Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050270.t1 | XP_024625306.1 | 80.8 | 323 | 30 | 2 | 1 | 299 | 1 | 315 | 9.10E-95 | 357.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050270.t1 | Q8GYH5 | 38.6 | 316 | 141 | 6 | 8 | 286 | 4 | 303 | 5.0e-09 | 63.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050270.t1 | A0A396GZH4 | 80.8 | 323 | 30 | 2 | 1 | 299 | 1 | 315 | 6.6e-95 | 357.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050270.t1 | MTR_7g451420 | 85.625 | 320 | 14 | 2 | 1 | 296 | 1 | 312 | 0.0 | 541 |
| MS.gene050270.t1 | MTR_3g016210 | 58.154 | 325 | 109 | 2 | 2 | 299 | 3 | 327 | 7.00e-125 | 365 |
| MS.gene050270.t1 | MTR_8g073260 | 59.105 | 313 | 96 | 2 | 8 | 296 | 10 | 314 | 4.19e-122 | 358 |
| MS.gene050270.t1 | MTR_8g072510 | 59.006 | 322 | 100 | 2 | 2 | 299 | 3 | 316 | 9.19e-122 | 357 |
| MS.gene050270.t1 | MTR_8g467780 | 58.805 | 318 | 105 | 2 | 8 | 299 | 10 | 327 | 1.58e-120 | 355 |
| MS.gene050270.t1 | MTR_8g039620 | 59.006 | 322 | 97 | 3 | 5 | 299 | 10 | 323 | 6.51e-120 | 352 |
| MS.gene050270.t1 | MTR_1g059930 | 59.873 | 314 | 94 | 2 | 6 | 295 | 9 | 314 | 9.25e-120 | 352 |
| MS.gene050270.t1 | MTR_8g066670 | 58.951 | 324 | 99 | 4 | 1 | 299 | 1067 | 1381 | 4.99e-114 | 361 |
| MS.gene050270.t1 | MTR_8g068990 | 60.131 | 306 | 103 | 5 | 6 | 299 | 9 | 307 | 7.40e-114 | 338 |
| MS.gene050270.t1 | MTR_7g021090 | 56.790 | 324 | 98 | 4 | 1 | 298 | 1 | 308 | 3.64e-112 | 332 |
| MS.gene050270.t1 | MTR_8g069880 | 57.812 | 320 | 103 | 3 | 4 | 299 | 2 | 313 | 7.35e-111 | 330 |
| MS.gene050270.t1 | MTR_8g062410 | 56.656 | 323 | 100 | 5 | 2 | 299 | 3 | 310 | 4.95e-105 | 315 |
| MS.gene050270.t1 | MTR_8g040930 | 58.456 | 272 | 84 | 2 | 52 | 299 | 2 | 268 | 2.32e-99 | 298 |
| MS.gene050270.t1 | MTR_8g041240 | 58.456 | 272 | 84 | 2 | 52 | 299 | 2 | 268 | 2.32e-99 | 298 |
| MS.gene050270.t1 | MTR_3g105650 | 45.714 | 315 | 131 | 4 | 7 | 290 | 3 | 308 | 3.74e-83 | 258 |
| MS.gene050270.t1 | MTR_8g073275 | 45.886 | 316 | 98 | 6 | 52 | 296 | 2 | 315 | 1.58e-76 | 242 |
| MS.gene050270.t1 | MTR_1g069110 | 25.617 | 324 | 197 | 7 | 1 | 299 | 5 | 309 | 3.31e-20 | 91.3 |
| MS.gene050270.t1 | MTR_7g099580 | 22.368 | 304 | 195 | 4 | 6 | 301 | 9 | 279 | 1.03e-13 | 71.6 |
| MS.gene050270.t1 | MTR_4g062100 | 23.077 | 312 | 186 | 6 | 5 | 293 | 105 | 385 | 3.91e-11 | 64.3 |
| MS.gene050270.t1 | MTR_7g117620 | 24.906 | 265 | 160 | 7 | 9 | 251 | 85 | 332 | 4.52e-11 | 64.3 |
| MS.gene050270.t1 | MTR_8g105260 | 22.791 | 215 | 135 | 3 | 2 | 216 | 95 | 278 | 7.98e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050270.t1 | AT4G10720 | 36.533 | 323 | 161 | 5 | 8 | 296 | 4 | 316 | 2.74e-57 | 191 |
| MS.gene050270.t1 | AT4G10720 | 36.533 | 323 | 161 | 5 | 8 | 296 | 4 | 316 | 6.92e-57 | 191 |
| MS.gene050270.t1 | AT5G15500 | 34.985 | 323 | 172 | 3 | 9 | 300 | 6 | 321 | 1.25e-53 | 182 |
| MS.gene050270.t1 | AT1G14500 | 35.474 | 327 | 160 | 7 | 8 | 296 | 4 | 317 | 5.75e-52 | 177 |
| MS.gene050270.t1 | AT5G54620 | 36.422 | 313 | 162 | 5 | 8 | 290 | 4 | 309 | 2.76e-51 | 176 |
| MS.gene050270.t1 | AT1G14480 | 34.049 | 326 | 167 | 6 | 8 | 296 | 4 | 318 | 1.44e-47 | 166 |
| MS.gene050270.t1 | AT5G54610 | 33.861 | 316 | 156 | 7 | 8 | 286 | 4 | 303 | 5.40e-46 | 162 |
| MS.gene050270.t1 | AT1G14480 | 35.517 | 290 | 168 | 4 | 8 | 296 | 4 | 275 | 5.33e-43 | 153 |
| MS.gene050270.t1 | AT5G51160 | 26.119 | 268 | 160 | 6 | 63 | 296 | 35 | 298 | 1.14e-20 | 92.8 |
| MS.gene050270.t1 | AT5G15500 | 28.378 | 222 | 121 | 3 | 110 | 300 | 1 | 215 | 2.64e-17 | 82.0 |
| MS.gene050270.t1 | AT2G01680 | 27.941 | 204 | 121 | 5 | 44 | 228 | 97 | 293 | 1.19e-13 | 72.0 |
| MS.gene050270.t1 | AT4G03500 | 24.917 | 301 | 159 | 8 | 9 | 292 | 251 | 501 | 7.26e-13 | 69.7 |
| MS.gene050270.t1 | AT4G03500 | 24.917 | 301 | 159 | 8 | 9 | 292 | 228 | 478 | 7.46e-13 | 69.7 |
| MS.gene050270.t1 | AT4G03500 | 24.917 | 301 | 159 | 8 | 9 | 292 | 228 | 478 | 7.46e-13 | 69.7 |
| MS.gene050270.t1 | AT4G03460 | 25.000 | 296 | 164 | 9 | 9 | 292 | 236 | 485 | 1.77e-11 | 65.5 |
| MS.gene050270.t1 | AT4G03460 | 25.170 | 294 | 162 | 9 | 11 | 292 | 206 | 453 | 1.84e-11 | 65.5 |
Find 63 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCGTTGGTGAAGTTTATC+AGG | 0.285495 | 7.1:+52472491 | MS.gene050270:CDS |
| AGGATCAAAGACCACTATTA+TGG | 0.320397 | 7.1:+52472353 | MS.gene050270:CDS |
| CTTCGATTGTTGGTAAGTAC+TGG | 0.324415 | 7.1:+52472189 | MS.gene050270:CDS |
| AGCTTTCAGTTTATCAAGAT+TGG | 0.345596 | 7.1:-52470803 | None:intergenic |
| AGCGAGAAACCATCCTCTTT+TGG | 0.350553 | 7.1:-52471050 | None:intergenic |
| CAATTTGAATTACTGCATAA+AGG | 0.361525 | 7.1:-52470852 | None:intergenic |
| AAAGACCTTGTTCGAGTTCA+AGG | 0.377835 | 7.1:+52471087 | MS.gene050270:CDS |
| CTTTGCATATCGCCGCATCT+AGG | 0.387295 | 7.1:+52470923 | MS.gene050270:CDS |
| GGGAGTCAGCGTTGATTGAT+AGG | 0.399734 | 7.1:-52472472 | None:intergenic |
| ATTTGAAACCTTCATTTGCT+TGG | 0.424279 | 7.1:+52470977 | MS.gene050270:CDS |
| AGCACAGGCGCTTCGATTGT+TGG | 0.424869 | 7.1:+52472179 | MS.gene050270:CDS |
| TCGCATTGAAAGAAATATAT+CGG | 0.432489 | 7.1:+52472398 | MS.gene050270:CDS |
| TTTGCATATCGCCGCATCTA+GGG | 0.439653 | 7.1:+52470924 | MS.gene050270:CDS |
| ATAATAGTGGTCTTTGATCC+TGG | 0.440453 | 7.1:-52472351 | None:intergenic |
| GCATCTCCGGTTTGCCATTG+AGG | 0.441755 | 7.1:+52470948 | MS.gene050270:CDS |
| CGAATCTATAATCTCTAGAA+TGG | 0.451551 | 7.1:-52470881 | None:intergenic |
| TTTCAAATTCATAACCTCAA+TGG | 0.456133 | 7.1:-52470962 | None:intergenic |
| CTTCATCTTGCAAGTCAAAT+CGG | 0.456236 | 7.1:+52471129 | MS.gene050270:CDS |
| ACCTGATAAACTTCACCAAC+GGG | 0.467209 | 7.1:-52472492 | None:intergenic |
| CCCCACAGTCACATCTTGAA+TGG | 0.481975 | 7.1:-52471196 | None:intergenic |
| CTGAAAGCTGCAGCTGAAGC+GGG | 0.490793 | 7.1:+52470817 | MS.gene050270:CDS |
| TTTAGCTTCCAAGCAAATGA+AGG | 0.492400 | 7.1:-52470985 | None:intergenic |
| TAGCGCAGAAATGTGCAAAA+TGG | 0.492943 | 7.1:-52471365 | None:intergenic |
| TCATAACCTCAATGGCAAAC+CGG | 0.496377 | 7.1:-52470954 | None:intergenic |
| AAGAGTATATTATTTAGTGC+TGG | 0.498908 | 7.1:+52472279 | MS.gene050270:CDS |
| CTTAGGAGAAATATCGAAAG+AGG | 0.502785 | 7.1:+52471289 | MS.gene050270:intron |
| AAAACCTAGCTTAGAAGTCA+TGG | 0.503544 | 7.1:+52472305 | MS.gene050270:CDS |
| CTATGCAAAATGACCAAAAG+AGG | 0.517456 | 7.1:+52471037 | MS.gene050270:CDS |
| TGCGCTAAGCAACGAGCCAC+AGG | 0.517940 | 7.1:+52471381 | MS.gene050270:CDS |
| GTCACATCTTGAATGGAATC+CGG | 0.521024 | 7.1:-52471189 | None:intergenic |
| TTGCATATCGCCGCATCTAG+GGG | 0.527689 | 7.1:+52470925 | MS.gene050270:CDS |
| AAGTACTGGGATAAATTTGA+AGG | 0.534665 | 7.1:+52472203 | MS.gene050270:CDS |
| ATTCAAGATGTGACTGTGGG+GGG | 0.535609 | 7.1:+52471198 | MS.gene050270:CDS |
| CGGAGAAGCAACGCAACACT+TGG | 0.536689 | 7.1:+52472418 | MS.gene050270:CDS |
| TCCATTCAAGATGTGACTGT+GGG | 0.544369 | 7.1:+52471195 | MS.gene050270:CDS |
| TTCGATTGTTGGTAAGTACT+GGG | 0.548072 | 7.1:+52472190 | MS.gene050270:CDS |
| ACTGAAAGCTGCAGCTGAAG+CGG | 0.553330 | 7.1:+52470816 | MS.gene050270:CDS |
| ATTTGACTTGCAAGATGAAG+AGG | 0.554003 | 7.1:-52471126 | None:intergenic |
| AAGACCTTGTTCGAGTTCAA+GGG | 0.554891 | 7.1:+52471088 | MS.gene050270:CDS |
| GTTCGAGTTCAAGGGAGAGA+AGG | 0.562197 | 7.1:+52471096 | MS.gene050270:CDS |
| TATACTCTTGTTCTCTAGAG+TGG | 0.567180 | 7.1:-52472265 | None:intergenic |
| GCATCCATGACTTCTAAGCT+AGG | 0.571365 | 7.1:-52472309 | None:intergenic |
| CTCTCCCTTGAACTCGAACA+AGG | 0.580165 | 7.1:-52471092 | None:intergenic |
| CATGAATTACTATGTAGCAC+AGG | 0.596638 | 7.1:+52472164 | MS.gene050270:CDS |
| TTCAAGATGTGACTGTGGGG+GGG | 0.598053 | 7.1:+52471199 | MS.gene050270:CDS |
| GCAAAATGACCAAAAGAGGA+TGG | 0.601826 | 7.1:+52471041 | MS.gene050270:CDS |
| CAATCAACGCTGACTCCCGT+TGG | 0.604040 | 7.1:+52472477 | MS.gene050270:CDS |
| CTAGATGCGGCGATATGCAA+AGG | 0.606329 | 7.1:-52470922 | None:intergenic |
| CATTCAAGATGTGACTGTGG+GGG | 0.609812 | 7.1:+52471197 | MS.gene050270:CDS |
| TAAGAACAATGAAGCAGTCG+AGG | 0.609953 | 7.1:+52473573 | MS.gene050270:CDS |
| AACCTGATAAACTTCACCAA+CGG | 0.612671 | 7.1:-52472493 | None:intergenic |
| CCTGGTTTATCTGCAAGTGT+AGG | 0.615113 | 7.1:-52472333 | None:intergenic |
| CATACTAAATCACAAGGATG+AGG | 0.615450 | 7.1:+52471333 | MS.gene050270:CDS |
| CCTACACTTGCAGATAAACC+AGG | 0.621787 | 7.1:+52472333 | MS.gene050270:CDS |
| TTCCATTCAAGATGTGACTG+TGG | 0.644137 | 7.1:+52471194 | MS.gene050270:CDS |
| CCATTCAAGATGTGACTGTG+GGG | 0.654082 | 7.1:+52471196 | MS.gene050270:CDS |
| TGCATATCGCCGCATCTAGG+GGG | 0.655530 | 7.1:+52470926 | MS.gene050270:CDS |
| ACTCTTGTTCTCTAGAGTGG+CGG | 0.656146 | 7.1:-52472262 | None:intergenic |
| GCTTGGAAGCTAAATCCGCA+AGG | 0.656349 | 7.1:+52470994 | MS.gene050270:CDS |
| AGTCAGCGTTGATTGATAGG+TGG | 0.659373 | 7.1:-52472469 | None:intergenic |
| TTTGCATAGCGAGATGAATG+GGG | 0.662734 | 7.1:-52471023 | None:intergenic |
| TGAATGGGGCTGAATCCTTG+CGG | 0.670822 | 7.1:-52471009 | None:intergenic |
| ATATAACATACTAAATCACA+AGG | 0.679043 | 7.1:+52471327 | MS.gene050270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAATAATTAAACATATA+TGG | - | chr7.1:52473292-52473311 | None:intergenic | 10.0% |
| !!! | TTAAATTATTAATTGTTGTT+TGG | + | chr7.1:52473149-52473168 | MS.gene050270:intron | 10.0% |
| !!! | TTTTTTAAATATTGAAATCT+CGG | - | chr7.1:52471594-52471613 | None:intergenic | 10.0% |
| !! | AAATAATTAAACATATATGG+TGG | - | chr7.1:52473289-52473308 | None:intergenic | 15.0% |
| !! | AACGAAGAAATAATATAAAA+GGG | - | chr7.1:52471768-52471787 | None:intergenic | 15.0% |
| !! | CACATATATTATGTATATAA+AGG | + | chr7.1:52471895-52471914 | MS.gene050270:intron | 15.0% |
| !! | GTTTAATTATTTAAGAGTTT+AGG | + | chr7.1:52473297-52473316 | MS.gene050270:intron | 15.0% |
| !!! | GTTATTTATTTTTTATTGAC+AGG | - | chr7.1:52471793-52471812 | None:intergenic | 15.0% |
| !!! | TTTAGTTTACTATAGATTTT+TGG | + | chr7.1:52472849-52472868 | MS.gene050270:intron | 15.0% |
| !! | AAAACTACTAAATATATGAC+AGG | - | chr7.1:52471413-52471432 | None:intergenic | 20.0% |
| !! | ATATAACATACTAAATCACA+AGG | + | chr7.1:52471327-52471346 | MS.gene050270:CDS | 20.0% |
| !! | CAACGAAGAAATAATATAAA+AGG | - | chr7.1:52471769-52471788 | None:intergenic | 20.0% |
| ! | AAACAATGATAACAATGACA+AGG | - | chr7.1:52473048-52473067 | None:intergenic | 25.0% |
| ! | ACTTCATCTCATAAGTTATA+AGG | + | chr7.1:52471477-52471496 | MS.gene050270:intron | 25.0% |
| ! | AGTATTGCTATATAGTTGAT+AGG | - | chr7.1:52472653-52472672 | None:intergenic | 25.0% |
| ! | ATCATGGTTTAATTAGATTG+CGG | - | chr7.1:52472068-52472087 | None:intergenic | 25.0% |
| ! | CAATCTAATTAAACCATGAT+AGG | + | chr7.1:52472068-52472087 | MS.gene050270:intron | 25.0% |
| ! | CAATTTGAATTACTGCATAA+AGG | - | chr7.1:52470855-52470874 | None:intergenic | 25.0% |
| ! | GGTGAAAAATAAAAACTTTG+AGG | + | chr7.1:52471243-52471262 | MS.gene050270:intron | 25.0% |
| ! | TCGCATTGAAAGAAATATAT+CGG | + | chr7.1:52472398-52472417 | MS.gene050270:CDS | 25.0% |
| ! | TTTCAAATTCATAACCTCAA+TGG | - | chr7.1:52470965-52470984 | None:intergenic | 25.0% |
| !! | AAGAGTATATTATTTAGTGC+TGG | + | chr7.1:52472279-52472298 | MS.gene050270:CDS | 25.0% |
| !! | CAACATTTTATCCATAATAG+TGG | - | chr7.1:52472367-52472386 | None:intergenic | 25.0% |
| !! | CACATTTTCTTGCAATATAA+AGG | - | chr7.1:52471961-52471980 | None:intergenic | 25.0% |
| !! | TTGCAACAATGTTTTATCTA+TGG | - | chr7.1:52472905-52472924 | None:intergenic | 25.0% |
| !!! | CTATATAGTTGATAGGAAAA+AGG | - | chr7.1:52472646-52472665 | None:intergenic | 25.0% |
| !!! | TAAATTACTTTTTGCTTGTC+CGG | + | chr7.1:52471170-52471189 | MS.gene050270:CDS | 25.0% |
| !!! | TTTTTAGTATTGTTGCAACT+GGG | + | chr7.1:52472812-52472831 | MS.gene050270:intron | 25.0% |
| !!! | TTTTTTAGTATTGTTGCAAC+TGG | + | chr7.1:52472811-52472830 | MS.gene050270:intron | 25.0% |
| AAAGAAATTCCAACACACAT+TGG | - | chr7.1:52473260-52473279 | None:intergenic | 30.0% | |
| AAATGAAACGGTGTTTCATA+TGG | - | chr7.1:52473376-52473395 | None:intergenic | 30.0% | |
| AATATTCACAAGTAGTGAAC+TGG | - | chr7.1:52472104-52472123 | None:intergenic | 30.0% | |
| ACTACTAAATATATGACAGG+AGG | - | chr7.1:52471410-52471429 | None:intergenic | 30.0% | |
| ACTCTTATAAATCTGTGCAA+TGG | + | chr7.1:52473471-52473490 | MS.gene050270:intron | 30.0% | |
| AGATAAAACATTGTTGCAAC+AGG | + | chr7.1:52472906-52472925 | MS.gene050270:intron | 30.0% | |
| AGCTTTCAGTTTATCAAGAT+TGG | - | chr7.1:52470806-52470825 | None:intergenic | 30.0% | |
| ATCATAACATTGTCATGTGT+AGG | - | chr7.1:52472775-52472794 | None:intergenic | 30.0% | |
| TCATAACATTGTCATGTGTA+GGG | - | chr7.1:52472774-52472793 | None:intergenic | 30.0% | |
| ! | ATAGAGAGAAGGTATAACAA+AGG | - | chr7.1:52472741-52472760 | None:intergenic | 30.0% |
| ! | ATTTGAAACCTTCATTTGCT+TGG | + | chr7.1:52470977-52470996 | MS.gene050270:CDS | 30.0% |
| ! | CGAATCTATAATCTCTAGAA+TGG | - | chr7.1:52470884-52470903 | None:intergenic | 30.0% |
| ! | TAAATCTTGGGTTGTCAATT+CGG | - | chr7.1:52471512-52471531 | None:intergenic | 30.0% |
| ! | TTTGTTATACCTTCTCTCTA+TGG | + | chr7.1:52472740-52472759 | MS.gene050270:intron | 30.0% |
| !! | AAGTACTGGGATAAATTTGA+AGG | + | chr7.1:52472203-52472222 | MS.gene050270:CDS | 30.0% |
| !! | ATACAGATCACAATTTGCTA+CGG | - | chr7.1:52473082-52473101 | None:intergenic | 30.0% |
| !! | TTAAAGACTAATTCTAGCTC+TGG | + | chr7.1:52473214-52473233 | MS.gene050270:intron | 30.0% |
| AAAACCTAGCTTAGAAGTCA+TGG | + | chr7.1:52472305-52472324 | MS.gene050270:CDS | 35.0% | |
| AACCTGATAAACTTCACCAA+CGG | - | chr7.1:52472496-52472515 | None:intergenic | 35.0% | |
| AATCCAAATCCAACAACTCA+TGG | + | chr7.1:52471707-52471726 | MS.gene050270:intron | 35.0% | |
| AGGATCAAAGACCACTATTA+TGG | + | chr7.1:52472353-52472372 | MS.gene050270:CDS | 35.0% | |
| AGTCTTACGATTAAGATCAG+TGG | - | chr7.1:52471643-52471662 | None:intergenic | 35.0% | |
| ATAATAGTGGTCTTTGATCC+TGG | - | chr7.1:52472354-52472373 | None:intergenic | 35.0% | |
| ATTTCTACCCCAAAAAATGC+TGG | + | chr7.1:52472564-52472583 | MS.gene050270:intron | 35.0% | |
| CATAACATTGTCATGTGTAG+GGG | - | chr7.1:52472773-52472792 | None:intergenic | 35.0% | |
| CATACTAAATCACAAGGATG+AGG | + | chr7.1:52471333-52471352 | MS.gene050270:CDS | 35.0% | |
| CATGAATTACTATGTAGCAC+AGG | + | chr7.1:52472164-52472183 | MS.gene050270:CDS | 35.0% | |
| CTATGCAAAATGACCAAAAG+AGG | + | chr7.1:52471037-52471056 | MS.gene050270:CDS | 35.0% | |
| CTGGTCCTTTAACTAAGAAA+CGG | + | chr7.1:52473233-52473252 | MS.gene050270:intron | 35.0% | |
| CTTAGGAGAAATATCGAAAG+AGG | + | chr7.1:52471289-52471308 | MS.gene050270:intron | 35.0% | |
| CTTCATCTTGCAAGTCAAAT+CGG | + | chr7.1:52471129-52471148 | MS.gene050270:CDS | 35.0% | |
| GGTAGAAATTGTAGAATTGG+AGG | - | chr7.1:52472553-52472572 | None:intergenic | 35.0% | |
| TGAGCTCAACTTATTGTAGA+TGG | + | chr7.1:52473510-52473529 | MS.gene050270:intron | 35.0% | |
| TGGATTCAAACTACCTATCA+TGG | - | chr7.1:52472084-52472103 | None:intergenic | 35.0% | |
| TGGGGTAGAAATTGTAGAAT+TGG | - | chr7.1:52472556-52472575 | None:intergenic | 35.0% | |
| TGGTCTAGTTAACTATCTAG+TGG | + | chr7.1:52471727-52471746 | MS.gene050270:intron | 35.0% | |
| TTAACTAGACCATGAGTTGT+TGG | - | chr7.1:52471719-52471738 | None:intergenic | 35.0% | |
| TTCTCCTAAGAAAGCAAACA+AGG | - | chr7.1:52471279-52471298 | None:intergenic | 35.0% | |
| TTGGTCCGTTTCTTAGTTAA+AGG | - | chr7.1:52473241-52473260 | None:intergenic | 35.0% | |
| TTTCTACCCCAAAAAATGCT+GGG | + | chr7.1:52472565-52472584 | MS.gene050270:intron | 35.0% | |
| ! | ATCTCCTTGTTTGCTTTCTT+AGG | + | chr7.1:52471272-52471291 | MS.gene050270:intron | 35.0% |
| ! | ATTTTGCATAGCGAGATGAA+TGG | - | chr7.1:52471028-52471047 | None:intergenic | 35.0% |
| ! | TATACTCTTGTTCTCTAGAG+TGG | - | chr7.1:52472268-52472287 | None:intergenic | 35.0% |
| ! | TTCGATTGTTGGTAAGTACT+GGG | + | chr7.1:52472190-52472209 | MS.gene050270:CDS | 35.0% |
| ! | TTTAGCTTCCAAGCAAATGA+AGG | - | chr7.1:52470988-52471007 | None:intergenic | 35.0% |
| ! | TTTCTTACGAGTTGAAGAAG+AGG | + | chr7.1:52471431-52471450 | MS.gene050270:intron | 35.0% |
| ! | TTTTGCATAGCGAGATGAAT+GGG | - | chr7.1:52471027-52471046 | None:intergenic | 35.0% |
| !! | ATTTGACTTGCAAGATGAAG+AGG | - | chr7.1:52471129-52471148 | None:intergenic | 35.0% |
| ACCTGATAAACTTCACCAAC+GGG | - | chr7.1:52472495-52472514 | None:intergenic | 40.0% | |
| ACTGTGCGCAATCTAAATCT+TGG | - | chr7.1:52471525-52471544 | None:intergenic | 40.0% | |
| AGACCATGAGTTGTTGGATT+TGG | - | chr7.1:52471713-52471732 | None:intergenic | 40.0% | |
| AGATTTAGATTGCGCACAGT+TGG | + | chr7.1:52471525-52471544 | MS.gene050270:intron | 40.0% | |
| ATACTAATTCTGACCCCAAG+AGG | + | chr7.1:52472668-52472687 | MS.gene050270:intron | 40.0% | |
| CAAAGGATAAACCAAACCAC+TGG | - | chr7.1:52472724-52472743 | None:intergenic | 40.0% | |
| CAGTTGTGACCTCAATACAA+AGG | - | chr7.1:52472035-52472054 | None:intergenic | 40.0% | |
| CCCAAAAAATGCTGGGAAAT+CGG | + | chr7.1:52472572-52472591 | MS.gene050270:intron | 40.0% | |
| CCTCAATACAAAGGACTTAG+AGG | - | chr7.1:52472026-52472045 | None:intergenic | 40.0% | |
| CCTCTAAGTCCTTTGTATTG+AGG | + | chr7.1:52472023-52472042 | MS.gene050270:intron | 40.0% | |
| CTCAACATGATGTGTGTTGT+TGG | + | chr7.1:52473185-52473204 | MS.gene050270:intron | 40.0% | |
| CTGTGCGCAATCTAAATCTT+GGG | - | chr7.1:52471524-52471543 | None:intergenic | 40.0% | |
| GCAAAATGACCAAAAGAGGA+TGG | + | chr7.1:52471041-52471060 | MS.gene050270:CDS | 40.0% | |
| GCAAGAAAATGTGTGTGATG+CGG | + | chr7.1:52471968-52471987 | MS.gene050270:intron | 40.0% | |
| GTCACATCTTGAATGGAATC+CGG | - | chr7.1:52471192-52471211 | None:intergenic | 40.0% | |
| GTTATACCTTCTCTCTATGG+AGG | + | chr7.1:52472743-52472762 | MS.gene050270:intron | 40.0% | |
| TAAGAACAATGAAGCAGTCG+AGG | + | chr7.1:52473573-52473592 | MS.gene050270:CDS | 40.0% | |
| TACTAATTCTGACCCCAAGA+GGG | + | chr7.1:52472669-52472688 | MS.gene050270:intron | 40.0% | |
| TAGCGCAGAAATGTGCAAAA+TGG | - | chr7.1:52471368-52471387 | None:intergenic | 40.0% | |
| TATTGTGCAAATTGACGTCG+AGG | - | chr7.1:52473446-52473465 | None:intergenic | 40.0% | |
| TCATAACCTCAATGGCAAAC+CGG | - | chr7.1:52470957-52470976 | None:intergenic | 40.0% | |
| TCCATTCAAGATGTGACTGT+GGG | + | chr7.1:52471195-52471214 | MS.gene050270:CDS | 40.0% | |
| TGAAACTGCACTGCATATTG+CGG | + | chr7.1:52471222-52471241 | MS.gene050270:intron | 40.0% | |
| TTCCATTCAAGATGTGACTG+TGG | + | chr7.1:52471194-52471213 | MS.gene050270:CDS | 40.0% | |
| TTGTATTGAGGTCACAACTG+CGG | + | chr7.1:52472035-52472054 | MS.gene050270:intron | 40.0% | |
| TTGTGATTGCAATGTCGTTG+CGG | + | chr7.1:52471997-52472016 | MS.gene050270:intron | 40.0% | |
| TTTGCATAGCGAGATGAATG+GGG | - | chr7.1:52471026-52471045 | None:intergenic | 40.0% | |
| ! | AAAGACCTTGTTCGAGTTCA+AGG | + | chr7.1:52471087-52471106 | MS.gene050270:CDS | 40.0% |
| ! | AAGACCTTGTTCGAGTTCAA+GGG | + | chr7.1:52471088-52471107 | MS.gene050270:CDS | 40.0% |
| ! | CTTCGATTGTTGGTAAGTAC+TGG | + | chr7.1:52472189-52472208 | MS.gene050270:CDS | 40.0% |
| !!! | ACCGATTTCCCAGCATTTTT+TGG | - | chr7.1:52472576-52472595 | None:intergenic | 40.0% |
| !!! | CCGATTTCCCAGCATTTTTT+GGG | - | chr7.1:52472575-52472594 | None:intergenic | 40.0% |
| !!! | CGATTTCCCAGCATTTTTTG+GGG | - | chr7.1:52472574-52472593 | None:intergenic | 40.0% |
| AACAGGAGAAACACCCATCA+AGG | + | chr7.1:52472923-52472942 | MS.gene050270:intron | 45.0% | |
| AGAAACACCCATCAAGGTTG+TGG | + | chr7.1:52472929-52472948 | MS.gene050270:intron | 45.0% | |
| AGAAACGGACCAATGTGTGT+TGG | + | chr7.1:52473248-52473267 | MS.gene050270:intron | 45.0% | |
| ATATGACAGGAGGTTACCTG+TGG | - | chr7.1:52471400-52471419 | None:intergenic | 45.0% | |
| ATTCAAGATGTGACTGTGGG+GGG | + | chr7.1:52471198-52471217 | MS.gene050270:CDS | 45.0% | |
| CATCAAGGTTGTGGGATAGA+CGG | + | chr7.1:52472938-52472957 | MS.gene050270:intron | 45.0% | |
| CATTCAAGATGTGACTGTGG+GGG | + | chr7.1:52471197-52471216 | MS.gene050270:CDS | 45.0% | |
| CCATTCAAGATGTGACTGTG+GGG | + | chr7.1:52471196-52471215 | MS.gene050270:CDS | 45.0% | |
| CCTACACTTGCAGATAAACC+AGG | + | chr7.1:52472333-52472352 | MS.gene050270:CDS | 45.0% | |
| CCTGGTTTATCTGCAAGTGT+AGG | - | chr7.1:52472336-52472355 | None:intergenic | 45.0% | |
| GAAACACCCATCAAGGTTGT+GGG | + | chr7.1:52472930-52472949 | MS.gene050270:intron | 45.0% | |
| GCATCCATGACTTCTAAGCT+AGG | - | chr7.1:52472312-52472331 | None:intergenic | 45.0% | |
| GGTTATCCTCCATAGAGAGA+AGG | - | chr7.1:52472752-52472771 | None:intergenic | 45.0% | |
| GTCTATCCCACAACCTTGAT+GGG | - | chr7.1:52472939-52472958 | None:intergenic | 45.0% | |
| TTTGCATATCGCCGCATCTA+GGG | + | chr7.1:52470924-52470943 | MS.gene050270:CDS | 45.0% | |
| ! | AGCGAGAAACCATCCTCTTT+TGG | - | chr7.1:52471053-52471072 | None:intergenic | 45.0% |
| ! | GTGTTCCTCTTTTCCCATAC+CGG | + | chr7.1:52473417-52473436 | MS.gene050270:intron | 45.0% |
| ! | TCCCGTTGGTGAAGTTTATC+AGG | + | chr7.1:52472491-52472510 | MS.gene050270:CDS | 45.0% |
| !! | ACTCTTGTTCTCTAGAGTGG+CGG | - | chr7.1:52472265-52472284 | None:intergenic | 45.0% |
| !! | AGTCAGCGTTGATTGATAGG+TGG | - | chr7.1:52472472-52472491 | None:intergenic | 45.0% |
| !! | TTGTTTCTGACTTCCACCAG+CGG | - | chr7.1:52472997-52473016 | None:intergenic | 45.0% |
| !! | ATTTAAAAAATAAAATGAAA+CGG | - | chr7.1:52473388-52473407 | None:intergenic | 5.0% |
| AATTCTGACCCCAAGAGGGA+GGG | + | chr7.1:52472673-52472692 | MS.gene050270:intron | 50.0% | |
| ACTGAAAGCTGCAGCTGAAG+CGG | + | chr7.1:52470816-52470835 | MS.gene050270:CDS | 50.0% | |
| AGTCAGCACGAGCAAGATTG+AGG | + | chr7.1:52471566-52471585 | MS.gene050270:intron | 50.0% | |
| CAAATTGACGTCGAGGCAAC+CGG | - | chr7.1:52473439-52473458 | None:intergenic | 50.0% | |
| CCCCACAGTCACATCTTGAA+TGG | - | chr7.1:52471199-52471218 | None:intergenic | 50.0% | |
| CGTCTATCCCACAACCTTGA+TGG | - | chr7.1:52472940-52472959 | None:intergenic | 50.0% | |
| CTAGATGCGGCGATATGCAA+AGG | - | chr7.1:52470925-52470944 | None:intergenic | 50.0% | |
| CTCTCCCTTGAACTCGAACA+AGG | - | chr7.1:52471095-52471114 | None:intergenic | 50.0% | |
| CTTTGCATATCGCCGCATCT+AGG | + | chr7.1:52470923-52470942 | MS.gene050270:CDS | 50.0% | |
| GCTTGGAAGCTAAATCCGCA+AGG | + | chr7.1:52470994-52471013 | MS.gene050270:CDS | 50.0% | |
| TAAACCAAACCACTGGACCG+CGG | - | chr7.1:52472717-52472736 | None:intergenic | 50.0% | |
| TAATTCTGACCCCAAGAGGG+AGG | + | chr7.1:52472672-52472691 | MS.gene050270:intron | 50.0% | |
| TGAATGGGGCTGAATCCTTG+CGG | - | chr7.1:52471012-52471031 | None:intergenic | 50.0% | |
| TTCAAGATGTGACTGTGGGG+GGG | + | chr7.1:52471199-52471218 | MS.gene050270:CDS | 50.0% | |
| TTGCATATCGCCGCATCTAG+GGG | + | chr7.1:52470925-52470944 | MS.gene050270:CDS | 50.0% | |
| ! | GTTCGAGTTCAAGGGAGAGA+AGG | + | chr7.1:52471096-52471115 | MS.gene050270:CDS | 50.0% |
| !! | GGGAGTCAGCGTTGATTGAT+AGG | - | chr7.1:52472475-52472494 | None:intergenic | 50.0% |
| AGCACAGGCGCTTCGATTGT+TGG | + | chr7.1:52472179-52472198 | MS.gene050270:CDS | 55.0% | |
| CGGAGAAGCAACGCAACACT+TGG | + | chr7.1:52472418-52472437 | MS.gene050270:CDS | 55.0% | |
| CTGAAAGCTGCAGCTGAAGC+GGG | + | chr7.1:52470817-52470836 | MS.gene050270:CDS | 55.0% | |
| GGCAACCGGTATGGGAAAAG+AGG | - | chr7.1:52473425-52473444 | None:intergenic | 55.0% | |
| TGAGGTCACAACTGCGGTTG+CGG | + | chr7.1:52472041-52472060 | MS.gene050270:intron | 55.0% | |
| TGCATATCGCCGCATCTAGG+GGG | + | chr7.1:52470926-52470945 | MS.gene050270:CDS | 55.0% | |
| ! | GCATCTCCGGTTTGCCATTG+AGG | + | chr7.1:52470948-52470967 | MS.gene050270:CDS | 55.0% |
| !! | CAATCAACGCTGACTCCCGT+TGG | + | chr7.1:52472477-52472496 | MS.gene050270:CDS | 55.0% |
| AGAGAGCCTACCCTCCCTCT+TGG | - | chr7.1:52472686-52472705 | None:intergenic | 60.0% | |
| AGAGCCTACCCTCCCTCTTG+GGG | - | chr7.1:52472684-52472703 | None:intergenic | 60.0% | |
| GACGTCGAGGCAACCGGTAT+GGG | - | chr7.1:52473433-52473452 | None:intergenic | 60.0% | |
| GAGAGCCTACCCTCCCTCTT+GGG | - | chr7.1:52472685-52472704 | None:intergenic | 60.0% | |
| GAGGGTAGGCTCTCTAGTCG+TGG | + | chr7.1:52472691-52472710 | MS.gene050270:intron | 60.0% | |
| GAGGTCACAACTGCGGTTGC+GGG | + | chr7.1:52472042-52472061 | MS.gene050270:intron | 60.0% | |
| TCCACCAGCGGTAGTTCGAG+TGG | - | chr7.1:52472985-52473004 | None:intergenic | 60.0% | |
| TCTGCCACTCGAACTACCGC+TGG | + | chr7.1:52472978-52472997 | MS.gene050270:intron | 60.0% | |
| TGACGTCGAGGCAACCGGTA+TGG | - | chr7.1:52473434-52473453 | None:intergenic | 60.0% | |
| TGCGCTAAGCAACGAGCCAC+AGG | + | chr7.1:52471381-52471400 | MS.gene050270:CDS | 60.0% | |
| AGGCTCTCTAGTCGTGGCCG+CGG | + | chr7.1:52472697-52472716 | MS.gene050270:intron | 65.0% | |
| CCGGAGATGCCCCCTAGATG+CGG | - | chr7.1:52470938-52470957 | None:intergenic | 65.0% | |
| CTGACCCCAAGAGGGAGGGT+AGG | + | chr7.1:52472677-52472696 | MS.gene050270:intron | 65.0% | |
| GCCACTCGAACTACCGCTGG+TGG | + | chr7.1:52472981-52473000 | MS.gene050270:intron | 65.0% | |
| !! | CCGCATCTAGGGGGCATCTC+CGG | + | chr7.1:52470935-52470954 | MS.gene050270:CDS | 65.0% |
| GTGGCCGCGGTCCAGTGGTT+TGG | + | chr7.1:52472710-52472729 | MS.gene050270:intron | 70.0% | |
| TAGTCGTGGCCGCGGTCCAG+TGG | + | chr7.1:52472705-52472724 | MS.gene050270:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 52470793 | 52473645 | 52470793 | ID=MS.gene050270 |
| chr7.1 | mRNA | 52470793 | 52473645 | 52470793 | ID=MS.gene050270.t1;Parent=MS.gene050270 |
| chr7.1 | exon | 52470793 | 52471220 | 52470793 | ID=MS.gene050270.t1.exon1;Parent=MS.gene050270.t1 |
| chr7.1 | CDS | 52470793 | 52471220 | 52470793 | ID=cds.MS.gene050270.t1;Parent=MS.gene050270.t1 |
| chr7.1 | exon | 52471294 | 52471402 | 52471294 | ID=MS.gene050270.t1.exon2;Parent=MS.gene050270.t1 |
| chr7.1 | CDS | 52471294 | 52471402 | 52471294 | ID=cds.MS.gene050270.t1;Parent=MS.gene050270.t1 |
| chr7.1 | exon | 52472162 | 52472512 | 52472162 | ID=MS.gene050270.t1.exon3;Parent=MS.gene050270.t1 |
| chr7.1 | CDS | 52472162 | 52472512 | 52472162 | ID=cds.MS.gene050270.t1;Parent=MS.gene050270.t1 |
| chr7.1 | exon | 52473529 | 52473645 | 52473529 | ID=MS.gene050270.t1.exon4;Parent=MS.gene050270.t1 |
| chr7.1 | CDS | 52473529 | 52473645 | 52473529 | ID=cds.MS.gene050270.t1;Parent=MS.gene050270.t1 |
| Gene Sequence |
| Protein sequence |