AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050270.t1 MTR_7g451420 85.625 320 14 2 1 296 1 312 0.0 541
MS.gene050270.t1 MTR_3g016210 58.154 325 109 2 2 299 3 327 7.00e-125 365
MS.gene050270.t1 MTR_8g073260 59.105 313 96 2 8 296 10 314 4.19e-122 358
MS.gene050270.t1 MTR_8g072510 59.006 322 100 2 2 299 3 316 9.19e-122 357
MS.gene050270.t1 MTR_8g467780 58.805 318 105 2 8 299 10 327 1.58e-120 355
MS.gene050270.t1 MTR_8g039620 59.006 322 97 3 5 299 10 323 6.51e-120 352
MS.gene050270.t1 MTR_1g059930 59.873 314 94 2 6 295 9 314 9.25e-120 352
MS.gene050270.t1 MTR_8g066670 58.951 324 99 4 1 299 1067 1381 4.99e-114 361
MS.gene050270.t1 MTR_8g068990 60.131 306 103 5 6 299 9 307 7.40e-114 338
MS.gene050270.t1 MTR_7g021090 56.790 324 98 4 1 298 1 308 3.64e-112 332
MS.gene050270.t1 MTR_8g069880 57.812 320 103 3 4 299 2 313 7.35e-111 330
MS.gene050270.t1 MTR_8g062410 56.656 323 100 5 2 299 3 310 4.95e-105 315
MS.gene050270.t1 MTR_8g040930 58.456 272 84 2 52 299 2 268 2.32e-99 298
MS.gene050270.t1 MTR_8g041240 58.456 272 84 2 52 299 2 268 2.32e-99 298
MS.gene050270.t1 MTR_3g105650 45.714 315 131 4 7 290 3 308 3.74e-83 258
MS.gene050270.t1 MTR_8g073275 45.886 316 98 6 52 296 2 315 1.58e-76 242
MS.gene050270.t1 MTR_1g069110 25.617 324 197 7 1 299 5 309 3.31e-20 91.3
MS.gene050270.t1 MTR_7g099580 22.368 304 195 4 6 301 9 279 1.03e-13 71.6
MS.gene050270.t1 MTR_4g062100 23.077 312 186 6 5 293 105 385 3.91e-11 64.3
MS.gene050270.t1 MTR_7g117620 24.906 265 160 7 9 251 85 332 4.52e-11 64.3
MS.gene050270.t1 MTR_8g105260 22.791 215 135 3 2 216 95 278 7.98e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050270.t1 AT4G10720 36.533 323 161 5 8 296 4 316 2.74e-57 191
MS.gene050270.t1 AT4G10720 36.533 323 161 5 8 296 4 316 6.92e-57 191
MS.gene050270.t1 AT5G15500 34.985 323 172 3 9 300 6 321 1.25e-53 182
MS.gene050270.t1 AT1G14500 35.474 327 160 7 8 296 4 317 5.75e-52 177
MS.gene050270.t1 AT5G54620 36.422 313 162 5 8 290 4 309 2.76e-51 176
MS.gene050270.t1 AT1G14480 34.049 326 167 6 8 296 4 318 1.44e-47 166
MS.gene050270.t1 AT5G54610 33.861 316 156 7 8 286 4 303 5.40e-46 162
MS.gene050270.t1 AT1G14480 35.517 290 168 4 8 296 4 275 5.33e-43 153
MS.gene050270.t1 AT5G51160 26.119 268 160 6 63 296 35 298 1.14e-20 92.8
MS.gene050270.t1 AT5G15500 28.378 222 121 3 110 300 1 215 2.64e-17 82.0
MS.gene050270.t1 AT2G01680 27.941 204 121 5 44 228 97 293 1.19e-13 72.0
MS.gene050270.t1 AT4G03500 24.917 301 159 8 9 292 251 501 7.26e-13 69.7
MS.gene050270.t1 AT4G03500 24.917 301 159 8 9 292 228 478 7.46e-13 69.7
MS.gene050270.t1 AT4G03500 24.917 301 159 8 9 292 228 478 7.46e-13 69.7
MS.gene050270.t1 AT4G03460 25.000 296 164 9 9 292 236 485 1.77e-11 65.5
MS.gene050270.t1 AT4G03460 25.170 294 162 9 11 292 206 453 1.84e-11 65.5

Find 63 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCGTTGGTGAAGTTTATC+AGG 0.285495 7.1:+52472491 MS.gene050270:CDS
AGGATCAAAGACCACTATTA+TGG 0.320397 7.1:+52472353 MS.gene050270:CDS
CTTCGATTGTTGGTAAGTAC+TGG 0.324415 7.1:+52472189 MS.gene050270:CDS
AGCTTTCAGTTTATCAAGAT+TGG 0.345596 7.1:-52470803 None:intergenic
AGCGAGAAACCATCCTCTTT+TGG 0.350553 7.1:-52471050 None:intergenic
CAATTTGAATTACTGCATAA+AGG 0.361525 7.1:-52470852 None:intergenic
AAAGACCTTGTTCGAGTTCA+AGG 0.377835 7.1:+52471087 MS.gene050270:CDS
CTTTGCATATCGCCGCATCT+AGG 0.387295 7.1:+52470923 MS.gene050270:CDS
GGGAGTCAGCGTTGATTGAT+AGG 0.399734 7.1:-52472472 None:intergenic
ATTTGAAACCTTCATTTGCT+TGG 0.424279 7.1:+52470977 MS.gene050270:CDS
AGCACAGGCGCTTCGATTGT+TGG 0.424869 7.1:+52472179 MS.gene050270:CDS
TCGCATTGAAAGAAATATAT+CGG 0.432489 7.1:+52472398 MS.gene050270:CDS
TTTGCATATCGCCGCATCTA+GGG 0.439653 7.1:+52470924 MS.gene050270:CDS
ATAATAGTGGTCTTTGATCC+TGG 0.440453 7.1:-52472351 None:intergenic
GCATCTCCGGTTTGCCATTG+AGG 0.441755 7.1:+52470948 MS.gene050270:CDS
CGAATCTATAATCTCTAGAA+TGG 0.451551 7.1:-52470881 None:intergenic
TTTCAAATTCATAACCTCAA+TGG 0.456133 7.1:-52470962 None:intergenic
CTTCATCTTGCAAGTCAAAT+CGG 0.456236 7.1:+52471129 MS.gene050270:CDS
ACCTGATAAACTTCACCAAC+GGG 0.467209 7.1:-52472492 None:intergenic
CCCCACAGTCACATCTTGAA+TGG 0.481975 7.1:-52471196 None:intergenic
CTGAAAGCTGCAGCTGAAGC+GGG 0.490793 7.1:+52470817 MS.gene050270:CDS
TTTAGCTTCCAAGCAAATGA+AGG 0.492400 7.1:-52470985 None:intergenic
TAGCGCAGAAATGTGCAAAA+TGG 0.492943 7.1:-52471365 None:intergenic
TCATAACCTCAATGGCAAAC+CGG 0.496377 7.1:-52470954 None:intergenic
AAGAGTATATTATTTAGTGC+TGG 0.498908 7.1:+52472279 MS.gene050270:CDS
CTTAGGAGAAATATCGAAAG+AGG 0.502785 7.1:+52471289 MS.gene050270:intron
AAAACCTAGCTTAGAAGTCA+TGG 0.503544 7.1:+52472305 MS.gene050270:CDS
CTATGCAAAATGACCAAAAG+AGG 0.517456 7.1:+52471037 MS.gene050270:CDS
TGCGCTAAGCAACGAGCCAC+AGG 0.517940 7.1:+52471381 MS.gene050270:CDS
GTCACATCTTGAATGGAATC+CGG 0.521024 7.1:-52471189 None:intergenic
TTGCATATCGCCGCATCTAG+GGG 0.527689 7.1:+52470925 MS.gene050270:CDS
AAGTACTGGGATAAATTTGA+AGG 0.534665 7.1:+52472203 MS.gene050270:CDS
ATTCAAGATGTGACTGTGGG+GGG 0.535609 7.1:+52471198 MS.gene050270:CDS
CGGAGAAGCAACGCAACACT+TGG 0.536689 7.1:+52472418 MS.gene050270:CDS
TCCATTCAAGATGTGACTGT+GGG 0.544369 7.1:+52471195 MS.gene050270:CDS
TTCGATTGTTGGTAAGTACT+GGG 0.548072 7.1:+52472190 MS.gene050270:CDS
ACTGAAAGCTGCAGCTGAAG+CGG 0.553330 7.1:+52470816 MS.gene050270:CDS
ATTTGACTTGCAAGATGAAG+AGG 0.554003 7.1:-52471126 None:intergenic
AAGACCTTGTTCGAGTTCAA+GGG 0.554891 7.1:+52471088 MS.gene050270:CDS
GTTCGAGTTCAAGGGAGAGA+AGG 0.562197 7.1:+52471096 MS.gene050270:CDS
TATACTCTTGTTCTCTAGAG+TGG 0.567180 7.1:-52472265 None:intergenic
GCATCCATGACTTCTAAGCT+AGG 0.571365 7.1:-52472309 None:intergenic
CTCTCCCTTGAACTCGAACA+AGG 0.580165 7.1:-52471092 None:intergenic
CATGAATTACTATGTAGCAC+AGG 0.596638 7.1:+52472164 MS.gene050270:CDS
TTCAAGATGTGACTGTGGGG+GGG 0.598053 7.1:+52471199 MS.gene050270:CDS
GCAAAATGACCAAAAGAGGA+TGG 0.601826 7.1:+52471041 MS.gene050270:CDS
CAATCAACGCTGACTCCCGT+TGG 0.604040 7.1:+52472477 MS.gene050270:CDS
CTAGATGCGGCGATATGCAA+AGG 0.606329 7.1:-52470922 None:intergenic
CATTCAAGATGTGACTGTGG+GGG 0.609812 7.1:+52471197 MS.gene050270:CDS
TAAGAACAATGAAGCAGTCG+AGG 0.609953 7.1:+52473573 MS.gene050270:CDS
AACCTGATAAACTTCACCAA+CGG 0.612671 7.1:-52472493 None:intergenic
CCTGGTTTATCTGCAAGTGT+AGG 0.615113 7.1:-52472333 None:intergenic
CATACTAAATCACAAGGATG+AGG 0.615450 7.1:+52471333 MS.gene050270:CDS
CCTACACTTGCAGATAAACC+AGG 0.621787 7.1:+52472333 MS.gene050270:CDS
TTCCATTCAAGATGTGACTG+TGG 0.644137 7.1:+52471194 MS.gene050270:CDS
CCATTCAAGATGTGACTGTG+GGG 0.654082 7.1:+52471196 MS.gene050270:CDS
TGCATATCGCCGCATCTAGG+GGG 0.655530 7.1:+52470926 MS.gene050270:CDS
ACTCTTGTTCTCTAGAGTGG+CGG 0.656146 7.1:-52472262 None:intergenic
GCTTGGAAGCTAAATCCGCA+AGG 0.656349 7.1:+52470994 MS.gene050270:CDS
AGTCAGCGTTGATTGATAGG+TGG 0.659373 7.1:-52472469 None:intergenic
TTTGCATAGCGAGATGAATG+GGG 0.662734 7.1:-52471023 None:intergenic
TGAATGGGGCTGAATCCTTG+CGG 0.670822 7.1:-52471009 None:intergenic
ATATAACATACTAAATCACA+AGG 0.679043 7.1:+52471327 MS.gene050270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTAAATAATTAAACATATA+TGG - chr7.1:52473292-52473311 None:intergenic 10.0%
!!! TTAAATTATTAATTGTTGTT+TGG + chr7.1:52473149-52473168 MS.gene050270:intron 10.0%
!!! TTTTTTAAATATTGAAATCT+CGG - chr7.1:52471594-52471613 None:intergenic 10.0%
!! AAATAATTAAACATATATGG+TGG - chr7.1:52473289-52473308 None:intergenic 15.0%
!! AACGAAGAAATAATATAAAA+GGG - chr7.1:52471768-52471787 None:intergenic 15.0%
!! CACATATATTATGTATATAA+AGG + chr7.1:52471895-52471914 MS.gene050270:intron 15.0%
!! GTTTAATTATTTAAGAGTTT+AGG + chr7.1:52473297-52473316 MS.gene050270:intron 15.0%
!!! GTTATTTATTTTTTATTGAC+AGG - chr7.1:52471793-52471812 None:intergenic 15.0%
!!! TTTAGTTTACTATAGATTTT+TGG + chr7.1:52472849-52472868 MS.gene050270:intron 15.0%
!! AAAACTACTAAATATATGAC+AGG - chr7.1:52471413-52471432 None:intergenic 20.0%
!! ATATAACATACTAAATCACA+AGG + chr7.1:52471327-52471346 MS.gene050270:CDS 20.0%
!! CAACGAAGAAATAATATAAA+AGG - chr7.1:52471769-52471788 None:intergenic 20.0%
! AAACAATGATAACAATGACA+AGG - chr7.1:52473048-52473067 None:intergenic 25.0%
! ACTTCATCTCATAAGTTATA+AGG + chr7.1:52471477-52471496 MS.gene050270:intron 25.0%
! AGTATTGCTATATAGTTGAT+AGG - chr7.1:52472653-52472672 None:intergenic 25.0%
! ATCATGGTTTAATTAGATTG+CGG - chr7.1:52472068-52472087 None:intergenic 25.0%
! CAATCTAATTAAACCATGAT+AGG + chr7.1:52472068-52472087 MS.gene050270:intron 25.0%
! CAATTTGAATTACTGCATAA+AGG - chr7.1:52470855-52470874 None:intergenic 25.0%
! GGTGAAAAATAAAAACTTTG+AGG + chr7.1:52471243-52471262 MS.gene050270:intron 25.0%
! TCGCATTGAAAGAAATATAT+CGG + chr7.1:52472398-52472417 MS.gene050270:CDS 25.0%
! TTTCAAATTCATAACCTCAA+TGG - chr7.1:52470965-52470984 None:intergenic 25.0%
!! AAGAGTATATTATTTAGTGC+TGG + chr7.1:52472279-52472298 MS.gene050270:CDS 25.0%
!! CAACATTTTATCCATAATAG+TGG - chr7.1:52472367-52472386 None:intergenic 25.0%
!! CACATTTTCTTGCAATATAA+AGG - chr7.1:52471961-52471980 None:intergenic 25.0%
!! TTGCAACAATGTTTTATCTA+TGG - chr7.1:52472905-52472924 None:intergenic 25.0%
!!! CTATATAGTTGATAGGAAAA+AGG - chr7.1:52472646-52472665 None:intergenic 25.0%
!!! TAAATTACTTTTTGCTTGTC+CGG + chr7.1:52471170-52471189 MS.gene050270:CDS 25.0%
!!! TTTTTAGTATTGTTGCAACT+GGG + chr7.1:52472812-52472831 MS.gene050270:intron 25.0%
!!! TTTTTTAGTATTGTTGCAAC+TGG + chr7.1:52472811-52472830 MS.gene050270:intron 25.0%
AAAGAAATTCCAACACACAT+TGG - chr7.1:52473260-52473279 None:intergenic 30.0%
AAATGAAACGGTGTTTCATA+TGG - chr7.1:52473376-52473395 None:intergenic 30.0%
AATATTCACAAGTAGTGAAC+TGG - chr7.1:52472104-52472123 None:intergenic 30.0%
ACTACTAAATATATGACAGG+AGG - chr7.1:52471410-52471429 None:intergenic 30.0%
ACTCTTATAAATCTGTGCAA+TGG + chr7.1:52473471-52473490 MS.gene050270:intron 30.0%
AGATAAAACATTGTTGCAAC+AGG + chr7.1:52472906-52472925 MS.gene050270:intron 30.0%
AGCTTTCAGTTTATCAAGAT+TGG - chr7.1:52470806-52470825 None:intergenic 30.0%
ATCATAACATTGTCATGTGT+AGG - chr7.1:52472775-52472794 None:intergenic 30.0%
TCATAACATTGTCATGTGTA+GGG - chr7.1:52472774-52472793 None:intergenic 30.0%
! ATAGAGAGAAGGTATAACAA+AGG - chr7.1:52472741-52472760 None:intergenic 30.0%
! ATTTGAAACCTTCATTTGCT+TGG + chr7.1:52470977-52470996 MS.gene050270:CDS 30.0%
! CGAATCTATAATCTCTAGAA+TGG - chr7.1:52470884-52470903 None:intergenic 30.0%
! TAAATCTTGGGTTGTCAATT+CGG - chr7.1:52471512-52471531 None:intergenic 30.0%
! TTTGTTATACCTTCTCTCTA+TGG + chr7.1:52472740-52472759 MS.gene050270:intron 30.0%
!! AAGTACTGGGATAAATTTGA+AGG + chr7.1:52472203-52472222 MS.gene050270:CDS 30.0%
!! ATACAGATCACAATTTGCTA+CGG - chr7.1:52473082-52473101 None:intergenic 30.0%
!! TTAAAGACTAATTCTAGCTC+TGG + chr7.1:52473214-52473233 MS.gene050270:intron 30.0%
AAAACCTAGCTTAGAAGTCA+TGG + chr7.1:52472305-52472324 MS.gene050270:CDS 35.0%
AACCTGATAAACTTCACCAA+CGG - chr7.1:52472496-52472515 None:intergenic 35.0%
AATCCAAATCCAACAACTCA+TGG + chr7.1:52471707-52471726 MS.gene050270:intron 35.0%
AGGATCAAAGACCACTATTA+TGG + chr7.1:52472353-52472372 MS.gene050270:CDS 35.0%
AGTCTTACGATTAAGATCAG+TGG - chr7.1:52471643-52471662 None:intergenic 35.0%
ATAATAGTGGTCTTTGATCC+TGG - chr7.1:52472354-52472373 None:intergenic 35.0%
ATTTCTACCCCAAAAAATGC+TGG + chr7.1:52472564-52472583 MS.gene050270:intron 35.0%
CATAACATTGTCATGTGTAG+GGG - chr7.1:52472773-52472792 None:intergenic 35.0%
CATACTAAATCACAAGGATG+AGG + chr7.1:52471333-52471352 MS.gene050270:CDS 35.0%
CATGAATTACTATGTAGCAC+AGG + chr7.1:52472164-52472183 MS.gene050270:CDS 35.0%
CTATGCAAAATGACCAAAAG+AGG + chr7.1:52471037-52471056 MS.gene050270:CDS 35.0%
CTGGTCCTTTAACTAAGAAA+CGG + chr7.1:52473233-52473252 MS.gene050270:intron 35.0%
CTTAGGAGAAATATCGAAAG+AGG + chr7.1:52471289-52471308 MS.gene050270:intron 35.0%
CTTCATCTTGCAAGTCAAAT+CGG + chr7.1:52471129-52471148 MS.gene050270:CDS 35.0%
GGTAGAAATTGTAGAATTGG+AGG - chr7.1:52472553-52472572 None:intergenic 35.0%
TGAGCTCAACTTATTGTAGA+TGG + chr7.1:52473510-52473529 MS.gene050270:intron 35.0%
TGGATTCAAACTACCTATCA+TGG - chr7.1:52472084-52472103 None:intergenic 35.0%
TGGGGTAGAAATTGTAGAAT+TGG - chr7.1:52472556-52472575 None:intergenic 35.0%
TGGTCTAGTTAACTATCTAG+TGG + chr7.1:52471727-52471746 MS.gene050270:intron 35.0%
TTAACTAGACCATGAGTTGT+TGG - chr7.1:52471719-52471738 None:intergenic 35.0%
TTCTCCTAAGAAAGCAAACA+AGG - chr7.1:52471279-52471298 None:intergenic 35.0%
TTGGTCCGTTTCTTAGTTAA+AGG - chr7.1:52473241-52473260 None:intergenic 35.0%
TTTCTACCCCAAAAAATGCT+GGG + chr7.1:52472565-52472584 MS.gene050270:intron 35.0%
! ATCTCCTTGTTTGCTTTCTT+AGG + chr7.1:52471272-52471291 MS.gene050270:intron 35.0%
! ATTTTGCATAGCGAGATGAA+TGG - chr7.1:52471028-52471047 None:intergenic 35.0%
! TATACTCTTGTTCTCTAGAG+TGG - chr7.1:52472268-52472287 None:intergenic 35.0%
! TTCGATTGTTGGTAAGTACT+GGG + chr7.1:52472190-52472209 MS.gene050270:CDS 35.0%
! TTTAGCTTCCAAGCAAATGA+AGG - chr7.1:52470988-52471007 None:intergenic 35.0%
! TTTCTTACGAGTTGAAGAAG+AGG + chr7.1:52471431-52471450 MS.gene050270:intron 35.0%
! TTTTGCATAGCGAGATGAAT+GGG - chr7.1:52471027-52471046 None:intergenic 35.0%
!! ATTTGACTTGCAAGATGAAG+AGG - chr7.1:52471129-52471148 None:intergenic 35.0%
ACCTGATAAACTTCACCAAC+GGG - chr7.1:52472495-52472514 None:intergenic 40.0%
ACTGTGCGCAATCTAAATCT+TGG - chr7.1:52471525-52471544 None:intergenic 40.0%
AGACCATGAGTTGTTGGATT+TGG - chr7.1:52471713-52471732 None:intergenic 40.0%
AGATTTAGATTGCGCACAGT+TGG + chr7.1:52471525-52471544 MS.gene050270:intron 40.0%
ATACTAATTCTGACCCCAAG+AGG + chr7.1:52472668-52472687 MS.gene050270:intron 40.0%
CAAAGGATAAACCAAACCAC+TGG - chr7.1:52472724-52472743 None:intergenic 40.0%
CAGTTGTGACCTCAATACAA+AGG - chr7.1:52472035-52472054 None:intergenic 40.0%
CCCAAAAAATGCTGGGAAAT+CGG + chr7.1:52472572-52472591 MS.gene050270:intron 40.0%
CCTCAATACAAAGGACTTAG+AGG - chr7.1:52472026-52472045 None:intergenic 40.0%
CCTCTAAGTCCTTTGTATTG+AGG + chr7.1:52472023-52472042 MS.gene050270:intron 40.0%
CTCAACATGATGTGTGTTGT+TGG + chr7.1:52473185-52473204 MS.gene050270:intron 40.0%
CTGTGCGCAATCTAAATCTT+GGG - chr7.1:52471524-52471543 None:intergenic 40.0%
GCAAAATGACCAAAAGAGGA+TGG + chr7.1:52471041-52471060 MS.gene050270:CDS 40.0%
GCAAGAAAATGTGTGTGATG+CGG + chr7.1:52471968-52471987 MS.gene050270:intron 40.0%
GTCACATCTTGAATGGAATC+CGG - chr7.1:52471192-52471211 None:intergenic 40.0%
GTTATACCTTCTCTCTATGG+AGG + chr7.1:52472743-52472762 MS.gene050270:intron 40.0%
TAAGAACAATGAAGCAGTCG+AGG + chr7.1:52473573-52473592 MS.gene050270:CDS 40.0%
TACTAATTCTGACCCCAAGA+GGG + chr7.1:52472669-52472688 MS.gene050270:intron 40.0%
TAGCGCAGAAATGTGCAAAA+TGG - chr7.1:52471368-52471387 None:intergenic 40.0%
TATTGTGCAAATTGACGTCG+AGG - chr7.1:52473446-52473465 None:intergenic 40.0%
TCATAACCTCAATGGCAAAC+CGG - chr7.1:52470957-52470976 None:intergenic 40.0%
TCCATTCAAGATGTGACTGT+GGG + chr7.1:52471195-52471214 MS.gene050270:CDS 40.0%
TGAAACTGCACTGCATATTG+CGG + chr7.1:52471222-52471241 MS.gene050270:intron 40.0%
TTCCATTCAAGATGTGACTG+TGG + chr7.1:52471194-52471213 MS.gene050270:CDS 40.0%
TTGTATTGAGGTCACAACTG+CGG + chr7.1:52472035-52472054 MS.gene050270:intron 40.0%
TTGTGATTGCAATGTCGTTG+CGG + chr7.1:52471997-52472016 MS.gene050270:intron 40.0%
TTTGCATAGCGAGATGAATG+GGG - chr7.1:52471026-52471045 None:intergenic 40.0%
! AAAGACCTTGTTCGAGTTCA+AGG + chr7.1:52471087-52471106 MS.gene050270:CDS 40.0%
! AAGACCTTGTTCGAGTTCAA+GGG + chr7.1:52471088-52471107 MS.gene050270:CDS 40.0%
! CTTCGATTGTTGGTAAGTAC+TGG + chr7.1:52472189-52472208 MS.gene050270:CDS 40.0%
!!! ACCGATTTCCCAGCATTTTT+TGG - chr7.1:52472576-52472595 None:intergenic 40.0%
!!! CCGATTTCCCAGCATTTTTT+GGG - chr7.1:52472575-52472594 None:intergenic 40.0%
!!! CGATTTCCCAGCATTTTTTG+GGG - chr7.1:52472574-52472593 None:intergenic 40.0%
AACAGGAGAAACACCCATCA+AGG + chr7.1:52472923-52472942 MS.gene050270:intron 45.0%
AGAAACACCCATCAAGGTTG+TGG + chr7.1:52472929-52472948 MS.gene050270:intron 45.0%
AGAAACGGACCAATGTGTGT+TGG + chr7.1:52473248-52473267 MS.gene050270:intron 45.0%
ATATGACAGGAGGTTACCTG+TGG - chr7.1:52471400-52471419 None:intergenic 45.0%
ATTCAAGATGTGACTGTGGG+GGG + chr7.1:52471198-52471217 MS.gene050270:CDS 45.0%
CATCAAGGTTGTGGGATAGA+CGG + chr7.1:52472938-52472957 MS.gene050270:intron 45.0%
CATTCAAGATGTGACTGTGG+GGG + chr7.1:52471197-52471216 MS.gene050270:CDS 45.0%
CCATTCAAGATGTGACTGTG+GGG + chr7.1:52471196-52471215 MS.gene050270:CDS 45.0%
CCTACACTTGCAGATAAACC+AGG + chr7.1:52472333-52472352 MS.gene050270:CDS 45.0%
CCTGGTTTATCTGCAAGTGT+AGG - chr7.1:52472336-52472355 None:intergenic 45.0%
GAAACACCCATCAAGGTTGT+GGG + chr7.1:52472930-52472949 MS.gene050270:intron 45.0%
GCATCCATGACTTCTAAGCT+AGG - chr7.1:52472312-52472331 None:intergenic 45.0%
GGTTATCCTCCATAGAGAGA+AGG - chr7.1:52472752-52472771 None:intergenic 45.0%
GTCTATCCCACAACCTTGAT+GGG - chr7.1:52472939-52472958 None:intergenic 45.0%
TTTGCATATCGCCGCATCTA+GGG + chr7.1:52470924-52470943 MS.gene050270:CDS 45.0%
! AGCGAGAAACCATCCTCTTT+TGG - chr7.1:52471053-52471072 None:intergenic 45.0%
! GTGTTCCTCTTTTCCCATAC+CGG + chr7.1:52473417-52473436 MS.gene050270:intron 45.0%
! TCCCGTTGGTGAAGTTTATC+AGG + chr7.1:52472491-52472510 MS.gene050270:CDS 45.0%
!! ACTCTTGTTCTCTAGAGTGG+CGG - chr7.1:52472265-52472284 None:intergenic 45.0%
!! AGTCAGCGTTGATTGATAGG+TGG - chr7.1:52472472-52472491 None:intergenic 45.0%
!! TTGTTTCTGACTTCCACCAG+CGG - chr7.1:52472997-52473016 None:intergenic 45.0%
!! ATTTAAAAAATAAAATGAAA+CGG - chr7.1:52473388-52473407 None:intergenic 5.0%
AATTCTGACCCCAAGAGGGA+GGG + chr7.1:52472673-52472692 MS.gene050270:intron 50.0%
ACTGAAAGCTGCAGCTGAAG+CGG + chr7.1:52470816-52470835 MS.gene050270:CDS 50.0%
AGTCAGCACGAGCAAGATTG+AGG + chr7.1:52471566-52471585 MS.gene050270:intron 50.0%
CAAATTGACGTCGAGGCAAC+CGG - chr7.1:52473439-52473458 None:intergenic 50.0%
CCCCACAGTCACATCTTGAA+TGG - chr7.1:52471199-52471218 None:intergenic 50.0%
CGTCTATCCCACAACCTTGA+TGG - chr7.1:52472940-52472959 None:intergenic 50.0%
CTAGATGCGGCGATATGCAA+AGG - chr7.1:52470925-52470944 None:intergenic 50.0%
CTCTCCCTTGAACTCGAACA+AGG - chr7.1:52471095-52471114 None:intergenic 50.0%
CTTTGCATATCGCCGCATCT+AGG + chr7.1:52470923-52470942 MS.gene050270:CDS 50.0%
GCTTGGAAGCTAAATCCGCA+AGG + chr7.1:52470994-52471013 MS.gene050270:CDS 50.0%
TAAACCAAACCACTGGACCG+CGG - chr7.1:52472717-52472736 None:intergenic 50.0%
TAATTCTGACCCCAAGAGGG+AGG + chr7.1:52472672-52472691 MS.gene050270:intron 50.0%
TGAATGGGGCTGAATCCTTG+CGG - chr7.1:52471012-52471031 None:intergenic 50.0%
TTCAAGATGTGACTGTGGGG+GGG + chr7.1:52471199-52471218 MS.gene050270:CDS 50.0%
TTGCATATCGCCGCATCTAG+GGG + chr7.1:52470925-52470944 MS.gene050270:CDS 50.0%
! GTTCGAGTTCAAGGGAGAGA+AGG + chr7.1:52471096-52471115 MS.gene050270:CDS 50.0%
!! GGGAGTCAGCGTTGATTGAT+AGG - chr7.1:52472475-52472494 None:intergenic 50.0%
AGCACAGGCGCTTCGATTGT+TGG + chr7.1:52472179-52472198 MS.gene050270:CDS 55.0%
CGGAGAAGCAACGCAACACT+TGG + chr7.1:52472418-52472437 MS.gene050270:CDS 55.0%
CTGAAAGCTGCAGCTGAAGC+GGG + chr7.1:52470817-52470836 MS.gene050270:CDS 55.0%
GGCAACCGGTATGGGAAAAG+AGG - chr7.1:52473425-52473444 None:intergenic 55.0%
TGAGGTCACAACTGCGGTTG+CGG + chr7.1:52472041-52472060 MS.gene050270:intron 55.0%
TGCATATCGCCGCATCTAGG+GGG + chr7.1:52470926-52470945 MS.gene050270:CDS 55.0%
! GCATCTCCGGTTTGCCATTG+AGG + chr7.1:52470948-52470967 MS.gene050270:CDS 55.0%
!! CAATCAACGCTGACTCCCGT+TGG + chr7.1:52472477-52472496 MS.gene050270:CDS 55.0%
AGAGAGCCTACCCTCCCTCT+TGG - chr7.1:52472686-52472705 None:intergenic 60.0%
AGAGCCTACCCTCCCTCTTG+GGG - chr7.1:52472684-52472703 None:intergenic 60.0%
GACGTCGAGGCAACCGGTAT+GGG - chr7.1:52473433-52473452 None:intergenic 60.0%
GAGAGCCTACCCTCCCTCTT+GGG - chr7.1:52472685-52472704 None:intergenic 60.0%
GAGGGTAGGCTCTCTAGTCG+TGG + chr7.1:52472691-52472710 MS.gene050270:intron 60.0%
GAGGTCACAACTGCGGTTGC+GGG + chr7.1:52472042-52472061 MS.gene050270:intron 60.0%
TCCACCAGCGGTAGTTCGAG+TGG - chr7.1:52472985-52473004 None:intergenic 60.0%
TCTGCCACTCGAACTACCGC+TGG + chr7.1:52472978-52472997 MS.gene050270:intron 60.0%
TGACGTCGAGGCAACCGGTA+TGG - chr7.1:52473434-52473453 None:intergenic 60.0%
TGCGCTAAGCAACGAGCCAC+AGG + chr7.1:52471381-52471400 MS.gene050270:CDS 60.0%
AGGCTCTCTAGTCGTGGCCG+CGG + chr7.1:52472697-52472716 MS.gene050270:intron 65.0%
CCGGAGATGCCCCCTAGATG+CGG - chr7.1:52470938-52470957 None:intergenic 65.0%
CTGACCCCAAGAGGGAGGGT+AGG + chr7.1:52472677-52472696 MS.gene050270:intron 65.0%
GCCACTCGAACTACCGCTGG+TGG + chr7.1:52472981-52473000 MS.gene050270:intron 65.0%
!! CCGCATCTAGGGGGCATCTC+CGG + chr7.1:52470935-52470954 MS.gene050270:CDS 65.0%
GTGGCCGCGGTCCAGTGGTT+TGG + chr7.1:52472710-52472729 MS.gene050270:intron 70.0%
TAGTCGTGGCCGCGGTCCAG+TGG + chr7.1:52472705-52472724 MS.gene050270:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 52470793 52473645 52470793 ID=MS.gene050270
chr7.1 mRNA 52470793 52473645 52470793 ID=MS.gene050270.t1;Parent=MS.gene050270
chr7.1 exon 52470793 52471220 52470793 ID=MS.gene050270.t1.exon1;Parent=MS.gene050270.t1
chr7.1 CDS 52470793 52471220 52470793 ID=cds.MS.gene050270.t1;Parent=MS.gene050270.t1
chr7.1 exon 52471294 52471402 52471294 ID=MS.gene050270.t1.exon2;Parent=MS.gene050270.t1
chr7.1 CDS 52471294 52471402 52471294 ID=cds.MS.gene050270.t1;Parent=MS.gene050270.t1
chr7.1 exon 52472162 52472512 52472162 ID=MS.gene050270.t1.exon3;Parent=MS.gene050270.t1
chr7.1 CDS 52472162 52472512 52472162 ID=cds.MS.gene050270.t1;Parent=MS.gene050270.t1
chr7.1 exon 52473529 52473645 52473529 ID=MS.gene050270.t1.exon4;Parent=MS.gene050270.t1
chr7.1 CDS 52473529 52473645 52473529 ID=cds.MS.gene050270.t1;Parent=MS.gene050270.t1
Gene Sequence

>MS.gene050270

ATGAGCACAACCAATCTTGATAAACTGAAAGCTGCAGCTGAAGCGGGTAATATAGACATCCTTTATGCAGTAATTCAAATTGATTCGTCCATTCTAGAGATTATAGATTCGAATCAGTTTGTTGAAACTCCTTTGCATATCGCCGCATCTAGGGGGCATCTCCGGTTTGCCATTGAGGTTATGAATTTGAAACCTTCATTTGCTTGGAAGCTAAATCCGCAAGGATTCAGCCCCATTCATCTCGCTATGCAAAATGACCAAAAGAGGATGGTTTCTCGCTTTGTTGACATTAATAAAGACCTTGTTCGAGTTCAAGGGAGAGAAGGCTTAACGCCTCTTCATCTTGCAAGTCAAATCGGTGAAGTTGAACTTTTAGCTAAATTACTTTTTGCTTGTCCGGATTCCATTCAAGATGTGACTGTGGGGGGGTGAAACTGCACTGCATATTGCGGTGAAAAATAAAAACTTTGAGGCTCTTCATCTCCTTGTTTGCTTTCTTAGGAGAAATATCGAAAGAGGTGCTAGAGAGTTTGAATATAACATACTAAATCACAAGGATGAGGATGACAACACCATTTTGCACATTTCTGCGCTAAGCAACGAGCCACAGGTAACCTCCTGTCATATATTTAGTAGTTTTTCTTACGAGTTGAAGAAGAGGAAATTATATTTGAGCATATTTAAACTTCATCTCATAAGTTATAAGGTCAAACTCACCGAATTGACAACCCAAGATTTAGATTGCGCACAGTTGGAAATCTATGCATTTATATAGTCAGCACGAGCAAGATTGAGGATCCGAGATTTCAATATTTAAAAAATAAAATCTGCATGTTTCTTGCAATGTCCACTGATCTTAATCGTAAGACTAGCGATGTGCTAACTGTATAAATGCATAGAATTTCATCGTGTGCAATCCAAATCCAACAACTCATGGTCTAGTTAACTATCTAGTGGCTTCTATCTCATGTTCCCTTTTATATTATTTCTTCGTTGTCCTGTCAATAAAAAATAAATAACACATCATAAAACATATCTCATCTTGCAAATATAACGTGTTTTTTAATTTGTCATTTGTATCGAGAAAACATGAAAGAAAAGACACATATATTATGTATATAAAGGACATAGCTTGCACAATTTTGAATTGTTGCTATGCTGAGAACCTTTATATTGCAAGAAAATGTGTGTGATGCGGTCAAAATTGTGATTGCAATGTCGTTGCGGAGACCTCTAAGTCCTTTGTATTGAGGTCACAACTGCGGTTGCGGGCCGCAATCTAATTAAACCATGATAGGTAGTTTGAATCCAGTTCACTACTTGTGAATATTTTAGTTGCTAATATGAATAATCTCTAACAATTGTATAGTTCATGAATTACTATGTAGCACAGGCGCTTCGATTGTTGGTAAGTACTGGGATAAATTTGAAGGCAAAGAATTTGAAGAACAAAACAGCATTAGACATAGCCGCCACTCTAGAGAACAAGAGTATATTATTTAGTGCTGGATCAAAACCTAGCTTAGAAGTCATGGATGCTCCTACACTTGCAGATAAACCAGGATCAAAGACCACTATTATGGATAAAATGTTGATTTACGTACGTCGCATTGAAAGAAATATATCGGAGAAGCAACGCAACACTTGGTTGATAATTGCGACTCTTGTTGCAACAGCCACCTATCAATCAACGCTGACTCCCGTTGGTGAAGTTTATCAGGTTAGTGCTAGTAGTGACAATAATGTGAACAACACTTCCTCCAATTCTACAATTTCTACCCCAAAAAATGCTGGGAAATCGGTCTTGTCAAAAGTTGATTTCTTTTTGTTTTCATATATGAATATGATTTCCTTTTTCCTATCAACTATATAGCAATACTAATTCTGACCCCAAGAGGGAGGGTAGGCTCTCTAGTCGTGGCCGCGGTCCAGTGGTTTGGTTTATCCTTTGTTATACCTTCTCTCTATGGAGGATAACCCCTACACATGACAATGTTATGATGTTTAATTTAATTTTCTTTTTTAGTATTGTTGCAACTGGGATTTGCTGCATTATTTTAGTTTACTATAGATTTTTGGCTTCTGCACAATAGTAACAAATTGAATAGACCATAGATAAAACATTGTTGCAACAGGAGAAACACCCATCAAGGTTGTGGGATAGACGGTACAATCGCTAATGAAATCTGCCACTCGAACTACCGCTGGTGGAAGTCAGAAACAACGATATCGCAACGTTAATTTGCAGTTTTCCTTGTCATTGTTATCATTGTTTCTTTTCAACAACCGTAGCAAATTGTGATCTGTATATTAATTGTCATCTTAATCATATTTGTATTTATTGAATGTATGTGTATTAAATTATTAATTGTTGTTTGGAAGAAAAATATTACTCAACATGATGTGTGTTGTTGGTCTTTTTTAAAGACTAATTCTAGCTCTGGTCCTTTAACTAAGAAACGGACCAATGTGTGTTGGAATTTCTTTTATACTCCACCATATATGTTTAATTATTTAAGAGTTTAGGTATGATTGTATTTAAATCATTAAAGTTATTTTTTAAAATGAATGAGCTATTTACCATATGAAACACCGTTTCATTTTATTTTTTAAATGCTGAGAATGTGTTCCTCTTTTCCCATACCGGTTGCCTCGACGTCAATTTGCACAATACTTAAACTCTTATAAATCTGTGCAATGGATCTTTATAGTATAACTGAGCTCAACTTATTGTAGATGGATTCACAACATCTACTTCTGATATTGACTATACTGCATATTAAGAACAATGAAGCAGTCGAGGAAATCAACGATGAAGATGAAACTGAAAGAAAAGCTCTAACTCAGAATTGA

Protein sequence

>MS.gene050270.t1

MSTTNLDKLKAAAEAGNIDILYAVIQIDSSILEIIDSNQFVETPLHIAASRGHLRFAIEVMNLKPSFAWKLNPQGFSPIHLAMQNDQKRMVSRFVDINKDLVRVQGREGLTPLHLASQIGEVELLAKLLFACPDSIQDVTVGGRNIERGAREFEYNILNHKDEDDNTILHISALSNEPQFMNYYVAQALRLLVSTGINLKAKNLKNKTALDIAATLENKSILFSAGSKPSLEVMDAPTLADKPGSKTTIMDKMLIYVRRIERNISEKQRNTWLIIATLVATATYQSTLTPVGEVYQMDSQHLLLILTILHIKNNEAVEEINDEDETERKALTQN