ACCTGATAAATTCCACCAGG+GGG | + | chr7.4:80603596-80603615 | None:intergenic | 45.0% | |
CCACCAAGCGGACAAATTAT+GGG | - | chr7.4:80603782-80603801 | MS.gene022109:CDS | 45.0% | |
CTTGAACCTATGTGCAAGTG+TGG | + | chr7.4:80603456-80603475 | None:intergenic | 45.0% | |
GAACTACCCTCGAACTTCAT+GGG | - | chr7.4:80602908-80602927 | MS.gene022109:intron | 45.0% | |
GAAGTTTCATACCTTGCCCA+AGG | - | chr7.4:80602779-80602798 | MS.gene022109:intron | 45.0% | |
GCAAAACGACCAAAAACGTC+TGG | - | chr7.4:80601819-80601838 | MS.gene022109:CDS | 45.0% | |
GCAACTGCCATCTATCAATC+AGG | - | chr7.4:80603563-80603582 | MS.gene022109:CDS | 45.0% | |
GCATCAGTGACTTCTAAGCT+AGG | + | chr7.4:80603431-80603450 | None:intergenic | 45.0% | |
GTGCGAAGATGAGTAACTCT+CGG | - | chr7.4:80602875-80602894 | MS.gene022109:intron | 45.0% | |
TGAACTACCCTCGAACTTCA+TGG | - | chr7.4:80602907-80602926 | MS.gene022109:intron | 45.0% | |
TTTGCATAGCGAGATGGATG+GGG | + | chr7.4:80601804-80601823 | None:intergenic | 45.0% | |
! | AGTTTTTACTCTTTGCCCGC+TGG | + | chr7.4:80602285-80602304 | None:intergenic | 45.0% |
! | GTTTTGCATAGCGAGATGGA+TGG | + | chr7.4:80601806-80601825 | None:intergenic | 45.0% |
!! | ACCGATTTCCCAGCATTTTC+TGG | + | chr7.4:80603677-80603696 | None:intergenic | 45.0% |
!! | CTGGTGTATTTTAGGGGACT+TGG | - | chr7.4:80602978-80602997 | MS.gene022109:intron | 45.0% |
!! | GAGATCATGTCGACTCTTAG+CGG | + | chr7.4:80602546-80602565 | None:intergenic | 45.0% |
!! | TTTCCCAGCATTTTCTGGAG+TGG | + | chr7.4:80603672-80603691 | None:intergenic | 45.0% |
ATGCTCCCACACTTGCACAT+AGG | - | chr7.4:80603447-80603466 | MS.gene022109:CDS | 50.0% | |
CACCCGAATGTATGATTGCC+AGG | + | chr7.4:80602858-80602877 | None:intergenic | 50.0% | |
CAGAGGAGAACCGTAACACT+TGG | - | chr7.4:80603519-80603538 | MS.gene022109:CDS | 50.0% | |
CCAGCCAGCAAGTACTTGAA+GGG | + | chr7.4:80602046-80602065 | None:intergenic | 50.0% | |
CTAAATGCTGCAGCTCAAGC+AGG | - | chr7.4:80601595-80601614 | MS.gene022109:CDS | 50.0% | |
CTTGAGACTCTAGCCCTACT+AGG | + | chr7.4:80602829-80602848 | None:intergenic | 50.0% | |
CTTGCCCAAGGATAATGCCT+GGG | - | chr7.4:80602791-80602810 | MS.gene022109:intron | 50.0% | |
GGCTGAACACAGTTTCTCAC+TGG | - | chr7.4:80602245-80602264 | MS.gene022109:intron | 50.0% | |
TAGTAGCTGCCTACGAGGAT+TGG | + | chr7.4:80602581-80602600 | None:intergenic | 50.0% | |
TATGCTAGTAGCTGCCTACG+AGG | + | chr7.4:80602586-80602605 | None:intergenic | 50.0% | |
TCCCCCTGGTGGAATTTATC+AGG | - | chr7.4:80603592-80603611 | MS.gene022109:CDS | 50.0% | |
TCTTGGTCCGTTATGCGATC+TGG | - | chr7.4:80602959-80602978 | MS.gene022109:intron | 50.0% | |
TTAAACACGAGGGATGAGGC+AGG | - | chr7.4:80602114-80602133 | MS.gene022109:intron | 50.0% | |
! | CCCATAATTTGTCCGCTTGG+TGG | + | chr7.4:80603785-80603804 | None:intergenic | 50.0% |
!! | ACATGTTTCGGACTGGCCTA+AGG | + | chr7.4:80603031-80603050 | None:intergenic | 50.0% |
!! | ATCATGTCGACTCTTAGCGG+CGG | + | chr7.4:80602543-80602562 | None:intergenic | 50.0% |
!! | GGTCGTTTTGCATAGCGAGA+TGG | + | chr7.4:80601810-80601829 | None:intergenic | 50.0% |
AAGAGCTGCTCACAGGTCTG+GGG | + | chr7.4:80602943-80602962 | None:intergenic | 55.0% | |
ACTCACGCCCATGAAGTTCG+AGG | + | chr7.4:80602918-80602937 | None:intergenic | 55.0% | |
CAAGAGCTGCTCACAGGTCT+GGG | + | chr7.4:80602944-80602963 | None:intergenic | 55.0% | |
CAATCAGGATTGAGTCCCCC+TGG | - | chr7.4:80603578-80603597 | MS.gene022109:CDS | 55.0% | |
CCAGGCATTATCCTTGGGCA+AGG | + | chr7.4:80602793-80602812 | None:intergenic | 55.0% | |
CCCTCTAGTGGCTTCTCTAG+CGG | - | chr7.4:80603805-80603824 | MS.gene022109:CDS | 55.0% | |
CCGCTAGAGAAGCCACTAGA+GGG | + | chr7.4:80603808-80603827 | None:intergenic | 55.0% | |
CCTCTAGTGGCTTCTCTAGC+GGG | - | chr7.4:80603806-80603825 | MS.gene022109:CDS | 55.0% | |
CCTTGCCCAAGGATAATGCC+TGG | - | chr7.4:80602790-80602809 | MS.gene022109:intron | 55.0% | |
CTCACGCCCATGAAGTTCGA+GGG | + | chr7.4:80602917-80602936 | None:intergenic | 55.0% | |
GAGGCCCTTCAAGTACTTGC+TGG | - | chr7.4:80602039-80602058 | MS.gene022109:CDS | 55.0% | |
GATTCGAGCGGAGCCAGATT+GGG | - | chr7.4:80603005-80603024 | MS.gene022109:intron | 55.0% | |
GCCAGCCAGCAAGTACTTGA+AGG | + | chr7.4:80602047-80602066 | None:intergenic | 55.0% | |
GCTTGGAAGCTAAACCCGCA+AGG | - | chr7.4:80601772-80601791 | MS.gene022109:CDS | 55.0% | |
TGATTCGAGCGGAGCCAGAT+TGG | - | chr7.4:80603004-80603023 | MS.gene022109:intron | 55.0% | |
TGGATGGGGCTGAATCCTTG+CGG | + | chr7.4:80601790-80601809 | None:intergenic | 55.0% | |
! | CCCTTCAAGTACTTGCTGGC+TGG | - | chr7.4:80602043-80602062 | MS.gene022109:CDS | 55.0% |
! | GCTGGGAAATCGGTCTTGTC+TGG | - | chr7.4:80603683-80603702 | MS.gene022109:CDS | 55.0% |
! | GGACTTGGGTCTGATTCGAG+CGG | - | chr7.4:80602993-80603012 | MS.gene022109:intron | 55.0% |
! | GGGCCCATAATTTGTCCGCT+TGG | + | chr7.4:80603788-80603807 | None:intergenic | 55.0% |
! | TAGTGGCTTCTCTAGCGGGT+TGG | - | chr7.4:80603810-80603829 | MS.gene022109:CDS | 55.0% |
ACGGACCAAGAGCTGCTCAC+AGG | + | chr7.4:80602950-80602969 | None:intergenic | 60.0% | |
CCAAGAGCTGCTCACAGGTC+TGG | + | chr7.4:80602945-80602964 | None:intergenic | 60.0% | |
CCAGACCTGTGAGCAGCTCT+TGG | - | chr7.4:80602942-80602961 | MS.gene022109:intron | 60.0% | |
CCCGCTAGAGAAGCCACTAG+AGG | + | chr7.4:80603809-80603828 | None:intergenic | 60.0% | |
GGATGGGGCTGAATCCTTGC+GGG | + | chr7.4:80601789-80601808 | None:intergenic | 60.0% | |
TCAGGATTGAGTCCCCCTGG+TGG | - | chr7.4:80603581-80603600 | MS.gene022109:CDS | 60.0% | |
! | AGCACAAAGTACGGAGCGCC+AGG | - | chr7.4:80602158-80602177 | MS.gene022109:intron | 60.0% |
!! | GACTGGCCTAAGGCCCAATC+TGG | + | chr7.4:80603021-80603040 | None:intergenic | 60.0% |
GCGGAGCCAGATTGGGCCTT+AGG | - | chr7.4:80603012-80603031 | MS.gene022109:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 80601571 | 80603843 | 80601571 | ID=MS.gene022109 |
chr7.4 | mRNA | 80601571 | 80603843 | 80601571 | ID=MS.gene022109.t1;Parent=MS.gene022109 |
chr7.4 | exon | 80603235 | 80603843 | 80603235 | ID=MS.gene022109.t1.exon1;Parent=MS.gene022109.t1 |
chr7.4 | CDS | 80603235 | 80603843 | 80603235 | ID=cds.MS.gene022109.t1;Parent=MS.gene022109.t1 |
chr7.4 | exon | 80601720 | 80602109 | 80601720 | ID=MS.gene022109.t1.exon2;Parent=MS.gene022109.t1 |
chr7.4 | CDS | 80601720 | 80602109 | 80601720 | ID=cds.MS.gene022109.t1;Parent=MS.gene022109.t1 |
chr7.4 | exon | 80601571 | 80601624 | 80601571 | ID=MS.gene022109.t1.exon3;Parent=MS.gene022109.t1 |
chr7.4 | CDS | 80601571 | 80601624 | 80601571 | ID=cds.MS.gene022109.t1;Parent=MS.gene022109.t1 |
Gene Sequence |
Protein sequence |