AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24922


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24922.t1 MTR_8g072510 72.160 449 115 5 1 443 1 445 0.0 638
MS.gene24922.t1 MTR_8g062410 72.028 429 111 2 1 429 1 420 0.0 606
MS.gene24922.t1 MTR_7g021090 66.667 393 123 3 4 395 3 388 0.0 523
MS.gene24922.t1 MTR_3g016210 60.811 444 155 6 1 427 1 442 0.0 517
MS.gene24922.t1 MTR_8g039620 62.937 429 149 6 2 427 6 427 1.48e-180 512
MS.gene24922.t1 MTR_1g059930 65.909 352 119 1 8 359 10 360 6.07e-162 464
MS.gene24922.t1 MTR_8g068990 63.315 368 114 6 8 371 10 360 2.97e-156 451
MS.gene24922.t1 MTR_8g069880 54.709 446 182 7 6 435 3 444 4.49e-152 440
MS.gene24922.t1 MTR_8g066670 55.708 438 189 4 1 438 1067 1499 1.50e-150 465
MS.gene24922.t1 MTR_8g073260 52.318 453 197 8 1 450 1 437 1.57e-146 426
MS.gene24922.t1 MTR_7g451420 66.987 312 102 1 3 314 2 312 2.71e-144 415
MS.gene24922.t1 MTR_8g040930 60.665 361 131 7 52 407 1 355 2.19e-142 412
MS.gene24922.t1 MTR_8g041240 60.665 361 131 7 52 407 1 355 2.19e-142 412
MS.gene24922.t1 MTR_8g467780 54.591 403 171 4 9 401 10 410 1.10e-138 406
MS.gene24922.t1 MTR_3g105650 43.309 411 194 6 7 408 2 382 3.23e-106 322
MS.gene24922.t1 MTR_8g073275 40.725 469 195 11 52 453 1 453 9.24e-92 286
MS.gene24922.t1 MTR_1g069110 28.606 416 251 11 10 408 18 404 2.21e-35 137
MS.gene24922.t1 MTR_7g099580 24.916 297 173 7 22 314 24 274 1.14e-22 99.0
MS.gene24922.t1 MTR_7g099570 28.986 207 133 3 10 211 9 206 3.51e-21 97.1
MS.gene24922.t1 MTR_2g101320 26.577 222 146 3 38 252 134 345 9.42e-18 86.3
MS.gene24922.t1 MTR_7g117620 28.205 312 191 11 45 348 119 405 1.00e-16 82.8
MS.gene24922.t1 MTR_2g101310 27.368 190 128 2 41 230 137 316 4.80e-16 81.3
MS.gene24922.t1 MTR_1g032100 25.517 290 178 5 46 310 95 371 9.15e-16 80.1
MS.gene24922.t1 MTR_2g101310 27.368 190 128 2 41 230 137 316 1.41e-15 79.3
MS.gene24922.t1 MTR_8g105260 25.532 235 156 2 45 272 101 323 2.21e-14 75.5
MS.gene24922.t1 MTR_5g085500 26.829 164 109 3 72 232 1 156 1.36e-12 69.7
MS.gene24922.t1 MTR_4g062100 25.773 291 149 10 43 267 32 321 3.52e-12 68.9
MS.gene24922.t1 MTR_1g115575 23.148 432 262 12 43 422 132 545 1.31e-11 67.0
MS.gene24922.t1 MTR_7g100390 24.740 384 238 13 5 363 46 403 2.50e-11 66.2
MS.gene24922.t1 MTR_2g096190 25.000 184 127 2 5 188 100 272 3.85e-11 65.5
MS.gene24922.t1 MTR_5g085830 22.595 447 253 14 12 412 281 680 4.08e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24922.t1 AT4G10720 36.543 405 232 5 9 404 4 392 1.12e-83 265
MS.gene24922.t1 AT1G14480 34.423 459 261 9 9 448 4 441 3.47e-81 258
MS.gene24922.t1 AT4G10720 39.688 320 186 1 9 321 4 323 2.09e-79 253
MS.gene24922.t1 AT5G15500 39.785 372 203 7 10 374 6 363 1.05e-77 249
MS.gene24922.t1 AT1G14500 32.135 445 263 6 9 439 4 423 3.81e-76 245
MS.gene24922.t1 AT5G54620 35.381 407 244 6 9 398 4 408 2.25e-73 237
MS.gene24922.t1 AT5G54610 31.250 416 242 10 9 413 4 386 6.85e-63 210
MS.gene24922.t1 AT1G14480 32.589 448 241 12 9 448 4 398 4.39e-60 202
MS.gene24922.t1 AT5G15500 35.055 271 155 7 111 374 1 257 1.58e-35 135
MS.gene24922.t1 AT5G51160 28.841 371 218 10 64 404 35 389 3.53e-33 130
MS.gene24922.t1 AT4G03500 30.876 217 129 5 99 311 280 479 4.31e-20 93.6
MS.gene24922.t1 AT4G03500 30.876 217 129 5 99 311 280 479 4.31e-20 93.6
MS.gene24922.t1 AT4G03500 30.876 217 129 5 99 311 303 502 5.16e-20 93.6
MS.gene24922.t1 AT4G03490 23.884 448 259 13 10 428 201 595 5.91e-18 87.0
MS.gene24922.t1 AT4G03490 23.884 448 259 13 10 428 211 605 6.06e-18 87.0
MS.gene24922.t1 AT5G54710 26.389 432 240 21 66 456 187 581 9.94e-18 86.3
MS.gene24922.t1 AT5G54710 26.389 432 240 21 66 456 232 626 1.43e-17 85.9
MS.gene24922.t1 AT4G03460 30.093 216 127 5 101 311 258 454 1.58e-17 85.5
MS.gene24922.t1 AT4G03460 30.093 216 127 5 101 311 290 486 1.59e-17 85.9
MS.gene24922.t1 AT1G34050 28.517 263 161 6 66 314 174 423 5.11e-17 84.0
MS.gene24922.t1 AT2G01680 23.729 354 212 7 45 372 97 418 5.84e-17 83.6
MS.gene24922.t1 AT4G03490 27.097 310 165 10 10 311 211 467 4.64e-16 81.3
MS.gene24922.t1 AT5G54700 26.774 310 182 11 109 409 30 303 8.09e-14 72.8
MS.gene24922.t1 AT1G03670 25.140 358 201 13 102 434 279 594 1.72e-13 73.2
MS.gene24922.t1 AT1G05640 27.431 288 174 10 45 310 191 465 4.86e-13 71.6
MS.gene24922.t1 AT1G05640 27.811 169 116 2 10 178 226 388 3.37e-11 65.9
MS.gene24922.t1 AT2G24600 26.316 266 157 7 80 314 175 432 7.27e-13 70.9
MS.gene24922.t1 AT2G24600 26.316 266 157 7 80 314 175 432 7.27e-13 70.9
MS.gene24922.t1 AT2G24600 25.606 289 176 8 80 337 175 455 7.72e-13 70.9
MS.gene24922.t1 AT2G24600 25.606 289 176 8 80 337 175 455 7.72e-13 70.9
MS.gene24922.t1 AT1G10340 27.848 237 130 6 110 314 201 428 9.44e-13 70.9
MS.gene24922.t1 AT1G10340 27.848 237 130 6 110 314 205 432 1.08e-12 70.5
MS.gene24922.t1 AT5G60070 27.329 161 114 2 5 164 107 265 1.45e-12 70.1
MS.gene24922.t1 AT4G03470 22.249 409 262 12 61 454 289 656 1.83e-12 70.1
MS.gene24922.t1 AT3G12360 23.516 438 237 16 5 372 73 482 2.13e-12 69.7
MS.gene24922.t1 AT3G12360 23.516 438 237 16 5 372 61 470 2.96e-12 69.3
MS.gene24922.t1 AT1G07710 26.667 210 138 6 5 213 100 294 8.08e-11 64.7
MS.gene24922.t1 AT1G07710 26.667 210 138 6 5 213 100 294 8.08e-11 64.7
MS.gene24922.t1 AT2G31820 26.627 169 118 2 10 178 262 424 8.52e-11 64.7

Find 81 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAACGAAACGAACCTTTA+AGG 0.098382 4.3:+84498393 None:intergenic
CCTGAGAATATGTGCAATTT+TGG 0.152768 4.3:+84498954 None:intergenic
GAAGACCTTGTTACAGTTAA+AGG 0.166635 4.3:-84500336 MS.gene24922:CDS
TCAAGATGATCCATACATTT+TGG 0.169848 4.3:-84500556 MS.gene24922:CDS
TAGGATAGTTAAAGCCTTAA+AGG 0.173245 4.3:-84498407 MS.gene24922:CDS
GCCACCCAACAAGTACTTTA+AGG 0.181314 4.3:+84500157 None:intergenic
TTTACATACTGCTGCATCTA+TGG 0.232324 4.3:-84500499 MS.gene24922:CDS
AAGAGTACATTATTAAGTTT+TGG 0.272299 4.3:-84499009 MS.gene24922:CDS
AAGTACTGGCCGTATAAATT+TGG 0.292145 4.3:-84499088 MS.gene24922:CDS
TCTTTAACTCCAAATTTATA+CGG 0.310097 4.3:+84499079 None:intergenic
AGCGATACACCATATGTTCT+TGG 0.321709 4.3:+84500373 None:intergenic
ACTGATTTCCCAGCATTTCC+TGG 0.328259 4.3:+84498715 None:intergenic
AGGTTTCAAATTCATAATTT+CGG 0.346731 4.3:+84500458 None:intergenic
AAATTTGGAGTTAAAGAATC+TGG 0.348394 4.3:-84499073 MS.gene24922:CDS
CTTTCTAGTGGCTTCTCCAA+TGG 0.372396 4.3:-84498584 MS.gene24922:CDS
CTCAAAAGAAATACAAATAG+AGG 0.383728 4.3:-84500135 MS.gene24922:CDS
TCTACTGACGGTTACATCAT+TGG 0.385397 4.3:+84498352 None:intergenic
CAATCGGTCACTATTATTTG+TGG 0.388470 4.3:+84500626 None:intergenic
TTTCTAGTGGCTTCTCCAAT+GGG 0.397944 4.3:-84498583 MS.gene24922:CDS
TCACTTTCTCATATTGTGTT+CGG 0.413393 4.3:-84500253 MS.gene24922:CDS
CTTCTATTGTTGTTAAGTAC+TGG 0.414455 4.3:-84499102 MS.gene24922:CDS
CTTCATATTGCTGTTAAGAA+TGG 0.415776 4.3:-84500192 MS.gene24922:CDS
CCACCCAACAAGTACTTTAA+GGG 0.430505 4.3:+84500158 None:intergenic
TCTATACGCTCCAAAATGTA+TGG 0.437756 4.3:+84500546 None:intergenic
GCTATTGTTCTACTTGGTAA+TGG 0.440534 4.3:+84498607 None:intergenic
TGATCTCTGGAGTGCTTGCT+AGG 0.445586 4.3:+84499031 None:intergenic
TGTAAAGGAGTTTCAACAAA+TGG 0.448723 4.3:+84500516 None:intergenic
AGAAAGGCTATTGTTCTACT+TGG 0.451000 4.3:+84498601 None:intergenic
TCATGGAAATGACATGTGTA+GGG 0.452409 4.3:+84498518 None:intergenic
GAGGCCCTTAAAGTACTTGT+TGG 0.455376 4.3:-84500162 MS.gene24922:CDS
GCAAAACAACCAAGAACATA+TGG 0.456371 4.3:-84500382 MS.gene24922:CDS
TTTAGCTTCAAAGCAAATGA+AGG 0.467344 4.3:+84500438 None:intergenic
CCAAAATTGCACATATTCTC+AGG 0.473301 4.3:-84498954 MS.gene24922:CDS
CGCTAAAACTGATACAGAAA+AGG 0.475632 4.3:+84498645 None:intergenic
AGGCCCTTAAAGTACTTGTT+GGG 0.476641 4.3:-84500161 MS.gene24922:CDS
GCTGGGAAATCAGTCTTGTC+AGG 0.477588 4.3:-84498706 MS.gene24922:CDS
CTTAACAGTCAAGTAATCAA+TGG 0.481139 4.3:+84500227 None:intergenic
AATAATGTACTCTTGATCTC+TGG 0.484204 4.3:+84499018 None:intergenic
CTTGAGCAGCAGCTTTCAAT+CGG 0.487009 4.3:+84500610 None:intergenic
TAGTGGCTTCTCCAATGGGT+TGG 0.487019 4.3:-84498579 MS.gene24922:CDS
TAGTGCTGAGATATGCAAAA+TGG 0.487236 4.3:+84500059 None:intergenic
CCACAATAGTACATAATATG+AGG 0.498023 4.3:-84498924 MS.gene24922:CDS
CTCTTCCTTTAACTGTAACA+AGG 0.506203 4.3:+84500331 None:intergenic
GTTACAGTTAAAGGAAGAGA+AGG 0.514644 4.3:-84500327 MS.gene24922:CDS
GCAACCGCGATCTATCAATC+AGG 0.516979 4.3:-84498826 MS.gene24922:CDS
TTGAAAGCTGCTGCTCAAGC+AGG 0.522177 4.3:-84500606 MS.gene24922:CDS
TGTTAAGAATGGACAGTATG+AGG 0.523009 4.3:-84500181 MS.gene24922:CDS
TAGCAGAAACATAGCAGAAG+AGG 0.525955 4.3:-84498884 MS.gene24922:CDS
TGGCACATTTCTAGTAGCCA+TGG 0.526871 4.3:-84498479 MS.gene24922:CDS
ATCATGGAAATGACATGTGT+AGG 0.527018 4.3:+84498517 None:intergenic
CATCTTGAACTACAGTATAG+AGG 0.529126 4.3:+84500571 None:intergenic
AAATAGAGGGGCTAAAGACC+TGG 0.533263 4.3:-84500121 MS.gene24922:CDS
CCCTTAAAGTACTTGTTGGG+TGG 0.534099 4.3:-84500158 MS.gene24922:CDS
TCAAAAGAAATACAAATAGA+GGG 0.536770 4.3:-84500134 MS.gene24922:CDS
TTACATACTGCTGCATCTAT+GGG 0.537925 4.3:-84500498 MS.gene24922:CDS
ATTTGACTTGCAAAATGAAG+AGG 0.542519 4.3:+84500297 None:intergenic
CCTCATATTATGTACTATTG+TGG 0.545318 4.3:+84498924 None:intergenic
AGCACTAAGGAGTGACCCGC+AGG 0.545374 4.3:-84500043 MS.gene24922:intron
CGTTTCGTTAATCGTTGCAA+AGG 0.551392 4.3:-84498382 MS.gene24922:CDS
CATTGGAGAAGCCACTAGAA+AGG 0.552171 4.3:+84498585 None:intergenic
TTTCAAATTCATAATTTCGG+TGG 0.553407 4.3:+84500461 None:intergenic
TTTGCATGGCAAGATGGATG+GGG 0.554490 4.3:+84500400 None:intergenic
CAGAAGAGGAACGTAACACT+TGG 0.556269 4.3:-84498870 MS.gene24922:CDS
GCATCACTGACTTCTAAGCT+AGG 0.589972 4.3:+84498979 None:intergenic
ATAGATGCAGCAGTATGTAA+AGG 0.591635 4.3:+84500501 None:intergenic
CTAACCTGATAAATTCCACC+AGG 0.595881 4.3:+84498793 None:intergenic
CTAGCGATAAACCAACCCAT+TGG 0.598302 4.3:+84498568 None:intergenic
GGCGTTCAAACCATTGTCAT+CGG 0.608201 4.3:+84498765 None:intergenic
TAGAACAATAGCCTTTCTAG+TGG 0.615280 4.3:-84498596 MS.gene24922:CDS
AATGGTAGAAATGGAGGACG+TGG 0.615882 4.3:+84498744 None:intergenic
GTTAGTGCTACCGATGACAA+TGG 0.623826 4.3:-84498775 MS.gene24922:CDS
TGCTTAAACACAGAATTGCT+AGG 0.626393 4.3:-84498426 MS.gene24922:CDS
GCTTTGAAGCTAAATCAGCA+AGG 0.643501 4.3:-84500429 MS.gene24922:CDS
CAAAAGAAATACAAATAGAG+GGG 0.649379 4.3:-84500133 MS.gene24922:CDS
CAATCCTGATTGATAGATCG+CGG 0.654668 4.3:+84498822 None:intergenic
CATGGAAATGACATGTGTAG+GGG 0.661427 4.3:+84498519 None:intergenic
AGTGCTTGCTAGGTCTAATG+CGG 0.662825 4.3:+84499041 None:intergenic
AACCTGATAAATTCCACCAG+GGG 0.693447 4.3:+84498795 None:intergenic
TAACCTGATAAATTCCACCA+GGG 0.695982 4.3:+84498794 None:intergenic
ACCTGATAAATTCCACCAGG+GGG 0.706697 4.3:+84498796 None:intergenic
AAAACTGAAGTCAATCACCA+TGG 0.714383 4.3:+84498462 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATGTAATAACAAATA+TGG + chr4.3:84499741-84499760 None:intergenic 15.0%
!!! TATATATAGTAGTTTTTCAT+AGG + chr4.3:84499420-84499439 None:intergenic 15.0%
!! AAAAACGATGAATAAAATCA+TGG + chr4.3:84500498-84500517 None:intergenic 20.0%
!! AAATTAACTGAAAAAACCAA+CGG - chr4.3:84499448-84499467 MS.gene24922:intron 20.0%
!! AGACTAATTATAAATAAGGT+AGG - chr4.3:84499802-84499821 MS.gene24922:intron 20.0%
!! AGGTTTCAAATTCATAATTT+CGG + chr4.3:84498541-84498560 None:intergenic 20.0%
!! CGAAAGACTAATTATAAATA+AGG - chr4.3:84499798-84499817 MS.gene24922:intron 20.0%
!! TCAAAAGAAATACAAATAGA+GGG - chr4.3:84498862-84498881 MS.gene24922:CDS 20.0%
!! TCTTTAACTCCAAATTTATA+CGG + chr4.3:84499920-84499939 None:intergenic 20.0%
!!! AAGAGTACATTATTAAGTTT+TGG - chr4.3:84499987-84500006 MS.gene24922:intron 20.0%
!!! AGCTTTAAATACAAAAACAA+AGG - chr4.3:84499251-84499270 MS.gene24922:intron 20.0%
!!! AGTACAAAATTTTAAATAGG+AGG - chr4.3:84498898-84498917 MS.gene24922:CDS 20.0%
!!! ATGATTTTATTCATCGTTTT+TGG - chr4.3:84500497-84500516 MS.gene24922:CDS 20.0%
!!! CTAGTTATTTATTTTCTATG+TGG - chr4.3:84500447-84500466 MS.gene24922:CDS 20.0%
!!! GTACAAAATTTTAAATAGGA+GGG - chr4.3:84498899-84498918 MS.gene24922:CDS 20.0%
!!! TATTTAAAATTTTGTACTCC+AGG + chr4.3:84498896-84498915 None:intergenic 20.0%
!!! TGGAGTACAAAATTTTAAAT+AGG - chr4.3:84498895-84498914 MS.gene24922:CDS 20.0%
! CAAAAGAAATACAAATAGAG+GGG - chr4.3:84498863-84498882 MS.gene24922:CDS 25.0%
! CTCAAAAGAAATACAAATAG+AGG - chr4.3:84498861-84498880 MS.gene24922:CDS 25.0%
! TAATTCGACATAAATCAACA+AGG - chr4.3:84499199-84499218 MS.gene24922:intron 25.0%
! TTTCAAATTCATAATTTCGG+TGG + chr4.3:84498538-84498557 None:intergenic 25.0%
!! AAATTTGGAGTTAAAGAATC+TGG - chr4.3:84499923-84499942 MS.gene24922:intron 25.0%
!! TGTATCGTTCTTTAATTTCT+TGG - chr4.3:84499860-84499879 MS.gene24922:intron 25.0%
!!! AATGTGTTCTTTTTTACGAA+TGG + chr4.3:84498989-84499008 None:intergenic 25.0%
!!! GTTATTTATTTTCTATGTGG+AGG - chr4.3:84500450-84500469 MS.gene24922:CDS 25.0%
AATAATGTACTCTTGATCTC+TGG + chr4.3:84499981-84500000 None:intergenic 30.0%
AGTAAAAATGGTAGAAATGG+AGG + chr4.3:84500261-84500280 None:intergenic 30.0%
ATGACTCTCATGTAGTTTAT+CGG - chr4.3:84499025-84499044 MS.gene24922:CDS 30.0%
ATGTGGAAGACATATAGTTT+AGG + chr4.3:84499475-84499494 None:intergenic 30.0%
ATTAACGAAACGAACCTTTA+AGG + chr4.3:84500606-84500625 None:intergenic 30.0%
CCACAATAGTACATAATATG+AGG - chr4.3:84500072-84500091 MS.gene24922:CDS 30.0%
CCTCATATTATGTACTATTG+TGG + chr4.3:84500075-84500094 None:intergenic 30.0%
CTTAACAGTCAAGTAATCAA+TGG + chr4.3:84498772-84498791 None:intergenic 30.0%
TAGGATAGTTAAAGCCTTAA+AGG - chr4.3:84500589-84500608 MS.gene24922:CDS 30.0%
TCACTTTCTCATATTGTGTT+CGG - chr4.3:84498743-84498762 MS.gene24922:CDS 30.0%
TGGAGTAAAAATGGTAGAAA+TGG + chr4.3:84500264-84500283 None:intergenic 30.0%
TGTAAAGGAGTTTCAACAAA+TGG + chr4.3:84498483-84498502 None:intergenic 30.0%
! AATTTTAAATAGGAGGGATG+AGG - chr4.3:84498905-84498924 MS.gene24922:CDS 30.0%
! ATCAAAAAGGAGTTTTCTTC+GGG + chr4.3:84499638-84499657 None:intergenic 30.0%
! CATCAAAAAGGAGTTTTCTT+CGG + chr4.3:84499639-84499658 None:intergenic 30.0%
! CTGAGAATATGTGCAATTTT+GGG + chr4.3:84500044-84500063 None:intergenic 30.0%
! CTTCATATTGCTGTTAAGAA+TGG - chr4.3:84498804-84498823 MS.gene24922:CDS 30.0%
! CTTCATTTTGCAAGTCAAAT+TGG - chr4.3:84498702-84498721 MS.gene24922:CDS 30.0%
! CTTCTATTGTTGTTAAGTAC+TGG - chr4.3:84499894-84499913 MS.gene24922:intron 30.0%
! CTTTAATTTCTTGGTAGAAC+AGG - chr4.3:84499869-84499888 MS.gene24922:intron 30.0%
! TCAAGATGATCCATACATTT+TGG - chr4.3:84498440-84498459 MS.gene24922:CDS 30.0%
! TTTAGCTTCAAAGCAAATGA+AGG + chr4.3:84498561-84498580 None:intergenic 30.0%
!! ACATGAGAGTCATTTTCTTT+TGG + chr4.3:84499018-84499037 None:intergenic 30.0%
!! ATGTAGTTTATCGGTGTTTT+TGG - chr4.3:84499034-84499053 MS.gene24922:CDS 30.0%
!! ATTTCTACCATTTTTACTCC+AGG - chr4.3:84500263-84500282 MS.gene24922:CDS 30.0%
!! ATTTGACTTGCAAAATGAAG+AGG + chr4.3:84498702-84498721 None:intergenic 30.0%
!! GGAAAAGGTATTCATCAAAA+AGG + chr4.3:84499651-84499670 None:intergenic 30.0%
AAAACTGAAGTCAATCACCA+TGG + chr4.3:84500537-84500556 None:intergenic 35.0%
AAACAAACACTTGGAAACAC+AGG - chr4.3:84499677-84499696 MS.gene24922:intron 35.0%
AGAAAGGCTATTGTTCTACT+TGG + chr4.3:84500398-84500417 None:intergenic 35.0%
AGAGGATTTGAATTCCTTCT+AGG - chr4.3:84499544-84499563 MS.gene24922:intron 35.0%
AGCATTTCCTGGAGTAAAAA+TGG + chr4.3:84500273-84500292 None:intergenic 35.0%
ATAGATGCAGCAGTATGTAA+AGG + chr4.3:84498498-84498517 None:intergenic 35.0%
ATCATGGAAATGACATGTGT+AGG + chr4.3:84500482-84500501 None:intergenic 35.0%
CAATCGGTCACTATTATTTG+TGG + chr4.3:84498373-84498392 None:intergenic 35.0%
CATCTTGAACTACAGTATAG+AGG + chr4.3:84498428-84498447 None:intergenic 35.0%
CCAAAATTGCACATATTCTC+AGG - chr4.3:84500042-84500061 MS.gene24922:intron 35.0%
CGCTAAAACTGATACAGAAA+AGG + chr4.3:84500354-84500373 None:intergenic 35.0%
CTCTTCCTTTAACTGTAACA+AGG + chr4.3:84498668-84498687 None:intergenic 35.0%
GAAGACCTTGTTACAGTTAA+AGG - chr4.3:84498660-84498679 MS.gene24922:CDS 35.0%
GAATTCAAATCCTCTCTGAA+GGG + chr4.3:84499539-84499558 None:intergenic 35.0%
GCAAAACAACCAAGAACATA+TGG - chr4.3:84498614-84498633 MS.gene24922:CDS 35.0%
GCTATTGTTCTACTTGGTAA+TGG + chr4.3:84500392-84500411 None:intergenic 35.0%
GTTACAGTTAAAGGAAGAGA+AGG - chr4.3:84498669-84498688 MS.gene24922:CDS 35.0%
TAACCTGATAAATTCCACCA+GGG + chr4.3:84500205-84500224 None:intergenic 35.0%
TAGAACAATAGCCTTTCTAG+TGG - chr4.3:84500400-84500419 MS.gene24922:CDS 35.0%
TCATGGAAATGACATGTGTA+GGG + chr4.3:84500481-84500500 None:intergenic 35.0%
TCTATACGCTCCAAAATGTA+TGG + chr4.3:84498453-84498472 None:intergenic 35.0%
TGCTTAAACACAGAATTGCT+AGG - chr4.3:84500570-84500589 MS.gene24922:CDS 35.0%
TGTTAAGAATGGACAGTATG+AGG - chr4.3:84498815-84498834 MS.gene24922:CDS 35.0%
TTACATACTGCTGCATCTAT+GGG - chr4.3:84498498-84498517 MS.gene24922:CDS 35.0%
TTTACATACTGCTGCATCTA+TGG - chr4.3:84498497-84498516 MS.gene24922:CDS 35.0%
! ATTTTTACTCCAGGAAATGC+TGG - chr4.3:84500272-84500291 MS.gene24922:CDS 35.0%
! CCTGAGAATATGTGCAATTT+TGG + chr4.3:84500045-84500064 None:intergenic 35.0%
! TAGTGCTGAGATATGCAAAA+TGG + chr4.3:84498940-84498959 None:intergenic 35.0%
! TTTTGCATATCTCAGCACTA+AGG - chr4.3:84498940-84498959 MS.gene24922:CDS 35.0%
! TTTTTACTCCAGGAAATGCT+GGG - chr4.3:84500273-84500292 MS.gene24922:CDS 35.0%
!! AAGTACTGGCCGTATAAATT+TGG - chr4.3:84499908-84499927 MS.gene24922:intron 35.0%
!! ATGTTCTTGGTTGTTTTGCA+TGG + chr4.3:84498613-84498632 None:intergenic 35.0%
!! TGATTGACTTCAGTTTTGCA+AGG - chr4.3:84500540-84500559 MS.gene24922:CDS 35.0%
!! TGTTTGTTTTCGACAGGAAA+AGG + chr4.3:84499666-84499685 None:intergenic 35.0%
AACCTGATAAATTCCACCAG+GGG + chr4.3:84500204-84500223 None:intergenic 40.0%
AATGGCATAAGATTACCTGC+GGG + chr4.3:84498971-84498990 None:intergenic 40.0%
AGCGATACACCATATGTTCT+TGG + chr4.3:84498626-84498645 None:intergenic 40.0%
CAATCCTGATTGATAGATCG+CGG + chr4.3:84500177-84500196 None:intergenic 40.0%
CATGGAAATGACATGTGTAG+GGG + chr4.3:84500480-84500499 None:intergenic 40.0%
CCACCCAACAAGTACTTTAA+GGG + chr4.3:84498841-84498860 None:intergenic 40.0%
CGTTTCGTTAATCGTTGCAA+AGG - chr4.3:84500614-84500633 MS.gene24922:CDS 40.0%
CTAACCTGATAAATTCCACC+AGG + chr4.3:84500206-84500225 None:intergenic 40.0%
GAATGGCATAAGATTACCTG+CGG + chr4.3:84498972-84498991 None:intergenic 40.0%
GGAATTCAAATCCTCTCTGA+AGG + chr4.3:84499540-84499559 None:intergenic 40.0%
TAGCAGAAACATAGCAGAAG+AGG - chr4.3:84500112-84500131 MS.gene24922:CDS 40.0%
TCCTGTCGAAAACAAACACT+TGG - chr4.3:84499668-84499687 MS.gene24922:intron 40.0%
TGGAAAGCAAGTCAAGTATG+TGG + chr4.3:84499492-84499511 None:intergenic 40.0%
! AACTCTTTTCTCTCTTCGCT+TGG - chr4.3:84499346-84499365 MS.gene24922:intron 40.0%
! AGGCCCTTAAAGTACTTGTT+GGG - chr4.3:84498835-84498854 MS.gene24922:CDS 40.0%
! AGTCTTTGAGTTCACCTAGA+AGG + chr4.3:84499561-84499580 None:intergenic 40.0%
! GACATATAGTTTAGGACCGT+TGG + chr4.3:84499467-84499486 None:intergenic 40.0%
! TTTCTAGTGGCTTCTCCAAT+GGG - chr4.3:84500413-84500432 MS.gene24922:CDS 40.0%
! TTTTGCATGGCAAGATGGAT+GGG + chr4.3:84498600-84498619 None:intergenic 40.0%
!! GCTTTGAAGCTAAATCAGCA+AGG - chr4.3:84498567-84498586 MS.gene24922:CDS 40.0%
!! TCCAAGTGTTTGTTTTCGAC+AGG + chr4.3:84499672-84499691 None:intergenic 40.0%
AAATAGAGGGGCTAAAGACC+TGG - chr4.3:84498875-84498894 MS.gene24922:CDS 45.0%
AATGGTAGAAATGGAGGACG+TGG + chr4.3:84500255-84500274 None:intergenic 45.0%
ACCTGATAAATTCCACCAGG+GGG + chr4.3:84500203-84500222 None:intergenic 45.0%
ATGATCTTGTCCCTTCAGAG+AGG - chr4.3:84499526-84499545 MS.gene24922:intron 45.0%
CAGAAGAGGAACGTAACACT+TGG - chr4.3:84500126-84500145 MS.gene24922:CDS 45.0%
CATTGGAGAAGCCACTAGAA+AGG + chr4.3:84500414-84500433 None:intergenic 45.0%
CTAGCGATAAACCAACCCAT+TGG + chr4.3:84500431-84500450 None:intergenic 45.0%
CTTGAGCAGCAGCTTTCAAT+CGG + chr4.3:84498389-84498408 None:intergenic 45.0%
GCCACCCAACAAGTACTTTA+AGG + chr4.3:84498842-84498861 None:intergenic 45.0%
GGCGTTCAAACCATTGTCAT+CGG + chr4.3:84500234-84500253 None:intergenic 45.0%
GTTAGTGCTACCGATGACAA+TGG - chr4.3:84500221-84500240 MS.gene24922:CDS 45.0%
TTTGCATGGCAAGATGGATG+GGG + chr4.3:84498599-84498618 None:intergenic 45.0%
! AAGGAGTTTTCTTCGGGTGT+AGG + chr4.3:84499632-84499651 None:intergenic 45.0%
! ACTGATTTCCCAGCATTTCC+TGG + chr4.3:84500284-84500303 None:intergenic 45.0%
! AGTGCTTGCTAGGTCTAATG+CGG + chr4.3:84499958-84499977 None:intergenic 45.0%
! CCCTTAAAGTACTTGTTGGG+TGG - chr4.3:84498838-84498857 MS.gene24922:CDS 45.0%
! CTCTGAAGGGACAAGATCAT+AGG + chr4.3:84499526-84499545 None:intergenic 45.0%
! CTTTCTAGTGGCTTCTCCAA+TGG - chr4.3:84500412-84500431 MS.gene24922:CDS 45.0%
! GAGGCCCTTAAAGTACTTGT+TGG - chr4.3:84498834-84498853 MS.gene24922:CDS 45.0%
! GTTTTGCATGGCAAGATGGA+TGG + chr4.3:84498601-84498620 None:intergenic 45.0%
!! GCATCACTGACTTCTAAGCT+AGG + chr4.3:84500020-84500039 None:intergenic 45.0%
!! GGTTGTTTTGCATGGCAAGA+TGG + chr4.3:84498605-84498624 None:intergenic 45.0%
!! TGGCACATTTCTAGTAGCCA+TGG - chr4.3:84500517-84500536 MS.gene24922:CDS 45.0%
GATCATAGGTCCAAGACACG+TGG + chr4.3:84499512-84499531 None:intergenic 50.0%
GCAACCGCGATCTATCAATC+AGG - chr4.3:84500170-84500189 MS.gene24922:CDS 50.0%
TAGTGGCTTCTCCAATGGGT+TGG - chr4.3:84500417-84500436 MS.gene24922:CDS 50.0%
TCCCCCTGGTGGAATTTATC+AGG - chr4.3:84500199-84500218 MS.gene24922:CDS 50.0%
TTGAAAGCTGCTGCTCAAGC+AGG - chr4.3:84498390-84498409 MS.gene24922:CDS 50.0%
! GACTTGCTTTCCACGTGTCT+TGG - chr4.3:84499499-84499518 MS.gene24922:intron 50.0%
! GCTGGGAAATCAGTCTTGTC+AGG - chr4.3:84500290-84500309 MS.gene24922:CDS 50.0%
!! TGATCTCTGGAGTGCTTGCT+AGG + chr4.3:84499968-84499987 None:intergenic 50.0%
CAATCAGGATTGAGTCCCCC+TGG - chr4.3:84500185-84500204 MS.gene24922:CDS 55.0%
AGCACTAAGGAGTGACCCGC+AGG - chr4.3:84498953-84498972 MS.gene24922:CDS 60.0%
TCAGGATTGAGTCCCCCTGG+TGG - chr4.3:84500188-84500207 MS.gene24922:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 84498363 84500655 84498363 ID=MS.gene24922
chr4.3 mRNA 84498363 84500655 84498363 ID=MS.gene24922.t1;Parent=MS.gene24922
chr4.3 exon 84500044 84500655 84500044 ID=MS.gene24922.t1.exon1;Parent=MS.gene24922.t1
chr4.3 CDS 84500044 84500655 84500044 ID=cds.MS.gene24922.t1;Parent=MS.gene24922.t1
chr4.3 exon 84498363 84499127 84498363 ID=MS.gene24922.t1.exon2;Parent=MS.gene24922.t1
chr4.3 CDS 84498363 84499127 84498363 ID=cds.MS.gene24922.t1;Parent=MS.gene24922.t1
Gene Sequence

>MS.gene24922

ATGAACACCACAAATAATAGTGACCGATTGAAAGCTGCTGCTCAAGCAGGTAATATAGATCTCCTCTATACTGTAGTTCAAGATGATCCATACATTTTGGAGCGTATAGATTTGATACCATTTGTTGAAACTCCTTTACATACTGCTGCATCTATGGGTCATCTTCAATTTGCCACCGAAATTATGAATTTGAAACCTTCATTTGCTTTGAAGCTAAATCAGCAAGGATTCAGCCCCATCCATCTTGCCATGCAAAACAACCAAGAACATATGGTGTATCGCTTTGTGTTTATCAATGAAGACCTTGTTACAGTTAAAGGAAGAGAAGGCTTAACTCCTCTTCATTTTGCAAGTCAAATTGGTGAGATTGAAATTTTAGCTCACTTTCTCATATTGTGTTCGGAATCCATTGATTACTTGACTGTTAAGCGCGAGACTGCGCTTCATATTGCTGTTAAGAATGGACAGTATGAGGCCCTTAAAGTACTTGTTGGGTGGCTCAAAAGAAATACAAATAGAGGGGCTAAAGACCTGGAGTACAAAATTTTAAATAGGAGGGATGAGGAACACAACACCATTTTGCATATCTCAGCACTAAGGAGTGACCCGCAGGTAATCTTATGCCATTCGTAAAAAAGAACACATTTAGAATCCAAAAGAAAATGACTCTCATGTAGTTTATCGGTGTTTTTGGTGACATAAGTGTTAGTTTTAAAATGTTACTTGCATGATTAAACTAGAAATCTTAGAACATATTGTACAATGTTTTTTCAGAAATTGTTTGAATGTTCATCACATTCTTTGAGTTTTAATGTAATAAGATAAACATAATTGTCTAATTCGACATAAATCAACAAGGATGTGTATGACTTTAAGAGAAAAGTAAAAAGCTTTAAATACAAAAACAAAGGAACTAAAAAGAAAGTAATTTGCATTGCATTGCATTGATTAAAGTGTTCATCAAATCAGTTATATACATTCTTAACTCTTTTCTCTCTTCGCTTGGATAATTCAAGTGTGAAGAACTTTTGCATGTGATTTGTGACTCTGTTTTCCTATGAAAAACTACTATATATACGTAAAAAAAATTAACTGAAAAAACCAACGGTCCTAAACTATATGTCTTCCACATACTTGACTTGCTTTCCACGTGTCTTGGACCTATGATCTTGTCCCTTCAGAGAGGATTTGAATTCCTTCTAGGTGAACTCAAAGACTTGAAAATGTTAATTTACATCAAATCTTGTCGAATGCATTTGTATTCAACCTACACCCGAAGAAAACTCCTTTTTGATGAATACCTTTTCCTGTCGAAAACAAACACTTGGAAACACAGGTTAACACATGTTACTTTTTGTATTGTTGTAAATGATGACCATATTTGTTATTACATTTTCATGTTCTACTGATGCGTCATCTTTTTCATTGAAAAACACGAAAGACTAATTATAAATAAGGTAGGTTGTTTAGTTGATAACATGAATGATCTCTAACAATTGTATCGTTCTTTAATTTCTTGGTAGAACAGGCACTTCTATTGTTGTTAAGTACTGGCCGTATAAATTTGGAGTTAAAGAATCTGGAGAACGAAACCGCATTAGACCTAGCAAGCACTCCAGAGATCAAGAGTACATTATTAAGTTTTGGAGCAAAACCTAGCTTAGAAGTCAGTGATGCTCCCAAAATTGCACATATTCTCAGGTCAAAGACCACAATAGTACATAATATGAGGATTTTTAAAACTCGCATTAGCAGAAACATAGCAGAAGAGGAACGTAACACTTGGATGATAGTTGTGACTCTTGTTGCAACCGCGATCTATCAATCAGGATTGAGTCCCCCTGGTGGAATTTATCAGGTTAGTGCTACCGATGACAATGGTTTGAACGCCACGTCCTCCATTTCTACCATTTTTACTCCAGGAAATGCTGGGAAATCAGTCTTGTCAGGATATGAATTCATTTTGTTTTTATTTGTAAATATGTATTCCTTTTCTGTATCAGTTTTAGCGATATTTTTAATGATACCATTACCAAGTAGAACAATAGCCTTTCTAGTGGCTTCTCCAATGGGTTGGTTTATCGCTAGTTATTTATTTTCTATGTGGAGGATATCCCCTACACATGTCATTTCCATGATTTTATTCATCGTTTTTGGCACATTTCTAGTAGCCATGGTGATTGACTTCAGTTTTGCAAGGTACTCAATGCTTAAACACAGAATTGCTAGGATAGTTAAAGCCTTAAAGGTTCGTTTCGTTAATCGTTGCAAAGGAGAAACACCAATGATGTAA

Protein sequence

>MS.gene24922.t1

MNTTNNSDRLKAAAQAGNIDLLYTVVQDDPYILERIDLIPFVETPLHTAASMGHLQFATEIMNLKPSFALKLNQQGFSPIHLAMQNNQEHMVYRFVFINEDLVTVKGREGLTPLHFASQIGEIEILAHFLILCSESIDYLTVKRETALHIAVKNGQYEALKVLVGWLKRNTNRGAKDLEYKILNRRDEEHNTILHISALRSDPQALLLLLSTGRINLELKNLENETALDLASTPEIKSTLLSFGAKPSLEVSDAPKIAHILRSKTTIVHNMRIFKTRISRNIAEEERNTWMIVVTLVATAIYQSGLSPPGGIYQVSATDDNGLNATSSISTIFTPGNAGKSVLSGYEFILFLFVNMYSFSVSVLAIFLMIPLPSRTIAFLVASPMGWFIASYLFSMWRISPTHVISMILFIVFGTFLVAMVIDFSFARYSMLKHRIARIVKALKVRFVNRCKGETPMM