AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34712


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34712.t1 MTR_8g072510 52.381 441 164 4 6 411 7 436 2.86e-149 431
MS.gene34712.t1 MTR_8g039620 53.075 439 150 6 6 405 11 432 4.21e-147 426
MS.gene34712.t1 MTR_3g016210 51.345 446 156 7 6 399 7 443 1.59e-144 419
MS.gene34712.t1 MTR_8g062410 51.670 449 158 8 6 417 7 433 3.95e-135 395
MS.gene34712.t1 MTR_8g069880 50.000 446 167 9 7 414 5 432 7.79e-132 387
MS.gene34712.t1 MTR_8g073260 48.519 439 175 6 5 405 7 432 7.98e-132 387
MS.gene34712.t1 MTR_8g066670 51.002 449 170 8 1 411 1067 1503 1.57e-131 413
MS.gene34712.t1 MTR_1g059930 51.559 417 180 6 7 422 10 405 4.93e-128 377
MS.gene34712.t1 MTR_7g451420 58.621 319 122 2 7 324 7 316 6.93e-128 372
MS.gene34712.t1 MTR_7g021090 55.429 350 137 6 1 348 1 333 4.63e-125 369
MS.gene34712.t1 MTR_8g467780 47.651 447 175 9 8 408 10 443 1.60e-124 369
MS.gene34712.t1 MTR_8g068990 56.609 348 122 6 7 350 10 332 3.60e-123 365
MS.gene34712.t1 MTR_8g040930 50.820 366 131 5 51 378 1 355 4.08e-118 350
MS.gene34712.t1 MTR_8g041240 50.820 366 131 5 51 378 1 355 4.08e-118 350
MS.gene34712.t1 MTR_3g105650 38.991 436 227 8 5 414 1 423 2.84e-95 293
MS.gene34712.t1 MTR_8g073275 39.269 438 153 11 51 388 1 425 7.35e-84 264
MS.gene34712.t1 MTR_1g069110 26.389 360 172 12 14 332 11 318 4.95e-22 98.2
MS.gene34712.t1 MTR_7g099580 25.312 320 180 10 8 322 11 276 1.21e-21 95.9
MS.gene34712.t1 MTR_2g101320 29.258 229 134 6 40 259 137 346 2.47e-18 87.8
MS.gene34712.t1 MTR_7g117620 26.351 296 174 8 44 316 119 393 3.47e-18 87.0
MS.gene34712.t1 MTR_2g101310 27.018 285 167 8 40 315 137 389 2.57e-17 84.7
MS.gene34712.t1 MTR_2g101310 27.018 285 167 8 40 315 137 389 2.78e-17 84.3
MS.gene34712.t1 MTR_1g115575 27.333 300 169 10 44 317 169 445 1.99e-16 82.0
MS.gene34712.t1 MTR_7g099570 29.148 223 134 6 1 217 1 205 1.67e-15 79.0
MS.gene34712.t1 MTR_4g062100 24.107 336 202 10 9 316 74 384 5.20e-15 77.4
MS.gene34712.t1 MTR_2g096190 22.823 333 210 10 9 316 70 380 8.48e-15 76.6
MS.gene34712.t1 MTR_1g032100 23.810 315 191 10 44 331 94 386 1.04e-14 76.3
MS.gene34712.t1 MTR_7g100390 22.892 332 210 9 9 316 53 362 3.80e-14 74.7
MS.gene34712.t1 MTR_8g105260 22.408 299 185 7 44 316 101 378 5.21e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34712.t1 AT4G10720 35.593 413 231 7 8 411 4 390 6.94e-80 253
MS.gene34712.t1 AT4G10720 34.713 435 238 8 8 411 4 423 5.41e-78 249
MS.gene34712.t1 AT5G15500 38.529 340 191 6 9 339 6 336 4.51e-68 223
MS.gene34712.t1 AT5G54620 39.482 309 170 4 14 314 10 309 2.18e-64 213
MS.gene34712.t1 AT1G14480 31.981 419 247 9 8 397 4 413 8.15e-64 212
MS.gene34712.t1 AT1G14500 31.719 413 245 8 8 394 4 405 2.69e-62 207
MS.gene34712.t1 AT5G54610 34.076 314 188 5 5 310 1 303 1.36e-52 182
MS.gene34712.t1 AT1G14480 29.340 409 228 9 8 397 4 370 1.70e-47 167
MS.gene34712.t1 AT5G15500 34.322 236 133 8 119 339 2 230 2.77e-31 123
MS.gene34712.t1 AT5G51160 29.078 282 158 8 63 320 35 298 3.40e-25 107
MS.gene34712.t1 AT4G03460 32.127 221 114 8 109 317 290 486 8.37e-20 92.4
MS.gene34712.t1 AT4G03460 32.127 221 114 8 109 317 258 454 9.52e-20 92.0
MS.gene34712.t1 AT4G03500 25.789 380 194 14 9 317 140 502 1.66e-18 88.6
MS.gene34712.t1 AT4G03500 25.789 380 194 14 9 317 117 479 2.08e-18 88.2
MS.gene34712.t1 AT4G03500 25.789 380 194 14 9 317 117 479 2.08e-18 88.2
MS.gene34712.t1 AT1G10340 23.153 406 204 11 9 320 41 432 4.76e-15 77.8
MS.gene34712.t1 AT2G31820 25.926 297 174 11 44 316 227 501 7.49e-15 77.0
MS.gene34712.t1 AT1G10340 22.886 402 206 11 9 320 41 428 1.08e-14 76.6
MS.gene34712.t1 AT2G01680 23.492 315 194 8 44 332 97 390 3.35e-14 74.7
MS.gene34712.t1 AT5G02620 24.484 339 200 11 9 316 60 373 4.92e-13 71.2
MS.gene34712.t1 AT5G02620 24.484 339 200 11 9 316 60 373 4.92e-13 71.2
MS.gene34712.t1 AT5G02620 24.484 339 200 11 9 316 60 373 4.92e-13 71.2
MS.gene34712.t1 AT5G54700 24.891 229 131 8 110 332 23 216 1.64e-12 68.9
MS.gene34712.t1 AT3G12360 24.919 309 178 10 44 327 155 434 1.92e-12 69.3
MS.gene34712.t1 AT3G12360 25.243 309 177 11 44 327 167 446 2.13e-12 69.3
MS.gene34712.t1 AT4G03490 25.767 326 206 11 9 328 182 477 2.43e-12 69.3
MS.gene34712.t1 AT4G03490 25.767 326 206 11 9 328 182 477 2.50e-12 69.3
MS.gene34712.t1 AT4G03490 25.767 326 206 11 9 328 172 467 2.73e-12 68.9
MS.gene34712.t1 AT5G54710 22.678 366 177 11 43 320 149 496 3.51e-12 68.9
MS.gene34712.t1 AT5G54710 22.678 366 177 11 43 320 104 451 3.53e-12 68.6
MS.gene34712.t1 AT4G03450 26.415 212 128 6 117 317 290 484 3.53e-12 68.9
MS.gene34712.t1 AT2G24600 26.724 232 130 8 121 320 209 432 4.23e-12 68.6
MS.gene34712.t1 AT2G24600 26.724 232 130 8 121 320 209 432 4.23e-12 68.6
MS.gene34712.t1 AT2G24600 26.724 232 130 8 121 320 209 432 5.09e-12 68.2
MS.gene34712.t1 AT2G24600 26.724 232 130 8 121 320 209 432 5.09e-12 68.2
MS.gene34712.t1 AT4G03450 26.415 212 128 6 117 317 290 484 5.78e-12 68.2
MS.gene34712.t1 AT1G03670 26.749 243 134 9 96 323 265 478 7.18e-12 67.8
MS.gene34712.t1 AT1G34050 25.869 259 149 8 87 320 183 423 7.66e-12 67.8

Find 87 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTGTGGTTTACTATTT+TGG 0.072821 8.1:-45493359 None:intergenic
AAAGACCTTGTTAAAATTAA+AGG 0.147671 8.1:+45493066 MS.gene34712:CDS
ACCGATTTCCCAACATTTCC+TGG 0.288159 8.1:-45494055 None:intergenic
AGTGTTAGTAATAGTGGAAT+TGG 0.322380 8.1:-45494029 None:intergenic
CCCTTGACGTACTTGTTATC+TGG 0.324222 8.1:+45493241 MS.gene34712:CDS
GTAAAGTATTCAATGGATTC+TGG 0.324939 8.1:-45493165 None:intergenic
CCCAGGAAATGTTGGGAAAT+CGG 0.356880 8.1:+45494054 MS.gene34712:CDS
GATATTGTTGTCAGTGAGTT+TGG 0.364953 8.1:-45494410 None:intergenic
TTGCATATCGCGGCACCTAT+GGG 0.373544 8.1:+45492877 MS.gene34712:CDS
CTTCATTTAGCAGTTCAAAC+TGG 0.392355 8.1:+45493105 MS.gene34712:CDS
AGCACAGATGATTCGATTGC+TGG 0.398557 8.1:+45493658 MS.gene34712:intron
TCTATACTGTCGAAAACATA+TGG 0.411439 8.1:-45492829 None:intergenic
TTTGCATATCGCGGCACCTA+TGG 0.412637 8.1:+45492876 MS.gene34712:CDS
TCATGACCTCGGTGGCAAAC+TGG 0.415559 8.1:-45492906 None:intergenic
GGGACTCACTATTGATTGAT+AGG 0.433798 8.1:-45493951 None:intergenic
TCCTTTAGGACGTGGTGGAT+TGG 0.448987 8.1:-45493015 None:intergenic
AGCGAAGCACAATATCCTTT+AGG 0.450965 8.1:-45493029 None:intergenic
AAATTTGAAGGCAAAGAACT+TGG 0.458384 8.1:+45493694 MS.gene34712:CDS
CCACAGGAATGAGCACTAGA+AGG 0.461141 8.1:-45494185 None:intergenic
TTTAGCTTCAAAGCAAATGA+AGG 0.466186 8.1:-45492937 None:intergenic
TGGGTTAGTGTTAGTAATAG+TGG 0.470505 8.1:-45494035 None:intergenic
TAATAGAATTGACATGTGTA+GGG 0.471549 8.1:-45494251 None:intergenic
GTTAAAATTAAAGGAAGGGA+TGG 0.475747 8.1:+45493075 MS.gene34712:CDS
AACACTAACCCAGGAAATGT+TGG 0.488025 8.1:+45494046 MS.gene34712:CDS
ACTCAAAATTGCAGCTGAAA+CGG 0.491051 8.1:+45492768 MS.gene34712:CDS
TCCAATCCACCACGTCCTAA+AGG 0.494895 8.1:+45493014 MS.gene34712:CDS
ATAATAGAATTGACATGTGT+AGG 0.495239 8.1:-45494252 None:intergenic
AAAGACTAGGATAAATTTGA+AGG 0.495732 8.1:+45493682 MS.gene34712:CDS
GTTAGTAATAGTGGAATTGG+AGG 0.496517 8.1:-45494026 None:intergenic
CATCTTGAATTACATCATAT+AGG 0.499877 8.1:-45492804 None:intergenic
ACACTAACCCAGGAAATGTT+GGG 0.501975 8.1:+45494047 MS.gene34712:CDS
TAAGAAGTTCAGTAAACCAT+TGG 0.502462 8.1:+45494365 MS.gene34712:CDS
GGATTGGACTGAACCCTTGT+GGG 0.505540 8.1:-45492960 None:intergenic
CCTCGCAGTAAAGTATTCAA+TGG 0.507786 8.1:-45493172 None:intergenic
TGAGAGCACTGGTAATTTGT+TGG 0.514165 8.1:-45493793 None:intergenic
CCGATTTCCCAACATTTCCT+GGG 0.520863 8.1:-45494054 None:intergenic
GAGAGGATATTGTTGAGTGC+TGG 0.528373 8.1:+45493758 MS.gene34712:CDS
TACCACTTTATGCAAAATTG+TGG 0.533079 8.1:-45493843 None:intergenic
TTAAAATTAAAGGAAGGGAT+GGG 0.534477 8.1:+45493076 MS.gene34712:CDS
CCTTCTAGTGCTCATTCCTG+TGG 0.535114 8.1:+45494185 MS.gene34712:CDS
GTGGTTTGAGTTGCATCCAA+TGG 0.535242 8.1:-45494381 None:intergenic
TGAATACTTTACTGCGAGGT+GGG 0.538236 8.1:+45493176 MS.gene34712:CDS
TTGAAGGCAAAGAACTTGGA+TGG 0.546932 8.1:+45493698 MS.gene34712:CDS
ACCTTGTTAAAATTAAAGGA+AGG 0.547796 8.1:+45493070 MS.gene34712:CDS
GATGCAACTCAAACCACTGT+TGG 0.552949 8.1:+45494387 MS.gene34712:CDS
AATACTTGATCAGAAAGATA+AGG 0.559012 8.1:+45493308 MS.gene34712:CDS
CCTTGTTAAAATTAAAGGAA+GGG 0.566852 8.1:+45493071 MS.gene34712:CDS
CAGAGGAGCAACGTAACACT+TGG 0.571270 8.1:+45493897 MS.gene34712:CDS
AGCCCAAAATAGTAAACCAC+AGG 0.573290 8.1:+45493356 MS.gene34712:CDS
ATGTACAAGTGTGAGAGCAC+TGG 0.573656 8.1:-45493804 None:intergenic
TCAGTGAGTTTGGCCAACAG+TGG 0.578013 8.1:-45494400 None:intergenic
AGGCGCGAAGAAGCTCGAAA+AGG 0.582511 8.1:+45493284 MS.gene34712:CDS
TGCATATCGCGGCACCTATG+GGG 0.582696 8.1:+45492878 MS.gene34712:CDS
TTAGCCTGATAAACCCCACC+AGG 0.584511 8.1:-45493974 None:intergenic
TGTACTCTTTACTTCAACTG+AGG 0.586770 8.1:+45494334 MS.gene34712:CDS
CAGCCAATGTAGACATTGAG+AGG 0.589633 8.1:+45493741 MS.gene34712:CDS
GCAAACTGGAGATGCCCCAT+AGG 0.589965 8.1:-45492892 None:intergenic
TATCCTCTCAATGTCTACAT+TGG 0.592485 8.1:-45493744 None:intergenic
TTCGATTGCTGGTAAAGACT+AGG 0.599690 8.1:+45493669 MS.gene34712:CDS
TCTGGCTCAAAAGAAATGCT+CGG 0.600834 8.1:+45493259 MS.gene34712:CDS
CCAGATAACAAGTACGTCAA+GGG 0.601245 8.1:-45493241 None:intergenic
TTTAGCAGTTCAAACTGGAG+AGG 0.602088 8.1:+45493110 MS.gene34712:CDS
CTCAAAAGAAATGCTCGGAG+AGG 0.605054 8.1:+45493264 MS.gene34712:CDS
GCCAGATAACAAGTACGTCA+AGG 0.607692 8.1:-45493242 None:intergenic
TTGAATACTTTACTGCGAGG+TGG 0.613509 8.1:+45493175 MS.gene34712:CDS
CAACCGACAAAGAAAACCAC+AGG 0.619988 8.1:-45494201 None:intergenic
TGGATTGGACTGAACCCTTG+TGG 0.620221 8.1:-45492961 None:intergenic
ATAGGTGCCGCGATATGCAA+AGG 0.621074 8.1:-45492874 None:intergenic
CTTGATCAGAAAGATAAGGA+AGG 0.621926 8.1:+45493312 MS.gene34712:CDS
GCACAATATCCTTTAGGACG+TGG 0.624176 8.1:-45493023 None:intergenic
GCTTTGAAGCTAAACCCACA+AGG 0.628698 8.1:+45492946 MS.gene34712:CDS
GCAAACTCCTTTGCATATCG+CGG 0.631031 8.1:+45492867 MS.gene34712:CDS
AGGTTTCAAATTCATGACCT+CGG 0.634384 8.1:-45492917 None:intergenic
GCATCTCCAGTTTGCCACCG+AGG 0.634427 8.1:+45492900 MS.gene34712:CDS
CTTTGAAGCTAAACCCACAA+GGG 0.637735 8.1:+45492947 MS.gene34712:CDS
TGGCAAAACTGCTTTAGACA+TGG 0.649895 8.1:+45493718 MS.gene34712:CDS
ACTATTACTAACACTAACCC+AGG 0.652310 8.1:+45494037 MS.gene34712:CDS
ACTCACTATTGATTGATAGG+TGG 0.658549 8.1:-45493948 None:intergenic
CAATATCCTTTAGGACGTGG+TGG 0.659602 8.1:-45493020 None:intergenic
AATAGAATTGACATGTGTAG+GGG 0.666557 8.1:-45494250 None:intergenic
TGGATTCTGGACAAGCAAAG+AGG 0.671895 8.1:-45493152 None:intergenic
CCATTGAATACTTTACTGCG+AGG 0.673693 8.1:+45493172 MS.gene34712:CDS
AGCCTGATAAACCCCACCAG+GGG 0.679379 8.1:-45493972 None:intergenic
TAGCCTGATAAACCCCACCA+GGG 0.691993 8.1:-45493973 None:intergenic
TTTCAAATTCATGACCTCGG+TGG 0.700665 8.1:-45492914 None:intergenic
GCCTGATAAACCCCACCAGG+GGG 0.705998 8.1:-45493971 None:intergenic
CACTAAAAGAGATATAACAG+AGG 0.729718 8.1:+45493880 MS.gene34712:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATTAAAGTTACATT+GGG + chr8.1:45493543-45493562 MS.gene34712:intron 10.0%
!! AACATTAGAATAAAATTATT+AGG + chr8.1:45493485-45493504 MS.gene34712:intron 10.0%
!! ACATTAGAATAAAATTATTA+GGG + chr8.1:45493486-45493505 MS.gene34712:intron 10.0%
!! TAAAATAATTAAAGTTACAT+TGG + chr8.1:45493542-45493561 MS.gene34712:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8.1:45493433-45493452 None:intergenic 100.0%
!! TTGTTCATTTATAATTTACT+TGG + chr8.1:45493634-45493653 MS.gene34712:intron 15.0%
!!! AAGAAAAATATTTGAAACTA+AGG - chr8.1:45493582-45493601 None:intergenic 15.0%
!!! AGAAAAATATTTGAAACTAA+GGG - chr8.1:45493581-45493600 None:intergenic 15.0%
!! AAAGACCTTGTTAAAATTAA+AGG + chr8.1:45493066-45493085 MS.gene34712:CDS 20.0%
!! ATAATTGATACATAAAGGAA+AGG - chr8.1:45494123-45494142 None:intergenic 20.0%
!! TTGCTATAATTGATACATAA+AGG - chr8.1:45494128-45494147 None:intergenic 20.0%
!!! GTTAATTCTTTTTGCTATTT+CGG + chr8.1:45494311-45494330 MS.gene34712:CDS 20.0%
! AAAGACTAGGATAAATTTGA+AGG + chr8.1:45493682-45493701 MS.gene34712:CDS 25.0%
! AAAGTTACATTGGGAATAAA+AGG + chr8.1:45493552-45493571 MS.gene34712:intron 25.0%
! AATACTTGATCAGAAAGATA+AGG + chr8.1:45493308-45493327 MS.gene34712:CDS 25.0%
! ACCTTGTTAAAATTAAAGGA+AGG + chr8.1:45493070-45493089 MS.gene34712:CDS 25.0%
! ATAATAGAATTGACATGTGT+AGG - chr8.1:45494255-45494274 None:intergenic 25.0%
! CATCTTGAATTACATCATAT+AGG - chr8.1:45492807-45492826 None:intergenic 25.0%
! CCTTGTTAAAATTAAAGGAA+GGG + chr8.1:45493071-45493090 MS.gene34712:CDS 25.0%
! TAATAGAATTGACATGTGTA+GGG - chr8.1:45494254-45494273 None:intergenic 25.0%
! TGTTAAAAATGAACAATACG+AGG + chr8.1:45493218-45493237 MS.gene34712:CDS 25.0%
! TTAAAATTAAAGGAAGGGAT+GGG + chr8.1:45493076-45493095 MS.gene34712:CDS 25.0%
!!! ATCATGATCCGTTTTTAATT+GGG - chr8.1:45493465-45493484 None:intergenic 25.0%
!!! GTGATTTTAATCATATAGTG+AGG - chr8.1:45493385-45493404 None:intergenic 25.0%
!!! TATCATGATCCGTTTTTAAT+TGG - chr8.1:45493466-45493485 None:intergenic 25.0%
AAATTTGAAGGCAAAGAACT+TGG + chr8.1:45493694-45493713 MS.gene34712:CDS 30.0%
AATAGAATTGACATGTGTAG+GGG - chr8.1:45494253-45494272 None:intergenic 30.0%
CACTAAAAGAGATATAACAG+AGG + chr8.1:45493880-45493899 MS.gene34712:CDS 30.0%
GAAATCGGTATTGTCAAAAA+AGG + chr8.1:45494069-45494088 MS.gene34712:intron 30.0%
GTTAAAATTAAAGGAAGGGA+TGG + chr8.1:45493075-45493094 MS.gene34712:CDS 30.0%
TAAGAAGTTCAGTAAACCAT+TGG + chr8.1:45494365-45494384 MS.gene34712:CDS 30.0%
TACCACTTTATGCAAAATTG+TGG - chr8.1:45493846-45493865 None:intergenic 30.0%
TCTATACTGTCGAAAACATA+TGG - chr8.1:45492832-45492851 None:intergenic 30.0%
! AGTGTTAGTAATAGTGGAAT+TGG - chr8.1:45494032-45494051 None:intergenic 30.0%
! GTAAAGTATTCAATGGATTC+TGG - chr8.1:45493168-45493187 None:intergenic 30.0%
! TACCACAATTTTGCATAAAG+TGG + chr8.1:45493841-45493860 MS.gene34712:CDS 30.0%
! TACCTGTGGTTTACTATTTT+GGG - chr8.1:45493361-45493380 None:intergenic 30.0%
! TTACCTGTGGTTTACTATTT+TGG - chr8.1:45493362-45493381 None:intergenic 30.0%
! TTTAGCTTCAAAGCAAATGA+AGG - chr8.1:45492940-45492959 None:intergenic 30.0%
! TTTTGCATAAAGTGGTAACT+TGG + chr8.1:45493849-45493868 MS.gene34712:CDS 30.0%
!! CCCTTCCTTTAATTTTAACA+AGG - chr8.1:45493074-45493093 None:intergenic 30.0%
!! TCATGATCCGTTTTTAATTG+GGG - chr8.1:45493464-45493483 None:intergenic 30.0%
ACTATTACTAACACTAACCC+AGG + chr8.1:45494037-45494056 MS.gene34712:CDS 35.0%
ACTCAAAATTGCAGCTGAAA+CGG + chr8.1:45492768-45492787 MS.gene34712:CDS 35.0%
AGGTTTCAAATTCATGACCT+CGG - chr8.1:45492920-45492939 None:intergenic 35.0%
CTTCATTTAGCAGTTCAAAC+TGG + chr8.1:45493105-45493124 MS.gene34712:CDS 35.0%
CTTGATCAGAAAGATAAGGA+AGG + chr8.1:45493312-45493331 MS.gene34712:CDS 35.0%
TATCCTCTCAATGTCTACAT+TGG - chr8.1:45493747-45493766 None:intergenic 35.0%
TGTACTCTTTACTTCAACTG+AGG + chr8.1:45494334-45494353 MS.gene34712:CDS 35.0%
! ACTCACTATTGATTGATAGG+TGG - chr8.1:45493951-45493970 None:intergenic 35.0%
! ATTCCTGTGGTTTTCTTTGT+CGG + chr8.1:45494198-45494217 MS.gene34712:CDS 35.0%
! GTTAGTAATAGTGGAATTGG+AGG - chr8.1:45494029-45494048 None:intergenic 35.0%
! TTTTTCATAGCAAGGTGGAT+TGG - chr8.1:45492979-45492998 None:intergenic 35.0%
!! ATGATCCGTTTTTAATTGGG+GGG - chr8.1:45493462-45493481 None:intergenic 35.0%
!! CATGATCCGTTTTTAATTGG+GGG - chr8.1:45493463-45493482 None:intergenic 35.0%
!! GTTTACTATTTTGGGCTGAA+AGG - chr8.1:45493353-45493372 None:intergenic 35.0%
!! TGGGTTAGTGTTAGTAATAG+TGG - chr8.1:45494038-45494057 None:intergenic 35.0%
!! TTTCAGCTGCAATTTTGAGT+TGG - chr8.1:45492768-45492787 None:intergenic 35.0%
!!! ACTGCAACTTTTTCATAGCA+AGG - chr8.1:45492987-45493006 None:intergenic 35.0%
AACACTAACCCAGGAAATGT+TGG + chr8.1:45494046-45494065 MS.gene34712:CDS 40.0%
ACACTAACCCAGGAAATGTT+GGG + chr8.1:45494047-45494066 MS.gene34712:CDS 40.0%
AGCCCAAAATAGTAAACCAC+AGG + chr8.1:45493356-45493375 MS.gene34712:CDS 40.0%
AGCGAAGCACAATATCCTTT+AGG - chr8.1:45493032-45493051 None:intergenic 40.0%
CCAGATAACAAGTACGTCAA+GGG - chr8.1:45493244-45493263 None:intergenic 40.0%
CCATTGAATACTTTACTGCG+AGG + chr8.1:45493172-45493191 MS.gene34712:CDS 40.0%
TCATATAGTGAGGTTACCTG+TGG - chr8.1:45493375-45493394 None:intergenic 40.0%
TGAATACTTTACTGCGAGGT+GGG + chr8.1:45493176-45493195 MS.gene34712:CDS 40.0%
TTCGATTGCTGGTAAAGACT+AGG + chr8.1:45493669-45493688 MS.gene34712:CDS 40.0%
TTGAAGGCAAAGAACTTGGA+TGG + chr8.1:45493698-45493717 MS.gene34712:CDS 40.0%
TTGAATACTTTACTGCGAGG+TGG + chr8.1:45493175-45493194 MS.gene34712:CDS 40.0%
TTTAGCAGTTCAAACTGGAG+AGG + chr8.1:45493110-45493129 MS.gene34712:CDS 40.0%
TTTCAAATTCATGACCTCGG+TGG - chr8.1:45492917-45492936 None:intergenic 40.0%
! CCTCGCAGTAAAGTATTCAA+TGG - chr8.1:45493175-45493194 None:intergenic 40.0%
! GGGACTCACTATTGATTGAT+AGG - chr8.1:45493954-45493973 None:intergenic 40.0%
! TCTGGCTCAAAAGAAATGCT+CGG + chr8.1:45493259-45493278 MS.gene34712:CDS 40.0%
! TGGCAAAACTGCTTTAGACA+TGG + chr8.1:45493718-45493737 MS.gene34712:CDS 40.0%
!! CTTTGAAGCTAAACCCACAA+GGG + chr8.1:45492947-45492966 MS.gene34712:CDS 40.0%
!! TGAGAGCACTGGTAATTTGT+TGG - chr8.1:45493796-45493815 None:intergenic 40.0%
!! TGATCCGTTTTTAATTGGGG+GGG - chr8.1:45493461-45493480 None:intergenic 40.0%
!!! GCAACTTTTTCATAGCAAGG+TGG - chr8.1:45492984-45493003 None:intergenic 40.0%
AGCACAGATGATTCGATTGC+TGG + chr8.1:45493658-45493677 MS.gene34712:intron 45.0%
CAACCGACAAAGAAAACCAC+AGG - chr8.1:45494204-45494223 None:intergenic 45.0%
CAGCCAATGTAGACATTGAG+AGG + chr8.1:45493741-45493760 MS.gene34712:CDS 45.0%
CCCAGGAAATGTTGGGAAAT+CGG + chr8.1:45494054-45494073 MS.gene34712:CDS 45.0%
CCGATTTCCCAACATTTCCT+GGG - chr8.1:45494057-45494076 None:intergenic 45.0%
CTCAAAAGAAATGCTCGGAG+AGG + chr8.1:45493264-45493283 MS.gene34712:CDS 45.0%
GAGAGGATATTGTTGAGTGC+TGG + chr8.1:45493758-45493777 MS.gene34712:CDS 45.0%
GATGCAACTCAAACCACTGT+TGG + chr8.1:45494387-45494406 MS.gene34712:CDS 45.0%
GCAAACTCCTTTGCATATCG+CGG + chr8.1:45492867-45492886 MS.gene34712:CDS 45.0%
GCCAGATAACAAGTACGTCA+AGG - chr8.1:45493245-45493264 None:intergenic 45.0%
TGGATTCTGGACAAGCAAAG+AGG - chr8.1:45493155-45493174 None:intergenic 45.0%
! ACCGATTTCCCAACATTTCC+TGG - chr8.1:45494058-45494077 None:intergenic 45.0%
! ATGTACAAGTGTGAGAGCAC+TGG - chr8.1:45493807-45493826 None:intergenic 45.0%
!! ATCCGTTTTTAATTGGGGGG+GGG - chr8.1:45493459-45493478 None:intergenic 45.0%
!! CAATATCCTTTAGGACGTGG+TGG - chr8.1:45493023-45493042 None:intergenic 45.0%
!! CCCTTGACGTACTTGTTATC+TGG + chr8.1:45493241-45493260 MS.gene34712:CDS 45.0%
!! GATCCGTTTTTAATTGGGGG+GGG - chr8.1:45493460-45493479 None:intergenic 45.0%
!! GCACAATATCCTTTAGGACG+TGG - chr8.1:45493026-45493045 None:intergenic 45.0%
!! GCTTTGAAGCTAAACCCACA+AGG + chr8.1:45492946-45492965 MS.gene34712:CDS 45.0%
!! GTGGTTTGAGTTGCATCCAA+TGG - chr8.1:45494384-45494403 None:intergenic 45.0%
CAATCAATAGTGAGTCCCCC+TGG + chr8.1:45493956-45493975 MS.gene34712:CDS 50.0%
CAGAGGAGCAACGTAACACT+TGG + chr8.1:45493897-45493916 MS.gene34712:CDS 50.0%
CCACAGGAATGAGCACTAGA+AGG - chr8.1:45494188-45494207 None:intergenic 50.0%
CCTTCTAGTGCTCATTCCTG+TGG + chr8.1:45494185-45494204 MS.gene34712:CDS 50.0%
GGATTGGACTGAACCCTTGT+GGG - chr8.1:45492963-45492982 None:intergenic 50.0%
TAGCCTGATAAACCCCACCA+GGG - chr8.1:45493976-45493995 None:intergenic 50.0%
TCAGTGAGTTTGGCCAACAG+TGG - chr8.1:45494403-45494422 None:intergenic 50.0%
TCCAATCCACCACGTCCTAA+AGG + chr8.1:45493014-45493033 MS.gene34712:CDS 50.0%
TTAGCCTGATAAACCCCACC+AGG - chr8.1:45493977-45493996 None:intergenic 50.0%
TTGCATATCGCGGCACCTAT+GGG + chr8.1:45492877-45492896 MS.gene34712:CDS 50.0%
TTTGCATATCGCGGCACCTA+TGG + chr8.1:45492876-45492895 MS.gene34712:CDS 50.0%
! ATAGGTGCCGCGATATGCAA+AGG - chr8.1:45492877-45492896 None:intergenic 50.0%
! TGGATTGGACTGAACCCTTG+TGG - chr8.1:45492964-45492983 None:intergenic 50.0%
!! TCCGTTTTTAATTGGGGGGG+GGG - chr8.1:45493458-45493477 None:intergenic 50.0%
!! TCCTTTAGGACGTGGTGGAT+TGG - chr8.1:45493018-45493037 None:intergenic 50.0%
AATAGTGAGTCCCCCTGGTG+GGG + chr8.1:45493961-45493980 MS.gene34712:CDS 55.0%
AGCACTAGAAGGCCCTCGAA+CGG - chr8.1:45494177-45494196 None:intergenic 55.0%
AGCCTGATAAACCCCACCAG+GGG - chr8.1:45493975-45493994 None:intergenic 55.0%
AGGCGCGAAGAAGCTCGAAA+AGG + chr8.1:45493284-45493303 MS.gene34712:CDS 55.0%
CAATAGTGAGTCCCCCTGGT+GGG + chr8.1:45493960-45493979 MS.gene34712:CDS 55.0%
CCCCCCCCCCCAATTAAAAA+CGG + chr8.1:45493454-45493473 MS.gene34712:intron 55.0%
GCAAACTGGAGATGCCCCAT+AGG - chr8.1:45492895-45492914 None:intergenic 55.0%
TCAATAGTGAGTCCCCCTGG+TGG + chr8.1:45493959-45493978 MS.gene34712:CDS 55.0%
TCATGACCTCGGTGGCAAAC+TGG - chr8.1:45492909-45492928 None:intergenic 55.0%
TGCATATCGCGGCACCTATG+GGG + chr8.1:45492878-45492897 MS.gene34712:CDS 55.0%
!! CCGTTTTTAATTGGGGGGGG+GGG - chr8.1:45493457-45493476 None:intergenic 55.0%
!! CGTTTTTAATTGGGGGGGGG+GGG - chr8.1:45493456-45493475 None:intergenic 55.0%
!! GTTTTTAATTGGGGGGGGGG+GGG - chr8.1:45493455-45493474 None:intergenic 55.0%
!! TTTTTAATTGGGGGGGGGGG+GGG - chr8.1:45493454-45493473 None:intergenic 55.0%
GCACTAGAAGGCCCTCGAAC+GGG - chr8.1:45494176-45494195 None:intergenic 60.0%
GCATCTCCAGTTTGCCACCG+AGG + chr8.1:45492900-45492919 MS.gene34712:CDS 60.0%
GCCTGATAAACCCCACCAGG+GGG - chr8.1:45493974-45493993 None:intergenic 60.0%
TCCCCCTGGTGGGGTTTATC+AGG + chr8.1:45493970-45493989 MS.gene34712:CDS 60.0%
!! TTTTAATTGGGGGGGGGGGG+GGG - chr8.1:45493453-45493472 None:intergenic 60.0%
GTCCCAAGTCGCCCGTTCGA+GGG + chr8.1:45494162-45494181 MS.gene34712:intron 65.0%
TTTAATTGGGGGGGGGGGGG+GGG - chr8.1:45493452-45493471 None:intergenic 65.0%
AGGCCCTCGAACGGGCGACT+TGG - chr8.1:45494168-45494187 None:intergenic 70.0%
CGTCCCAAGTCGCCCGTTCG+AGG + chr8.1:45494161-45494180 MS.gene34712:intron 70.0%
GGCCCTCGAACGGGCGACTT+GGG - chr8.1:45494167-45494186 None:intergenic 70.0%
TTAATTGGGGGGGGGGGGGG+GGG - chr8.1:45493451-45493470 None:intergenic 70.0%
TAATTGGGGGGGGGGGGGGG+GGG - chr8.1:45493450-45493469 None:intergenic 75.0%
! AATTGGGGGGGGGGGGGGGG+GGG - chr8.1:45493449-45493468 None:intergenic 80.0%
! ATTGGGGGGGGGGGGGGGGG+GGG - chr8.1:45493448-45493467 None:intergenic 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr8.1:45493447-45493466 None:intergenic 90.0%
! GGGGGGGGGGGGGGGGGGAC+AGG - chr8.1:45493431-45493450 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr8.1:45493446-45493465 None:intergenic 95.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 45492745 45494422 45492745 ID=MS.gene34712
chr8.1 mRNA 45492745 45494422 45492745 ID=MS.gene34712.t1;Parent=MS.gene34712
chr8.1 exon 45492745 45493377 45492745 ID=MS.gene34712.t1.exon1;Parent=MS.gene34712.t1
chr8.1 CDS 45492745 45493377 45492745 ID=cds.MS.gene34712.t1;Parent=MS.gene34712.t1
chr8.1 exon 45493665 45494075 45493665 ID=MS.gene34712.t1.exon2;Parent=MS.gene34712.t1
chr8.1 CDS 45493665 45494075 45493665 ID=cds.MS.gene34712.t1;Parent=MS.gene34712.t1
chr8.1 exon 45494183 45494422 45494183 ID=MS.gene34712.t1.exon3;Parent=MS.gene34712.t1
chr8.1 CDS 45494183 45494422 45494183 ID=cds.MS.gene34712.t1;Parent=MS.gene34712.t1
Gene Sequence

>MS.gene34712

ATGAACGCAAAAATTAGTGACCAACTCAAAATTGCAGCTGAAACGGATAATGTAGAACTCCTATATGATGTAATTCAAGATGATCCATATGTTTTCGACAGTATAGATAAACAACAATTTGTGCAAACTCCTTTGCATATCGCGGCACCTATGGGGCATCTCCAGTTTGCCACCGAGGTCATGAATTTGAAACCTTCATTTGCTTTGAAGCTAAACCCACAAGGGTTCAGTCCAATCCACCTTGCTATGAAAAAGTTGCAGTTCAGCAGTCCAATCCACCACGTCCTAAAGGATATTGTGCTTCGCTTTGTTGACATCAATAAAGACCTTGTTAAAATTAAAGGAAGGGATGGGACTCTTCTTCATTTAGCAGTTCAAACTGGAGAGGTTGAACTTTTAGTTAAATTCCTCTTTGCTTGTCCAGAATCCATTGAATACTTTACTGCGAGGTGGGAGACTGCGTTGCATATTGCTGTTAAAAATGAACAATACGAGGCCCTTGACGTACTTGTTATCTGGCTCAAAAGAAATGCTCGGAGAGGCGCGAAGAAGCTCGAAAAGGAAATACTTGATCAGAAAGATAAGGAAGGCAATTCTATTTTGCACCTTTCAGCCCAAAATAGTAAACCACAGGTAACCTCACTATATGATTAAAATCACATATCTCATTTATAATTCTTTTTCCTGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAATTAAAAACGGATCATGATAACATTAGAATAAAATTATTAGGGTATAATCTCTGTCATAAATATATAAAATTAGAATAAAATAATTAAAGTTACATTGGGAATAAAAGGTAACCCTTAGTTTCAAATATTTTTCTTTTGCAAATATGAATGATCACTAACAAACTATATTGTTCATTTATAATTTACTTGGTAGCACAGATGATTCGATTGCTGGTAAAGACTAGGATAAATTTGAAGGCAAAGAACTTGGATGGCAAAACTGCTTTAGACATGGCAGCCAATGTAGACATTGAGAGGATATTGTTGAGTGCTGGAGCAAAATCTAGCCAACAAATTACCAGTGCTCTCACACTTGTACATATTCTAAGATCAAGTACCACAATTTTGCATAAAGTGGTAACTTGGATAACTCGCACTAAAAGAGATATAACAGAGGAGCAACGTAACACTTGGTTGCTAGTTGCGACTATTGTTGCAACTTCCACCTATCAATCAATAGTGAGTCCCCCTGGTGGGGTTTATCAGGCTAATGCTAGTGACAATAATGTGAACATCACTTCCTCCAATTCCACTATTACTAACACTAACCCAGGAAATGTTGGGAAATCGGTATTGTCAAAAAAGGAATTCTTTTCGTTTTCATTTTTGAATATCCTTTCCTTTATGTATCAATTATAGCAATATTGTTTCTGAGCGTCCCAAGTCGCCCGTTCGAGGGCCTTCTAGTGCTCATTCCTGTGGTTTTCTTTGTCGGTTGCTATCTCGAATCTATGAATATTATATCCCCTACACATGTCAATTCTATTATAGTTGACATCGCGTTGTATTCATTTCTATCTGTCGTGTTAATTCTTTTTGCTATTTCGGTGTACTCTTTACTTCAACTGAGGCGCAATGTTAAGAAGTTCAGTAAACCATTGGATGCAACTCAAACCACTGTTGGCCAAACTCACTGA

Protein sequence

>MS.gene34712.t1

MNAKISDQLKIAAETDNVELLYDVIQDDPYVFDSIDKQQFVQTPLHIAAPMGHLQFATEVMNLKPSFALKLNPQGFSPIHLAMKKLQFSSPIHHVLKDIVLRFVDINKDLVKIKGRDGTLLHLAVQTGEVELLVKFLFACPESIEYFTARWETALHIAVKNEQYEALDVLVIWLKRNARRGAKKLEKEILDQKDKEGNSILHLSAQNSKPQMIRLLVKTRINLKAKNLDGKTALDMAANVDIERILLSAGAKSSQQITSALTLVHILRSSTTILHKVVTWITRTKRDITEEQRNTWLLVATIVATSTYQSIVSPPGGVYQANASDNNVNITSSNSTITNTNPGNVGKSGLLVLIPVVFFVGCYLESMNIISPTHVNSIIVDIALYSFLSVVLILFAISVYSLLQLRRNVKKFSKPLDATQTTVGQTH