AlfalfaGEDB | MS.gene062662

M. sativa cultivar XinJiangDaYe / MS.gene062662

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12796.10 PF13857.9 PF13962.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062662.t1	RHN41590.1	65.2	365	123	2	1	362	1	364	1.10E-99	373.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062662.t1	Q8GYH5	52.0	306	134	5	10	306	3	304	3.6e-22	107.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062662.t1	A0A396GKQ3	65.2	365	123	2	1	362	1	364	8.0e-100	373.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene045937	MS.gene062662	PPI
MS.gene062662	MS.gene02469	PPI
MS.gene041770	MS.gene062662	PPI
MS.gene97943	MS.gene062662	PPI
MS.gene26672	MS.gene062662	PPI
MS.gene97379	MS.gene062662	PPI
MS.gene062662	MS.gene71122	PPI
MS.gene050456	MS.gene062662	PPI
MS.gene062662	MS.gene51278	PPI
MS.gene022109	MS.gene062662	PPI
MS.gene066501	MS.gene062662	PPI
MS.gene25244	MS.gene062662	PPI
MS.gene014931	MS.gene062662	PPI
MS.gene08470	MS.gene062662	PPI
MS.gene63085	MS.gene062662	PPI
MS.gene062662	MS.gene23881	PPI
MS.gene89986	MS.gene062662	PPI
MS.gene26019	MS.gene062662	PPI
MS.gene062662	MS.gene014931	PPI
MS.gene062662	MS.gene21888	PPI
MS.gene035805	MS.gene062662	PPI
MS.gene062662	MS.gene30177	PPI
MS.gene69965	MS.gene062662	PPI
MS.gene066500	MS.gene062662	PPI
MS.gene82740	MS.gene062662	PPI
MS.gene024753	MS.gene062662	PPI
MS.gene062662	MS.gene09785	PPI
MS.gene70008	MS.gene062662	PPI
MS.gene062662	MS.gene81055	PPI
MS.gene062662	MS.gene65775	PPI
MS.gene062662	MS.gene80163	PPI
MS.gene30172	MS.gene062662	PPI
MS.gene23852	MS.gene062662	PPI
MS.gene69966	MS.gene062662	PPI
MS.gene071113	MS.gene062662	PPI
MS.gene062662	MS.gene027072	PPI
MS.gene062662	MS.gene65463	PPI
MS.gene027071	MS.gene062662	PPI
MS.gene062662	MS.gene007485	PPI
MS.gene67157	MS.gene062662	PPI
MS.gene30433	MS.gene062662	PPI
MS.gene012203	MS.gene062662	PPI
MS.gene062662	MS.gene87218	PPI
MS.gene34651	MS.gene062662	PPI
MS.gene018518	MS.gene062662	PPI
MS.gene90400	MS.gene062662	PPI
MS.gene010910	MS.gene062662	PPI
MS.gene025229	MS.gene062662	PPI
MS.gene063222	MS.gene062662	PPI
MS.gene25515	MS.gene062662	PPI
MS.gene07706	MS.gene062662	PPI
MS.gene027074	MS.gene062662	PPI
MS.gene062662	MS.gene99973	PPI
MS.gene69687	MS.gene062662	PPI
MS.gene010912	MS.gene062662	PPI
MS.gene062662	MS.gene008833	PPI
MS.gene25024	MS.gene062662	PPI
MS.gene23811	MS.gene062662	PPI
MS.gene51258	MS.gene062662	PPI
MS.gene23810	MS.gene062662	PPI
MS.gene51335	MS.gene062662	PPI
MS.gene78281	MS.gene062662	PPI
MS.gene062662	MS.gene48655	PPI
MS.gene005995	MS.gene062662	PPI
MS.gene037950	MS.gene062662	PPI
MS.gene068249	MS.gene062662	PPI
MS.gene051003	MS.gene062662	PPI
MS.gene64441	MS.gene062662	PPI
MS.gene24806	MS.gene062662	PPI
MS.gene004844	MS.gene062662	PPI
MS.gene30176	MS.gene062662	PPI
MS.gene038519	MS.gene062662	PPI
MS.gene007487	MS.gene062662	PPI
MS.gene062662	MS.gene037184	PPI
MS.gene062662	MS.gene23196	PPI
MS.gene066464	MS.gene062662	PPI
MS.gene062662	MS.gene067705	PPI
MS.gene062662	MS.gene038519	PPI
MS.gene51262	MS.gene062662	PPI
MS.gene050270	MS.gene062662	PPI
MS.gene24922	MS.gene062662	PPI
MS.gene027073	MS.gene062662	PPI
MS.gene064542	MS.gene062662	PPI
MS.gene066467	MS.gene062662	PPI
MS.gene47479	MS.gene062662	PPI
MS.gene062662	MS.gene30174	PPI
MS.gene062662	MS.gene26021	PPI
MS.gene050457	MS.gene062662	PPI
MS.gene008767	MS.gene062662	PPI
MS.gene34712	MS.gene062662	PPI
MS.gene062662	MS.gene053363	PPI
MS.gene39623	MS.gene062662	PPI
MS.gene065848	MS.gene062662	PPI
MS.gene027441	MS.gene062662	PPI
MS.gene36842	MS.gene062662	PPI
MS.gene99554	MS.gene062662	PPI
MS.gene062662	MS.gene32726	PPI
MS.gene066046	MS.gene062662	PPI
MS.gene058128	MS.gene062662	PPI
MS.gene99588	MS.gene062662	PPI
MS.gene027075	MS.gene062662	PPI
MS.gene41291	MS.gene062662	PPI
MS.gene062662	MS.gene60920	PPI
MS.gene062662	MS.gene73119	PPI
MS.gene062662	MS.gene92243	PPI
MS.gene27223	MS.gene062662	PPI
MS.gene050272	MS.gene062662	PPI
MS.gene056455	MS.gene062662	PPI
MS.gene062662	MS.gene34009	PPI
MS.gene062662	MS.gene54764	PPI
MS.gene052956	MS.gene062662	PPI
MS.gene91775	MS.gene062662	PPI
MS.gene22482	MS.gene062662	PPI
MS.gene043662	MS.gene062662	PPI
MS.gene039682	MS.gene062662	PPI
MS.gene043742	MS.gene062662	PPI
MS.gene061932	MS.gene062662	PPI
MS.gene85534	MS.gene062662	PPI
MS.gene26532	MS.gene062662	PPI
MS.gene042783	MS.gene062662	PPI
MS.gene21734	MS.gene062662	PPI
MS.gene33377	MS.gene062662	PPI
MS.gene71204	MS.gene062662	PPI
MS.gene062662	MS.gene32723	PPI
MS.gene007486	MS.gene062662	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062662.t1	MTR_8g068990	72.055	365	85	3	1	362	1	351	0.0	525
MS.gene062662.t1	MTR_8g039620	72.629	369	96	2	1	364	1	369	0.0	519
MS.gene062662.t1	MTR_8g072510	71.751	354	100	0	11	364	9	362	0.0	517
MS.gene062662.t1	MTR_1g059930	73.684	361	94	1	1	360	1	361	0.0	516
MS.gene062662.t1	MTR_3g016210	62.594	401	127	4	10	387	8	408	3.75e-169	481
MS.gene062662.t1	MTR_7g021090	62.992	381	123	4	1	376	1	368	4.23e-168	476
MS.gene062662.t1	MTR_8g062410	67.227	357	108	3	10	364	8	357	2.84e-164	468
MS.gene062662.t1	MTR_8g040930	67.155	341	107	2	54	391	1	339	8.54e-157	447
MS.gene062662.t1	MTR_8g041240	67.155	341	107	2	54	391	1	339	8.54e-157	447
MS.gene062662.t1	MTR_8g073260	59.894	379	146	3	11	387	10	384	4.09e-155	445
MS.gene062662.t1	MTR_8g069880	63.352	352	127	2	12	362	7	357	3.41e-147	426
MS.gene062662.t1	MTR_7g451420	66.775	307	102	0	9	315	6	312	5.75e-143	409
MS.gene062662.t1	MTR_8g066670	59.384	357	143	2	9	364	1072	1427	4.17e-131	410
MS.gene062662.t1	MTR_8g467780	57.104	366	146	3	10	364	9	374	4.57e-129	379
MS.gene062662.t1	MTR_3g105650	55.519	308	129	2	12	312	5	311	7.30e-113	337
MS.gene062662.t1	MTR_8g073275	46.032	378	127	7	54	364	1	368	1.16e-94	291
MS.gene062662.t1	MTR_1g069110	27.171	357	225	8	15	362	21	351	6.78e-27	112
MS.gene062662.t1	MTR_7g099580	24.172	302	174	7	21	315	21	274	1.75e-22	97.8
MS.gene062662.t1	MTR_1g115575	26.879	346	183	11	47	362	169	474	6.04e-20	92.0
MS.gene062662.t1	MTR_7g099570	28.079	203	134	2	15	213	12	206	1.10e-18	88.6
MS.gene062662.t1	MTR_2g101320	27.928	222	138	4	40	251	134	343	3.62e-18	87.0
MS.gene062662.t1	MTR_4g062100	25.510	392	218	12	8	362	70	424	1.28e-17	85.1
MS.gene062662.t1	MTR_7g117620	26.117	291	173	6	47	311	119	393	1.13e-16	82.0
MS.gene062662.t1	MTR_1g032100	23.907	343	203	8	47	362	94	405	9.22e-16	79.3
MS.gene062662.t1	MTR_2g101310	28.037	214	134	4	43	247	137	339	1.89e-15	78.6
MS.gene062662.t1	MTR_2g101310	28.037	214	134	4	43	247	137	339	2.12e-15	78.2
MS.gene062662.t1	MTR_8g105260	23.684	342	205	7	47	362	101	412	2.33e-14	75.1
MS.gene062662.t1	MTR_2g096190	23.754	341	207	10	49	362	106	420	3.51e-13	71.2
MS.gene062662.t1	MTR_2g096190	24.432	176	128	2	8	180	101	274	1.75e-11	66.2
MS.gene062662.t1	MTR_7g100430	25.135	370	198	15	45	362	124	466	6.04e-13	70.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062662.t1	AT4G10720	40.331	362	195	4	11	364	4	352	6.85e-82	258
MS.gene062662.t1	AT4G10720	42.500	320	176	2	11	322	4	323	6.38e-81	254
MS.gene062662.t1	AT1G14500	35.946	370	209	3	11	371	4	354	8.55e-75	239
MS.gene062662.t1	AT5G54620	42.857	308	165	4	11	309	4	309	1.15e-72	233
MS.gene062662.t1	AT5G15500	42.949	312	166	6	12	313	6	315	1.13e-71	232
MS.gene062662.t1	AT1G14480	37.119	361	196	6	11	358	4	346	6.12e-71	229
MS.gene062662.t1	AT5G54610	39.542	306	172	5	10	306	3	304	2.20e-67	219
MS.gene062662.t1	AT1G14480	34.072	361	190	8	11	371	4	316	2.35e-54	185
MS.gene062662.t1	AT5G15500	37.915	211	119	6	113	313	1	209	3.22e-29	116
MS.gene062662.t1	AT5G51160	31.387	274	160	6	66	318	35	301	6.95e-29	117
MS.gene062662.t1	AT2G01680	25.723	346	193	8	47	362	97	408	3.64e-20	92.8
MS.gene062662.t1	AT5G54700	26.176	340	160	9	27	362	20	272	4.91e-18	86.3
MS.gene062662.t1	AT5G54700	29.924	264	129	9	104	362	23	235	6.71e-18	84.7
MS.gene062662.t1	AT1G34050	25.526	333	157	10	68	362	174	453	2.44e-17	84.3
MS.gene062662.t1	AT4G03500	26.592	267	161	7	101	364	280	514	3.76e-17	84.0
MS.gene062662.t1	AT4G03500	26.592	267	161	7	101	364	280	514	3.76e-17	84.0
MS.gene062662.t1	AT4G03500	26.592	267	161	7	101	364	303	537	4.07e-17	83.6
MS.gene062662.t1	AT4G03460	27.925	265	155	8	103	364	290	521	1.46e-16	82.0
MS.gene062662.t1	AT4G03460	27.925	265	155	8	103	364	258	489	1.52e-16	82.0
MS.gene062662.t1	AT3G12360	24.781	343	194	11	47	362	167	472	1.74e-16	81.6
MS.gene062662.t1	AT3G09550	26.844	339	190	12	8	312	143	457	2.19e-16	81.3
MS.gene062662.t1	AT3G09550	26.844	339	190	12	8	312	143	457	2.19e-16	81.3
MS.gene062662.t1	AT3G09550	26.844	339	190	12	8	312	150	464	2.23e-16	81.3
MS.gene062662.t1	AT3G12360	24.781	343	194	11	47	362	155	460	2.31e-16	81.3
MS.gene062662.t1	AT1G03670	28.899	218	134	6	104	318	279	478	3.00e-13	71.6
MS.gene062662.t1	AT4G03490	25.936	374	184	16	8	365	207	503	4.00e-13	71.6
MS.gene062662.t1	AT2G31820	25.000	340	203	11	47	362	227	538	4.56e-13	71.2
MS.gene062662.t1	AT4G03490	25.936	374	184	16	8	365	207	503	6.93e-13	70.5
MS.gene062662.t1	AT4G03490	25.936	374	184	16	8	365	197	493	7.43e-13	70.5
MS.gene062662.t1	AT4G03480	21.574	343	182	10	12	332	357	634	8.93e-13	70.5
MS.gene062662.t1	AT4G03480	21.574	343	182	10	12	332	360	637	9.88e-13	70.1
MS.gene062662.t1	AT1G05640	24.706	340	205	10	47	362	191	503	1.43e-12	69.7
MS.gene062662.t1	AT5G60070	22.314	363	246	9	2	362	102	430	1.60e-12	69.3
MS.gene062662.t1	AT1G07710	25.152	330	170	11	8	311	101	379	9.57e-12	67.0
MS.gene062662.t1	AT1G07710	25.152	330	170	11	8	311	101	379	9.57e-12	67.0
MS.gene062662.t1	AT5G02620	22.807	342	212	9	49	362	96	413	4.39e-11	64.7
MS.gene062662.t1	AT5G02620	22.807	342	212	9	49	362	96	413	4.39e-11	64.7
MS.gene062662.t1	AT5G02620	22.807	342	212	9	49	362	96	413	4.39e-11	64.7
MS.gene062662.t1	AT4G03450	21.813	353	206	9	12	359	227	514	8.06e-11	64.3
MS.gene062662.t1	AT4G03450	22.817	355	200	11	12	359	227	514	8.51e-11	64.3

Find 71 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACCTTGTTAGAGTTAA+AGG	0.117136	6.4:+46031754	MS.gene062662:CDS
TTTACATGTTGCTGCATCTA+TGG	0.217764	6.4:+46031591	MS.gene062662:CDS
GTTAATAGTTGATATGAAAA+TGG	0.256588	6.4:-46032874	None:intergenic
CAATCGGTTAAAACCATATA+TGG	0.300808	6.4:-46031464	None:intergenic
TGGGGTGGAGATAGTAGAAT+TGG	0.313441	6.4:-46032784	None:intergenic
GAATGGCATATTGAACAATA+TGG	0.324401	6.4:+46031993	MS.gene062662:CDS
ATGAACACCAATGCCATATA+TGG	0.338543	6.4:+46031451	MS.gene062662:CDS
TATGATTATGACCCCAAGTT+TGG	0.342798	6.4:+46032900	MS.gene062662:CDS
TAGCGCTGAAATATGCAAAA+TGG	0.356278	6.4:-46032031	None:intergenic
AGCGATACACCATACGCTTT+TGG	0.356876	6.4:-46031717	None:intergenic
CCTGAGAAAATCTTCACGTC+TGG	0.402859	6.4:-46032568	None:intergenic
GTCAAGTATTCAATGGATTC+CGG	0.405345	6.4:-46031856	None:intergenic
TTCATAATTTCAATGGCAAA+CGG	0.406056	6.4:-46031622	None:intergenic
TCTATACGCTGTAAAATGTA+TGG	0.410502	6.4:-46031544	None:intergenic
AGAATGCCTTGAACCAAACT+TGG	0.423579	6.4:-46032913	None:intergenic
TTACTTTCTATACTTGTGTC+CGG	0.430670	6.4:+46031837	MS.gene062662:CDS
TGATCTCTGCAGTTGTTGCT+AGG	0.433186	6.4:-46032491	None:intergenic
CCCTTCAAGTACTTGTTGGA+TGG	0.443104	6.4:+46031932	MS.gene062662:CDS
ATTTAAAACCATCATTTGCT+TGG	0.443333	6.4:+46031644	MS.gene062662:CDS
GAGGCCCTTCAAGTACTTGT+TGG	0.447990	6.4:+46031928	MS.gene062662:CDS
ATGACCCCAAGTTTGGTTCA+AGG	0.457604	6.4:+46032907	MS.gene062662:CDS
TCATAATTTCAATGGCAAAC+GGG	0.459755	6.4:-46031621	None:intergenic
TTTAACTTCCAAGCAAATGA+TGG	0.461681	6.4:-46031652	None:intergenic
GGTGCTGAAGTGGCGGAGAA+TGG	0.466183	6.4:+46031976	MS.gene062662:CDS
TGTAAAGGAGTTTCAACAAA+TGG	0.467331	6.4:-46031574	None:intergenic
AGCACAGGCACTTCTATTGT+TGG	0.470486	6.4:+46032413	MS.gene062662:intron
AATATGCAAAATGGTGTTGC+CGG	0.476164	6.4:-46032022	None:intergenic
TAACTCTAGCACGATATGTA+TGG	0.479474	6.4:-46032623	None:intergenic
GTTAGAGTTAAAGGAAGAGA+AGG	0.482284	6.4:+46031763	MS.gene062662:CDS
GCCATCCAACAAGTACTTGA+AGG	0.497429	6.4:-46031933	None:intergenic
TTACATGTTGCTGCATCTAT+GGG	0.498894	6.4:+46031592	MS.gene062662:CDS
CTCTTCCTTTAACTCTAACA+AGG	0.506203	6.4:-46031759	None:intergenic
CCTCGTAGTCAAGTATTCAA+TGG	0.507786	6.4:-46031863	None:intergenic
CTAATCTGATAAAGTCCACC+AGG	0.518575	6.4:-46032729	None:intergenic
CATGAGCTGCAGCATTCAAT+CGG	0.526264	6.4:-46031480	None:intergenic
GGTGGAGATAGTAGAATTGG+AGG	0.529413	6.4:-46032781	None:intergenic
AAGAGTATATTATTCAGTGC+TGG	0.529470	6.4:+46032513	MS.gene062662:CDS
CGGAGGAGCAACGCAACACT+TGG	0.536689	6.4:+46032652	MS.gene062662:CDS
GTTAAAACCATATATGGCAT+TGG	0.537142	6.4:-46031458	None:intergenic
CTGAGAAAATCTTCACGTCT+GGG	0.538958	6.4:-46032567	None:intergenic
GAATGCCTTGAACCAAACTT+GGG	0.542790	6.4:-46032912	None:intergenic
ATTTGACTTGCAAAATGAAG+AGG	0.544563	6.4:-46031793	None:intergenic
ATAGATGCAGCAACATGTAA+AGG	0.545089	6.4:-46031589	None:intergenic
GGACTTTATCAGATTAGTGC+TGG	0.556333	6.4:+46032735	MS.gene062662:CDS
TTTGTATAGCAAGATGGATG+GGG	0.562672	6.4:-46031690	None:intergenic
TTGAACAATATGGATGAGGC+CGG	0.573510	6.4:+46032003	MS.gene062662:CDS
ACAAAATGACCAAAAGCGTA+TGG	0.576723	6.4:+46031708	MS.gene062662:CDS
CCATCCAACAAGTACTTGAA+GGG	0.582240	6.4:-46031932	None:intergenic
CATATTGAACAATATGGATG+AGG	0.584101	6.4:+46031999	MS.gene062662:CDS
AGCGCTAAGTAGTGAGCCGC+AGG	0.585174	6.4:+46032047	MS.gene062662:CDS
TTGAATGCTGCAGCTCATGC+CGG	0.593816	6.4:+46031484	MS.gene062662:CDS
GCATCTGCGACTTCTATACC+TGG	0.598624	6.4:-46032543	None:intergenic
TACAAAGCGAGGTGCTGAAG+TGG	0.600259	6.4:+46031966	MS.gene062662:CDS
TTCAGTGCTGGATCAAAACC+AGG	0.605047	6.4:+46032525	MS.gene062662:CDS
CATCTTGAATTACCGTGTAG+AGG	0.606191	6.4:-46031519	None:intergenic
GCTTGGAAGTTAAATCCGCA+AGG	0.609839	6.4:+46031661	MS.gene062662:CDS
AAAGCGAGGTGCTGAAGTGG+CGG	0.619382	6.4:+46031969	MS.gene062662:CDS
GTAGAGGAGATCTACATCAC+CGG	0.624277	6.4:-46031503	None:intergenic
AGTTGTTGCTAGGTCTAATG+CGG	0.627293	6.4:-46032481	None:intergenic
AGTCAGAGCTGATTCATACA+TGG	0.639241	6.4:-46032703	None:intergenic
CTTAAAACAAATACAAAGCG+AGG	0.646120	6.4:+46031955	MS.gene062662:CDS
TAATTTCAATGGCAAACGGG+AGG	0.647666	6.4:-46031618	None:intergenic
TGGATGGGGCTGAATCCTTG+CGG	0.670822	6.4:-46031676	None:intergenic
TCGTGCTAGAGTTAACATAA+CGG	0.674445	6.4:+46032632	MS.gene062662:CDS
AATGCCTTGAACCAAACTTG+GGG	0.677341	6.4:-46032911	None:intergenic
CCATTGAATACTTGACTACG+AGG	0.684610	6.4:+46031863	MS.gene062662:CDS
TGATGTAGATCTCCTCTACA+CGG	0.695151	6.4:+46031507	MS.gene062662:CDS
TAATCTGATAAAGTCCACCA+GGG	0.696202	6.4:-46032728	None:intergenic
AATCTGATAAAGTCCACCAG+GGG	0.723567	6.4:-46032727	None:intergenic
ATCTGATAAAGTCCACCAGG+GGG	0.726364	6.4:-46032726	None:intergenic
TGCTAGAGTTAACATAACGG+AGG	0.735254	6.4:+46032635	MS.gene062662:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTAAATTCATAATTTCAA+TGG	-	chr6.4:46031632-46031651	None:intergenic	10.0%
!!	CCAAAAATTAATGAATAATA+CGG	-	chr6.4:46032392-46032411	None:intergenic	15.0%
!!	AATAACATGTCATCTTTATA+AGG	+	chr6.4:46032090-46032109	MS.gene062662:intron	20.0%
!!	ATAACATGTCATCTTTATAA+GGG	+	chr6.4:46032091-46032110	MS.gene062662:intron	20.0%
!!	ATAGAACACCAAATAAATAA+GGG	-	chr6.4:46032283-46032302	None:intergenic	20.0%
!!	TCATAAAAACTTACCATTTA+AGG	-	chr6.4:46032152-46032171	None:intergenic	20.0%
!!	TGTTAAAAATCAACAATATG+AGG	+	chr6.4:46031909-46031928	MS.gene062662:CDS	20.0%
!!!	CCGTATTATTCATTAATTTT+TGG	+	chr6.4:46032389-46032408	MS.gene062662:intron	20.0%
!!!	GTTAATAGTTGATATGAAAA+TGG	-	chr6.4:46032877-46032896	None:intergenic	20.0%
!!!	TGACATGTTATTTTAGTTAT+TGG	-	chr6.4:46032082-46032101	None:intergenic	20.0%
!	AGACAACGTATTAATTAGAT+AGG	+	chr6.4:46032332-46032351	MS.gene062662:intron	25.0%
!	ATGAAAAAAAAACTCATTGC+AGG	-	chr6.4:46032946-46032965	None:intergenic	25.0%
!	CATAGAACACCAAATAAATA+AGG	-	chr6.4:46032284-46032303	None:intergenic	25.0%
!	TGAAAAAAAAACTCATTGCA+GGG	-	chr6.4:46032945-46032964	None:intergenic	25.0%
!	TTCATAATTTCAATGGCAAA+CGG	-	chr6.4:46031625-46031644	None:intergenic	25.0%
!!	ATTTAAAACCATCATTTGCT+TGG	+	chr6.4:46031644-46031663	MS.gene062662:CDS	25.0%
	AAAGACCTTGTTAGAGTTAA+AGG	+	chr6.4:46031754-46031773	MS.gene062662:CDS	30.0%
	ATGAATAATACGGTTGTTAG+AGG	-	chr6.4:46032382-46032401	None:intergenic	30.0%
	ATTGTCAAAAAGTGACTTCA+TGG	+	chr6.4:46032827-46032846	MS.gene062662:CDS	30.0%
	CAACGTATTAATTAGATAGG+TGG	+	chr6.4:46032335-46032354	MS.gene062662:intron	30.0%
	CAATCGGTTAAAACCATATA+TGG	-	chr6.4:46031467-46031486	None:intergenic	30.0%
	CATATTGAACAATATGGATG+AGG	+	chr6.4:46031999-46032018	MS.gene062662:CDS	30.0%
	CTTAAAACAAATACAAAGCG+AGG	+	chr6.4:46031955-46031974	MS.gene062662:CDS	30.0%
	GAATGGCATATTGAACAATA+TGG	+	chr6.4:46031993-46032012	MS.gene062662:CDS	30.0%
	GTTAAAACCATATATGGCAT+TGG	-	chr6.4:46031461-46031480	None:intergenic	30.0%
	TCATAATTTCAATGGCAAAC+GGG	-	chr6.4:46031624-46031643	None:intergenic	30.0%
	TCTATACGCTGTAAAATGTA+TGG	-	chr6.4:46031547-46031566	None:intergenic	30.0%
	TGTAAAGGAGTTTCAACAAA+TGG	-	chr6.4:46031577-46031596	None:intergenic	30.0%
	TTACTTTCTATACTTGTGTC+CGG	+	chr6.4:46031837-46031856	MS.gene062662:CDS	30.0%
	TTATTGGATAAGATTACCTG+CGG	-	chr6.4:46032066-46032085	None:intergenic	30.0%
!	AAGAGTATATTATTCAGTGC+TGG	+	chr6.4:46032513-46032532	MS.gene062662:CDS	30.0%
!	ATTTTGTATAGCAAGATGGA+TGG	-	chr6.4:46031695-46031714	None:intergenic	30.0%
!	CTTCATTTTGCAAGTCAAAT+AGG	+	chr6.4:46031796-46031815	MS.gene062662:CDS	30.0%
!	TGGCAAAACCCTTATTTATT+TGG	+	chr6.4:46032272-46032291	MS.gene062662:intron	30.0%
!	TTTAACTTCCAAGCAAATGA+TGG	-	chr6.4:46031655-46031674	None:intergenic	30.0%
!	TTTTGTATAGCAAGATGGAT+GGG	-	chr6.4:46031694-46031713	None:intergenic	30.0%
!!	ATTTGACTTGCAAAATGAAG+AGG	-	chr6.4:46031796-46031815	None:intergenic	30.0%
!!!	ACAGATTTCCCAACATTTTT+TGG	-	chr6.4:46032807-46032826	None:intergenic	30.0%
!!!	AGATTTCCCAACATTTTTTG+GGG	-	chr6.4:46032805-46032824	None:intergenic	30.0%
!!!	CAGATTTCCCAACATTTTTT+GGG	-	chr6.4:46032806-46032825	None:intergenic	30.0%
!!!	TCATTAATTTTTGGTAGCAC+AGG	+	chr6.4:46032398-46032417	MS.gene062662:intron	30.0%
	ATAGATGCAGCAACATGTAA+AGG	-	chr6.4:46031592-46031611	None:intergenic	35.0%
	ATGAACACCAATGCCATATA+TGG	+	chr6.4:46031451-46031470	MS.gene062662:CDS	35.0%
	CTCTTCCTTTAACTCTAACA+AGG	-	chr6.4:46031762-46031781	None:intergenic	35.0%
	GTTAGAGTTAAAGGAAGAGA+AGG	+	chr6.4:46031763-46031782	MS.gene062662:CDS	35.0%
	TAACTCTAGCACGATATGTA+TGG	-	chr6.4:46032626-46032645	None:intergenic	35.0%
	TAATCTGATAAAGTCCACCA+GGG	-	chr6.4:46032731-46032750	None:intergenic	35.0%
	TACTCTTCAAGGACCTTAAA+TGG	+	chr6.4:46032136-46032155	MS.gene062662:intron	35.0%
	TATGATTATGACCCCAAGTT+TGG	+	chr6.4:46032900-46032919	MS.gene062662:CDS	35.0%
	TCGTGCTAGAGTTAACATAA+CGG	+	chr6.4:46032632-46032651	MS.gene062662:CDS	35.0%
	TTACATGTTGCTGCATCTAT+GGG	+	chr6.4:46031592-46031611	MS.gene062662:CDS	35.0%
	TTTACATGTTGCTGCATCTA+TGG	+	chr6.4:46031591-46031610	MS.gene062662:CDS	35.0%
	TTTGTATAGCAAGATGGATG+GGG	-	chr6.4:46031693-46031712	None:intergenic	35.0%
!	ACAAAATGACCAAAAGCGTA+TGG	+	chr6.4:46031708-46031727	MS.gene062662:CDS	35.0%
!	GTCAAGTATTCAATGGATTC+CGG	-	chr6.4:46031859-46031878	None:intergenic	35.0%
!	TAGCGCTGAAATATGCAAAA+TGG	-	chr6.4:46032034-46032053	None:intergenic	35.0%
!	TTTTGCAAGTCAAATAGGAG+AGG	+	chr6.4:46031801-46031820	MS.gene062662:CDS	35.0%
!!	AATATGCAAAATGGTGTTGC+CGG	-	chr6.4:46032025-46032044	None:intergenic	35.0%
!!	GGTCATTTTGTATAGCAAGA+TGG	-	chr6.4:46031699-46031718	None:intergenic	35.0%
!!	GTATGCTTAAAGAGTATTCC+AGG	+	chr6.4:46032240-46032259	MS.gene062662:intron	35.0%
	AATCTGATAAAGTCCACCAG+GGG	-	chr6.4:46032730-46032749	None:intergenic	40.0%
	AATGCCTTGAACCAAACTTG+GGG	-	chr6.4:46032914-46032933	None:intergenic	40.0%
	AGAATGCCTTGAACCAAACT+TGG	-	chr6.4:46032916-46032935	None:intergenic	40.0%
	AGTTGTTGCTAGGTCTAATG+CGG	-	chr6.4:46032484-46032503	None:intergenic	40.0%
	ATCTCCACCCCAAAAAATGT+TGG	+	chr6.4:46032795-46032814	MS.gene062662:CDS	40.0%
	CATCTTGAATTACCGTGTAG+AGG	-	chr6.4:46031522-46031541	None:intergenic	40.0%
	CCATCCAACAAGTACTTGAA+GGG	-	chr6.4:46031935-46031954	None:intergenic	40.0%
	CCATTGAATACTTGACTACG+AGG	+	chr6.4:46031863-46031882	MS.gene062662:CDS	40.0%
	CCTCGTAGTCAAGTATTCAA+TGG	-	chr6.4:46031866-46031885	None:intergenic	40.0%
	CTAATCTGATAAAGTCCACC+AGG	-	chr6.4:46032732-46032751	None:intergenic	40.0%
	CTGAGAAAATCTTCACGTCT+GGG	-	chr6.4:46032570-46032589	None:intergenic	40.0%
	GAATGCCTTGAACCAAACTT+GGG	-	chr6.4:46032915-46032934	None:intergenic	40.0%
	GGACTTTATCAGATTAGTGC+TGG	+	chr6.4:46032735-46032754	MS.gene062662:CDS	40.0%
	TAATTTCAATGGCAAACGGG+AGG	-	chr6.4:46031621-46031640	None:intergenic	40.0%
	TCTCCACCCCAAAAAATGTT+GGG	+	chr6.4:46032796-46032815	MS.gene062662:CDS	40.0%
	TGATGTAGATCTCCTCTACA+CGG	+	chr6.4:46031507-46031526	MS.gene062662:CDS	40.0%
	TGCTAGAGTTAACATAACGG+AGG	+	chr6.4:46032635-46032654	MS.gene062662:CDS	40.0%
	TTGAACAATATGGATGAGGC+CGG	+	chr6.4:46032003-46032022	MS.gene062662:CDS	40.0%
!	AGTCAGAGCTGATTCATACA+TGG	-	chr6.4:46032706-46032725	None:intergenic	40.0%
!	GTTGTCTTTCGTGTTTCTGT+AGG	-	chr6.4:46032319-46032338	None:intergenic	40.0%
!!	AGTATTCCAGGAGCATTTGT+TGG	+	chr6.4:46032252-46032271	MS.gene062662:intron	40.0%
!!!	GGTCTAATGCGGTTTTATTC+TGG	-	chr6.4:46032473-46032492	None:intergenic	40.0%
!!!	TTTCCCAACATTTTTTGGGG+TGG	-	chr6.4:46032802-46032821	None:intergenic	40.0%
	AATGCTGTCGGTACTCTTCA+AGG	+	chr6.4:46032125-46032144	MS.gene062662:intron	45.0%
	AGCACAGGCACTTCTATTGT+TGG	+	chr6.4:46032413-46032432	MS.gene062662:intron	45.0%
	ATCTGATAAAGTCCACCAGG+GGG	-	chr6.4:46032729-46032748	None:intergenic	45.0%
	CATGAGCTGCAGCATTCAAT+CGG	-	chr6.4:46031483-46031502	None:intergenic	45.0%
	CCTGAGAAAATCTTCACGTC+TGG	-	chr6.4:46032571-46032590	None:intergenic	45.0%
	GAAATGCCAACGAATGCTGT+CGG	+	chr6.4:46032113-46032132	MS.gene062662:intron	45.0%
	GCCATCCAACAAGTACTTGA+AGG	-	chr6.4:46031936-46031955	None:intergenic	45.0%
	GCTTGGAAGTTAAATCCGCA+AGG	+	chr6.4:46031661-46031680	MS.gene062662:CDS	45.0%
	GGTGGAGATAGTAGAATTGG+AGG	-	chr6.4:46032784-46032803	None:intergenic	45.0%
	GTAGAGGAGATCTACATCAC+CGG	-	chr6.4:46031506-46031525	None:intergenic	45.0%
	TGATCTCTGCAGTTGTTGCT+AGG	-	chr6.4:46032494-46032513	None:intergenic	45.0%
	TGGGGTGGAGATAGTAGAAT+TGG	-	chr6.4:46032787-46032806	None:intergenic	45.0%
!	AGCGATACACCATACGCTTT+TGG	-	chr6.4:46031720-46031739	None:intergenic	45.0%
!	ATGACCCCAAGTTTGGTTCA+AGG	+	chr6.4:46032907-46032926	MS.gene062662:CDS	45.0%
!	CCAGACGTGAAGATTTTCTC+AGG	+	chr6.4:46032568-46032587	MS.gene062662:CDS	45.0%
!	CCCTTCAAGTACTTGTTGGA+TGG	+	chr6.4:46031932-46031951	MS.gene062662:CDS	45.0%
!	GTTTTGCCAACAAATGCTCC+TGG	-	chr6.4:46032261-46032280	None:intergenic	45.0%
!	TTCAGTGCTGGATCAAAACC+AGG	+	chr6.4:46032525-46032544	MS.gene062662:CDS	45.0%
!!!	TAATGAATAATTTTTTAATT+TGG	+	chr6.4:46032218-46032237	MS.gene062662:intron	5.0%
	GAGGCCCTTCAAGTACTTGT+TGG	+	chr6.4:46031928-46031947	MS.gene062662:CDS	50.0%
	GCATCTGCGACTTCTATACC+TGG	-	chr6.4:46032546-46032565	None:intergenic	50.0%
	TTGAATGCTGCAGCTCATGC+CGG	+	chr6.4:46031484-46031503	MS.gene062662:CDS	50.0%
!!	AGAGTACCGACAGCATTCGT+TGG	-	chr6.4:46032122-46032141	None:intergenic	50.0%
!!	TACAAAGCGAGGTGCTGAAG+TGG	+	chr6.4:46031966-46031985	MS.gene062662:CDS	50.0%
	TGGATGGGGCTGAATCCTTG+CGG	-	chr6.4:46031679-46031698	None:intergenic	55.0%
!!	AAAGCGAGGTGCTGAAGTGG+CGG	+	chr6.4:46031969-46031988	MS.gene062662:CDS	55.0%
	AGCGCTAAGTAGTGAGCCGC+AGG	+	chr6.4:46032047-46032066	MS.gene062662:CDS	60.0%
	CGGAGGAGCAACGCAACACT+TGG	+	chr6.4:46032652-46032671	MS.gene062662:CDS	60.0%
!	GAATCAGCTCTGACTCCCCC+TGG	+	chr6.4:46032711-46032730	MS.gene062662:CDS	60.0%
!	GGTGCTGAAGTGGCGGAGAA+TGG	+	chr6.4:46031976-46031995	MS.gene062662:CDS	60.0%
!	TCAGCTCTGACTCCCCCTGG+TGG	+	chr6.4:46032714-46032733	MS.gene062662:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	46031451	46032989	46031451	ID=MS.gene062662
chr6.4	mRNA	46031451	46032989	46031451	ID=MS.gene062662.t1;Parent=MS.gene062662
chr6.4	exon	46031451	46032068	46031451	ID=MS.gene062662.t1.exon1;Parent=MS.gene062662.t1
chr6.4	CDS	46031451	46032068	46031451	ID=cds.MS.gene062662.t1;Parent=MS.gene062662.t1
chr6.4	exon	46032420	46032989	46032420	ID=MS.gene062662.t1.exon2;Parent=MS.gene062662.t1
chr6.4	CDS	46032420	46032989	46032420	ID=cds.MS.gene062662.t1;Parent=MS.gene062662.t1

Gene Sequence

>MS.gene062662

ATGAACACCAATGCCATATATGGTTTTAACCGATTGAATGCTGCAGCTCATGCCGGTGATGTAGATCTCCTCTACACGGTAATTCAAGATGATCCATACATTTTACAGCGTATAGATTTGATACCATTTGTTGAAACTCCTTTACATGTTGCTGCATCTATGGGACACCTCCCGTTTGCCATTGAAATTATGAATTTAAAACCATCATTTGCTTGGAAGTTAAATCCGCAAGGATTCAGCCCCATCCATCTTGCTATACAAAATGACCAAAAGCGTATGGTGTATCGCTTTGTAAACATCAATAAAGACCTTGTTAGAGTTAAAGGAAGAGAAGGCTTGACTCCTCTTCATTTTGCAAGTCAAATAGGAGAGGTTGATCTTTTATTTTACTTTCTATACTTGTGTCCGGAATCCATTGAATACTTGACTACGAGGCACGAGACTGCGCTGCATATTGCTGTTAAAAATCAACAATATGAGGCCCTTCAAGTACTTGTTGGATGGCTTAAAACAAATACAAAGCGAGGTGCTGAAGTGGCGGAGAATGGCATATTGAACAATATGGATGAGGCCGGCAACACCATTTTGCATATTTCAGCGCTAAGTAGTGAGCCGCAGGTAATCTTATCCAATAACTAAAATAACATGTCATCTTTATAAGGGAAATGCCAACGAATGCTGTCGGTACTCTTCAAGGACCTTAAATGGTAAGTTTTTATGAAAATTTGTGTGTTCAATGCATTTGAAATTAAAGTATATGATTTTTTTAATGAATAATTTTTTAATTTGGTATGCTTAAAGAGTATTCCAGGAGCATTTGTTGGCAAAACCCTTATTTATTTGGTGTTCTATGTCTTCTCTTTTTCCTACAGAAACACGAAAGACAACGTATTAATTAGATAGGTGGCATAGTTGCTAACATGAATGACCTCTAACAACCGTATTATTCATTAATTTTTGGTAGCACAGGCACTTCTATTGTTGGTAAGTACTTGTATAAATTTGAATGCAAAGAATTTCCAGAATAAAACCGCATTAGACCTAGCAACAACTGCAGAGATCAAGAGTATATTATTCAGTGCTGGATCAAAACCAGGTATAGAAGTCGCAGATGCTCCCAGACGTGAAGATTTTCTCAGGTCAAAGATTACAACTATGTTTAGATTTTCAATCCATACATATCGTGCTAGAGTTAACATAACGGAGGAGCAACGCAACACTTGGTTAATAGTTGCGACTCTTATTGCAACTACCATGTATGAATCAGCTCTGACTCCCCCTGGTGGACTTTATCAGATTAGTGCTGGTGACAATAATTTGAACATCACTTCCTCCAATTCTACTATCTCCACCCCAAAAAATGTTGGGAAATCTGTATTGTCAAAAAGTGACTTCATGGTGTTTTCAGTTTCGAATATGATTTCCATTTTCATATCAACTATTAACAATTATGATTATGACCCCAAGTTTGGTTCAAGGCATTCTTGTGTACCCTGCAATGAGTTTTTTTTTCATATGTTATGCGATTTCCATGTGTGA

Protein sequence

>MS.gene062662.t1

MNTNAIYGFNRLNAAAHAGDVDLLYTVIQDDPYILQRIDLIPFVETPLHVAASMGHLPFAIEIMNLKPSFAWKLNPQGFSPIHLAIQNDQKRMVYRFVNINKDLVRVKGREGLTPLHFASQIGEVDLLFYFLYLCPESIEYLTTRHETALHIAVKNQQYEALQVLVGWLKTNTKRGAEVAENGILNNMDEAGNTILHISALSSEPQALLLLVSTCINLNAKNFQNKTALDLATTAEIKSILFSAGSKPGIEVADAPRREDFLRSKITTMFRFSIHTYRARVNITEEQRNTWLIVATLIATTMYESALTPPGGLYQISAGDNNLNITSSNSTISTPKNVGKSVLSKSDFMVFSVSNMISIFISTINNYDYDPKFGSRHSCVPCNEFFFHMLCDFHV