Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71122.t1 | XP_003598604.2 | 57.4 | 326 | 126 | 2 | 1 | 315 | 1 | 324 | 1.10E-78 | 303.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71122.t1 | Q8GYH5 | 45.4 | 306 | 152 | 5 | 9 | 305 | 4 | 303 | 4.3e-18 | 93.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71122.t1 | G7IYT6 | 57.4 | 326 | 126 | 2 | 1 | 315 | 1 | 324 | 8.2e-79 | 303.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71122.t1 | MTR_8g072510 | 74.132 | 317 | 80 | 1 | 1 | 317 | 1 | 315 | 4.06e-168 | 475 |
MS.gene71122.t1 | MTR_8g039620 | 71.562 | 320 | 84 | 3 | 2 | 317 | 6 | 322 | 3.22e-157 | 447 |
MS.gene71122.t1 | MTR_3g016210 | 67.178 | 326 | 94 | 2 | 1 | 315 | 1 | 324 | 3.30e-154 | 439 |
MS.gene71122.t1 | MTR_7g451420 | 67.732 | 313 | 99 | 1 | 3 | 315 | 2 | 312 | 4.91e-150 | 424 |
MS.gene71122.t1 | MTR_7g021090 | 67.508 | 317 | 89 | 3 | 4 | 317 | 3 | 308 | 5.00e-150 | 427 |
MS.gene71122.t1 | MTR_8g062410 | 69.497 | 318 | 87 | 4 | 1 | 317 | 1 | 309 | 1.57e-146 | 420 |
MS.gene71122.t1 | MTR_1g059930 | 66.978 | 321 | 98 | 3 | 1 | 317 | 1 | 317 | 6.14e-146 | 418 |
MS.gene71122.t1 | MTR_8g073260 | 63.291 | 316 | 113 | 2 | 1 | 315 | 1 | 314 | 2.19e-142 | 409 |
MS.gene71122.t1 | MTR_8g068990 | 64.650 | 314 | 90 | 5 | 8 | 317 | 10 | 306 | 1.98e-139 | 402 |
MS.gene71122.t1 | MTR_8g069880 | 61.736 | 311 | 115 | 3 | 6 | 315 | 3 | 310 | 6.50e-125 | 365 |
MS.gene71122.t1 | MTR_8g040930 | 64.684 | 269 | 90 | 2 | 52 | 317 | 1 | 267 | 1.12e-120 | 352 |
MS.gene71122.t1 | MTR_8g041240 | 64.684 | 269 | 90 | 2 | 52 | 317 | 1 | 267 | 1.12e-120 | 352 |
MS.gene71122.t1 | MTR_8g467780 | 57.278 | 316 | 123 | 3 | 10 | 315 | 11 | 324 | 7.59e-117 | 345 |
MS.gene71122.t1 | MTR_8g066670 | 58.861 | 316 | 125 | 4 | 1 | 315 | 1067 | 1378 | 1.63e-112 | 356 |
MS.gene71122.t1 | MTR_3g105650 | 50.160 | 313 | 144 | 3 | 8 | 312 | 3 | 311 | 1.05e-102 | 308 |
MS.gene71122.t1 | MTR_8g073275 | 43.731 | 327 | 109 | 6 | 52 | 315 | 1 | 315 | 3.92e-77 | 243 |
MS.gene71122.t1 | MTR_7g099580 | 26.623 | 308 | 173 | 8 | 13 | 315 | 15 | 274 | 2.80e-28 | 112 |
MS.gene71122.t1 | MTR_1g069110 | 27.922 | 308 | 195 | 10 | 13 | 315 | 21 | 306 | 1.93e-26 | 108 |
MS.gene71122.t1 | MTR_7g099570 | 29.843 | 191 | 120 | 4 | 13 | 198 | 12 | 193 | 4.16e-19 | 88.2 |
MS.gene71122.t1 | MTR_1g115575 | 27.667 | 300 | 162 | 9 | 45 | 312 | 169 | 445 | 3.74e-18 | 85.5 |
MS.gene71122.t1 | MTR_5g085480 | 27.055 | 292 | 187 | 9 | 10 | 288 | 214 | 492 | 1.23e-17 | 84.0 |
MS.gene71122.t1 | MTR_5g085480 | 27.055 | 292 | 187 | 9 | 10 | 288 | 54 | 332 | 1.50e-17 | 83.6 |
MS.gene71122.t1 | MTR_2g101310 | 27.700 | 213 | 136 | 4 | 41 | 245 | 137 | 339 | 3.82e-17 | 82.4 |
MS.gene71122.t1 | MTR_2g101310 | 27.700 | 213 | 136 | 4 | 41 | 245 | 137 | 339 | 4.39e-17 | 82.0 |
MS.gene71122.t1 | MTR_2g101320 | 27.103 | 214 | 136 | 4 | 41 | 245 | 137 | 339 | 3.38e-16 | 79.7 |
MS.gene71122.t1 | MTR_5g085500 | 33.121 | 157 | 93 | 4 | 79 | 231 | 8 | 156 | 1.08e-15 | 77.8 |
MS.gene71122.t1 | MTR_7g117620 | 26.786 | 224 | 146 | 4 | 45 | 264 | 119 | 328 | 1.58e-14 | 74.3 |
MS.gene71122.t1 | MTR_4g062100 | 24.012 | 329 | 205 | 8 | 10 | 311 | 74 | 384 | 6.30e-14 | 72.8 |
MS.gene71122.t1 | MTR_5g085810 | 26.389 | 216 | 111 | 9 | 20 | 231 | 315 | 486 | 2.52e-12 | 67.8 |
MS.gene71122.t1 | MTR_2g096190 | 21.526 | 367 | 206 | 11 | 10 | 311 | 31 | 380 | 1.71e-11 | 65.1 |
MS.gene71122.t1 | MTR_2g096190 | 26.203 | 187 | 130 | 3 | 5 | 185 | 100 | 284 | 8.91e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71122.t1 | AT4G10720 | 41.905 | 315 | 173 | 3 | 9 | 315 | 4 | 316 | 2.05e-80 | 250 |
MS.gene71122.t1 | AT4G10720 | 41.905 | 315 | 173 | 3 | 9 | 315 | 4 | 316 | 6.58e-80 | 250 |
MS.gene71122.t1 | AT1G14480 | 39.748 | 317 | 179 | 3 | 9 | 315 | 4 | 318 | 3.02e-73 | 233 |
MS.gene71122.t1 | AT1G14500 | 38.608 | 316 | 183 | 3 | 9 | 315 | 4 | 317 | 7.35e-73 | 231 |
MS.gene71122.t1 | AT5G54620 | 42.122 | 311 | 165 | 5 | 9 | 309 | 4 | 309 | 1.36e-71 | 228 |
MS.gene71122.t1 | AT5G15500 | 39.683 | 315 | 174 | 5 | 10 | 313 | 6 | 315 | 8.92e-68 | 219 |
MS.gene71122.t1 | AT5G54610 | 37.134 | 307 | 178 | 6 | 9 | 306 | 4 | 304 | 6.75e-62 | 203 |
MS.gene71122.t1 | AT1G14480 | 34.069 | 317 | 154 | 4 | 9 | 315 | 4 | 275 | 1.20e-50 | 172 |
MS.gene71122.t1 | AT5G51160 | 29.091 | 275 | 169 | 5 | 64 | 319 | 35 | 302 | 8.07e-29 | 115 |
MS.gene71122.t1 | AT5G15500 | 34.112 | 214 | 125 | 5 | 111 | 313 | 1 | 209 | 1.43e-26 | 107 |
MS.gene71122.t1 | AT1G34050 | 25.368 | 272 | 183 | 6 | 54 | 315 | 162 | 423 | 7.37e-20 | 90.5 |
MS.gene71122.t1 | AT4G03460 | 26.974 | 304 | 148 | 10 | 20 | 312 | 214 | 454 | 3.06e-18 | 85.9 |
MS.gene71122.t1 | AT4G03460 | 26.974 | 304 | 148 | 10 | 20 | 312 | 246 | 486 | 3.66e-18 | 85.5 |
MS.gene71122.t1 | AT4G03500 | 28.000 | 225 | 126 | 6 | 99 | 312 | 280 | 479 | 6.77e-18 | 84.7 |
MS.gene71122.t1 | AT4G03500 | 28.000 | 225 | 126 | 6 | 99 | 312 | 280 | 479 | 6.77e-18 | 84.7 |
MS.gene71122.t1 | AT4G03500 | 28.000 | 225 | 126 | 6 | 99 | 312 | 303 | 502 | 7.03e-18 | 84.7 |
MS.gene71122.t1 | AT5G54710 | 27.925 | 265 | 148 | 10 | 80 | 315 | 246 | 496 | 7.16e-15 | 75.5 |
MS.gene71122.t1 | AT5G54710 | 27.925 | 265 | 148 | 10 | 80 | 315 | 201 | 451 | 7.62e-15 | 75.5 |
MS.gene71122.t1 | AT1G05640 | 25.694 | 288 | 180 | 8 | 45 | 311 | 191 | 465 | 2.66e-13 | 70.9 |
MS.gene71122.t1 | AT3G09550 | 23.964 | 338 | 195 | 9 | 10 | 312 | 147 | 457 | 7.43e-13 | 69.7 |
MS.gene71122.t1 | AT3G09550 | 23.964 | 338 | 195 | 9 | 10 | 312 | 147 | 457 | 7.43e-13 | 69.7 |
MS.gene71122.t1 | AT2G01680 | 21.160 | 293 | 196 | 5 | 45 | 314 | 97 | 377 | 8.04e-13 | 69.3 |
MS.gene71122.t1 | AT3G09550 | 23.964 | 338 | 195 | 9 | 10 | 312 | 154 | 464 | 8.33e-13 | 69.3 |
MS.gene71122.t1 | AT3G12360 | 24.830 | 294 | 178 | 7 | 45 | 312 | 167 | 443 | 1.02e-12 | 68.9 |
MS.gene71122.t1 | AT3G12360 | 24.830 | 294 | 178 | 7 | 45 | 312 | 155 | 431 | 1.12e-12 | 68.9 |
MS.gene71122.t1 | AT4G11000 | 35.833 | 120 | 60 | 3 | 209 | 315 | 3 | 118 | 3.37e-12 | 65.9 |
MS.gene71122.t1 | AT1G03670 | 27.111 | 225 | 124 | 7 | 100 | 312 | 277 | 473 | 2.95e-11 | 64.7 |
MS.gene71122.t1 | AT4G03450 | 26.364 | 220 | 123 | 7 | 109 | 313 | 290 | 485 | 3.81e-11 | 64.3 |
MS.gene71122.t1 | AT4G03450 | 22.857 | 315 | 168 | 9 | 13 | 312 | 230 | 484 | 4.80e-11 | 63.9 |
MS.gene71122.t1 | AT2G31820 | 22.917 | 288 | 188 | 7 | 45 | 311 | 227 | 501 | 9.90e-11 | 63.2 |
Find 66 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAGATGATCCATATATTT+TGG | 0.120968 | 6.1:-19536209 | MS.gene71122:CDS |
TTTACATATTGCTGCATCTA+TGG | 0.170026 | 6.1:-19536152 | MS.gene71122:CDS |
TAAAGAACTTGTTTGCGTTC+AGG | 0.296306 | 6.1:-19535990 | MS.gene71122:CDS |
TCTATAACATCCAAAATATA+TGG | 0.305238 | 6.1:+19536199 | None:intergenic |
GTTCACTTTGTCGCTAAATA+TGG | 0.319131 | 6.1:+19524826 | None:intergenic |
AACATGAACACCACAAATAA+TGG | 0.319946 | 6.1:-19536289 | MS.gene71122:CDS |
TCTGCAAATGTGGGATCATC+TGG | 0.364841 | 6.1:+19524866 | None:intergenic |
AAAGAACTTGTTTGCGTTCA+GGG | 0.365673 | 6.1:-19535989 | MS.gene71122:CDS |
TATTGCTGACATATGTAAAA+TGG | 0.386949 | 6.1:+19535712 | None:intergenic |
ATCAGAGGAGAGGCGCTTAT+AGG | 0.399794 | 6.1:-19535778 | MS.gene71122:CDS |
TTTCAAATTCATAATTTCAA+TGG | 0.401833 | 6.1:+19536114 | None:intergenic |
GTCAAGTATTCAATGGATTC+CGG | 0.412377 | 6.1:+19535887 | None:intergenic |
TCACTTTCTCTTATTGTGTC+CGG | 0.420475 | 6.1:-19535906 | MS.gene71122:CDS |
TTTAACTTCCATGCAAATGA+AGG | 0.442190 | 6.1:+19536091 | None:intergenic |
TAATCGGTCACCATTATTTG+TGG | 0.442809 | 6.1:+19536279 | None:intergenic |
CCCTTCAAGTACTTGTTGGA+TGG | 0.443104 | 6.1:-19535811 | MS.gene71122:CDS |
GGAGTTCTTACTTCTGAGCC+AGG | 0.447228 | 6.1:+19524887 | None:intergenic |
GAGGCCCTTCAAGTACTTGT+TGG | 0.447990 | 6.1:-19535815 | MS.gene71122:CDS |
TGTAAAGGAGTTTCAACAAA+TGG | 0.448723 | 6.1:+19536169 | None:intergenic |
AGCACAGGCACTTCTATTGT+TGG | 0.448831 | 6.1:-19525017 | MS.gene71122:intron |
CATATGTAAAATGGTGTTGC+CGG | 0.452968 | 6.1:+19535721 | None:intergenic |
TCATAATTTCAATGGCAAAC+CGG | 0.455860 | 6.1:+19536122 | None:intergenic |
GCAAAACAACCAAGTACAAA+TGG | 0.463668 | 6.1:-19536035 | MS.gene71122:CDS |
CTGCATCTATGGGATATATC+CGG | 0.476166 | 6.1:-19536141 | MS.gene71122:CDS |
AGCGATACACCATTTGTACT+TGG | 0.477009 | 6.1:+19536026 | None:intergenic |
TGTTGCCGGCCTCATCTCCC+TGG | 0.481772 | 6.1:+19535735 | None:intergenic |
TTACATATTGCTGCATCTAT+GGG | 0.484652 | 6.1:-19536151 | MS.gene71122:CDS |
TTAAAAGTTGCAGCTCAAAC+AGG | 0.490333 | 6.1:-19536259 | MS.gene71122:CDS |
GCCATCCAACAAGTACTTGA+AGG | 0.497429 | 6.1:+19535810 | None:intergenic |
ATTTGAAACCTTCATTTGCA+TGG | 0.498644 | 6.1:-19536099 | MS.gene71122:CDS |
AACTTGTTTGCGTTCAGGGA+AGG | 0.499717 | 6.1:-19535985 | MS.gene71122:CDS |
TCTTAGTTTATCTGCAAATG+TGG | 0.500783 | 6.1:+19524856 | None:intergenic |
TTAAGTGTTGGAGCAAAACC+TGG | 0.501664 | 6.1:-19524905 | MS.gene71122:CDS |
GCAACTGCGATCTATCAATC+AGG | 0.505224 | 6.1:-19524728 | MS.gene71122:CDS |
AAAAGTATATTATTAAGTGT+TGG | 0.508986 | 6.1:-19524917 | MS.gene71122:CDS |
ATTTGACTTGCAAAATGAAG+TGG | 0.509995 | 6.1:+19535950 | None:intergenic |
TGTTAAGAATCAACAATATG+AGG | 0.510561 | 6.1:-19535834 | MS.gene71122:CDS |
TCCCACAGTCAAGTATTCAA+TGG | 0.510811 | 6.1:+19535880 | None:intergenic |
TGCATGGAAGTTAAATCCGC+AGG | 0.517017 | 6.1:-19536083 | MS.gene71122:CDS |
GAGGAGAGGCGCTTATAGGC+AGG | 0.520071 | 6.1:-19535774 | MS.gene71122:CDS |
CTTAGTTTATCTGCAAATGT+GGG | 0.522510 | 6.1:+19524857 | None:intergenic |
ACTTGTTTGCGTTCAGGGAA+GGG | 0.531967 | 6.1:-19535984 | MS.gene71122:CDS |
ATAGATGCAGCAATATGTAA+AGG | 0.555251 | 6.1:+19536154 | None:intergenic |
AGCAATAAGTAATGAGCCGC+AGG | 0.557574 | 6.1:-19535696 | MS.gene71122:intron |
GTTTGCGTTCAGGGAAGGGA+AGG | 0.561470 | 6.1:-19535980 | MS.gene71122:CDS |
TTAAACCAGGGAGATGAGGC+CGG | 0.563541 | 6.1:-19535740 | MS.gene71122:CDS |
CAGAGGAGCAACGTAACACT+TGG | 0.573470 | 6.1:-19524772 | MS.gene71122:CDS |
TCCATTGAATACTTGACTGT+GGG | 0.577587 | 6.1:-19535881 | MS.gene71122:CDS |
AATATTAAACCAGGGAGATG+AGG | 0.579453 | 6.1:-19535744 | MS.gene71122:CDS |
CATCTTGAATTACTGTGTAG+AGG | 0.592515 | 6.1:+19536224 | None:intergenic |
CTAACCTGATAAATTCCACC+AGG | 0.595881 | 6.1:+19524695 | None:intergenic |
CATTTGCAGATAAACTAAGA+AGG | 0.597484 | 6.1:-19524853 | MS.gene71122:CDS |
GGAACATAAAATATTAAACC+AGG | 0.605459 | 6.1:-19535753 | MS.gene71122:CDS |
CCATCCAACAAGTACTTGAA+GGG | 0.609092 | 6.1:+19535811 | None:intergenic |
TTTGCATAGCGAGATGGATG+GGG | 0.612957 | 6.1:+19536053 | None:intergenic |
GCATGGAAGTTAAATCCGCA+GGG | 0.622859 | 6.1:-19536082 | MS.gene71122:CDS |
ATCCATTGAATACTTGACTG+TGG | 0.631324 | 6.1:-19535882 | MS.gene71122:CDS |
CTTGAAAGAAATCAGAGGAG+AGG | 0.660258 | 6.1:-19535788 | MS.gene71122:CDS |
GAACATAAAATATTAAACCA+GGG | 0.671151 | 6.1:-19535752 | MS.gene71122:CDS |
AGTGCTTGCTATGTCTAATG+CGG | 0.681177 | 6.1:+19524949 | None:intergenic |
GATGGCTTGAAAGAAATCAG+AGG | 0.684100 | 6.1:-19535793 | MS.gene71122:CDS |
AACCTGATAAATTCCACCAG+GGG | 0.693447 | 6.1:+19524697 | None:intergenic |
TAACCTGATAAATTCCACCA+GGG | 0.695982 | 6.1:+19524696 | None:intergenic |
CATTAAAAGAAATATGACAG+AGG | 0.706355 | 6.1:-19524789 | MS.gene71122:CDS |
ACCTGATAAATTCCACCAGG+GGG | 0.706697 | 6.1:+19524698 | None:intergenic |
TGGATGGGGCAGAATCCCTG+CGG | 0.743233 | 6.1:+19536067 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 19524094 | 19536308 | 19524094 | ID=MS.gene71122 |
chr6.1 | mRNA | 19524094 | 19536308 | 19524094 | ID=MS.gene71122.t1;Parent=MS.gene71122 |
chr6.1 | exon | 19535697 | 19536308 | 19535697 | ID=MS.gene71122.t1.exon1;Parent=MS.gene71122.t1 |
chr6.1 | CDS | 19535697 | 19536308 | 19535697 | ID=cds.MS.gene71122.t1;Parent=MS.gene71122.t1 |
chr6.1 | exon | 19524700 | 19525032 | 19524700 | ID=MS.gene71122.t1.exon2;Parent=MS.gene71122.t1 |
chr6.1 | CDS | 19524700 | 19525032 | 19524700 | ID=cds.MS.gene71122.t1;Parent=MS.gene71122.t1 |
chr6.1 | exon | 19524094 | 19524108 | 19524094 | ID=MS.gene71122.t1.exon3;Parent=MS.gene71122.t1 |
chr6.1 | CDS | 19524094 | 19524108 | 19524094 | ID=cds.MS.gene71122.t1;Parent=MS.gene71122.t1 |
Gene Sequence |
Protein sequence |