AlfalfaGEDB | MS.gene99554

M. sativa cultivar XinJiangDaYe / MS.gene99554

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13857.9 PF13962.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99554.t1	RHN41843.1	84.1	290	46	0	1	290	53	342	2.60E-93	352.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99554.t1	Q8GYH5	35.4	158	93	3	103	253	149	304	2.6e-14	80.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99554.t1	G7L8Q1	84.1	290	46	0	1	290	53	342	1.8e-93	352.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene035805	MS.gene99554	PPI
MS.gene99554	MS.gene025229	PPI
MS.gene69965	MS.gene99554	PPI
MS.gene99554	MS.gene043742	PPI
MS.gene99554	MS.gene027441	PPI
MS.gene99554	MS.gene050457	PPI
MS.gene99554	MS.gene99973	PPI
MS.gene99554	MS.gene21734	PPI
MS.gene99554	MS.gene008833	PPI
MS.gene30172	MS.gene99554	PPI
MS.gene23852	MS.gene99554	PPI
MS.gene69966	MS.gene99554	PPI
MS.gene97943	MS.gene99554	PPI
MS.gene071113	MS.gene99554	PPI
MS.gene99554	MS.gene48655	PPI
MS.gene99554	MS.gene066046	PPI
MS.gene027071	MS.gene99554	PPI
MS.gene67157	MS.gene99554	PPI
MS.gene30433	MS.gene99554	PPI
MS.gene012203	MS.gene99554	PPI
MS.gene99554	MS.gene027073	PPI
MS.gene99554	MS.gene34712	PPI
MS.gene010910	MS.gene99554	PPI
MS.gene063222	MS.gene99554	PPI
MS.gene99554	MS.gene037184	PPI
MS.gene07706	MS.gene99554	PPI
MS.gene027074	MS.gene99554	PPI
MS.gene99554	MS.gene23196	PPI
MS.gene69687	MS.gene99554	PPI
MS.gene99554	MS.gene067705	PPI
MS.gene99554	MS.gene41291	PPI
MS.gene99554	MS.gene042783	PPI
MS.gene23811	MS.gene99554	PPI
MS.gene23810	MS.gene99554	PPI
MS.gene99554	MS.gene027075	PPI
MS.gene78281	MS.gene99554	PPI
MS.gene99554	MS.gene30174	PPI
MS.gene99554	MS.gene26021	PPI
MS.gene005995	MS.gene99554	PPI
MS.gene037950	MS.gene99554	PPI
MS.gene99554	MS.gene050456	PPI
MS.gene99554	MS.gene064542	PPI
MS.gene99554	MS.gene053363	PPI
MS.gene64441	MS.gene99554	PPI
MS.gene99554	MS.gene91775	PPI
MS.gene24806	MS.gene99554	PPI
MS.gene99554	MS.gene25515	PPI
MS.gene99554	MS.gene34651	PPI
MS.gene99554	MS.gene32726	PPI
MS.gene007487	MS.gene99554	PPI
MS.gene99554	MS.gene050270	PPI
MS.gene99554	MS.gene052956	PPI
MS.gene99554	MS.gene60920	PPI
MS.gene99554	MS.gene73119	PPI
MS.gene99554	MS.gene92243	PPI
MS.gene066464	MS.gene99554	PPI
MS.gene99554	MS.gene34009	PPI
MS.gene99554	MS.gene018518	PPI
MS.gene99554	MS.gene043662	PPI
MS.gene99554	MS.gene065848	PPI
MS.gene99554	MS.gene004844	PPI
MS.gene24922	MS.gene99554	PPI
MS.gene99554	MS.gene54764	PPI
MS.gene99554	MS.gene038519	PPI
MS.gene010912	MS.gene99554	PPI
MS.gene99554	MS.gene27223	PPI
MS.gene99554	MS.gene39623	PPI
MS.gene99554	MS.gene25024	PPI
MS.gene99554	MS.gene26019	PPI
MS.gene99554	MS.gene022109	PPI
MS.gene51335	MS.gene99554	PPI
MS.gene99554	MS.gene050272	PPI
MS.gene99554	MS.gene30176	PPI
MS.gene36842	MS.gene99554	PPI
MS.gene99554	MS.gene51258	PPI
MS.gene068249	MS.gene99554	PPI
MS.gene99554	MS.gene32723	PPI
MS.gene051003	MS.gene99554	PPI
MS.gene99554	MS.gene02469	PPI
MS.gene41291	MS.gene99554	PPI
MS.gene99554	MS.gene024753	PPI
MS.gene99554	MS.gene71122	PPI
MS.gene99554	MS.gene51278	PPI
MS.gene99554	MS.gene69966	PPI
MS.gene99554	MS.gene85534	PPI
MS.gene22482	MS.gene99554	PPI
MS.gene99554	MS.gene51262	PPI
MS.gene99554	MS.gene23881	PPI
MS.gene99554	MS.gene26672	PPI
MS.gene039682	MS.gene99554	PPI
MS.gene061932	MS.gene99554	PPI
MS.gene99554	MS.gene014931	PPI
MS.gene99554	MS.gene062662	PPI
MS.gene99554	MS.gene21888	PPI
MS.gene99554	MS.gene97379	PPI
MS.gene26532	MS.gene99554	PPI
MS.gene99554	MS.gene066500	PPI
MS.gene066467	MS.gene99554	PPI
MS.gene47479	MS.gene99554	PPI
MS.gene99554	MS.gene30177	PPI
MS.gene99554	MS.gene70008	PPI
MS.gene008767	MS.gene99554	PPI
MS.gene99554	MS.gene90400	PPI
MS.gene71204	MS.gene99554	PPI
MS.gene007486	MS.gene99554	PPI
MS.gene99554	MS.gene99588	PPI
MS.gene99554	MS.gene82740	PPI
MS.gene99554	MS.gene09785	PPI
MS.gene99554	MS.gene041770	PPI
MS.gene99554	MS.gene81055	PPI
MS.gene99554	MS.gene65775	PPI
MS.gene99554	MS.gene80163	PPI
MS.gene058128	MS.gene99554	PPI
MS.gene99554	MS.gene33377	PPI
MS.gene066501	MS.gene99554	PPI
MS.gene25244	MS.gene99554	PPI
MS.gene99554	MS.gene045937	PPI
MS.gene99554	MS.gene027072	PPI
MS.gene99554	MS.gene65463	PPI
MS.gene08470	MS.gene99554	PPI
MS.gene99554	MS.gene007485	PPI
MS.gene63085	MS.gene99554	PPI
MS.gene056455	MS.gene99554	PPI
MS.gene89986	MS.gene99554	PPI
MS.gene99554	MS.gene87218	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99554.t1	MTR_8g073260	93.448	290	19	0	1	290	53	342	0.0	556
MS.gene99554.t1	MTR_8g073275	62.953	359	54	6	1	290	1	349	1.80e-143	411
MS.gene99554.t1	MTR_3g016210	60.984	305	102	2	1	288	52	356	1.73e-130	378
MS.gene99554.t1	MTR_7g451420	66.667	264	88	0	2	265	52	315	2.20e-128	368
MS.gene99554.t1	MTR_8g039620	61.905	294	107	2	1	289	56	349	1.31e-125	365
MS.gene99554.t1	MTR_1g059930	62.457	293	107	1	1	290	54	346	2.98e-125	364
MS.gene99554.t1	MTR_8g072510	61.512	291	110	1	1	289	52	342	9.08e-125	363
MS.gene99554.t1	MTR_8g040930	59.661	295	114	2	1	290	1	295	4.21e-122	354
MS.gene99554.t1	MTR_8g041240	59.661	295	114	2	1	290	1	295	4.21e-122	354
MS.gene99554.t1	MTR_8g467780	58.804	301	111	2	2	289	54	354	1.26e-114	338
MS.gene99554.t1	MTR_8g069880	59.386	293	115	3	2	291	50	341	2.21e-114	338
MS.gene99554.t1	MTR_7g021090	56.014	291	119	2	1	288	51	335	4.57e-111	327
MS.gene99554.t1	MTR_8g068990	56.122	294	110	4	1	289	54	333	2.85e-106	317
MS.gene99554.t1	MTR_8g066670	58.763	291	116	3	2	289	1118	1407	3.19e-106	338
MS.gene99554.t1	MTR_8g062410	58.644	295	107	5	1	289	52	337	2.81e-104	311
MS.gene99554.t1	MTR_3g105650	51.321	265	121	2	2	259	48	311	1.33e-95	288
MS.gene99554.t1	MTR_2g101320	28.571	203	127	4	2	196	149	341	5.99e-17	81.3
MS.gene99554.t1	MTR_1g032100	25.402	311	179	9	2	279	102	392	4.57e-16	78.6
MS.gene99554.t1	MTR_7g117620	26.523	279	171	7	2	258	127	393	5.11e-16	78.6
MS.gene99554.t1	MTR_7g100430	26.923	286	158	10	22	259	155	437	2.39e-15	76.3
MS.gene99554.t1	MTR_1g115575	24.765	319	164	8	2	259	142	445	3.63e-15	75.9
MS.gene99554.t1	MTR_7g099580	22.878	271	158	7	1	266	54	278	3.84e-15	75.1
MS.gene99554.t1	MTR_2g101310	27.941	204	129	4	2	197	149	342	1.51e-14	73.9
MS.gene99554.t1	MTR_2g101310	28.365	208	126	5	2	197	149	345	1.67e-14	73.9
MS.gene99554.t1	MTR_5g085500	31.646	158	96	4	28	181	8	157	1.80e-14	73.6
MS.gene99554.t1	MTR_2g096190	25.623	281	173	7	2	258	112	380	6.59e-14	72.0
MS.gene99554.t1	MTR_4g062100	25.275	273	168	7	10	258	124	384	7.35e-13	68.9
MS.gene99554.t1	MTR_7g100390	25.088	283	169	6	15	274	108	370	1.44e-12	68.2
MS.gene99554.t1	MTR_8g105260	24.561	285	172	6	2	258	109	378	4.86e-12	66.6
MS.gene99554.t1	MTR_2g033050	27.624	181	119	4	5	181	212	384	1.90e-11	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene99554.t1	AT4G10720	46.350	274	139	2	2	267	48	321	2.77e-81	251
MS.gene99554.t1	AT4G10720	44.792	288	151	2	2	281	48	335	5.30e-81	251
MS.gene99554.t1	AT1G14500	42.537	268	145	2	4	262	50	317	6.15e-69	220
MS.gene99554.t1	AT5G54610	42.471	259	140	3	2	253	48	304	1.94e-62	203
MS.gene99554.t1	AT5G15500	40.345	290	165	3	2	283	49	338	3.51e-62	203
MS.gene99554.t1	AT1G14480	39.146	281	159	3	1	271	47	325	9.13e-62	202
MS.gene99554.t1	AT5G54620	42.642	265	139	5	2	256	48	309	4.81e-61	200
MS.gene99554.t1	AT1G14480	37.729	273	131	7	1	271	47	282	1.33e-42	150
MS.gene99554.t1	AT5G15500	37.500	232	137	3	60	283	1	232	8.04e-40	142
MS.gene99554.t1	AT5G51160	31.802	283	157	7	7	265	31	301	4.07e-38	140
MS.gene99554.t1	AT1G10340	28.322	286	157	7	29	278	175	448	4.74e-18	84.3
MS.gene99554.t1	AT1G10340	28.322	286	157	7	29	278	171	444	4.76e-18	84.3
MS.gene99554.t1	AT4G03500	29.114	237	114	7	44	259	276	479	1.50e-16	80.1
MS.gene99554.t1	AT4G03500	29.114	237	114	7	44	259	276	479	1.50e-16	80.1
MS.gene99554.t1	AT4G03500	29.114	237	114	7	44	259	299	502	1.59e-16	80.1
MS.gene99554.t1	AT1G34050	24.468	282	171	7	3	262	162	423	3.42e-16	79.0
MS.gene99554.t1	AT4G03460	27.755	245	123	7	44	268	284	494	4.01e-16	79.0
MS.gene99554.t1	AT4G03460	27.755	245	123	7	44	268	252	462	4.25e-16	78.6
MS.gene99554.t1	AT2G24600	27.891	294	171	9	18	278	163	448	4.82e-16	78.6
MS.gene99554.t1	AT2G24600	27.891	294	171	9	18	278	163	448	4.82e-16	78.6
MS.gene99554.t1	AT5G54710	26.207	290	157	10	10	262	182	451	6.01e-16	78.2
MS.gene99554.t1	AT5G54710	26.207	290	157	10	10	262	227	496	6.22e-16	78.2
MS.gene99554.t1	AT2G24600	28.058	278	159	9	18	262	163	432	1.56e-15	77.0
MS.gene99554.t1	AT2G24600	28.058	278	159	9	18	262	163	432	1.56e-15	77.0
MS.gene99554.t1	AT3G09550	26.408	284	168	7	2	259	196	464	1.05e-14	74.7
MS.gene99554.t1	AT3G09550	26.408	284	168	7	2	259	189	457	1.07e-14	74.7
MS.gene99554.t1	AT3G09550	26.408	284	168	7	2	259	189	457	1.07e-14	74.7
MS.gene99554.t1	AT2G01680	23.841	302	193	5	2	278	105	394	2.53e-14	73.6
MS.gene99554.t1	AT4G03490	28.679	265	144	10	48	292	267	506	3.46e-14	73.2
MS.gene99554.t1	AT5G02620	26.056	284	171	7	2	258	102	373	3.67e-14	72.8
MS.gene99554.t1	AT5G02620	26.056	284	171	7	2	258	102	373	3.67e-14	72.8
MS.gene99554.t1	AT5G02620	26.056	284	171	7	2	258	102	373	3.67e-14	72.8
MS.gene99554.t1	AT4G03490	28.679	265	144	10	48	292	267	506	4.13e-14	72.8
MS.gene99554.t1	AT4G03490	28.679	265	144	10	48	292	257	496	4.71e-14	72.8
MS.gene99554.t1	AT1G05640	25.090	279	175	6	2	258	199	465	1.09e-13	71.6
MS.gene99554.t1	AT3G12360	23.750	320	166	10	2	259	140	443	2.07e-13	70.9
MS.gene99554.t1	AT3G12360	23.750	320	166	10	2	259	128	431	2.58e-13	70.5
MS.gene99554.t1	AT2G31820	24.373	279	177	7	2	258	235	501	2.66e-13	70.5
MS.gene99554.t1	AT4G03480	23.264	288	161	9	10	274	375	625	1.79e-12	67.8
MS.gene99554.t1	AT4G03480	23.264	288	161	9	10	274	372	622	1.96e-12	67.8
MS.gene99554.t1	AT5G50140	25.258	194	119	5	1	178	37	220	1.87e-11	64.7
MS.gene99554.t1	AT1G03670	25.551	227	130	6	51	265	279	478	3.22e-11	64.3

Find 47 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAACTCCCTAGCACCTTTC+TGG	0.140310	8.3:-29281118	None:intergenic
TCATAATTTCAGTGGCAAAT+TGG	0.236402	8.3:-29280770	None:intergenic
GTAACATCTTCAATAGAATT+TGG	0.238255	8.3:-29281005	None:intergenic
CACCACTTCTTTGAATTCTA+AGG	0.264459	8.3:+29282142	MS.gene99554:CDS
AGCACTAAACAATGACTTAA+AGG	0.290188	8.3:+29281196	MS.gene99554:CDS
AACGAAGAACCATACTCTTT+TGG	0.306347	8.3:-29280866	None:intergenic
TCTTAATTTATCTTCAAGTT+TGG	0.313621	8.3:-29281928	None:intergenic
TAGTAATATACCCTTGATTT+CGG	0.324028	8.3:-29281865	None:intergenic
CTCTTCATGTCTTGATTGGT+TGG	0.326614	8.3:+29281081	MS.gene99554:CDS
TCGTTTAGTAGACATGAATA+AGG	0.333885	8.3:+29280884	MS.gene99554:CDS
GAAATTGATACTTAACTATA+AGG	0.349323	8.3:+29281142	MS.gene99554:CDS
GAGTCTCTTCATGTCTTGAT+TGG	0.381796	8.3:+29281077	MS.gene99554:CDS
GCAAAACAACCAAAAGAGTA+TGG	0.383921	8.3:+29280857	MS.gene99554:CDS
GATTGAAACCTTCATTTGCT+TGG	0.413951	8.3:+29280793	MS.gene99554:CDS
AGCAGCAAGTGCCGAAATCA+AGG	0.421794	8.3:+29281854	MS.gene99554:CDS
TCTTTGAATTCTAAGGAAGT+TGG	0.473706	8.3:+29282149	MS.gene99554:CDS
CTTTGCATTCAAATTTACCT+TGG	0.475404	8.3:-29281802	None:intergenic
TTCCTTAGAATTCAAAGAAG+TGG	0.477218	8.3:-29282144	None:intergenic
AAGGAACTTGTTAGAATCAA+AGG	0.479455	8.3:+29280903	MS.gene99554:CDS
TTCACAGGCGCTTCGACTGT+TGG	0.486468	8.3:+29281773	MS.gene99554:intron
CTTCATCTTGCTTCTCAAAG+TGG	0.496958	8.3:+29280945	MS.gene99554:CDS
TTTAGCTTCCAAGCAAATGA+AGG	0.500060	8.3:-29280801	None:intergenic
CCAGAAAGGTGCTAGGGAGT+TGG	0.506593	8.3:+29281118	MS.gene99554:CDS
CTTAACTATAAGGATGAGAA+AGG	0.516753	8.3:+29281152	MS.gene99554:CDS
AAGGGTATATTACTAAGTGC+TGG	0.522957	8.3:+29281873	MS.gene99554:CDS
GGTAAATCAGTTATTTCTGA+AGG	0.526141	8.3:+29282170	MS.gene99554:CDS
CTTTGAGAAGCAAGATGAAG+AGG	0.528399	8.3:-29280942	None:intergenic
GTTAGAATCAAAGGAAGGGA+AGG	0.542029	8.3:+29280912	MS.gene99554:CDS
TTTCAATCTCATAATTTCAG+TGG	0.552567	8.3:-29280778	None:intergenic
CCAAGCTCAAAAGTCAAAGA+TGG	0.559102	8.3:+29281903	MS.gene99554:CDS
CAAATCGCCAGAAAGGTGCT+AGG	0.562466	8.3:+29281111	MS.gene99554:CDS
TTGAAGACAAATCGCCAGAA+AGG	0.567374	8.3:+29281104	MS.gene99554:CDS
AACTTGTTAGAATCAAAGGA+AGG	0.583415	8.3:+29280907	MS.gene99554:CDS
TTACCTTGATAAACTCCACC+AGG	0.585352	8.3:-29282089	None:intergenic
GCTTGGAAGCTAAATCAACA+AGG	0.604414	8.3:+29280810	MS.gene99554:CDS
AAATCGCCAGAAAGGTGCTA+GGG	0.606626	8.3:+29281112	MS.gene99554:CDS
TATTGAAGATGTTACTGTGA+GGG	0.607181	8.3:+29281013	MS.gene99554:CDS
ACTTGTTAGAATCAAAGGAA+GGG	0.615429	8.3:+29280908	MS.gene99554:CDS
GCAGCAAGTGCCGAAATCAA+GGG	0.615626	8.3:+29281855	MS.gene99554:CDS
CTTGGAAGCTAAATCAACAA+GGG	0.626538	8.3:+29280811	MS.gene99554:CDS
ATTGAAGATGTTACTGTGAG+GGG	0.652124	8.3:+29281014	MS.gene99554:CDS
TACCTTGATAAACTCCACCA+GGG	0.669953	8.3:-29282088	None:intergenic
TCGACTGTTGGTAAAGACCA+AGG	0.673714	8.3:+29281785	MS.gene99554:CDS
ACCTTGATAAACTCCACCAG+GGG	0.689637	8.3:-29282087	None:intergenic
TATTAGAAAAGATATATCAG+AGG	0.690330	8.3:+29281995	MS.gene99554:CDS
CTATTGAAGATGTTACTGTG+AGG	0.691369	8.3:+29281012	MS.gene99554:CDS
CCTTGATAAACTCCACCAGG+GGG	0.739127	8.3:-29282086	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATATATATACTAAATAGA+AGG	-	chr8.3:29281225-29281244	None:intergenic	10.0%
!!!	TTTTTTTTGATAAATAACAA+TGG	+	chr8.3:29281246-29281265	MS.gene99554:intron	10.0%
!!	ATATGAACAACAAAAATTAT+AGG	-	chr8.3:29281603-29281622	None:intergenic	15.0%
!!	AAGTGTATTCAAAATTGATA+AGG	-	chr8.3:29282207-29282226	None:intergenic	20.0%
!!	ACAAATAAAGAGATATAAAG+GGG	-	chr8.3:29281580-29281599	None:intergenic	20.0%
!!	GAAATTGATACTTAACTATA+AGG	+	chr8.3:29281142-29281161	MS.gene99554:CDS	20.0%
!!	GACAAATAAAGAGATATAAA+GGG	-	chr8.3:29281581-29281600	None:intergenic	20.0%
!!	TATTAGAAAAGATATATCAG+AGG	+	chr8.3:29281995-29282014	MS.gene99554:CDS	20.0%
!!!	ATAACAACTATTTTATTCAC+AGG	+	chr8.3:29281758-29281777	MS.gene99554:intron	20.0%
!!!	TCTTAATTTATCTTCAAGTT+TGG	-	chr8.3:29281931-29281950	None:intergenic	20.0%
!	GAAAAATTGATCTTCTTTAG+CGG	-	chr8.3:29281549-29281568	None:intergenic	25.0%
!	GGACAAATAAAGAGATATAA+AGG	-	chr8.3:29281582-29281601	None:intergenic	25.0%
!	GTAACATCTTCAATAGAATT+TGG	-	chr8.3:29281008-29281027	None:intergenic	25.0%
!	TAGTAATATACCCTTGATTT+CGG	-	chr8.3:29281868-29281887	None:intergenic	25.0%
!	TCAAAAAACTAGGACTATAT+GGG	+	chr8.3:29281375-29281394	MS.gene99554:intron	25.0%
!	TCATATGTCATAGTCTTTAT+TGG	+	chr8.3:29281617-29281636	MS.gene99554:intron	25.0%
!	TGTCAAAAGATATATTGTCA+AGG	-	chr8.3:29282246-29282265	None:intergenic	25.0%
!	TTTCAATCTCATAATTTCAG+TGG	-	chr8.3:29280781-29280800	None:intergenic	25.0%
!!	AAGATCAAATGTCACATTTT+TGG	+	chr8.3:29281947-29281966	MS.gene99554:CDS	25.0%
!!!	ATATAGTCCTAGTTTTTTGA+CGG	-	chr8.3:29281375-29281394	None:intergenic	25.0%
!!!	ATTCTTTATTGCTGACTTTA+CGG	+	chr8.3:29281448-29281467	MS.gene99554:intron	25.0%
!!!	GATATGTTAGTTCTAAATTG+AGG	+	chr8.3:29281662-29281681	MS.gene99554:intron	25.0%
	AGCACTAAACAATGACTTAA+AGG	+	chr8.3:29281196-29281215	MS.gene99554:CDS	30.0%
	ATATTGCCGTGAAAAATGAA+CGG	+	chr8.3:29281051-29281070	MS.gene99554:CDS	30.0%
	CTTAACTATAAGGATGAGAA+AGG	+	chr8.3:29281152-29281171	MS.gene99554:CDS	30.0%
	CTTTGCATTCAAATTTACCT+TGG	-	chr8.3:29281805-29281824	None:intergenic	30.0%
	GCTTGCAAAGATTTAGTTAT+CGG	+	chr8.3:29281720-29281739	MS.gene99554:intron	30.0%
	GTCAAAAAACTAGGACTATA+TGG	+	chr8.3:29281374-29281393	MS.gene99554:intron	30.0%
	TATTGAAGATGTTACTGTGA+GGG	+	chr8.3:29281013-29281032	MS.gene99554:CDS	30.0%
	TCATAATTTCAGTGGCAAAT+TGG	-	chr8.3:29280773-29280792	None:intergenic	30.0%
	TCGTTTAGTAGACATGAATA+AGG	+	chr8.3:29280884-29280903	MS.gene99554:CDS	30.0%
	TGGACAAACAAACAAAAAGT+TGG	-	chr8.3:29280988-29281007	None:intergenic	30.0%
	TTCCTTAGAATTCAAAGAAG+TGG	-	chr8.3:29282147-29282166	None:intergenic	30.0%
!	ACTTGTTAGAATCAAAGGAA+GGG	+	chr8.3:29280908-29280927	MS.gene99554:CDS	30.0%
!	ATATATCTTTTGACACCAAG+TGG	+	chr8.3:29282251-29282270	MS.gene99554:intron	30.0%
!	TATATCTTTTGACACCAAGT+GGG	+	chr8.3:29282252-29282271	MS.gene99554:intron	30.0%
!	TCTTTGAATTCTAAGGAAGT+TGG	+	chr8.3:29282149-29282168	MS.gene99554:CDS	30.0%
!!	AACTTGTTAGAATCAAAGGA+AGG	+	chr8.3:29280907-29280926	MS.gene99554:CDS	30.0%
!!	AAGGAACTTGTTAGAATCAA+AGG	+	chr8.3:29280903-29280922	MS.gene99554:CDS	30.0%
!!	GGTAAATCAGTTATTTCTGA+AGG	+	chr8.3:29282170-29282189	MS.gene99554:CDS	30.0%
!!!	ATCTTCTTTAGCGGATTTTA+CGG	-	chr8.3:29281540-29281559	None:intergenic	30.0%
!!!	TATAGTCCTAGTTTTTTGAC+GGG	-	chr8.3:29281374-29281393	None:intergenic	30.0%
	AAAACTAGGACTATATGGGT+TGG	+	chr8.3:29281379-29281398	MS.gene99554:intron	35.0%
	ACATGTGATTCATGGCAAAA+TGG	-	chr8.3:29281420-29281439	None:intergenic	35.0%
	ATGGAATGATTGAACCAAGA+TGG	+	chr8.3:29281265-29281284	MS.gene99554:intron	35.0%
	ATTGAACCAAGATGGTGAAA+GGG	+	chr8.3:29281273-29281292	MS.gene99554:intron	35.0%
	ATTGAAGATGTTACTGTGAG+GGG	+	chr8.3:29281014-29281033	MS.gene99554:CDS	35.0%
	CACCACTTCTTTGAATTCTA+AGG	+	chr8.3:29282142-29282161	MS.gene99554:CDS	35.0%
	CATGTGATTCATGGCAAAAT+GGG	-	chr8.3:29281419-29281438	None:intergenic	35.0%
	CTATTGAAGATGTTACTGTG+AGG	+	chr8.3:29281012-29281031	MS.gene99554:CDS	35.0%
	CTTGGAAGCTAAATCAACAA+GGG	+	chr8.3:29280811-29280830	MS.gene99554:CDS	35.0%
	GAGTTGAGAATTTGAACTGT+CGG	-	chr8.3:29281349-29281368	None:intergenic	35.0%
	GATTGAAACCTTCATTTGCT+TGG	+	chr8.3:29280793-29280812	MS.gene99554:CDS	35.0%
	GCAAAACAACCAAAAGAGTA+TGG	+	chr8.3:29280857-29280876	MS.gene99554:CDS	35.0%
!	AACGAAGAACCATACTCTTT+TGG	-	chr8.3:29280869-29280888	None:intergenic	35.0%
!	AAGGGTATATTACTAAGTGC+TGG	+	chr8.3:29281873-29281892	MS.gene99554:CDS	35.0%
!	ATTTTGCCATGAATCACATG+TGG	+	chr8.3:29281419-29281438	MS.gene99554:intron	35.0%
!	TTTAGCTTCCAAGCAAATGA+AGG	-	chr8.3:29280804-29280823	None:intergenic	35.0%
!!	ACTCTTTTGGTTGTTTTGCA+TGG	-	chr8.3:29280856-29280875	None:intergenic	35.0%
!!	CTCATACCGTTCATTTTTCA+CGG	-	chr8.3:29281060-29281079	None:intergenic	35.0%
!!!	ATAGTCCTAGTTTTTTGACG+GGG	-	chr8.3:29281373-29281392	None:intergenic	35.0%
	CCAAATCCACATGTGATTCA+TGG	-	chr8.3:29281428-29281447	None:intergenic	40.0%
	CCAAGCTCAAAAGTCAAAGA+TGG	+	chr8.3:29281903-29281922	MS.gene99554:CDS	40.0%
	CCATGAATCACATGTGGATT+TGG	+	chr8.3:29281425-29281444	MS.gene99554:intron	40.0%
	CTCTTCATGTCTTGATTGGT+TGG	+	chr8.3:29281081-29281100	MS.gene99554:CDS	40.0%
	CTTCATCTTGCTTCTCAAAG+TGG	+	chr8.3:29280945-29280964	MS.gene99554:CDS	40.0%
	GAGAATTTGAACTGTCGGAT+AGG	-	chr8.3:29281344-29281363	None:intergenic	40.0%
	GAGTCTCTTCATGTCTTGAT+TGG	+	chr8.3:29281077-29281096	MS.gene99554:CDS	40.0%
	GATTGAACCAAGATGGTGAA+AGG	+	chr8.3:29281272-29281291	MS.gene99554:intron	40.0%
	GCTAAACAAACGAGACATGA+CGG	-	chr8.3:29281304-29281323	None:intergenic	40.0%
	GCTTGGAAGCTAAATCAACA+AGG	+	chr8.3:29280810-29280829	MS.gene99554:CDS	40.0%
	GTCATGTCTCGTTTGTTTAG+CGG	+	chr8.3:29281303-29281322	MS.gene99554:intron	40.0%
	GTTAGAATCAAAGGAAGGGA+AGG	+	chr8.3:29280912-29280931	MS.gene99554:CDS	40.0%
	GTTTGTTTAGCGGTTTAGGT+GGG	+	chr8.3:29281313-29281332	MS.gene99554:intron	40.0%
	TACCTTGATAAACTCCACCA+GGG	-	chr8.3:29282091-29282110	None:intergenic	40.0%
	TCTCGTTTGTTTAGCGGTTT+AGG	+	chr8.3:29281309-29281328	MS.gene99554:intron	40.0%
	TTACCTTGATAAACTCCACC+AGG	-	chr8.3:29282092-29282111	None:intergenic	40.0%
	TTGAAGACAAATCGCCAGAA+AGG	+	chr8.3:29281104-29281123	MS.gene99554:CDS	40.0%
	TTTGTTTAGCGGTTTAGGTG+GGG	+	chr8.3:29281314-29281333	MS.gene99554:intron	40.0%
!	CTTTGAGAAGCAAGATGAAG+AGG	-	chr8.3:29280945-29280964	None:intergenic	40.0%
!!	CCATCTTTGACTTTTGAGCT+TGG	-	chr8.3:29281906-29281925	None:intergenic	40.0%
!!	TTTGGTTGTTTTGCATGGCA+AGG	-	chr8.3:29280851-29280870	None:intergenic	40.0%
	ACCTTGATAAACTCCACCAG+GGG	-	chr8.3:29282090-29282109	None:intergenic	45.0%
	CGTTTGTTTAGCGGTTTAGG+TGG	+	chr8.3:29281312-29281331	MS.gene99554:intron	45.0%
	GTAGGTCGTTAGGTTAAGAG+AGG	-	chr8.3:29281506-29281525	None:intergenic	45.0%
	TTTACGGTGCAGTCAGTTGT+AGG	-	chr8.3:29281524-29281543	None:intergenic	45.0%
!	TCGACTGTTGGTAAAGACCA+AGG	+	chr8.3:29281785-29281804	MS.gene99554:CDS	45.0%
!	TTTTGCATGGCAAGGTGGAT+TGG	-	chr8.3:29280843-29280862	None:intergenic	45.0%
!!	AAATCGCCAGAAAGGTGCTA+GGG	+	chr8.3:29281112-29281131	MS.gene99554:CDS	45.0%
!!	ACAAACGAGACATGACGGAT+AGG	-	chr8.3:29281299-29281318	None:intergenic	45.0%
	ACTCGCCCCGTCAAAAAACT+AGG	+	chr8.3:29281365-29281384	MS.gene99554:intron	50.0%
	CCTTGATAAACTCCACCAGG+GGG	-	chr8.3:29282089-29282108	None:intergenic	50.0%
	GATAGGCCCTTTCACCATCT+TGG	-	chr8.3:29281282-29281301	None:intergenic	50.0%
	GCAGTCAGTTGTAGGTCGTT+AGG	-	chr8.3:29281516-29281535	None:intergenic	50.0%
	TTTAGCGGTTTAGGTGGGGA+GGG	+	chr8.3:29281318-29281337	MS.gene99554:intron	50.0%
!!	AGCAGCAAGTGCCGAAATCA+AGG	+	chr8.3:29281854-29281873	MS.gene99554:CDS	50.0%
!!	CAAAATGGGTTGAGCCTGAC+GGG	-	chr8.3:29281405-29281424	None:intergenic	50.0%
!!	CAAATCGCCAGAAAGGTGCT+AGG	+	chr8.3:29281111-29281130	MS.gene99554:CDS	50.0%
!!	GCAAAATGGGTTGAGCCTGA+CGG	-	chr8.3:29281406-29281425	None:intergenic	50.0%
!!	GCAGCAAGTGCCGAAATCAA+GGG	+	chr8.3:29281855-29281874	MS.gene99554:CDS	50.0%
!!	GGTTGTTTTGCATGGCAAGG+TGG	-	chr8.3:29280848-29280867	None:intergenic	50.0%
	CAATCTGCACTTAGTCCCCC+TGG	+	chr8.3:29282071-29282090	MS.gene99554:CDS	55.0%
	CCAACTCCCTAGCACCTTTC+TGG	-	chr8.3:29281121-29281140	None:intergenic	55.0%
	CCCCCTGGTGGAGTTTATCA+AGG	+	chr8.3:29282086-29282105	MS.gene99554:CDS	55.0%
	GTTTAGCGGTTTAGGTGGGG+AGG	+	chr8.3:29281317-29281336	MS.gene99554:intron	55.0%
	TTCACAGGCGCTTCGACTGT+TGG	+	chr8.3:29281773-29281792	MS.gene99554:intron	55.0%
!!	ACTATATGGGTTGGCCCGTC+AGG	+	chr8.3:29281388-29281407	MS.gene99554:intron	55.0%
!!	CCAGAAAGGTGCTAGGGAGT+TGG	+	chr8.3:29281118-29281137	MS.gene99554:CDS	55.0%
	TCTGCACTTAGTCCCCCTGG+TGG	+	chr8.3:29282074-29282093	MS.gene99554:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	29280759	29282278	29280759	ID=MS.gene99554
chr8.3	mRNA	29280759	29282278	29280759	ID=MS.gene99554.t1;Parent=MS.gene99554
chr8.3	exon	29280759	29281217	29280759	ID=MS.gene99554.t1.exon1;Parent=MS.gene99554.t1
chr8.3	CDS	29280759	29281217	29280759	ID=cds.MS.gene99554.t1;Parent=MS.gene99554.t1
chr8.3	exon	29281780	29282191	29281780	ID=MS.gene99554.t1.exon2;Parent=MS.gene99554.t1
chr8.3	CDS	29281780	29282191	29281780	ID=cds.MS.gene99554.t1;Parent=MS.gene99554.t1
chr8.3	exon	29282271	29282278	29282271	ID=MS.gene99554.t1.exon3;Parent=MS.gene99554.t1
chr8.3	CDS	29282271	29282278	29282271	ID=cds.MS.gene99554.t1;Parent=MS.gene99554.t1

Gene Sequence

>MS.gene99554

ATGGGACATGTCCAATTTGCCACTGAAATTATGAGATTGAAACCTTCATTTGCTTGGAAGCTAAATCAACAAGGGTTCAGTCCAATCCACCTTGCCATGCAAAACAACCAAAAGAGTATGGTTCTTCGTTTAGTAGACATGAATAAGGAACTTGTTAGAATCAAAGGAAGGGAAGGTTTAACTCCTCTTCATCTTGCTTCTCAAAGTGGAGAAATTGACATTTTAGCCAACTTTTTGTTTGTTTGTCCAAATTCTATTGAAGATGTTACTGTGAGGGGTGAGACTGCACTGCATATTGCCGTGAAAAATGAACGGTATGAGTCTCTTCATGTCTTGATTGGTTGGTTGAAGACAAATCGCCAGAAAGGTGCTAGGGAGTTGGAGAAATTGATACTTAACTATAAGGATGAGAAAGGAAACACTGTTTTGCACATATCAGCACTAAACAATGACTTAAAGGTAACCTTCTATTTAGTATATATATATTTTTTTTTTGATAAATAACAATGGAATGATTGAACCAAGATGGTGAAAGGGCCTATCCGTCATGTCTCGTTTGTTTAGCGGTTTAGGTGGGGAGGGCCTATCCGACAGTTCAAATTCTCAACTCGCCCCGTCAAAAAACTAGGACTATATGGGTTGGCCCGTCAGGCTCAACCCATTTTGCCATGAATCACATGTGGATTTGGATTCTTTATTGCTGACTTTACGGTGATACAACTATCGTTAGATCATGTTATTTTTCCTCTCTTAACCTAACGACCTACAACTGACTGCACCGTAAAATCCGCTAAAGAAGATCAATTTTTCTAACATGTCCCCTTTATATCTCTTTATTTGTCCTATAATTTTTGTTGTTCATATGTCATAGTCTTTATTGGACATGAAAGAAAAGACATAACAGATATGTTAGTTCTAAATTGAGGCTGAGATGCAGTTACAGTCTTTAAAACTATTACTTGCTTGCAAAGATTTAGTTATCGGTTAAAGAAATGATCGATAACAACTATTTTATTCACAGGCGCTTCGACTGTTGGTAAAGACCAAGGTAAATTTGAATGCAAAGAATTCAGAGAACTCAACAGCATTAGACTTAGCAGCAAGTGCCGAAATCAAGGGTATATTACTAAGTGCTGGAGCAAAACCAAGCTCAAAAGTCAAAGATGGCTCCAAACTTGAAGATAAATTAAGATCAAATGTCACATTTTTGGATAAAATGTTAATTTATATACTGCGTATTAGAAAAGATATATCAGAGGAACAACGCAACGCTTTTCTAATAGTTGCGACTCTTATTGCAACTGCTACATATCAATCTGCACTTAGTCCCCCTGGTGGAGTTTATCAAGGTAATGCAGAAGATTACAATAGCAATGTGAAAAACACCACTTCTTTGAATTCTAAGGAAGTTGGTAAATCAGTTATTTCTGAAGGTGATTTTTTTACCTTATCAATTTTGAATACACTTTCACTTCTGTTATCAACCTTGACAATATATCTTTTGACACCAAGTGGGTTAA

Protein sequence

>MS.gene99554.t1

MGHVQFATEIMRLKPSFAWKLNQQGFSPIHLAMQNNQKSMVLRLVDMNKELVRIKGREGLTPLHLASQSGEIDILANFLFVCPNSIEDVTVRGETALHIAVKNERYESLHVLIGWLKTNRQKGARELEKLILNYKDEKGNTVLHISALNNDLKALRLLVKTKVNLNAKNSENSTALDLAASAEIKGILLSAGAKPSSKVKDGSKLEDKLRSNVTFLDKMLIYILRIRKDISEEQRNAFLIVATLIATATYQSALSPPGGVYQGNAEDYNSNVKNTTSLNSKEVGKSVISEVG