Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34712.t1 | XP_004516326.1 | 48.8 | 445 | 170 | 7 | 5 | 414 | 6 | 427 | 6.20E-96 | 361.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34712.t1 | Q8GYH5 | 23.0 | 313 | 224 | 4 | 5 | 310 | 1 | 303 | 1.5e-13 | 79.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34712.t1 | A0A1S2Z7B5 | 48.8 | 445 | 170 | 7 | 5 | 414 | 6 | 427 | 4.4e-96 | 361.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34712.t1 | MTR_8g072510 | 52.381 | 441 | 164 | 4 | 6 | 411 | 7 | 436 | 2.86e-149 | 431 |
MS.gene34712.t1 | MTR_8g039620 | 53.075 | 439 | 150 | 6 | 6 | 405 | 11 | 432 | 4.21e-147 | 426 |
MS.gene34712.t1 | MTR_3g016210 | 51.345 | 446 | 156 | 7 | 6 | 399 | 7 | 443 | 1.59e-144 | 419 |
MS.gene34712.t1 | MTR_8g062410 | 51.670 | 449 | 158 | 8 | 6 | 417 | 7 | 433 | 3.95e-135 | 395 |
MS.gene34712.t1 | MTR_8g069880 | 50.000 | 446 | 167 | 9 | 7 | 414 | 5 | 432 | 7.79e-132 | 387 |
MS.gene34712.t1 | MTR_8g073260 | 48.519 | 439 | 175 | 6 | 5 | 405 | 7 | 432 | 7.98e-132 | 387 |
MS.gene34712.t1 | MTR_8g066670 | 51.002 | 449 | 170 | 8 | 1 | 411 | 1067 | 1503 | 1.57e-131 | 413 |
MS.gene34712.t1 | MTR_1g059930 | 51.559 | 417 | 180 | 6 | 7 | 422 | 10 | 405 | 4.93e-128 | 377 |
MS.gene34712.t1 | MTR_7g451420 | 58.621 | 319 | 122 | 2 | 7 | 324 | 7 | 316 | 6.93e-128 | 372 |
MS.gene34712.t1 | MTR_7g021090 | 55.429 | 350 | 137 | 6 | 1 | 348 | 1 | 333 | 4.63e-125 | 369 |
MS.gene34712.t1 | MTR_8g467780 | 47.651 | 447 | 175 | 9 | 8 | 408 | 10 | 443 | 1.60e-124 | 369 |
MS.gene34712.t1 | MTR_8g068990 | 56.609 | 348 | 122 | 6 | 7 | 350 | 10 | 332 | 3.60e-123 | 365 |
MS.gene34712.t1 | MTR_8g040930 | 50.820 | 366 | 131 | 5 | 51 | 378 | 1 | 355 | 4.08e-118 | 350 |
MS.gene34712.t1 | MTR_8g041240 | 50.820 | 366 | 131 | 5 | 51 | 378 | 1 | 355 | 4.08e-118 | 350 |
MS.gene34712.t1 | MTR_3g105650 | 38.991 | 436 | 227 | 8 | 5 | 414 | 1 | 423 | 2.84e-95 | 293 |
MS.gene34712.t1 | MTR_8g073275 | 39.269 | 438 | 153 | 11 | 51 | 388 | 1 | 425 | 7.35e-84 | 264 |
MS.gene34712.t1 | MTR_1g069110 | 26.389 | 360 | 172 | 12 | 14 | 332 | 11 | 318 | 4.95e-22 | 98.2 |
MS.gene34712.t1 | MTR_7g099580 | 25.312 | 320 | 180 | 10 | 8 | 322 | 11 | 276 | 1.21e-21 | 95.9 |
MS.gene34712.t1 | MTR_2g101320 | 29.258 | 229 | 134 | 6 | 40 | 259 | 137 | 346 | 2.47e-18 | 87.8 |
MS.gene34712.t1 | MTR_7g117620 | 26.351 | 296 | 174 | 8 | 44 | 316 | 119 | 393 | 3.47e-18 | 87.0 |
MS.gene34712.t1 | MTR_2g101310 | 27.018 | 285 | 167 | 8 | 40 | 315 | 137 | 389 | 2.57e-17 | 84.7 |
MS.gene34712.t1 | MTR_2g101310 | 27.018 | 285 | 167 | 8 | 40 | 315 | 137 | 389 | 2.78e-17 | 84.3 |
MS.gene34712.t1 | MTR_1g115575 | 27.333 | 300 | 169 | 10 | 44 | 317 | 169 | 445 | 1.99e-16 | 82.0 |
MS.gene34712.t1 | MTR_7g099570 | 29.148 | 223 | 134 | 6 | 1 | 217 | 1 | 205 | 1.67e-15 | 79.0 |
MS.gene34712.t1 | MTR_4g062100 | 24.107 | 336 | 202 | 10 | 9 | 316 | 74 | 384 | 5.20e-15 | 77.4 |
MS.gene34712.t1 | MTR_2g096190 | 22.823 | 333 | 210 | 10 | 9 | 316 | 70 | 380 | 8.48e-15 | 76.6 |
MS.gene34712.t1 | MTR_1g032100 | 23.810 | 315 | 191 | 10 | 44 | 331 | 94 | 386 | 1.04e-14 | 76.3 |
MS.gene34712.t1 | MTR_7g100390 | 22.892 | 332 | 210 | 9 | 9 | 316 | 53 | 362 | 3.80e-14 | 74.7 |
MS.gene34712.t1 | MTR_8g105260 | 22.408 | 299 | 185 | 7 | 44 | 316 | 101 | 378 | 5.21e-13 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene34712.t1 | AT4G10720 | 35.593 | 413 | 231 | 7 | 8 | 411 | 4 | 390 | 6.94e-80 | 253 |
MS.gene34712.t1 | AT4G10720 | 34.713 | 435 | 238 | 8 | 8 | 411 | 4 | 423 | 5.41e-78 | 249 |
MS.gene34712.t1 | AT5G15500 | 38.529 | 340 | 191 | 6 | 9 | 339 | 6 | 336 | 4.51e-68 | 223 |
MS.gene34712.t1 | AT5G54620 | 39.482 | 309 | 170 | 4 | 14 | 314 | 10 | 309 | 2.18e-64 | 213 |
MS.gene34712.t1 | AT1G14480 | 31.981 | 419 | 247 | 9 | 8 | 397 | 4 | 413 | 8.15e-64 | 212 |
MS.gene34712.t1 | AT1G14500 | 31.719 | 413 | 245 | 8 | 8 | 394 | 4 | 405 | 2.69e-62 | 207 |
MS.gene34712.t1 | AT5G54610 | 34.076 | 314 | 188 | 5 | 5 | 310 | 1 | 303 | 1.36e-52 | 182 |
MS.gene34712.t1 | AT1G14480 | 29.340 | 409 | 228 | 9 | 8 | 397 | 4 | 370 | 1.70e-47 | 167 |
MS.gene34712.t1 | AT5G15500 | 34.322 | 236 | 133 | 8 | 119 | 339 | 2 | 230 | 2.77e-31 | 123 |
MS.gene34712.t1 | AT5G51160 | 29.078 | 282 | 158 | 8 | 63 | 320 | 35 | 298 | 3.40e-25 | 107 |
MS.gene34712.t1 | AT4G03460 | 32.127 | 221 | 114 | 8 | 109 | 317 | 290 | 486 | 8.37e-20 | 92.4 |
MS.gene34712.t1 | AT4G03460 | 32.127 | 221 | 114 | 8 | 109 | 317 | 258 | 454 | 9.52e-20 | 92.0 |
MS.gene34712.t1 | AT4G03500 | 25.789 | 380 | 194 | 14 | 9 | 317 | 140 | 502 | 1.66e-18 | 88.6 |
MS.gene34712.t1 | AT4G03500 | 25.789 | 380 | 194 | 14 | 9 | 317 | 117 | 479 | 2.08e-18 | 88.2 |
MS.gene34712.t1 | AT4G03500 | 25.789 | 380 | 194 | 14 | 9 | 317 | 117 | 479 | 2.08e-18 | 88.2 |
MS.gene34712.t1 | AT1G10340 | 23.153 | 406 | 204 | 11 | 9 | 320 | 41 | 432 | 4.76e-15 | 77.8 |
MS.gene34712.t1 | AT2G31820 | 25.926 | 297 | 174 | 11 | 44 | 316 | 227 | 501 | 7.49e-15 | 77.0 |
MS.gene34712.t1 | AT1G10340 | 22.886 | 402 | 206 | 11 | 9 | 320 | 41 | 428 | 1.08e-14 | 76.6 |
MS.gene34712.t1 | AT2G01680 | 23.492 | 315 | 194 | 8 | 44 | 332 | 97 | 390 | 3.35e-14 | 74.7 |
MS.gene34712.t1 | AT5G02620 | 24.484 | 339 | 200 | 11 | 9 | 316 | 60 | 373 | 4.92e-13 | 71.2 |
MS.gene34712.t1 | AT5G02620 | 24.484 | 339 | 200 | 11 | 9 | 316 | 60 | 373 | 4.92e-13 | 71.2 |
MS.gene34712.t1 | AT5G02620 | 24.484 | 339 | 200 | 11 | 9 | 316 | 60 | 373 | 4.92e-13 | 71.2 |
MS.gene34712.t1 | AT5G54700 | 24.891 | 229 | 131 | 8 | 110 | 332 | 23 | 216 | 1.64e-12 | 68.9 |
MS.gene34712.t1 | AT3G12360 | 24.919 | 309 | 178 | 10 | 44 | 327 | 155 | 434 | 1.92e-12 | 69.3 |
MS.gene34712.t1 | AT3G12360 | 25.243 | 309 | 177 | 11 | 44 | 327 | 167 | 446 | 2.13e-12 | 69.3 |
MS.gene34712.t1 | AT4G03490 | 25.767 | 326 | 206 | 11 | 9 | 328 | 182 | 477 | 2.43e-12 | 69.3 |
MS.gene34712.t1 | AT4G03490 | 25.767 | 326 | 206 | 11 | 9 | 328 | 182 | 477 | 2.50e-12 | 69.3 |
MS.gene34712.t1 | AT4G03490 | 25.767 | 326 | 206 | 11 | 9 | 328 | 172 | 467 | 2.73e-12 | 68.9 |
MS.gene34712.t1 | AT5G54710 | 22.678 | 366 | 177 | 11 | 43 | 320 | 149 | 496 | 3.51e-12 | 68.9 |
MS.gene34712.t1 | AT5G54710 | 22.678 | 366 | 177 | 11 | 43 | 320 | 104 | 451 | 3.53e-12 | 68.6 |
MS.gene34712.t1 | AT4G03450 | 26.415 | 212 | 128 | 6 | 117 | 317 | 290 | 484 | 3.53e-12 | 68.9 |
MS.gene34712.t1 | AT2G24600 | 26.724 | 232 | 130 | 8 | 121 | 320 | 209 | 432 | 4.23e-12 | 68.6 |
MS.gene34712.t1 | AT2G24600 | 26.724 | 232 | 130 | 8 | 121 | 320 | 209 | 432 | 4.23e-12 | 68.6 |
MS.gene34712.t1 | AT2G24600 | 26.724 | 232 | 130 | 8 | 121 | 320 | 209 | 432 | 5.09e-12 | 68.2 |
MS.gene34712.t1 | AT2G24600 | 26.724 | 232 | 130 | 8 | 121 | 320 | 209 | 432 | 5.09e-12 | 68.2 |
MS.gene34712.t1 | AT4G03450 | 26.415 | 212 | 128 | 6 | 117 | 317 | 290 | 484 | 5.78e-12 | 68.2 |
MS.gene34712.t1 | AT1G03670 | 26.749 | 243 | 134 | 9 | 96 | 323 | 265 | 478 | 7.18e-12 | 67.8 |
MS.gene34712.t1 | AT1G34050 | 25.869 | 259 | 149 | 8 | 87 | 320 | 183 | 423 | 7.66e-12 | 67.8 |
Find 87 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACCTGTGGTTTACTATTT+TGG | 0.072821 | 8.1:-45493359 | None:intergenic |
AAAGACCTTGTTAAAATTAA+AGG | 0.147671 | 8.1:+45493066 | MS.gene34712:CDS |
ACCGATTTCCCAACATTTCC+TGG | 0.288159 | 8.1:-45494055 | None:intergenic |
AGTGTTAGTAATAGTGGAAT+TGG | 0.322380 | 8.1:-45494029 | None:intergenic |
CCCTTGACGTACTTGTTATC+TGG | 0.324222 | 8.1:+45493241 | MS.gene34712:CDS |
GTAAAGTATTCAATGGATTC+TGG | 0.324939 | 8.1:-45493165 | None:intergenic |
CCCAGGAAATGTTGGGAAAT+CGG | 0.356880 | 8.1:+45494054 | MS.gene34712:CDS |
GATATTGTTGTCAGTGAGTT+TGG | 0.364953 | 8.1:-45494410 | None:intergenic |
TTGCATATCGCGGCACCTAT+GGG | 0.373544 | 8.1:+45492877 | MS.gene34712:CDS |
CTTCATTTAGCAGTTCAAAC+TGG | 0.392355 | 8.1:+45493105 | MS.gene34712:CDS |
AGCACAGATGATTCGATTGC+TGG | 0.398557 | 8.1:+45493658 | MS.gene34712:intron |
TCTATACTGTCGAAAACATA+TGG | 0.411439 | 8.1:-45492829 | None:intergenic |
TTTGCATATCGCGGCACCTA+TGG | 0.412637 | 8.1:+45492876 | MS.gene34712:CDS |
TCATGACCTCGGTGGCAAAC+TGG | 0.415559 | 8.1:-45492906 | None:intergenic |
GGGACTCACTATTGATTGAT+AGG | 0.433798 | 8.1:-45493951 | None:intergenic |
TCCTTTAGGACGTGGTGGAT+TGG | 0.448987 | 8.1:-45493015 | None:intergenic |
AGCGAAGCACAATATCCTTT+AGG | 0.450965 | 8.1:-45493029 | None:intergenic |
AAATTTGAAGGCAAAGAACT+TGG | 0.458384 | 8.1:+45493694 | MS.gene34712:CDS |
CCACAGGAATGAGCACTAGA+AGG | 0.461141 | 8.1:-45494185 | None:intergenic |
TTTAGCTTCAAAGCAAATGA+AGG | 0.466186 | 8.1:-45492937 | None:intergenic |
TGGGTTAGTGTTAGTAATAG+TGG | 0.470505 | 8.1:-45494035 | None:intergenic |
TAATAGAATTGACATGTGTA+GGG | 0.471549 | 8.1:-45494251 | None:intergenic |
GTTAAAATTAAAGGAAGGGA+TGG | 0.475747 | 8.1:+45493075 | MS.gene34712:CDS |
AACACTAACCCAGGAAATGT+TGG | 0.488025 | 8.1:+45494046 | MS.gene34712:CDS |
ACTCAAAATTGCAGCTGAAA+CGG | 0.491051 | 8.1:+45492768 | MS.gene34712:CDS |
TCCAATCCACCACGTCCTAA+AGG | 0.494895 | 8.1:+45493014 | MS.gene34712:CDS |
ATAATAGAATTGACATGTGT+AGG | 0.495239 | 8.1:-45494252 | None:intergenic |
AAAGACTAGGATAAATTTGA+AGG | 0.495732 | 8.1:+45493682 | MS.gene34712:CDS |
GTTAGTAATAGTGGAATTGG+AGG | 0.496517 | 8.1:-45494026 | None:intergenic |
CATCTTGAATTACATCATAT+AGG | 0.499877 | 8.1:-45492804 | None:intergenic |
ACACTAACCCAGGAAATGTT+GGG | 0.501975 | 8.1:+45494047 | MS.gene34712:CDS |
TAAGAAGTTCAGTAAACCAT+TGG | 0.502462 | 8.1:+45494365 | MS.gene34712:CDS |
GGATTGGACTGAACCCTTGT+GGG | 0.505540 | 8.1:-45492960 | None:intergenic |
CCTCGCAGTAAAGTATTCAA+TGG | 0.507786 | 8.1:-45493172 | None:intergenic |
TGAGAGCACTGGTAATTTGT+TGG | 0.514165 | 8.1:-45493793 | None:intergenic |
CCGATTTCCCAACATTTCCT+GGG | 0.520863 | 8.1:-45494054 | None:intergenic |
GAGAGGATATTGTTGAGTGC+TGG | 0.528373 | 8.1:+45493758 | MS.gene34712:CDS |
TACCACTTTATGCAAAATTG+TGG | 0.533079 | 8.1:-45493843 | None:intergenic |
TTAAAATTAAAGGAAGGGAT+GGG | 0.534477 | 8.1:+45493076 | MS.gene34712:CDS |
CCTTCTAGTGCTCATTCCTG+TGG | 0.535114 | 8.1:+45494185 | MS.gene34712:CDS |
GTGGTTTGAGTTGCATCCAA+TGG | 0.535242 | 8.1:-45494381 | None:intergenic |
TGAATACTTTACTGCGAGGT+GGG | 0.538236 | 8.1:+45493176 | MS.gene34712:CDS |
TTGAAGGCAAAGAACTTGGA+TGG | 0.546932 | 8.1:+45493698 | MS.gene34712:CDS |
ACCTTGTTAAAATTAAAGGA+AGG | 0.547796 | 8.1:+45493070 | MS.gene34712:CDS |
GATGCAACTCAAACCACTGT+TGG | 0.552949 | 8.1:+45494387 | MS.gene34712:CDS |
AATACTTGATCAGAAAGATA+AGG | 0.559012 | 8.1:+45493308 | MS.gene34712:CDS |
CCTTGTTAAAATTAAAGGAA+GGG | 0.566852 | 8.1:+45493071 | MS.gene34712:CDS |
CAGAGGAGCAACGTAACACT+TGG | 0.571270 | 8.1:+45493897 | MS.gene34712:CDS |
AGCCCAAAATAGTAAACCAC+AGG | 0.573290 | 8.1:+45493356 | MS.gene34712:CDS |
ATGTACAAGTGTGAGAGCAC+TGG | 0.573656 | 8.1:-45493804 | None:intergenic |
TCAGTGAGTTTGGCCAACAG+TGG | 0.578013 | 8.1:-45494400 | None:intergenic |
AGGCGCGAAGAAGCTCGAAA+AGG | 0.582511 | 8.1:+45493284 | MS.gene34712:CDS |
TGCATATCGCGGCACCTATG+GGG | 0.582696 | 8.1:+45492878 | MS.gene34712:CDS |
TTAGCCTGATAAACCCCACC+AGG | 0.584511 | 8.1:-45493974 | None:intergenic |
TGTACTCTTTACTTCAACTG+AGG | 0.586770 | 8.1:+45494334 | MS.gene34712:CDS |
CAGCCAATGTAGACATTGAG+AGG | 0.589633 | 8.1:+45493741 | MS.gene34712:CDS |
GCAAACTGGAGATGCCCCAT+AGG | 0.589965 | 8.1:-45492892 | None:intergenic |
TATCCTCTCAATGTCTACAT+TGG | 0.592485 | 8.1:-45493744 | None:intergenic |
TTCGATTGCTGGTAAAGACT+AGG | 0.599690 | 8.1:+45493669 | MS.gene34712:CDS |
TCTGGCTCAAAAGAAATGCT+CGG | 0.600834 | 8.1:+45493259 | MS.gene34712:CDS |
CCAGATAACAAGTACGTCAA+GGG | 0.601245 | 8.1:-45493241 | None:intergenic |
TTTAGCAGTTCAAACTGGAG+AGG | 0.602088 | 8.1:+45493110 | MS.gene34712:CDS |
CTCAAAAGAAATGCTCGGAG+AGG | 0.605054 | 8.1:+45493264 | MS.gene34712:CDS |
GCCAGATAACAAGTACGTCA+AGG | 0.607692 | 8.1:-45493242 | None:intergenic |
TTGAATACTTTACTGCGAGG+TGG | 0.613509 | 8.1:+45493175 | MS.gene34712:CDS |
CAACCGACAAAGAAAACCAC+AGG | 0.619988 | 8.1:-45494201 | None:intergenic |
TGGATTGGACTGAACCCTTG+TGG | 0.620221 | 8.1:-45492961 | None:intergenic |
ATAGGTGCCGCGATATGCAA+AGG | 0.621074 | 8.1:-45492874 | None:intergenic |
CTTGATCAGAAAGATAAGGA+AGG | 0.621926 | 8.1:+45493312 | MS.gene34712:CDS |
GCACAATATCCTTTAGGACG+TGG | 0.624176 | 8.1:-45493023 | None:intergenic |
GCTTTGAAGCTAAACCCACA+AGG | 0.628698 | 8.1:+45492946 | MS.gene34712:CDS |
GCAAACTCCTTTGCATATCG+CGG | 0.631031 | 8.1:+45492867 | MS.gene34712:CDS |
AGGTTTCAAATTCATGACCT+CGG | 0.634384 | 8.1:-45492917 | None:intergenic |
GCATCTCCAGTTTGCCACCG+AGG | 0.634427 | 8.1:+45492900 | MS.gene34712:CDS |
CTTTGAAGCTAAACCCACAA+GGG | 0.637735 | 8.1:+45492947 | MS.gene34712:CDS |
TGGCAAAACTGCTTTAGACA+TGG | 0.649895 | 8.1:+45493718 | MS.gene34712:CDS |
ACTATTACTAACACTAACCC+AGG | 0.652310 | 8.1:+45494037 | MS.gene34712:CDS |
ACTCACTATTGATTGATAGG+TGG | 0.658549 | 8.1:-45493948 | None:intergenic |
CAATATCCTTTAGGACGTGG+TGG | 0.659602 | 8.1:-45493020 | None:intergenic |
AATAGAATTGACATGTGTAG+GGG | 0.666557 | 8.1:-45494250 | None:intergenic |
TGGATTCTGGACAAGCAAAG+AGG | 0.671895 | 8.1:-45493152 | None:intergenic |
CCATTGAATACTTTACTGCG+AGG | 0.673693 | 8.1:+45493172 | MS.gene34712:CDS |
AGCCTGATAAACCCCACCAG+GGG | 0.679379 | 8.1:-45493972 | None:intergenic |
TAGCCTGATAAACCCCACCA+GGG | 0.691993 | 8.1:-45493973 | None:intergenic |
TTTCAAATTCATGACCTCGG+TGG | 0.700665 | 8.1:-45492914 | None:intergenic |
GCCTGATAAACCCCACCAGG+GGG | 0.705998 | 8.1:-45493971 | None:intergenic |
CACTAAAAGAGATATAACAG+AGG | 0.729718 | 8.1:+45493880 | MS.gene34712:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAATTAAAGTTACATT+GGG | + | chr8.1:45493543-45493562 | MS.gene34712:intron | 10.0% |
!! | AACATTAGAATAAAATTATT+AGG | + | chr8.1:45493485-45493504 | MS.gene34712:intron | 10.0% |
!! | ACATTAGAATAAAATTATTA+GGG | + | chr8.1:45493486-45493505 | MS.gene34712:intron | 10.0% |
!! | TAAAATAATTAAAGTTACAT+TGG | + | chr8.1:45493542-45493561 | MS.gene34712:intron | 10.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8.1:45493433-45493452 | None:intergenic | 100.0% |
!! | TTGTTCATTTATAATTTACT+TGG | + | chr8.1:45493634-45493653 | MS.gene34712:intron | 15.0% |
!!! | AAGAAAAATATTTGAAACTA+AGG | - | chr8.1:45493582-45493601 | None:intergenic | 15.0% |
!!! | AGAAAAATATTTGAAACTAA+GGG | - | chr8.1:45493581-45493600 | None:intergenic | 15.0% |
!! | AAAGACCTTGTTAAAATTAA+AGG | + | chr8.1:45493066-45493085 | MS.gene34712:CDS | 20.0% |
!! | ATAATTGATACATAAAGGAA+AGG | - | chr8.1:45494123-45494142 | None:intergenic | 20.0% |
!! | TTGCTATAATTGATACATAA+AGG | - | chr8.1:45494128-45494147 | None:intergenic | 20.0% |
!!! | GTTAATTCTTTTTGCTATTT+CGG | + | chr8.1:45494311-45494330 | MS.gene34712:CDS | 20.0% |
! | AAAGACTAGGATAAATTTGA+AGG | + | chr8.1:45493682-45493701 | MS.gene34712:CDS | 25.0% |
! | AAAGTTACATTGGGAATAAA+AGG | + | chr8.1:45493552-45493571 | MS.gene34712:intron | 25.0% |
! | AATACTTGATCAGAAAGATA+AGG | + | chr8.1:45493308-45493327 | MS.gene34712:CDS | 25.0% |
! | ACCTTGTTAAAATTAAAGGA+AGG | + | chr8.1:45493070-45493089 | MS.gene34712:CDS | 25.0% |
! | ATAATAGAATTGACATGTGT+AGG | - | chr8.1:45494255-45494274 | None:intergenic | 25.0% |
! | CATCTTGAATTACATCATAT+AGG | - | chr8.1:45492807-45492826 | None:intergenic | 25.0% |
! | CCTTGTTAAAATTAAAGGAA+GGG | + | chr8.1:45493071-45493090 | MS.gene34712:CDS | 25.0% |
! | TAATAGAATTGACATGTGTA+GGG | - | chr8.1:45494254-45494273 | None:intergenic | 25.0% |
! | TGTTAAAAATGAACAATACG+AGG | + | chr8.1:45493218-45493237 | MS.gene34712:CDS | 25.0% |
! | TTAAAATTAAAGGAAGGGAT+GGG | + | chr8.1:45493076-45493095 | MS.gene34712:CDS | 25.0% |
!!! | ATCATGATCCGTTTTTAATT+GGG | - | chr8.1:45493465-45493484 | None:intergenic | 25.0% |
!!! | GTGATTTTAATCATATAGTG+AGG | - | chr8.1:45493385-45493404 | None:intergenic | 25.0% |
!!! | TATCATGATCCGTTTTTAAT+TGG | - | chr8.1:45493466-45493485 | None:intergenic | 25.0% |
AAATTTGAAGGCAAAGAACT+TGG | + | chr8.1:45493694-45493713 | MS.gene34712:CDS | 30.0% | |
AATAGAATTGACATGTGTAG+GGG | - | chr8.1:45494253-45494272 | None:intergenic | 30.0% | |
CACTAAAAGAGATATAACAG+AGG | + | chr8.1:45493880-45493899 | MS.gene34712:CDS | 30.0% | |
GAAATCGGTATTGTCAAAAA+AGG | + | chr8.1:45494069-45494088 | MS.gene34712:intron | 30.0% | |
GTTAAAATTAAAGGAAGGGA+TGG | + | chr8.1:45493075-45493094 | MS.gene34712:CDS | 30.0% | |
TAAGAAGTTCAGTAAACCAT+TGG | + | chr8.1:45494365-45494384 | MS.gene34712:CDS | 30.0% | |
TACCACTTTATGCAAAATTG+TGG | - | chr8.1:45493846-45493865 | None:intergenic | 30.0% | |
TCTATACTGTCGAAAACATA+TGG | - | chr8.1:45492832-45492851 | None:intergenic | 30.0% | |
! | AGTGTTAGTAATAGTGGAAT+TGG | - | chr8.1:45494032-45494051 | None:intergenic | 30.0% |
! | GTAAAGTATTCAATGGATTC+TGG | - | chr8.1:45493168-45493187 | None:intergenic | 30.0% |
! | TACCACAATTTTGCATAAAG+TGG | + | chr8.1:45493841-45493860 | MS.gene34712:CDS | 30.0% |
! | TACCTGTGGTTTACTATTTT+GGG | - | chr8.1:45493361-45493380 | None:intergenic | 30.0% |
! | TTACCTGTGGTTTACTATTT+TGG | - | chr8.1:45493362-45493381 | None:intergenic | 30.0% |
! | TTTAGCTTCAAAGCAAATGA+AGG | - | chr8.1:45492940-45492959 | None:intergenic | 30.0% |
! | TTTTGCATAAAGTGGTAACT+TGG | + | chr8.1:45493849-45493868 | MS.gene34712:CDS | 30.0% |
!! | CCCTTCCTTTAATTTTAACA+AGG | - | chr8.1:45493074-45493093 | None:intergenic | 30.0% |
!! | TCATGATCCGTTTTTAATTG+GGG | - | chr8.1:45493464-45493483 | None:intergenic | 30.0% |
ACTATTACTAACACTAACCC+AGG | + | chr8.1:45494037-45494056 | MS.gene34712:CDS | 35.0% | |
ACTCAAAATTGCAGCTGAAA+CGG | + | chr8.1:45492768-45492787 | MS.gene34712:CDS | 35.0% | |
AGGTTTCAAATTCATGACCT+CGG | - | chr8.1:45492920-45492939 | None:intergenic | 35.0% | |
CTTCATTTAGCAGTTCAAAC+TGG | + | chr8.1:45493105-45493124 | MS.gene34712:CDS | 35.0% | |
CTTGATCAGAAAGATAAGGA+AGG | + | chr8.1:45493312-45493331 | MS.gene34712:CDS | 35.0% | |
TATCCTCTCAATGTCTACAT+TGG | - | chr8.1:45493747-45493766 | None:intergenic | 35.0% | |
TGTACTCTTTACTTCAACTG+AGG | + | chr8.1:45494334-45494353 | MS.gene34712:CDS | 35.0% | |
! | ACTCACTATTGATTGATAGG+TGG | - | chr8.1:45493951-45493970 | None:intergenic | 35.0% |
! | ATTCCTGTGGTTTTCTTTGT+CGG | + | chr8.1:45494198-45494217 | MS.gene34712:CDS | 35.0% |
! | GTTAGTAATAGTGGAATTGG+AGG | - | chr8.1:45494029-45494048 | None:intergenic | 35.0% |
! | TTTTTCATAGCAAGGTGGAT+TGG | - | chr8.1:45492979-45492998 | None:intergenic | 35.0% |
!! | ATGATCCGTTTTTAATTGGG+GGG | - | chr8.1:45493462-45493481 | None:intergenic | 35.0% |
!! | CATGATCCGTTTTTAATTGG+GGG | - | chr8.1:45493463-45493482 | None:intergenic | 35.0% |
!! | GTTTACTATTTTGGGCTGAA+AGG | - | chr8.1:45493353-45493372 | None:intergenic | 35.0% |
!! | TGGGTTAGTGTTAGTAATAG+TGG | - | chr8.1:45494038-45494057 | None:intergenic | 35.0% |
!! | TTTCAGCTGCAATTTTGAGT+TGG | - | chr8.1:45492768-45492787 | None:intergenic | 35.0% |
!!! | ACTGCAACTTTTTCATAGCA+AGG | - | chr8.1:45492987-45493006 | None:intergenic | 35.0% |
AACACTAACCCAGGAAATGT+TGG | + | chr8.1:45494046-45494065 | MS.gene34712:CDS | 40.0% | |
ACACTAACCCAGGAAATGTT+GGG | + | chr8.1:45494047-45494066 | MS.gene34712:CDS | 40.0% | |
AGCCCAAAATAGTAAACCAC+AGG | + | chr8.1:45493356-45493375 | MS.gene34712:CDS | 40.0% | |
AGCGAAGCACAATATCCTTT+AGG | - | chr8.1:45493032-45493051 | None:intergenic | 40.0% | |
CCAGATAACAAGTACGTCAA+GGG | - | chr8.1:45493244-45493263 | None:intergenic | 40.0% | |
CCATTGAATACTTTACTGCG+AGG | + | chr8.1:45493172-45493191 | MS.gene34712:CDS | 40.0% | |
TCATATAGTGAGGTTACCTG+TGG | - | chr8.1:45493375-45493394 | None:intergenic | 40.0% | |
TGAATACTTTACTGCGAGGT+GGG | + | chr8.1:45493176-45493195 | MS.gene34712:CDS | 40.0% | |
TTCGATTGCTGGTAAAGACT+AGG | + | chr8.1:45493669-45493688 | MS.gene34712:CDS | 40.0% | |
TTGAAGGCAAAGAACTTGGA+TGG | + | chr8.1:45493698-45493717 | MS.gene34712:CDS | 40.0% | |
TTGAATACTTTACTGCGAGG+TGG | + | chr8.1:45493175-45493194 | MS.gene34712:CDS | 40.0% | |
TTTAGCAGTTCAAACTGGAG+AGG | + | chr8.1:45493110-45493129 | MS.gene34712:CDS | 40.0% | |
TTTCAAATTCATGACCTCGG+TGG | - | chr8.1:45492917-45492936 | None:intergenic | 40.0% | |
! | CCTCGCAGTAAAGTATTCAA+TGG | - | chr8.1:45493175-45493194 | None:intergenic | 40.0% |
! | GGGACTCACTATTGATTGAT+AGG | - | chr8.1:45493954-45493973 | None:intergenic | 40.0% |
! | TCTGGCTCAAAAGAAATGCT+CGG | + | chr8.1:45493259-45493278 | MS.gene34712:CDS | 40.0% |
! | TGGCAAAACTGCTTTAGACA+TGG | + | chr8.1:45493718-45493737 | MS.gene34712:CDS | 40.0% |
!! | CTTTGAAGCTAAACCCACAA+GGG | + | chr8.1:45492947-45492966 | MS.gene34712:CDS | 40.0% |
!! | TGAGAGCACTGGTAATTTGT+TGG | - | chr8.1:45493796-45493815 | None:intergenic | 40.0% |
!! | TGATCCGTTTTTAATTGGGG+GGG | - | chr8.1:45493461-45493480 | None:intergenic | 40.0% |
!!! | GCAACTTTTTCATAGCAAGG+TGG | - | chr8.1:45492984-45493003 | None:intergenic | 40.0% |
AGCACAGATGATTCGATTGC+TGG | + | chr8.1:45493658-45493677 | MS.gene34712:intron | 45.0% | |
CAACCGACAAAGAAAACCAC+AGG | - | chr8.1:45494204-45494223 | None:intergenic | 45.0% | |
CAGCCAATGTAGACATTGAG+AGG | + | chr8.1:45493741-45493760 | MS.gene34712:CDS | 45.0% | |
CCCAGGAAATGTTGGGAAAT+CGG | + | chr8.1:45494054-45494073 | MS.gene34712:CDS | 45.0% | |
CCGATTTCCCAACATTTCCT+GGG | - | chr8.1:45494057-45494076 | None:intergenic | 45.0% | |
CTCAAAAGAAATGCTCGGAG+AGG | + | chr8.1:45493264-45493283 | MS.gene34712:CDS | 45.0% | |
GAGAGGATATTGTTGAGTGC+TGG | + | chr8.1:45493758-45493777 | MS.gene34712:CDS | 45.0% | |
GATGCAACTCAAACCACTGT+TGG | + | chr8.1:45494387-45494406 | MS.gene34712:CDS | 45.0% | |
GCAAACTCCTTTGCATATCG+CGG | + | chr8.1:45492867-45492886 | MS.gene34712:CDS | 45.0% | |
GCCAGATAACAAGTACGTCA+AGG | - | chr8.1:45493245-45493264 | None:intergenic | 45.0% | |
TGGATTCTGGACAAGCAAAG+AGG | - | chr8.1:45493155-45493174 | None:intergenic | 45.0% | |
! | ACCGATTTCCCAACATTTCC+TGG | - | chr8.1:45494058-45494077 | None:intergenic | 45.0% |
! | ATGTACAAGTGTGAGAGCAC+TGG | - | chr8.1:45493807-45493826 | None:intergenic | 45.0% |
!! | ATCCGTTTTTAATTGGGGGG+GGG | - | chr8.1:45493459-45493478 | None:intergenic | 45.0% |
!! | CAATATCCTTTAGGACGTGG+TGG | - | chr8.1:45493023-45493042 | None:intergenic | 45.0% |
!! | CCCTTGACGTACTTGTTATC+TGG | + | chr8.1:45493241-45493260 | MS.gene34712:CDS | 45.0% |
!! | GATCCGTTTTTAATTGGGGG+GGG | - | chr8.1:45493460-45493479 | None:intergenic | 45.0% |
!! | GCACAATATCCTTTAGGACG+TGG | - | chr8.1:45493026-45493045 | None:intergenic | 45.0% |
!! | GCTTTGAAGCTAAACCCACA+AGG | + | chr8.1:45492946-45492965 | MS.gene34712:CDS | 45.0% |
!! | GTGGTTTGAGTTGCATCCAA+TGG | - | chr8.1:45494384-45494403 | None:intergenic | 45.0% |
CAATCAATAGTGAGTCCCCC+TGG | + | chr8.1:45493956-45493975 | MS.gene34712:CDS | 50.0% | |
CAGAGGAGCAACGTAACACT+TGG | + | chr8.1:45493897-45493916 | MS.gene34712:CDS | 50.0% | |
CCACAGGAATGAGCACTAGA+AGG | - | chr8.1:45494188-45494207 | None:intergenic | 50.0% | |
CCTTCTAGTGCTCATTCCTG+TGG | + | chr8.1:45494185-45494204 | MS.gene34712:CDS | 50.0% | |
GGATTGGACTGAACCCTTGT+GGG | - | chr8.1:45492963-45492982 | None:intergenic | 50.0% | |
TAGCCTGATAAACCCCACCA+GGG | - | chr8.1:45493976-45493995 | None:intergenic | 50.0% | |
TCAGTGAGTTTGGCCAACAG+TGG | - | chr8.1:45494403-45494422 | None:intergenic | 50.0% | |
TCCAATCCACCACGTCCTAA+AGG | + | chr8.1:45493014-45493033 | MS.gene34712:CDS | 50.0% | |
TTAGCCTGATAAACCCCACC+AGG | - | chr8.1:45493977-45493996 | None:intergenic | 50.0% | |
TTGCATATCGCGGCACCTAT+GGG | + | chr8.1:45492877-45492896 | MS.gene34712:CDS | 50.0% | |
TTTGCATATCGCGGCACCTA+TGG | + | chr8.1:45492876-45492895 | MS.gene34712:CDS | 50.0% | |
! | ATAGGTGCCGCGATATGCAA+AGG | - | chr8.1:45492877-45492896 | None:intergenic | 50.0% |
! | TGGATTGGACTGAACCCTTG+TGG | - | chr8.1:45492964-45492983 | None:intergenic | 50.0% |
!! | TCCGTTTTTAATTGGGGGGG+GGG | - | chr8.1:45493458-45493477 | None:intergenic | 50.0% |
!! | TCCTTTAGGACGTGGTGGAT+TGG | - | chr8.1:45493018-45493037 | None:intergenic | 50.0% |
AATAGTGAGTCCCCCTGGTG+GGG | + | chr8.1:45493961-45493980 | MS.gene34712:CDS | 55.0% | |
AGCACTAGAAGGCCCTCGAA+CGG | - | chr8.1:45494177-45494196 | None:intergenic | 55.0% | |
AGCCTGATAAACCCCACCAG+GGG | - | chr8.1:45493975-45493994 | None:intergenic | 55.0% | |
AGGCGCGAAGAAGCTCGAAA+AGG | + | chr8.1:45493284-45493303 | MS.gene34712:CDS | 55.0% | |
CAATAGTGAGTCCCCCTGGT+GGG | + | chr8.1:45493960-45493979 | MS.gene34712:CDS | 55.0% | |
CCCCCCCCCCCAATTAAAAA+CGG | + | chr8.1:45493454-45493473 | MS.gene34712:intron | 55.0% | |
GCAAACTGGAGATGCCCCAT+AGG | - | chr8.1:45492895-45492914 | None:intergenic | 55.0% | |
TCAATAGTGAGTCCCCCTGG+TGG | + | chr8.1:45493959-45493978 | MS.gene34712:CDS | 55.0% | |
TCATGACCTCGGTGGCAAAC+TGG | - | chr8.1:45492909-45492928 | None:intergenic | 55.0% | |
TGCATATCGCGGCACCTATG+GGG | + | chr8.1:45492878-45492897 | MS.gene34712:CDS | 55.0% | |
!! | CCGTTTTTAATTGGGGGGGG+GGG | - | chr8.1:45493457-45493476 | None:intergenic | 55.0% |
!! | CGTTTTTAATTGGGGGGGGG+GGG | - | chr8.1:45493456-45493475 | None:intergenic | 55.0% |
!! | GTTTTTAATTGGGGGGGGGG+GGG | - | chr8.1:45493455-45493474 | None:intergenic | 55.0% |
!! | TTTTTAATTGGGGGGGGGGG+GGG | - | chr8.1:45493454-45493473 | None:intergenic | 55.0% |
GCACTAGAAGGCCCTCGAAC+GGG | - | chr8.1:45494176-45494195 | None:intergenic | 60.0% | |
GCATCTCCAGTTTGCCACCG+AGG | + | chr8.1:45492900-45492919 | MS.gene34712:CDS | 60.0% | |
GCCTGATAAACCCCACCAGG+GGG | - | chr8.1:45493974-45493993 | None:intergenic | 60.0% | |
TCCCCCTGGTGGGGTTTATC+AGG | + | chr8.1:45493970-45493989 | MS.gene34712:CDS | 60.0% | |
!! | TTTTAATTGGGGGGGGGGGG+GGG | - | chr8.1:45493453-45493472 | None:intergenic | 60.0% |
GTCCCAAGTCGCCCGTTCGA+GGG | + | chr8.1:45494162-45494181 | MS.gene34712:intron | 65.0% | |
TTTAATTGGGGGGGGGGGGG+GGG | - | chr8.1:45493452-45493471 | None:intergenic | 65.0% | |
AGGCCCTCGAACGGGCGACT+TGG | - | chr8.1:45494168-45494187 | None:intergenic | 70.0% | |
CGTCCCAAGTCGCCCGTTCG+AGG | + | chr8.1:45494161-45494180 | MS.gene34712:intron | 70.0% | |
GGCCCTCGAACGGGCGACTT+GGG | - | chr8.1:45494167-45494186 | None:intergenic | 70.0% | |
TTAATTGGGGGGGGGGGGGG+GGG | - | chr8.1:45493451-45493470 | None:intergenic | 70.0% | |
TAATTGGGGGGGGGGGGGGG+GGG | - | chr8.1:45493450-45493469 | None:intergenic | 75.0% | |
! | AATTGGGGGGGGGGGGGGGG+GGG | - | chr8.1:45493449-45493468 | None:intergenic | 80.0% |
! | ATTGGGGGGGGGGGGGGGGG+GGG | - | chr8.1:45493448-45493467 | None:intergenic | 85.0% |
! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr8.1:45493447-45493466 | None:intergenic | 90.0% |
! | GGGGGGGGGGGGGGGGGGAC+AGG | - | chr8.1:45493431-45493450 | None:intergenic | 95.0% |
! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr8.1:45493446-45493465 | None:intergenic | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 45492745 | 45494422 | 45492745 | ID=MS.gene34712 |
chr8.1 | mRNA | 45492745 | 45494422 | 45492745 | ID=MS.gene34712.t1;Parent=MS.gene34712 |
chr8.1 | exon | 45492745 | 45493377 | 45492745 | ID=MS.gene34712.t1.exon1;Parent=MS.gene34712.t1 |
chr8.1 | CDS | 45492745 | 45493377 | 45492745 | ID=cds.MS.gene34712.t1;Parent=MS.gene34712.t1 |
chr8.1 | exon | 45493665 | 45494075 | 45493665 | ID=MS.gene34712.t1.exon2;Parent=MS.gene34712.t1 |
chr8.1 | CDS | 45493665 | 45494075 | 45493665 | ID=cds.MS.gene34712.t1;Parent=MS.gene34712.t1 |
chr8.1 | exon | 45494183 | 45494422 | 45494183 | ID=MS.gene34712.t1.exon3;Parent=MS.gene34712.t1 |
chr8.1 | CDS | 45494183 | 45494422 | 45494183 | ID=cds.MS.gene34712.t1;Parent=MS.gene34712.t1 |
Gene Sequence |
Protein sequence |