Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24922.t1 | XP_024627459.1 | 72.4 | 439 | 112 | 2 | 1 | 439 | 1 | 430 | 2.10E-118 | 436 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24922.t1 | Q8GYH5 | 34.9 | 424 | 236 | 9 | 9 | 422 | 4 | 397 | 4.9e-15 | 84.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24922.t1 | A0A396GR94 | 72.4 | 439 | 112 | 2 | 1 | 439 | 1 | 430 | 1.5e-118 | 436.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052956 | MS.gene24922 | 0.931462 | 3.65E-94 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24922.t1 | MTR_8g072510 | 72.160 | 449 | 115 | 5 | 1 | 443 | 1 | 445 | 0.0 | 638 |
MS.gene24922.t1 | MTR_8g062410 | 72.028 | 429 | 111 | 2 | 1 | 429 | 1 | 420 | 0.0 | 606 |
MS.gene24922.t1 | MTR_7g021090 | 66.667 | 393 | 123 | 3 | 4 | 395 | 3 | 388 | 0.0 | 523 |
MS.gene24922.t1 | MTR_3g016210 | 60.811 | 444 | 155 | 6 | 1 | 427 | 1 | 442 | 0.0 | 517 |
MS.gene24922.t1 | MTR_8g039620 | 62.937 | 429 | 149 | 6 | 2 | 427 | 6 | 427 | 1.48e-180 | 512 |
MS.gene24922.t1 | MTR_1g059930 | 65.909 | 352 | 119 | 1 | 8 | 359 | 10 | 360 | 6.07e-162 | 464 |
MS.gene24922.t1 | MTR_8g068990 | 63.315 | 368 | 114 | 6 | 8 | 371 | 10 | 360 | 2.97e-156 | 451 |
MS.gene24922.t1 | MTR_8g069880 | 54.709 | 446 | 182 | 7 | 6 | 435 | 3 | 444 | 4.49e-152 | 440 |
MS.gene24922.t1 | MTR_8g066670 | 55.708 | 438 | 189 | 4 | 1 | 438 | 1067 | 1499 | 1.50e-150 | 465 |
MS.gene24922.t1 | MTR_8g073260 | 52.318 | 453 | 197 | 8 | 1 | 450 | 1 | 437 | 1.57e-146 | 426 |
MS.gene24922.t1 | MTR_7g451420 | 66.987 | 312 | 102 | 1 | 3 | 314 | 2 | 312 | 2.71e-144 | 415 |
MS.gene24922.t1 | MTR_8g040930 | 60.665 | 361 | 131 | 7 | 52 | 407 | 1 | 355 | 2.19e-142 | 412 |
MS.gene24922.t1 | MTR_8g041240 | 60.665 | 361 | 131 | 7 | 52 | 407 | 1 | 355 | 2.19e-142 | 412 |
MS.gene24922.t1 | MTR_8g467780 | 54.591 | 403 | 171 | 4 | 9 | 401 | 10 | 410 | 1.10e-138 | 406 |
MS.gene24922.t1 | MTR_3g105650 | 43.309 | 411 | 194 | 6 | 7 | 408 | 2 | 382 | 3.23e-106 | 322 |
MS.gene24922.t1 | MTR_8g073275 | 40.725 | 469 | 195 | 11 | 52 | 453 | 1 | 453 | 9.24e-92 | 286 |
MS.gene24922.t1 | MTR_1g069110 | 28.606 | 416 | 251 | 11 | 10 | 408 | 18 | 404 | 2.21e-35 | 137 |
MS.gene24922.t1 | MTR_7g099580 | 24.916 | 297 | 173 | 7 | 22 | 314 | 24 | 274 | 1.14e-22 | 99.0 |
MS.gene24922.t1 | MTR_7g099570 | 28.986 | 207 | 133 | 3 | 10 | 211 | 9 | 206 | 3.51e-21 | 97.1 |
MS.gene24922.t1 | MTR_2g101320 | 26.577 | 222 | 146 | 3 | 38 | 252 | 134 | 345 | 9.42e-18 | 86.3 |
MS.gene24922.t1 | MTR_7g117620 | 28.205 | 312 | 191 | 11 | 45 | 348 | 119 | 405 | 1.00e-16 | 82.8 |
MS.gene24922.t1 | MTR_2g101310 | 27.368 | 190 | 128 | 2 | 41 | 230 | 137 | 316 | 4.80e-16 | 81.3 |
MS.gene24922.t1 | MTR_1g032100 | 25.517 | 290 | 178 | 5 | 46 | 310 | 95 | 371 | 9.15e-16 | 80.1 |
MS.gene24922.t1 | MTR_2g101310 | 27.368 | 190 | 128 | 2 | 41 | 230 | 137 | 316 | 1.41e-15 | 79.3 |
MS.gene24922.t1 | MTR_8g105260 | 25.532 | 235 | 156 | 2 | 45 | 272 | 101 | 323 | 2.21e-14 | 75.5 |
MS.gene24922.t1 | MTR_5g085500 | 26.829 | 164 | 109 | 3 | 72 | 232 | 1 | 156 | 1.36e-12 | 69.7 |
MS.gene24922.t1 | MTR_4g062100 | 25.773 | 291 | 149 | 10 | 43 | 267 | 32 | 321 | 3.52e-12 | 68.9 |
MS.gene24922.t1 | MTR_1g115575 | 23.148 | 432 | 262 | 12 | 43 | 422 | 132 | 545 | 1.31e-11 | 67.0 |
MS.gene24922.t1 | MTR_7g100390 | 24.740 | 384 | 238 | 13 | 5 | 363 | 46 | 403 | 2.50e-11 | 66.2 |
MS.gene24922.t1 | MTR_2g096190 | 25.000 | 184 | 127 | 2 | 5 | 188 | 100 | 272 | 3.85e-11 | 65.5 |
MS.gene24922.t1 | MTR_5g085830 | 22.595 | 447 | 253 | 14 | 12 | 412 | 281 | 680 | 4.08e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24922.t1 | AT4G10720 | 36.543 | 405 | 232 | 5 | 9 | 404 | 4 | 392 | 1.12e-83 | 265 |
MS.gene24922.t1 | AT1G14480 | 34.423 | 459 | 261 | 9 | 9 | 448 | 4 | 441 | 3.47e-81 | 258 |
MS.gene24922.t1 | AT4G10720 | 39.688 | 320 | 186 | 1 | 9 | 321 | 4 | 323 | 2.09e-79 | 253 |
MS.gene24922.t1 | AT5G15500 | 39.785 | 372 | 203 | 7 | 10 | 374 | 6 | 363 | 1.05e-77 | 249 |
MS.gene24922.t1 | AT1G14500 | 32.135 | 445 | 263 | 6 | 9 | 439 | 4 | 423 | 3.81e-76 | 245 |
MS.gene24922.t1 | AT5G54620 | 35.381 | 407 | 244 | 6 | 9 | 398 | 4 | 408 | 2.25e-73 | 237 |
MS.gene24922.t1 | AT5G54610 | 31.250 | 416 | 242 | 10 | 9 | 413 | 4 | 386 | 6.85e-63 | 210 |
MS.gene24922.t1 | AT1G14480 | 32.589 | 448 | 241 | 12 | 9 | 448 | 4 | 398 | 4.39e-60 | 202 |
MS.gene24922.t1 | AT5G15500 | 35.055 | 271 | 155 | 7 | 111 | 374 | 1 | 257 | 1.58e-35 | 135 |
MS.gene24922.t1 | AT5G51160 | 28.841 | 371 | 218 | 10 | 64 | 404 | 35 | 389 | 3.53e-33 | 130 |
MS.gene24922.t1 | AT4G03500 | 30.876 | 217 | 129 | 5 | 99 | 311 | 280 | 479 | 4.31e-20 | 93.6 |
MS.gene24922.t1 | AT4G03500 | 30.876 | 217 | 129 | 5 | 99 | 311 | 280 | 479 | 4.31e-20 | 93.6 |
MS.gene24922.t1 | AT4G03500 | 30.876 | 217 | 129 | 5 | 99 | 311 | 303 | 502 | 5.16e-20 | 93.6 |
MS.gene24922.t1 | AT4G03490 | 23.884 | 448 | 259 | 13 | 10 | 428 | 201 | 595 | 5.91e-18 | 87.0 |
MS.gene24922.t1 | AT4G03490 | 23.884 | 448 | 259 | 13 | 10 | 428 | 211 | 605 | 6.06e-18 | 87.0 |
MS.gene24922.t1 | AT5G54710 | 26.389 | 432 | 240 | 21 | 66 | 456 | 187 | 581 | 9.94e-18 | 86.3 |
MS.gene24922.t1 | AT5G54710 | 26.389 | 432 | 240 | 21 | 66 | 456 | 232 | 626 | 1.43e-17 | 85.9 |
MS.gene24922.t1 | AT4G03460 | 30.093 | 216 | 127 | 5 | 101 | 311 | 258 | 454 | 1.58e-17 | 85.5 |
MS.gene24922.t1 | AT4G03460 | 30.093 | 216 | 127 | 5 | 101 | 311 | 290 | 486 | 1.59e-17 | 85.9 |
MS.gene24922.t1 | AT1G34050 | 28.517 | 263 | 161 | 6 | 66 | 314 | 174 | 423 | 5.11e-17 | 84.0 |
MS.gene24922.t1 | AT2G01680 | 23.729 | 354 | 212 | 7 | 45 | 372 | 97 | 418 | 5.84e-17 | 83.6 |
MS.gene24922.t1 | AT4G03490 | 27.097 | 310 | 165 | 10 | 10 | 311 | 211 | 467 | 4.64e-16 | 81.3 |
MS.gene24922.t1 | AT5G54700 | 26.774 | 310 | 182 | 11 | 109 | 409 | 30 | 303 | 8.09e-14 | 72.8 |
MS.gene24922.t1 | AT1G03670 | 25.140 | 358 | 201 | 13 | 102 | 434 | 279 | 594 | 1.72e-13 | 73.2 |
MS.gene24922.t1 | AT1G05640 | 27.431 | 288 | 174 | 10 | 45 | 310 | 191 | 465 | 4.86e-13 | 71.6 |
MS.gene24922.t1 | AT1G05640 | 27.811 | 169 | 116 | 2 | 10 | 178 | 226 | 388 | 3.37e-11 | 65.9 |
MS.gene24922.t1 | AT2G24600 | 26.316 | 266 | 157 | 7 | 80 | 314 | 175 | 432 | 7.27e-13 | 70.9 |
MS.gene24922.t1 | AT2G24600 | 26.316 | 266 | 157 | 7 | 80 | 314 | 175 | 432 | 7.27e-13 | 70.9 |
MS.gene24922.t1 | AT2G24600 | 25.606 | 289 | 176 | 8 | 80 | 337 | 175 | 455 | 7.72e-13 | 70.9 |
MS.gene24922.t1 | AT2G24600 | 25.606 | 289 | 176 | 8 | 80 | 337 | 175 | 455 | 7.72e-13 | 70.9 |
MS.gene24922.t1 | AT1G10340 | 27.848 | 237 | 130 | 6 | 110 | 314 | 201 | 428 | 9.44e-13 | 70.9 |
MS.gene24922.t1 | AT1G10340 | 27.848 | 237 | 130 | 6 | 110 | 314 | 205 | 432 | 1.08e-12 | 70.5 |
MS.gene24922.t1 | AT5G60070 | 27.329 | 161 | 114 | 2 | 5 | 164 | 107 | 265 | 1.45e-12 | 70.1 |
MS.gene24922.t1 | AT4G03470 | 22.249 | 409 | 262 | 12 | 61 | 454 | 289 | 656 | 1.83e-12 | 70.1 |
MS.gene24922.t1 | AT3G12360 | 23.516 | 438 | 237 | 16 | 5 | 372 | 73 | 482 | 2.13e-12 | 69.7 |
MS.gene24922.t1 | AT3G12360 | 23.516 | 438 | 237 | 16 | 5 | 372 | 61 | 470 | 2.96e-12 | 69.3 |
MS.gene24922.t1 | AT1G07710 | 26.667 | 210 | 138 | 6 | 5 | 213 | 100 | 294 | 8.08e-11 | 64.7 |
MS.gene24922.t1 | AT1G07710 | 26.667 | 210 | 138 | 6 | 5 | 213 | 100 | 294 | 8.08e-11 | 64.7 |
MS.gene24922.t1 | AT2G31820 | 26.627 | 169 | 118 | 2 | 10 | 178 | 262 | 424 | 8.52e-11 | 64.7 |
Find 81 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAACGAAACGAACCTTTA+AGG | 0.098382 | 4.3:+84498393 | None:intergenic |
CCTGAGAATATGTGCAATTT+TGG | 0.152768 | 4.3:+84498954 | None:intergenic |
GAAGACCTTGTTACAGTTAA+AGG | 0.166635 | 4.3:-84500336 | MS.gene24922:CDS |
TCAAGATGATCCATACATTT+TGG | 0.169848 | 4.3:-84500556 | MS.gene24922:CDS |
TAGGATAGTTAAAGCCTTAA+AGG | 0.173245 | 4.3:-84498407 | MS.gene24922:CDS |
GCCACCCAACAAGTACTTTA+AGG | 0.181314 | 4.3:+84500157 | None:intergenic |
TTTACATACTGCTGCATCTA+TGG | 0.232324 | 4.3:-84500499 | MS.gene24922:CDS |
AAGAGTACATTATTAAGTTT+TGG | 0.272299 | 4.3:-84499009 | MS.gene24922:CDS |
AAGTACTGGCCGTATAAATT+TGG | 0.292145 | 4.3:-84499088 | MS.gene24922:CDS |
TCTTTAACTCCAAATTTATA+CGG | 0.310097 | 4.3:+84499079 | None:intergenic |
AGCGATACACCATATGTTCT+TGG | 0.321709 | 4.3:+84500373 | None:intergenic |
ACTGATTTCCCAGCATTTCC+TGG | 0.328259 | 4.3:+84498715 | None:intergenic |
AGGTTTCAAATTCATAATTT+CGG | 0.346731 | 4.3:+84500458 | None:intergenic |
AAATTTGGAGTTAAAGAATC+TGG | 0.348394 | 4.3:-84499073 | MS.gene24922:CDS |
CTTTCTAGTGGCTTCTCCAA+TGG | 0.372396 | 4.3:-84498584 | MS.gene24922:CDS |
CTCAAAAGAAATACAAATAG+AGG | 0.383728 | 4.3:-84500135 | MS.gene24922:CDS |
TCTACTGACGGTTACATCAT+TGG | 0.385397 | 4.3:+84498352 | None:intergenic |
CAATCGGTCACTATTATTTG+TGG | 0.388470 | 4.3:+84500626 | None:intergenic |
TTTCTAGTGGCTTCTCCAAT+GGG | 0.397944 | 4.3:-84498583 | MS.gene24922:CDS |
TCACTTTCTCATATTGTGTT+CGG | 0.413393 | 4.3:-84500253 | MS.gene24922:CDS |
CTTCTATTGTTGTTAAGTAC+TGG | 0.414455 | 4.3:-84499102 | MS.gene24922:CDS |
CTTCATATTGCTGTTAAGAA+TGG | 0.415776 | 4.3:-84500192 | MS.gene24922:CDS |
CCACCCAACAAGTACTTTAA+GGG | 0.430505 | 4.3:+84500158 | None:intergenic |
TCTATACGCTCCAAAATGTA+TGG | 0.437756 | 4.3:+84500546 | None:intergenic |
GCTATTGTTCTACTTGGTAA+TGG | 0.440534 | 4.3:+84498607 | None:intergenic |
TGATCTCTGGAGTGCTTGCT+AGG | 0.445586 | 4.3:+84499031 | None:intergenic |
TGTAAAGGAGTTTCAACAAA+TGG | 0.448723 | 4.3:+84500516 | None:intergenic |
AGAAAGGCTATTGTTCTACT+TGG | 0.451000 | 4.3:+84498601 | None:intergenic |
TCATGGAAATGACATGTGTA+GGG | 0.452409 | 4.3:+84498518 | None:intergenic |
GAGGCCCTTAAAGTACTTGT+TGG | 0.455376 | 4.3:-84500162 | MS.gene24922:CDS |
GCAAAACAACCAAGAACATA+TGG | 0.456371 | 4.3:-84500382 | MS.gene24922:CDS |
TTTAGCTTCAAAGCAAATGA+AGG | 0.467344 | 4.3:+84500438 | None:intergenic |
CCAAAATTGCACATATTCTC+AGG | 0.473301 | 4.3:-84498954 | MS.gene24922:CDS |
CGCTAAAACTGATACAGAAA+AGG | 0.475632 | 4.3:+84498645 | None:intergenic |
AGGCCCTTAAAGTACTTGTT+GGG | 0.476641 | 4.3:-84500161 | MS.gene24922:CDS |
GCTGGGAAATCAGTCTTGTC+AGG | 0.477588 | 4.3:-84498706 | MS.gene24922:CDS |
CTTAACAGTCAAGTAATCAA+TGG | 0.481139 | 4.3:+84500227 | None:intergenic |
AATAATGTACTCTTGATCTC+TGG | 0.484204 | 4.3:+84499018 | None:intergenic |
CTTGAGCAGCAGCTTTCAAT+CGG | 0.487009 | 4.3:+84500610 | None:intergenic |
TAGTGGCTTCTCCAATGGGT+TGG | 0.487019 | 4.3:-84498579 | MS.gene24922:CDS |
TAGTGCTGAGATATGCAAAA+TGG | 0.487236 | 4.3:+84500059 | None:intergenic |
CCACAATAGTACATAATATG+AGG | 0.498023 | 4.3:-84498924 | MS.gene24922:CDS |
CTCTTCCTTTAACTGTAACA+AGG | 0.506203 | 4.3:+84500331 | None:intergenic |
GTTACAGTTAAAGGAAGAGA+AGG | 0.514644 | 4.3:-84500327 | MS.gene24922:CDS |
GCAACCGCGATCTATCAATC+AGG | 0.516979 | 4.3:-84498826 | MS.gene24922:CDS |
TTGAAAGCTGCTGCTCAAGC+AGG | 0.522177 | 4.3:-84500606 | MS.gene24922:CDS |
TGTTAAGAATGGACAGTATG+AGG | 0.523009 | 4.3:-84500181 | MS.gene24922:CDS |
TAGCAGAAACATAGCAGAAG+AGG | 0.525955 | 4.3:-84498884 | MS.gene24922:CDS |
TGGCACATTTCTAGTAGCCA+TGG | 0.526871 | 4.3:-84498479 | MS.gene24922:CDS |
ATCATGGAAATGACATGTGT+AGG | 0.527018 | 4.3:+84498517 | None:intergenic |
CATCTTGAACTACAGTATAG+AGG | 0.529126 | 4.3:+84500571 | None:intergenic |
AAATAGAGGGGCTAAAGACC+TGG | 0.533263 | 4.3:-84500121 | MS.gene24922:CDS |
CCCTTAAAGTACTTGTTGGG+TGG | 0.534099 | 4.3:-84500158 | MS.gene24922:CDS |
TCAAAAGAAATACAAATAGA+GGG | 0.536770 | 4.3:-84500134 | MS.gene24922:CDS |
TTACATACTGCTGCATCTAT+GGG | 0.537925 | 4.3:-84500498 | MS.gene24922:CDS |
ATTTGACTTGCAAAATGAAG+AGG | 0.542519 | 4.3:+84500297 | None:intergenic |
CCTCATATTATGTACTATTG+TGG | 0.545318 | 4.3:+84498924 | None:intergenic |
AGCACTAAGGAGTGACCCGC+AGG | 0.545374 | 4.3:-84500043 | MS.gene24922:intron |
CGTTTCGTTAATCGTTGCAA+AGG | 0.551392 | 4.3:-84498382 | MS.gene24922:CDS |
CATTGGAGAAGCCACTAGAA+AGG | 0.552171 | 4.3:+84498585 | None:intergenic |
TTTCAAATTCATAATTTCGG+TGG | 0.553407 | 4.3:+84500461 | None:intergenic |
TTTGCATGGCAAGATGGATG+GGG | 0.554490 | 4.3:+84500400 | None:intergenic |
CAGAAGAGGAACGTAACACT+TGG | 0.556269 | 4.3:-84498870 | MS.gene24922:CDS |
GCATCACTGACTTCTAAGCT+AGG | 0.589972 | 4.3:+84498979 | None:intergenic |
ATAGATGCAGCAGTATGTAA+AGG | 0.591635 | 4.3:+84500501 | None:intergenic |
CTAACCTGATAAATTCCACC+AGG | 0.595881 | 4.3:+84498793 | None:intergenic |
CTAGCGATAAACCAACCCAT+TGG | 0.598302 | 4.3:+84498568 | None:intergenic |
GGCGTTCAAACCATTGTCAT+CGG | 0.608201 | 4.3:+84498765 | None:intergenic |
TAGAACAATAGCCTTTCTAG+TGG | 0.615280 | 4.3:-84498596 | MS.gene24922:CDS |
AATGGTAGAAATGGAGGACG+TGG | 0.615882 | 4.3:+84498744 | None:intergenic |
GTTAGTGCTACCGATGACAA+TGG | 0.623826 | 4.3:-84498775 | MS.gene24922:CDS |
TGCTTAAACACAGAATTGCT+AGG | 0.626393 | 4.3:-84498426 | MS.gene24922:CDS |
GCTTTGAAGCTAAATCAGCA+AGG | 0.643501 | 4.3:-84500429 | MS.gene24922:CDS |
CAAAAGAAATACAAATAGAG+GGG | 0.649379 | 4.3:-84500133 | MS.gene24922:CDS |
CAATCCTGATTGATAGATCG+CGG | 0.654668 | 4.3:+84498822 | None:intergenic |
CATGGAAATGACATGTGTAG+GGG | 0.661427 | 4.3:+84498519 | None:intergenic |
AGTGCTTGCTAGGTCTAATG+CGG | 0.662825 | 4.3:+84499041 | None:intergenic |
AACCTGATAAATTCCACCAG+GGG | 0.693447 | 4.3:+84498795 | None:intergenic |
TAACCTGATAAATTCCACCA+GGG | 0.695982 | 4.3:+84498794 | None:intergenic |
ACCTGATAAATTCCACCAGG+GGG | 0.706697 | 4.3:+84498796 | None:intergenic |
AAAACTGAAGTCAATCACCA+TGG | 0.714383 | 4.3:+84498462 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAAATGTAATAACAAATA+TGG | + | chr4.3:84499741-84499760 | None:intergenic | 15.0% |
!!! | TATATATAGTAGTTTTTCAT+AGG | + | chr4.3:84499420-84499439 | None:intergenic | 15.0% |
!! | AAAAACGATGAATAAAATCA+TGG | + | chr4.3:84500498-84500517 | None:intergenic | 20.0% |
!! | AAATTAACTGAAAAAACCAA+CGG | - | chr4.3:84499448-84499467 | MS.gene24922:intron | 20.0% |
!! | AGACTAATTATAAATAAGGT+AGG | - | chr4.3:84499802-84499821 | MS.gene24922:intron | 20.0% |
!! | AGGTTTCAAATTCATAATTT+CGG | + | chr4.3:84498541-84498560 | None:intergenic | 20.0% |
!! | CGAAAGACTAATTATAAATA+AGG | - | chr4.3:84499798-84499817 | MS.gene24922:intron | 20.0% |
!! | TCAAAAGAAATACAAATAGA+GGG | - | chr4.3:84498862-84498881 | MS.gene24922:CDS | 20.0% |
!! | TCTTTAACTCCAAATTTATA+CGG | + | chr4.3:84499920-84499939 | None:intergenic | 20.0% |
!!! | AAGAGTACATTATTAAGTTT+TGG | - | chr4.3:84499987-84500006 | MS.gene24922:intron | 20.0% |
!!! | AGCTTTAAATACAAAAACAA+AGG | - | chr4.3:84499251-84499270 | MS.gene24922:intron | 20.0% |
!!! | AGTACAAAATTTTAAATAGG+AGG | - | chr4.3:84498898-84498917 | MS.gene24922:CDS | 20.0% |
!!! | ATGATTTTATTCATCGTTTT+TGG | - | chr4.3:84500497-84500516 | MS.gene24922:CDS | 20.0% |
!!! | CTAGTTATTTATTTTCTATG+TGG | - | chr4.3:84500447-84500466 | MS.gene24922:CDS | 20.0% |
!!! | GTACAAAATTTTAAATAGGA+GGG | - | chr4.3:84498899-84498918 | MS.gene24922:CDS | 20.0% |
!!! | TATTTAAAATTTTGTACTCC+AGG | + | chr4.3:84498896-84498915 | None:intergenic | 20.0% |
!!! | TGGAGTACAAAATTTTAAAT+AGG | - | chr4.3:84498895-84498914 | MS.gene24922:CDS | 20.0% |
! | CAAAAGAAATACAAATAGAG+GGG | - | chr4.3:84498863-84498882 | MS.gene24922:CDS | 25.0% |
! | CTCAAAAGAAATACAAATAG+AGG | - | chr4.3:84498861-84498880 | MS.gene24922:CDS | 25.0% |
! | TAATTCGACATAAATCAACA+AGG | - | chr4.3:84499199-84499218 | MS.gene24922:intron | 25.0% |
! | TTTCAAATTCATAATTTCGG+TGG | + | chr4.3:84498538-84498557 | None:intergenic | 25.0% |
!! | AAATTTGGAGTTAAAGAATC+TGG | - | chr4.3:84499923-84499942 | MS.gene24922:intron | 25.0% |
!! | TGTATCGTTCTTTAATTTCT+TGG | - | chr4.3:84499860-84499879 | MS.gene24922:intron | 25.0% |
!!! | AATGTGTTCTTTTTTACGAA+TGG | + | chr4.3:84498989-84499008 | None:intergenic | 25.0% |
!!! | GTTATTTATTTTCTATGTGG+AGG | - | chr4.3:84500450-84500469 | MS.gene24922:CDS | 25.0% |
AATAATGTACTCTTGATCTC+TGG | + | chr4.3:84499981-84500000 | None:intergenic | 30.0% | |
AGTAAAAATGGTAGAAATGG+AGG | + | chr4.3:84500261-84500280 | None:intergenic | 30.0% | |
ATGACTCTCATGTAGTTTAT+CGG | - | chr4.3:84499025-84499044 | MS.gene24922:CDS | 30.0% | |
ATGTGGAAGACATATAGTTT+AGG | + | chr4.3:84499475-84499494 | None:intergenic | 30.0% | |
ATTAACGAAACGAACCTTTA+AGG | + | chr4.3:84500606-84500625 | None:intergenic | 30.0% | |
CCACAATAGTACATAATATG+AGG | - | chr4.3:84500072-84500091 | MS.gene24922:CDS | 30.0% | |
CCTCATATTATGTACTATTG+TGG | + | chr4.3:84500075-84500094 | None:intergenic | 30.0% | |
CTTAACAGTCAAGTAATCAA+TGG | + | chr4.3:84498772-84498791 | None:intergenic | 30.0% | |
TAGGATAGTTAAAGCCTTAA+AGG | - | chr4.3:84500589-84500608 | MS.gene24922:CDS | 30.0% | |
TCACTTTCTCATATTGTGTT+CGG | - | chr4.3:84498743-84498762 | MS.gene24922:CDS | 30.0% | |
TGGAGTAAAAATGGTAGAAA+TGG | + | chr4.3:84500264-84500283 | None:intergenic | 30.0% | |
TGTAAAGGAGTTTCAACAAA+TGG | + | chr4.3:84498483-84498502 | None:intergenic | 30.0% | |
! | AATTTTAAATAGGAGGGATG+AGG | - | chr4.3:84498905-84498924 | MS.gene24922:CDS | 30.0% |
! | ATCAAAAAGGAGTTTTCTTC+GGG | + | chr4.3:84499638-84499657 | None:intergenic | 30.0% |
! | CATCAAAAAGGAGTTTTCTT+CGG | + | chr4.3:84499639-84499658 | None:intergenic | 30.0% |
! | CTGAGAATATGTGCAATTTT+GGG | + | chr4.3:84500044-84500063 | None:intergenic | 30.0% |
! | CTTCATATTGCTGTTAAGAA+TGG | - | chr4.3:84498804-84498823 | MS.gene24922:CDS | 30.0% |
! | CTTCATTTTGCAAGTCAAAT+TGG | - | chr4.3:84498702-84498721 | MS.gene24922:CDS | 30.0% |
! | CTTCTATTGTTGTTAAGTAC+TGG | - | chr4.3:84499894-84499913 | MS.gene24922:intron | 30.0% |
! | CTTTAATTTCTTGGTAGAAC+AGG | - | chr4.3:84499869-84499888 | MS.gene24922:intron | 30.0% |
! | TCAAGATGATCCATACATTT+TGG | - | chr4.3:84498440-84498459 | MS.gene24922:CDS | 30.0% |
! | TTTAGCTTCAAAGCAAATGA+AGG | + | chr4.3:84498561-84498580 | None:intergenic | 30.0% |
!! | ACATGAGAGTCATTTTCTTT+TGG | + | chr4.3:84499018-84499037 | None:intergenic | 30.0% |
!! | ATGTAGTTTATCGGTGTTTT+TGG | - | chr4.3:84499034-84499053 | MS.gene24922:CDS | 30.0% |
!! | ATTTCTACCATTTTTACTCC+AGG | - | chr4.3:84500263-84500282 | MS.gene24922:CDS | 30.0% |
!! | ATTTGACTTGCAAAATGAAG+AGG | + | chr4.3:84498702-84498721 | None:intergenic | 30.0% |
!! | GGAAAAGGTATTCATCAAAA+AGG | + | chr4.3:84499651-84499670 | None:intergenic | 30.0% |
AAAACTGAAGTCAATCACCA+TGG | + | chr4.3:84500537-84500556 | None:intergenic | 35.0% | |
AAACAAACACTTGGAAACAC+AGG | - | chr4.3:84499677-84499696 | MS.gene24922:intron | 35.0% | |
AGAAAGGCTATTGTTCTACT+TGG | + | chr4.3:84500398-84500417 | None:intergenic | 35.0% | |
AGAGGATTTGAATTCCTTCT+AGG | - | chr4.3:84499544-84499563 | MS.gene24922:intron | 35.0% | |
AGCATTTCCTGGAGTAAAAA+TGG | + | chr4.3:84500273-84500292 | None:intergenic | 35.0% | |
ATAGATGCAGCAGTATGTAA+AGG | + | chr4.3:84498498-84498517 | None:intergenic | 35.0% | |
ATCATGGAAATGACATGTGT+AGG | + | chr4.3:84500482-84500501 | None:intergenic | 35.0% | |
CAATCGGTCACTATTATTTG+TGG | + | chr4.3:84498373-84498392 | None:intergenic | 35.0% | |
CATCTTGAACTACAGTATAG+AGG | + | chr4.3:84498428-84498447 | None:intergenic | 35.0% | |
CCAAAATTGCACATATTCTC+AGG | - | chr4.3:84500042-84500061 | MS.gene24922:intron | 35.0% | |
CGCTAAAACTGATACAGAAA+AGG | + | chr4.3:84500354-84500373 | None:intergenic | 35.0% | |
CTCTTCCTTTAACTGTAACA+AGG | + | chr4.3:84498668-84498687 | None:intergenic | 35.0% | |
GAAGACCTTGTTACAGTTAA+AGG | - | chr4.3:84498660-84498679 | MS.gene24922:CDS | 35.0% | |
GAATTCAAATCCTCTCTGAA+GGG | + | chr4.3:84499539-84499558 | None:intergenic | 35.0% | |
GCAAAACAACCAAGAACATA+TGG | - | chr4.3:84498614-84498633 | MS.gene24922:CDS | 35.0% | |
GCTATTGTTCTACTTGGTAA+TGG | + | chr4.3:84500392-84500411 | None:intergenic | 35.0% | |
GTTACAGTTAAAGGAAGAGA+AGG | - | chr4.3:84498669-84498688 | MS.gene24922:CDS | 35.0% | |
TAACCTGATAAATTCCACCA+GGG | + | chr4.3:84500205-84500224 | None:intergenic | 35.0% | |
TAGAACAATAGCCTTTCTAG+TGG | - | chr4.3:84500400-84500419 | MS.gene24922:CDS | 35.0% | |
TCATGGAAATGACATGTGTA+GGG | + | chr4.3:84500481-84500500 | None:intergenic | 35.0% | |
TCTATACGCTCCAAAATGTA+TGG | + | chr4.3:84498453-84498472 | None:intergenic | 35.0% | |
TGCTTAAACACAGAATTGCT+AGG | - | chr4.3:84500570-84500589 | MS.gene24922:CDS | 35.0% | |
TGTTAAGAATGGACAGTATG+AGG | - | chr4.3:84498815-84498834 | MS.gene24922:CDS | 35.0% | |
TTACATACTGCTGCATCTAT+GGG | - | chr4.3:84498498-84498517 | MS.gene24922:CDS | 35.0% | |
TTTACATACTGCTGCATCTA+TGG | - | chr4.3:84498497-84498516 | MS.gene24922:CDS | 35.0% | |
! | ATTTTTACTCCAGGAAATGC+TGG | - | chr4.3:84500272-84500291 | MS.gene24922:CDS | 35.0% |
! | CCTGAGAATATGTGCAATTT+TGG | + | chr4.3:84500045-84500064 | None:intergenic | 35.0% |
! | TAGTGCTGAGATATGCAAAA+TGG | + | chr4.3:84498940-84498959 | None:intergenic | 35.0% |
! | TTTTGCATATCTCAGCACTA+AGG | - | chr4.3:84498940-84498959 | MS.gene24922:CDS | 35.0% |
! | TTTTTACTCCAGGAAATGCT+GGG | - | chr4.3:84500273-84500292 | MS.gene24922:CDS | 35.0% |
!! | AAGTACTGGCCGTATAAATT+TGG | - | chr4.3:84499908-84499927 | MS.gene24922:intron | 35.0% |
!! | ATGTTCTTGGTTGTTTTGCA+TGG | + | chr4.3:84498613-84498632 | None:intergenic | 35.0% |
!! | TGATTGACTTCAGTTTTGCA+AGG | - | chr4.3:84500540-84500559 | MS.gene24922:CDS | 35.0% |
!! | TGTTTGTTTTCGACAGGAAA+AGG | + | chr4.3:84499666-84499685 | None:intergenic | 35.0% |
AACCTGATAAATTCCACCAG+GGG | + | chr4.3:84500204-84500223 | None:intergenic | 40.0% | |
AATGGCATAAGATTACCTGC+GGG | + | chr4.3:84498971-84498990 | None:intergenic | 40.0% | |
AGCGATACACCATATGTTCT+TGG | + | chr4.3:84498626-84498645 | None:intergenic | 40.0% | |
CAATCCTGATTGATAGATCG+CGG | + | chr4.3:84500177-84500196 | None:intergenic | 40.0% | |
CATGGAAATGACATGTGTAG+GGG | + | chr4.3:84500480-84500499 | None:intergenic | 40.0% | |
CCACCCAACAAGTACTTTAA+GGG | + | chr4.3:84498841-84498860 | None:intergenic | 40.0% | |
CGTTTCGTTAATCGTTGCAA+AGG | - | chr4.3:84500614-84500633 | MS.gene24922:CDS | 40.0% | |
CTAACCTGATAAATTCCACC+AGG | + | chr4.3:84500206-84500225 | None:intergenic | 40.0% | |
GAATGGCATAAGATTACCTG+CGG | + | chr4.3:84498972-84498991 | None:intergenic | 40.0% | |
GGAATTCAAATCCTCTCTGA+AGG | + | chr4.3:84499540-84499559 | None:intergenic | 40.0% | |
TAGCAGAAACATAGCAGAAG+AGG | - | chr4.3:84500112-84500131 | MS.gene24922:CDS | 40.0% | |
TCCTGTCGAAAACAAACACT+TGG | - | chr4.3:84499668-84499687 | MS.gene24922:intron | 40.0% | |
TGGAAAGCAAGTCAAGTATG+TGG | + | chr4.3:84499492-84499511 | None:intergenic | 40.0% | |
! | AACTCTTTTCTCTCTTCGCT+TGG | - | chr4.3:84499346-84499365 | MS.gene24922:intron | 40.0% |
! | AGGCCCTTAAAGTACTTGTT+GGG | - | chr4.3:84498835-84498854 | MS.gene24922:CDS | 40.0% |
! | AGTCTTTGAGTTCACCTAGA+AGG | + | chr4.3:84499561-84499580 | None:intergenic | 40.0% |
! | GACATATAGTTTAGGACCGT+TGG | + | chr4.3:84499467-84499486 | None:intergenic | 40.0% |
! | TTTCTAGTGGCTTCTCCAAT+GGG | - | chr4.3:84500413-84500432 | MS.gene24922:CDS | 40.0% |
! | TTTTGCATGGCAAGATGGAT+GGG | + | chr4.3:84498600-84498619 | None:intergenic | 40.0% |
!! | GCTTTGAAGCTAAATCAGCA+AGG | - | chr4.3:84498567-84498586 | MS.gene24922:CDS | 40.0% |
!! | TCCAAGTGTTTGTTTTCGAC+AGG | + | chr4.3:84499672-84499691 | None:intergenic | 40.0% |
AAATAGAGGGGCTAAAGACC+TGG | - | chr4.3:84498875-84498894 | MS.gene24922:CDS | 45.0% | |
AATGGTAGAAATGGAGGACG+TGG | + | chr4.3:84500255-84500274 | None:intergenic | 45.0% | |
ACCTGATAAATTCCACCAGG+GGG | + | chr4.3:84500203-84500222 | None:intergenic | 45.0% | |
ATGATCTTGTCCCTTCAGAG+AGG | - | chr4.3:84499526-84499545 | MS.gene24922:intron | 45.0% | |
CAGAAGAGGAACGTAACACT+TGG | - | chr4.3:84500126-84500145 | MS.gene24922:CDS | 45.0% | |
CATTGGAGAAGCCACTAGAA+AGG | + | chr4.3:84500414-84500433 | None:intergenic | 45.0% | |
CTAGCGATAAACCAACCCAT+TGG | + | chr4.3:84500431-84500450 | None:intergenic | 45.0% | |
CTTGAGCAGCAGCTTTCAAT+CGG | + | chr4.3:84498389-84498408 | None:intergenic | 45.0% | |
GCCACCCAACAAGTACTTTA+AGG | + | chr4.3:84498842-84498861 | None:intergenic | 45.0% | |
GGCGTTCAAACCATTGTCAT+CGG | + | chr4.3:84500234-84500253 | None:intergenic | 45.0% | |
GTTAGTGCTACCGATGACAA+TGG | - | chr4.3:84500221-84500240 | MS.gene24922:CDS | 45.0% | |
TTTGCATGGCAAGATGGATG+GGG | + | chr4.3:84498599-84498618 | None:intergenic | 45.0% | |
! | AAGGAGTTTTCTTCGGGTGT+AGG | + | chr4.3:84499632-84499651 | None:intergenic | 45.0% |
! | ACTGATTTCCCAGCATTTCC+TGG | + | chr4.3:84500284-84500303 | None:intergenic | 45.0% |
! | AGTGCTTGCTAGGTCTAATG+CGG | + | chr4.3:84499958-84499977 | None:intergenic | 45.0% |
! | CCCTTAAAGTACTTGTTGGG+TGG | - | chr4.3:84498838-84498857 | MS.gene24922:CDS | 45.0% |
! | CTCTGAAGGGACAAGATCAT+AGG | + | chr4.3:84499526-84499545 | None:intergenic | 45.0% |
! | CTTTCTAGTGGCTTCTCCAA+TGG | - | chr4.3:84500412-84500431 | MS.gene24922:CDS | 45.0% |
! | GAGGCCCTTAAAGTACTTGT+TGG | - | chr4.3:84498834-84498853 | MS.gene24922:CDS | 45.0% |
! | GTTTTGCATGGCAAGATGGA+TGG | + | chr4.3:84498601-84498620 | None:intergenic | 45.0% |
!! | GCATCACTGACTTCTAAGCT+AGG | + | chr4.3:84500020-84500039 | None:intergenic | 45.0% |
!! | GGTTGTTTTGCATGGCAAGA+TGG | + | chr4.3:84498605-84498624 | None:intergenic | 45.0% |
!! | TGGCACATTTCTAGTAGCCA+TGG | - | chr4.3:84500517-84500536 | MS.gene24922:CDS | 45.0% |
GATCATAGGTCCAAGACACG+TGG | + | chr4.3:84499512-84499531 | None:intergenic | 50.0% | |
GCAACCGCGATCTATCAATC+AGG | - | chr4.3:84500170-84500189 | MS.gene24922:CDS | 50.0% | |
TAGTGGCTTCTCCAATGGGT+TGG | - | chr4.3:84500417-84500436 | MS.gene24922:CDS | 50.0% | |
TCCCCCTGGTGGAATTTATC+AGG | - | chr4.3:84500199-84500218 | MS.gene24922:CDS | 50.0% | |
TTGAAAGCTGCTGCTCAAGC+AGG | - | chr4.3:84498390-84498409 | MS.gene24922:CDS | 50.0% | |
! | GACTTGCTTTCCACGTGTCT+TGG | - | chr4.3:84499499-84499518 | MS.gene24922:intron | 50.0% |
! | GCTGGGAAATCAGTCTTGTC+AGG | - | chr4.3:84500290-84500309 | MS.gene24922:CDS | 50.0% |
!! | TGATCTCTGGAGTGCTTGCT+AGG | + | chr4.3:84499968-84499987 | None:intergenic | 50.0% |
CAATCAGGATTGAGTCCCCC+TGG | - | chr4.3:84500185-84500204 | MS.gene24922:CDS | 55.0% | |
AGCACTAAGGAGTGACCCGC+AGG | - | chr4.3:84498953-84498972 | MS.gene24922:CDS | 60.0% | |
TCAGGATTGAGTCCCCCTGG+TGG | - | chr4.3:84500188-84500207 | MS.gene24922:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 84498363 | 84500655 | 84498363 | ID=MS.gene24922 |
chr4.3 | mRNA | 84498363 | 84500655 | 84498363 | ID=MS.gene24922.t1;Parent=MS.gene24922 |
chr4.3 | exon | 84500044 | 84500655 | 84500044 | ID=MS.gene24922.t1.exon1;Parent=MS.gene24922.t1 |
chr4.3 | CDS | 84500044 | 84500655 | 84500044 | ID=cds.MS.gene24922.t1;Parent=MS.gene24922.t1 |
chr4.3 | exon | 84498363 | 84499127 | 84498363 | ID=MS.gene24922.t1.exon2;Parent=MS.gene24922.t1 |
chr4.3 | CDS | 84498363 | 84499127 | 84498363 | ID=cds.MS.gene24922.t1;Parent=MS.gene24922.t1 |
Gene Sequence |
Protein sequence |