AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99588


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99588.t1 MTR_8g072510 82.132 319 56 1 1 319 1 318 0.0 531
MS.gene99588.t1 MTR_8g039620 68.358 335 101 3 4 335 8 340 1.22e-154 442
MS.gene99588.t1 MTR_3g016210 61.813 364 123 4 1 350 1 362 5.90e-149 428
MS.gene99588.t1 MTR_7g021090 62.824 347 112 4 6 348 5 338 6.91e-148 424
MS.gene99588.t1 MTR_1g059930 67.197 314 102 1 8 321 10 322 9.64e-148 425
MS.gene99588.t1 MTR_8g062410 65.774 336 106 3 1 335 1 328 4.81e-147 424
MS.gene99588.t1 MTR_7g451420 66.019 309 104 1 6 314 5 312 4.81e-140 401
MS.gene99588.t1 MTR_8g073260 62.540 315 116 2 1 314 1 314 3.68e-139 404
MS.gene99588.t1 MTR_8g068990 63.722 317 95 5 2 314 4 304 1.22e-135 395
MS.gene99588.t1 MTR_8g069880 59.064 342 131 6 6 344 3 338 8.23e-126 370
MS.gene99588.t1 MTR_8g467780 58.841 328 121 4 9 326 10 333 3.16e-124 366
MS.gene99588.t1 MTR_8g040930 65.038 266 89 2 52 314 1 265 1.06e-117 346
MS.gene99588.t1 MTR_8g041240 65.038 266 89 2 52 314 1 265 1.06e-117 346
MS.gene99588.t1 MTR_8g066670 60.000 310 121 3 6 314 1071 1378 6.44e-114 362
MS.gene99588.t1 MTR_3g105650 43.947 380 192 4 8 368 3 380 4.32e-99 300
MS.gene99588.t1 MTR_8g073275 43.363 339 118 6 52 327 1 328 1.60e-79 251
MS.gene99588.t1 MTR_1g069110 26.954 371 215 13 2 357 13 342 9.86e-25 105
MS.gene99588.t1 MTR_7g117620 31.100 209 128 3 45 249 119 315 1.97e-18 87.0
MS.gene99588.t1 MTR_7g099580 24.359 312 182 7 10 315 12 275 8.25e-18 84.0
MS.gene99588.t1 MTR_2g101310 28.241 216 137 4 41 248 137 342 1.68e-16 81.3
MS.gene99588.t1 MTR_2g101310 28.241 216 137 4 41 248 137 342 2.45e-16 80.9
MS.gene99588.t1 MTR_2g101320 27.700 213 136 4 41 245 137 339 3.04e-16 80.5
MS.gene99588.t1 MTR_7g099570 28.497 193 124 3 10 197 9 192 4.67e-16 80.1
MS.gene99588.t1 MTR_8g105260 27.103 214 136 3 45 250 101 302 3.87e-14 73.9
MS.gene99588.t1 MTR_4g062100 24.923 325 206 8 10 310 74 384 8.22e-14 73.2
MS.gene99588.t1 MTR_1g115575 25.763 295 173 7 45 311 169 445 1.67e-13 72.0
MS.gene99588.t1 MTR_1g032100 26.168 214 138 3 45 250 94 295 2.35e-13 71.6
MS.gene99588.t1 MTR_2g096190 25.620 242 163 4 10 247 70 298 1.20e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99588.t1 AT4G10720 41.018 334 185 4 9 334 4 333 3.62e-80 253
MS.gene99588.t1 AT4G10720 41.212 330 182 4 9 330 4 329 4.92e-80 251
MS.gene99588.t1 AT1G14500 39.683 315 182 3 9 315 4 318 4.23e-74 236
MS.gene99588.t1 AT1G14480 39.375 320 175 5 9 314 4 318 3.39e-73 234
MS.gene99588.t1 AT5G15500 41.158 311 174 4 10 312 6 315 1.05e-70 228
MS.gene99588.t1 AT5G54620 40.065 307 176 3 9 308 4 309 3.72e-68 221
MS.gene99588.t1 AT5G54610 37.171 304 181 4 9 305 4 304 1.10e-62 207
MS.gene99588.t1 AT1G14480 36.482 307 159 5 9 314 4 275 1.58e-55 187
MS.gene99588.t1 AT5G15500 36.667 210 124 4 111 312 1 209 1.78e-29 117
MS.gene99588.t1 AT5G51160 27.946 297 181 5 42 315 13 299 2.98e-27 112
MS.gene99588.t1 AT2G01680 28.436 211 131 3 45 247 97 295 2.43e-16 80.9
MS.gene99588.t1 AT4G03460 29.279 222 121 5 101 311 290 486 3.92e-16 80.5
MS.gene99588.t1 AT4G03460 29.279 222 121 5 101 311 258 454 4.87e-16 80.1
MS.gene99588.t1 AT1G34050 25.407 307 201 7 23 315 132 424 6.49e-16 79.7
MS.gene99588.t1 AT1G07710 28.400 250 162 4 10 255 70 306 4.26e-15 77.0
MS.gene99588.t1 AT1G07710 28.400 250 162 4 10 255 70 306 4.26e-15 77.0
MS.gene99588.t1 AT4G03500 28.000 225 125 6 99 311 303 502 7.69e-15 76.6
MS.gene99588.t1 AT4G03500 28.000 225 125 6 99 311 280 479 8.23e-15 76.3
MS.gene99588.t1 AT4G03500 28.000 225 125 6 99 311 280 479 8.23e-15 76.3
MS.gene99588.t1 AT5G54700 27.854 219 117 6 102 315 23 205 1.88e-14 74.3
MS.gene99588.t1 AT1G03670 27.928 222 121 6 102 311 279 473 3.61e-13 71.2
MS.gene99588.t1 AT1G05640 25.939 293 181 8 45 315 191 469 4.22e-13 71.2
MS.gene99588.t1 AT3G12360 26.280 293 174 8 45 311 167 443 2.18e-12 68.9
MS.gene99588.t1 AT3G12360 26.280 293 174 8 45 311 155 431 2.31e-12 68.6
MS.gene99588.t1 AT4G03450 26.923 208 134 5 110 312 291 485 3.64e-12 68.2
MS.gene99588.t1 AT4G03450 26.923 208 134 5 110 312 291 485 3.67e-12 68.2
MS.gene99588.t1 AT5G54710 24.910 277 170 9 66 315 187 452 6.09e-12 67.4
MS.gene99588.t1 AT5G54710 24.910 277 170 9 66 315 232 497 6.82e-12 67.4
MS.gene99588.t1 AT3G09550 25.298 336 192 10 10 311 147 457 2.06e-11 65.9
MS.gene99588.t1 AT3G09550 25.298 336 192 10 10 311 147 457 2.06e-11 65.9
MS.gene99588.t1 AT3G09550 25.298 336 192 10 10 311 154 464 2.54e-11 65.5
MS.gene99588.t1 AT2G31820 27.572 243 139 9 22 244 193 418 5.16e-11 64.7

Find 75 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGACCTTGTTAGAGTTAA+AGG 0.117136 8.3:-29921521 MS.gene99588:CDS
TCAAGATGCTCCATACATTT+TGG 0.180997 8.3:-29921741 MS.gene99588:CDS
CAATCGGTCTCCATTAATTA+TGG 0.211396 8.3:+29921811 None:intergenic
CTTCATTATGCAAGTGAAAT+TGG 0.222947 8.3:-29921479 MS.gene99588:CDS
AACATGGACACCATAATTAA+TGG 0.291357 8.3:-29921821 MS.gene99588:CDS
TCTTATTATAAGATCAAATC+TGG 0.296677 8.3:+29920913 None:intergenic
ATTTCTACCCCAGGAAATAC+TGG 0.311728 8.3:-29920121 MS.gene99588:intron
AGCGATACACCACAAGTTCT+TGG 0.311803 8.3:+29921558 None:intergenic
TTTGCAACTCAAACCACTTC+TGG 0.314695 8.3:-29919696 MS.gene99588:CDS
GTTCATTCTTAACAGCAATA+TGG 0.326006 8.3:+29921375 None:intergenic
TGTCAGGATATGAATTCTAT+TGG 0.369776 8.3:-29920087 MS.gene99588:intron
ATTTATATAGATCGCATTAG+AGG 0.376817 8.3:-29920860 MS.gene99588:CDS
TTTCAAATTCATAGTTTCAA+TGG 0.382782 8.3:+29921646 None:intergenic
GTTAGAGTTAAAGGCAGAAA+AGG 0.386512 8.3:-29921512 MS.gene99588:CDS
TAAATTTGAACGCAAAGAAT+AGG 0.392595 8.3:-29921036 MS.gene99588:CDS
TTTACATATTGCTGCATCCA+TGG 0.394377 8.3:-29921684 MS.gene99588:CDS
GTCATGGATTCAATGGATTC+CGG 0.416684 8.3:+29921419 None:intergenic
CTCTTCAAGTACTTGTTAGC+TGG 0.417708 8.3:-29921343 MS.gene99588:CDS
TGTTAAGAATGAACAATTTG+AGG 0.419354 8.3:-29921366 MS.gene99588:CDS
TAGTGCTGAAATATGCAAAA+TGG 0.420503 8.3:+29921244 None:intergenic
TAGAGGAGGAACGTAACATT+TGG 0.427395 8.3:-29920829 MS.gene99588:CDS
AGAAACATCAACAAAGGTTA+TGG 0.427437 8.3:-29919766 MS.gene99588:CDS
TCTATATGCTCCAAAATGTA+TGG 0.431564 8.3:+29921731 None:intergenic
AATATTAAACCAAAGGGATA+AGG 0.439552 8.3:-29921276 MS.gene99588:CDS
TGTAAAGGAGTTTCAACAAA+TGG 0.448723 8.3:+29921701 None:intergenic
CGGTCTAGTGGTTACTCCAA+TGG 0.449788 8.3:-29919987 MS.gene99588:CDS
TCTAGTTTCAAAGCAAATGA+AGG 0.453815 8.3:+29921623 None:intergenic
CTTCAGCTGCAGCTTTCAAT+CGG 0.457238 8.3:+29921795 None:intergenic
ACAGAGAGGGGCTCAAAAGC+TGG 0.457479 8.3:-29921306 MS.gene99588:CDS
CCTCACAGTCATGGATTCAA+TGG 0.461294 8.3:+29921412 None:intergenic
TGTTGCGTGCCTTATCCCTT+TGG 0.461518 8.3:+29921267 None:intergenic
GCAACTGCCATCTATCAATC+AGG 0.470824 8.3:-29920785 MS.gene99588:CDS
GGTCTAGTGGTTACTCCAAT+GGG 0.477772 8.3:-29919986 MS.gene99588:intron
ACTGGGAAATCAGTCTTGTC+AGG 0.480027 8.3:-29920103 MS.gene99588:CDS
ACTCAATCCTGATTGATAGA+TGG 0.480622 8.3:+29920778 None:intergenic
TTGAAAGCTGCAGCTGAAGC+AGG 0.480701 8.3:-29921791 MS.gene99588:CDS
CTTCTATTGCTGATAAGTAC+TGG 0.494882 8.3:-29921061 MS.gene99588:CDS
AATAATATACTCTTGATCTC+TGG 0.495445 8.3:+29920980 None:intergenic
AAATTTGAACGCAAAGAATA+GGG 0.497933 8.3:-29921035 MS.gene99588:CDS
CAATGGATTCCGGACACAAA+AGG 0.503714 8.3:+29921429 None:intergenic
AAAGAAAATATTAAACCAAA+GGG 0.511156 8.3:-29921282 MS.gene99588:CDS
TTAGAGTTAAAGGCAGAAAA+GGG 0.511640 8.3:-29921511 MS.gene99588:CDS
TTAAGTGTTGGAGCAAAACC+TGG 0.512657 8.3:-29920959 MS.gene99588:CDS
CATTAGAGGAGATATATTAG+AGG 0.516069 8.3:-29920846 MS.gene99588:CDS
TCATCAGTGACTTCTGTGCC+AGG 0.522148 8.3:+29920941 None:intergenic
TTACATATTGCTGCATCCAT+GGG 0.527095 8.3:-29921683 MS.gene99588:CDS
AAGAGTATATTATTAAGTGT+TGG 0.527914 8.3:-29920971 MS.gene99588:CDS
GGCAAAATCGAGATGACCCA+TGG 0.542500 8.3:+29921667 None:intergenic
CATGCCATCATCTATATGAC+CGG 0.546608 8.3:+29919740 None:intergenic
GCAAAATAACCAAGAACTTG+TGG 0.556937 8.3:-29921567 MS.gene99588:CDS
TCAACAAAGGTTATGGTCGC+CGG 0.560307 8.3:-29919759 MS.gene99588:CDS
AAAAGAAAATATTAAACCAA+AGG 0.562607 8.3:-29921283 MS.gene99588:CDS
ATTTCACTTGCATAATGAAG+AGG 0.565575 8.3:+29921482 None:intergenic
AGCACTAAGCAGTGACCCGC+AGG 0.569895 8.3:-29921228 MS.gene99588:intron
ATGGATGCAGCAATATGTAA+AGG 0.578412 8.3:+29921686 None:intergenic
TTTGCATTGCGAGATGGATG+GGG 0.578706 8.3:+29921585 None:intergenic
GTCGCCGGTCATATAGATGA+TGG 0.579073 8.3:-29919744 MS.gene99588:CDS
TTCTGCCTTTAACTCTAACA+AGG 0.584572 8.3:+29921516 None:intergenic
CTTATTATAAGATCAAATCT+GGG 0.586962 8.3:+29920914 None:intergenic
CATCTTGAATTACTGTGTAG+AGG 0.592515 8.3:+29921756 None:intergenic
CTAACCTGATAAATTCCACC+AGG 0.595881 8.3:+29920752 None:intergenic
TGGAATAATAGGCGGTCTAG+TGG 0.598901 8.3:-29919999 MS.gene99588:intron
AATAGGAGAAACATCAACAA+AGG 0.602509 8.3:-29919772 MS.gene99588:intron
AGTCTCGCGCCTCACAGTCA+TGG 0.604154 8.3:+29921403 None:intergenic
TTTCTACCCCAGGAAATACT+GGG 0.621052 8.3:-29920120 MS.gene99588:intron
TTATGCAAGTGAAATTGGTG+AGG 0.624400 8.3:-29921474 MS.gene99588:CDS
TAGAGGAGATATATTAGAGG+AGG 0.635544 8.3:-29920843 MS.gene99588:CDS
GTCATATAGATGATGGCATG+AGG 0.659425 8.3:-29919737 MS.gene99588:CDS
TGGATGGGGCTGAATCCTTG+CGG 0.668802 8.3:+29921599 None:intergenic
TTTGAACGCAAAGAATAGGG+AGG 0.686776 8.3:-29921032 MS.gene99588:CDS
AACCTGATAAATTCCACCAG+GGG 0.693447 8.3:+29920754 None:intergenic
TAACCTGATAAATTCCACCA+GGG 0.695982 8.3:+29920753 None:intergenic
CCATTGAATCCATGACTGTG+AGG 0.701221 8.3:-29921412 MS.gene99588:CDS
ACCTGATAAATTCCACCAGG+GGG 0.706697 8.3:+29920755 None:intergenic
GCTTTGAAACTAGATCCGCA+AGG 0.724051 8.3:-29921614 MS.gene99588:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAATATTAAACCAA+AGG - chr8.3:29920212-29920231 MS.gene99588:intron 15.0%
!! AAAATACATATACATAAATG+TGG - chr8.3:29921017-29921036 MS.gene99588:CDS 15.0%
!! AAAGAAAATATTAAACCAAA+GGG - chr8.3:29920213-29920232 MS.gene99588:intron 15.0%
!! AAATACATATACATAAATGT+GGG - chr8.3:29921018-29921037 MS.gene99588:CDS 15.0%
!! CATAGAAAATATATAACTTA+AGG + chr8.3:29921543-29921562 None:intergenic 15.0%
!! GAAAACAATGAATAAAATAA+CGG + chr8.3:29921594-29921613 None:intergenic 15.0%
!! TATATGTTATAAATTGCATA+TGG - chr8.3:29920966-29920985 MS.gene99588:CDS 15.0%
!! TGTATTATTCATTAATTTCT+TGG - chr8.3:29920400-29920419 MS.gene99588:intron 15.0%
!!! ATTTAACATTATTCTTGTTT+TGG + chr8.3:29920947-29920966 None:intergenic 15.0%
!!! ATTTATGTATATGTATTTTC+TGG + chr8.3:29921016-29921035 None:intergenic 15.0%
!!! TAAGTTATATATTTTCTATG+TGG - chr8.3:29921543-29921562 MS.gene99588:CDS 15.0%
!!! TCTATATCTTATTTATAAGT+TGG + chr8.3:29920352-29920371 None:intergenic 15.0%
!!! TTTGTTCATTTTTTTGATAA+GGG + chr8.3:29921140-29921159 None:intergenic 15.0%
!!! TTTTGTTCATTTTTTTGATA+AGG + chr8.3:29921141-29921160 None:intergenic 15.0%
!! CTTATTATAAGATCAAATCT+GGG + chr8.3:29920584-29920603 None:intergenic 20.0%
!! TCTTATTATAAGATCAAATC+TGG + chr8.3:29920585-29920604 None:intergenic 20.0%
!! TTTCAAATTCATAGTTTCAA+TGG + chr8.3:29919852-29919871 None:intergenic 20.0%
!!! AAGAGTATATTATTAAGTGT+TGG - chr8.3:29920524-29920543 MS.gene99588:intron 20.0%
!!! ATCTTATTTATAAGTTGGTA+GGG + chr8.3:29920347-29920366 None:intergenic 20.0%
!!! GAAATATGTGATTTTAGTAA+TGG + chr8.3:29920309-29920328 None:intergenic 20.0%
!!! TATCTTATTTATAAGTTGGT+AGG + chr8.3:29920348-29920367 None:intergenic 20.0%
! AAATTTGAACGCAAAGAATA+GGG - chr8.3:29920460-29920479 MS.gene99588:intron 25.0%
! AATAATATACTCTTGATCTC+TGG + chr8.3:29920518-29920537 None:intergenic 25.0%
! AATATTAAACCAAAGGGATA+AGG - chr8.3:29920219-29920238 MS.gene99588:intron 25.0%
! ATACTTATTATGATGCCATA+TGG - chr8.3:29921476-29921495 MS.gene99588:CDS 25.0%
! ATTTATATAGATCGCATTAG+AGG - chr8.3:29920635-29920654 MS.gene99588:intron 25.0%
! TAAATTTGAACGCAAAGAAT+AGG - chr8.3:29920459-29920478 MS.gene99588:intron 25.0%
! TCAAGAAAAATATACAGAGA+GGG - chr8.3:29920176-29920195 MS.gene99588:intron 25.0%
! TGTTAAGAATGAACAATTTG+AGG - chr8.3:29920129-29920148 MS.gene99588:intron 25.0%
!! GTTATATATTTTCTATGTGG+AGG - chr8.3:29921546-29921565 MS.gene99588:CDS 25.0%
!! TGTGAAGGAATGAAAAATTT+TGG - chr8.3:29921044-29921063 MS.gene99588:CDS 25.0%
!!! AATGAAAAATTTTGGCCTTT+CGG - chr8.3:29921052-29921071 MS.gene99588:CDS 25.0%
!!! TCTTATTTATAAGTTGGTAG+GGG + chr8.3:29920346-29920365 None:intergenic 25.0%
AAAATCGCAATCAAAATCGA+AGG - chr8.3:29920838-29920857 MS.gene99588:CDS 30.0%
AAAGACCTTGTTAGAGTTAA+AGG - chr8.3:29919974-29919993 MS.gene99588:intron 30.0%
AATAGGAGAAACATCAACAA+AGG - chr8.3:29921723-29921742 MS.gene99588:CDS 30.0%
AGAAACATCAACAAAGGTTA+TGG - chr8.3:29921729-29921748 MS.gene99588:CDS 30.0%
ATGATGCCATATGGAATAAT+AGG - chr8.3:29921485-29921504 MS.gene99588:CDS 30.0%
ATTTCACTTGCATAATGAAG+AGG + chr8.3:29920016-29920035 None:intergenic 30.0%
CAAGAAAAATATACAGAGAG+GGG - chr8.3:29920177-29920196 MS.gene99588:intron 30.0%
CATTAGAGGAGATATATTAG+AGG - chr8.3:29920649-29920668 MS.gene99588:intron 30.0%
CTCAAGAAAAATATACAGAG+AGG - chr8.3:29920175-29920194 MS.gene99588:intron 30.0%
CTTCATTATGCAAGTGAAAT+TGG - chr8.3:29920016-29920035 MS.gene99588:intron 30.0%
GTTCATTCTTAACAGCAATA+TGG + chr8.3:29920123-29920142 None:intergenic 30.0%
TAAAATCGCAATCAAAATCG+AGG - chr8.3:29920837-29920856 MS.gene99588:CDS 30.0%
TCTATATGCTCCAAAATGTA+TGG + chr8.3:29919767-29919786 None:intergenic 30.0%
TGTAAAGGAGTTTCAACAAA+TGG + chr8.3:29919797-29919816 None:intergenic 30.0%
TGTCAGGATATGAATTCTAT+TGG - chr8.3:29921408-29921427 MS.gene99588:CDS 30.0%
TTAGAGTTAAAGGCAGAAAA+GGG - chr8.3:29919984-29920003 MS.gene99588:intron 30.0%
! AAATCGAAGGATTTTACTCA+AGG - chr8.3:29920851-29920870 MS.gene99588:CDS 30.0%
! CATTAATTTCTTGGTAGTAC+AGG - chr8.3:29920409-29920428 MS.gene99588:intron 30.0%
! TAGTGCTGAAATATGCAAAA+TGG + chr8.3:29920254-29920273 None:intergenic 30.0%
! TCTAGTTTCAAAGCAAATGA+AGG + chr8.3:29919875-29919894 None:intergenic 30.0%
!! AGTCAAAGCATTGTTTCAAT+AGG - chr8.3:29921706-29921725 MS.gene99588:CDS 30.0%
!! ATAGGATTTTGCCTGTTTTT+GGG - chr8.3:29921223-29921242 MS.gene99588:intron 30.0%
!! ATGAAAAATTTTGGCCTTTC+GGG - chr8.3:29921053-29921072 MS.gene99588:CDS 30.0%
!!! AGGATTTTGATGGATTTTGA+AGG + chr8.3:29921165-29921184 None:intergenic 30.0%
ACAAGAATAAGATTACCTGC+GGG + chr8.3:29920285-29920304 None:intergenic 35.0%
ACTCAATCCTGATTGATAGA+TGG + chr8.3:29920720-29920739 None:intergenic 35.0%
ATGCCATATGGAATAATAGG+CGG - chr8.3:29921488-29921507 MS.gene99588:CDS 35.0%
ATGGATGCAGCAATATGTAA+AGG + chr8.3:29919812-29919831 None:intergenic 35.0%
CAATCGGTCTCCATTAATTA+TGG + chr8.3:29919687-29919706 None:intergenic 35.0%
CACAAGAATAAGATTACCTG+CGG + chr8.3:29920286-29920305 None:intergenic 35.0%
CATCTTGAATTACTGTGTAG+AGG + chr8.3:29919742-29919761 None:intergenic 35.0%
CGCTAAAATTGATGCAGTAA+AGG + chr8.3:29921456-29921475 None:intergenic 35.0%
CGTTTCAAATCTGTTATACC+TGG - chr8.3:29921613-29921632 MS.gene99588:CDS 35.0%
CTTCTATTGCTGATAAGTAC+TGG - chr8.3:29920434-29920453 MS.gene99588:intron 35.0%
GACTTTACTTCAAGTCGAAA+GGG - chr8.3:29920794-29920813 MS.gene99588:CDS 35.0%
GCAAAATAACCAAGAACTTG+TGG - chr8.3:29919928-29919947 MS.gene99588:intron 35.0%
GTGACCAAGGTTATCAAAAT+CGG - chr8.3:29920771-29920790 MS.gene99588:CDS 35.0%
GTTAGAGTTAAAGGCAGAAA+AGG - chr8.3:29919983-29920002 MS.gene99588:intron 35.0%
TAACCTGATAAATTCCACCA+GGG + chr8.3:29920745-29920764 None:intergenic 35.0%
TAACGGAATTGACATGTGTA+GGG + chr8.3:29921577-29921596 None:intergenic 35.0%
TAGAGGAGATATATTAGAGG+AGG - chr8.3:29920652-29920671 MS.gene99588:intron 35.0%
TGAAATCCATTCAAAATCGC+AGG + chr8.3:29921185-29921204 None:intergenic 35.0%
TGACCAAGGTTATCAAAATC+GGG - chr8.3:29920772-29920791 MS.gene99588:CDS 35.0%
TTACATATTGCTGCATCCAT+GGG - chr8.3:29919812-29919831 MS.gene99588:intron 35.0%
TTATGCAAGTGAAATTGGTG+AGG - chr8.3:29920021-29920040 MS.gene99588:intron 35.0%
TTCTGCCTTTAACTCTAACA+AGG + chr8.3:29919982-29920001 None:intergenic 35.0%
TTTACATATTGCTGCATCCA+TGG - chr8.3:29919811-29919830 MS.gene99588:intron 35.0%
! ATAACGGAATTGACATGTGT+AGG + chr8.3:29921578-29921597 None:intergenic 35.0%
! ATAAGGGTCAATTTTTGACC+TGG + chr8.3:29921124-29921143 None:intergenic 35.0%
! CAAAATCCTGCGATTTTGAA+TGG - chr8.3:29921176-29921195 MS.gene99588:intron 35.0%
! CCTTTCGGGTATTTATAGAA+CGG - chr8.3:29921067-29921086 MS.gene99588:CDS 35.0%
! CTTTCGGGTATTTATAGAAC+GGG - chr8.3:29921068-29921087 MS.gene99588:intron 35.0%
! GACTTTTGTAGAATCGATGT+AGG - chr8.3:29920873-29920892 MS.gene99588:CDS 35.0%
! GATAGGATTTTGCCTGTTTT+TGG - chr8.3:29921222-29921241 MS.gene99588:intron 35.0%
! TCAAAATCGCAGGATTTTGA+TGG + chr8.3:29921175-29921194 None:intergenic 35.0%
! TCAAGATGCTCCATACATTT+TGG - chr8.3:29919754-29919773 MS.gene99588:CDS 35.0%
! TTACTTTCTCCTTTTGTGTC+CGG - chr8.3:29920057-29920076 MS.gene99588:intron 35.0%
!! ATTTATAAGTTGGTAGGGGA+GGG + chr8.3:29920342-29920361 None:intergenic 35.0%
!! CGATTTTGTGCGATTTTGAT+AGG - chr8.3:29921205-29921224 MS.gene99588:intron 35.0%
!! TATTTATAAGTTGGTAGGGG+AGG + chr8.3:29920343-29920362 None:intergenic 35.0%
!!! AGGATTTTGAGACTTAAGTC+GGG - chr8.3:29921295-29921314 MS.gene99588:CDS 35.0%
!!! CAGGATTTTGAGACTTAAGT+CGG - chr8.3:29921294-29921313 MS.gene99588:CDS 35.0%
!!! TCAATTTTGGAGTGTACTCA+AGG - chr8.3:29921648-29921667 MS.gene99588:CDS 35.0%
AACCTGATAAATTCCACCAG+GGG + chr8.3:29920744-29920763 None:intergenic 40.0%
AACGGAATTGACATGTGTAG+GGG + chr8.3:29921576-29921595 None:intergenic 40.0%
AATTCTACCATTTCTACCCC+AGG - chr8.3:29921365-29921384 MS.gene99588:CDS 40.0%
AGACCGCCTATTATTCCATA+TGG + chr8.3:29921494-29921513 None:intergenic 40.0%
AGTATTTCCTGGGGTAGAAA+TGG + chr8.3:29921375-29921394 None:intergenic 40.0%
ATTTCTACCCCAGGAAATAC+TGG - chr8.3:29921374-29921393 MS.gene99588:CDS 40.0%
CATAAATGTGGGAGATGTGA+AGG - chr8.3:29921029-29921048 MS.gene99588:CDS 40.0%
CATAGCAAAGTCCCAAAAAC+AGG + chr8.3:29921237-29921256 None:intergenic 40.0%
CATGCCATCATCTATATGAC+CGG + chr8.3:29921758-29921777 None:intergenic 40.0%
CCGTTCTATAAATACCCGAA+AGG + chr8.3:29921070-29921089 None:intergenic 40.0%
CGACTTAAGTCTCAAAATCC+TGG + chr8.3:29921296-29921315 None:intergenic 40.0%
CTAACCTGATAAATTCCACC+AGG + chr8.3:29920746-29920765 None:intergenic 40.0%
CTGATTTCCCAGTATTTCCT+GGG + chr8.3:29921385-29921404 None:intergenic 40.0%
CTTAAGGTAAACGAACCCAT+TGG + chr8.3:29921527-29921546 None:intergenic 40.0%
GGACTTTACTTCAAGTCGAA+AGG - chr8.3:29920793-29920812 MS.gene99588:CDS 40.0%
GGTAGAAATGGTAGAATTGG+AGG + chr8.3:29921363-29921382 None:intergenic 40.0%
GGTATTTATAGAACGGGTCA+TGG - chr8.3:29921074-29921093 MS.gene99588:intron 40.0%
GTGTACTCAAGGCTTAAACA+CGG - chr8.3:29921659-29921678 MS.gene99588:CDS 40.0%
TAGAGGAGGAACGTAACATT+TGG - chr8.3:29920666-29920685 MS.gene99588:intron 40.0%
TCGAAAGGGAGTAGCAAAAT+CGG - chr8.3:29920808-29920827 MS.gene99588:CDS 40.0%
TCGATGTAGGATAGCAAAGT+CGG - chr8.3:29920886-29920905 MS.gene99588:CDS 40.0%
TCTGTTATACCTGGTGATTG+AGG - chr8.3:29921622-29921641 MS.gene99588:CDS 40.0%
TGATTTCCCAGTATTTCCTG+GGG + chr8.3:29921384-29921403 None:intergenic 40.0%
TGGGGTAGAAATGGTAGAAT+TGG + chr8.3:29921366-29921385 None:intergenic 40.0%
TTTCTACCCCAGGAAATACT+GGG - chr8.3:29921375-29921394 MS.gene99588:CDS 40.0%
TTTGAACGCAAAGAATAGGG+AGG - chr8.3:29920463-29920482 MS.gene99588:intron 40.0%
TTTGCAACTCAAACCACTTC+TGG - chr8.3:29921799-29921818 MS.gene99588:CDS 40.0%
! ACTGATTTCCCAGTATTTCC+TGG + chr8.3:29921386-29921405 None:intergenic 40.0%
! ATTTTGCATTGCGAGATGGA+TGG + chr8.3:29919915-29919934 None:intergenic 40.0%
! CTCTTCAAGTACTTGTTAGC+TGG - chr8.3:29920152-29920171 MS.gene99588:intron 40.0%
! GTCATATAGATGATGGCATG+AGG - chr8.3:29921758-29921777 MS.gene99588:CDS 40.0%
! GTCATGGATTCAATGGATTC+CGG + chr8.3:29920079-29920098 None:intergenic 40.0%
! GTGATTGAGGTCGTCAATTT+TGG - chr8.3:29921635-29921654 MS.gene99588:CDS 40.0%
! TTTTGCATTGCGAGATGGAT+GGG + chr8.3:29919914-29919933 None:intergenic 40.0%
!! AGTCCCGATTTTGATAACCT+TGG + chr8.3:29920778-29920797 None:intergenic 40.0%
!! GGTTATTTTGCATTGCGAGA+TGG + chr8.3:29919919-29919938 None:intergenic 40.0%
!! GTTTTGAATTCGACCAGAAG+TGG + chr8.3:29921815-29921834 None:intergenic 40.0%
!! TTAAGTGTTGGAGCAAAACC+TGG - chr8.3:29920536-29920555 MS.gene99588:intron 40.0%
!! TTTATAAGTTGGTAGGGGAG+GGG + chr8.3:29920341-29920360 None:intergenic 40.0%
!!! CTGTTTTTGGGACTTTGCTA+TGG - chr8.3:29921235-29921254 MS.gene99588:CDS 40.0%
AACGGGTCATGGATTCAAAC+CGG - chr8.3:29921085-29921104 MS.gene99588:intron 45.0%
AATTGACGACCTCAATCACC+AGG + chr8.3:29921634-29921653 None:intergenic 45.0%
ACCTGATAAATTCCACCAGG+GGG + chr8.3:29920743-29920762 None:intergenic 45.0%
AGCGATACACCACAAGTTCT+TGG + chr8.3:29919940-29919959 None:intergenic 45.0%
CCATTGAATCCATGACTGTG+AGG - chr8.3:29920083-29920102 MS.gene99588:intron 45.0%
CCTCACAGTCATGGATTCAA+TGG + chr8.3:29920086-29920105 None:intergenic 45.0%
CGAAAGGGAGTAGCAAAATC+GGG - chr8.3:29920809-29920828 MS.gene99588:CDS 45.0%
CGATGTAGGATAGCAAAGTC+GGG - chr8.3:29920887-29920906 MS.gene99588:CDS 45.0%
CTTCAGCTGCAGCTTTCAAT+CGG + chr8.3:29919703-29919722 None:intergenic 45.0%
GCAACTGCCATCTATCAATC+AGG - chr8.3:29920710-29920729 MS.gene99588:intron 45.0%
GGTCTAGTGGTTACTCCAAT+GGG - chr8.3:29921509-29921528 MS.gene99588:CDS 45.0%
TCAACAAAGGTTATGGTCGC+CGG - chr8.3:29921736-29921755 MS.gene99588:CDS 45.0%
TGGAATAATAGGCGGTCTAG+TGG - chr8.3:29921496-29921515 MS.gene99588:CDS 45.0%
TTTGCATTGCGAGATGGATG+GGG + chr8.3:29919913-29919932 None:intergenic 45.0%
! ACCTGGTTCGTAAATTGACC+CGG + chr8.3:29921107-29921126 None:intergenic 45.0%
! ACTGGGAAATCAGTCTTGTC+AGG - chr8.3:29921392-29921411 MS.gene99588:CDS 45.0%
! CAATGGATTCCGGACACAAA+AGG + chr8.3:29920069-29920088 None:intergenic 45.0%
!! GCTTTGAAACTAGATCCGCA+AGG - chr8.3:29919881-29919900 MS.gene99588:intron 45.0%
ACCGGGTCAATTTACGAACC+AGG - chr8.3:29921103-29921122 MS.gene99588:intron 50.0%
ACGGGTCATGGATTCAAACC+GGG - chr8.3:29921086-29921105 MS.gene99588:intron 50.0%
CAGGTTAGTGCTAGTGACCA+AGG - chr8.3:29920758-29920777 MS.gene99588:CDS 50.0%
CGGTCTAGTGGTTACTCCAA+TGG - chr8.3:29921508-29921527 MS.gene99588:CDS 50.0%
GGCAAAATCGAGATGACCCA+TGG + chr8.3:29919831-29919850 None:intergenic 50.0%
GTCGCCGGTCATATAGATGA+TGG - chr8.3:29921751-29921770 MS.gene99588:CDS 50.0%
TACGCAAGGTCGCAAAAACC+AGG - chr8.3:29921275-29921294 MS.gene99588:CDS 50.0%
TCATCAGTGACTTCTGTGCC+AGG + chr8.3:29920557-29920576 None:intergenic 50.0%
TCCCCCTGGTGGAATTTATC+AGG - chr8.3:29920739-29920758 MS.gene99588:intron 50.0%
TGAGTCGTTGAAGCTACGCA+AGG - chr8.3:29921261-29921280 MS.gene99588:CDS 50.0%
TGTTGCGTGCCTTATCCCTT+TGG + chr8.3:29920231-29920250 None:intergenic 50.0%
TTGAAAGCTGCAGCTGAAGC+AGG - chr8.3:29919704-29919723 MS.gene99588:CDS 50.0%
ACAGAGAGGGGCTCAAAAGC+TGG - chr8.3:29920189-29920208 MS.gene99588:intron 55.0%
CAATCAGGATTGAGTCCCCC+TGG - chr8.3:29920725-29920744 MS.gene99588:intron 55.0%
TGGATGGGGCTGAATCCTTG+CGG + chr8.3:29919899-29919918 None:intergenic 55.0%
!! ATAAGTTGGTAGGGGAGGGG+AGG + chr8.3:29920338-29920357 None:intergenic 55.0%
AGCACTAAGCAGTGACCCGC+AGG - chr8.3:29920267-29920286 MS.gene99588:intron 60.0%
AGTCTCGCGCCTCACAGTCA+TGG + chr8.3:29920095-29920114 None:intergenic 60.0%
TCAGGATTGAGTCCCCCTGG+TGG - chr8.3:29920728-29920747 MS.gene99588:intron 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 29919677 29921840 29919677 ID=MS.gene99588
chr8.3 mRNA 29919677 29921840 29919677 ID=MS.gene99588.t1;Parent=MS.gene99588
chr8.3 exon 29921229 29921840 29921229 ID=MS.gene99588.t1.exon1;Parent=MS.gene99588.t1
chr8.3 CDS 29921229 29921840 29921229 ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1
chr8.3 exon 29920757 29921086 29920757 ID=MS.gene99588.t1.exon2;Parent=MS.gene99588.t1
chr8.3 CDS 29920757 29921086 29920757 ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1
chr8.3 exon 29920088 29920130 29920088 ID=MS.gene99588.t1.exon3;Parent=MS.gene99588.t1
chr8.3 CDS 29920088 29920130 29920088 ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1
chr8.3 exon 29919987 29920010 29919987 ID=MS.gene99588.t1.exon4;Parent=MS.gene99588.t1
chr8.3 CDS 29919987 29920010 29919987 ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1
chr8.3 exon 29919677 29919789 29919677 ID=MS.gene99588.t1.exon5;Parent=MS.gene99588.t1
chr8.3 CDS 29919677 29919789 29919677 ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1
Gene Sequence

>MS.gene99588

ATGGACACCATAATTAATGGAGACCGATTGAAAGCTGCAGCTGAAGCAGGTGATGTAGATCTCCTCTACACAGTAATTCAAGATGCTCCATACATTTTGGAGCATATAGATTCAATACCATTTGTTGAAACTCCTTTACATATTGCTGCATCCATGGGTCATCTCGATTTTGCCATTGAAACTATGAATTTGAAACCTTCATTTGCTTTGAAACTAGATCCGCAAGGATTCAGCCCCATCCATCTCGCAATGCAAAATAACCAAGAACTTGTGGTGTATCGCTTTGTGTTTATCAATAAAGACCTTGTTAGAGTTAAAGGCAGAAAAGGGATAACTCCTCTTCATTATGCAAGTGAAATTGGTGAGGTTAAAATGTTAGCTTACTTTCTCCTTTTGTGTCCGGAATCCATTGAATCCATGACTGTGAGGCGCGAGACTGCACTCCATATTGCTGTTAAGAATGAACAATTTGAGGCTCTTCAAGTACTTGTTAGCTGGCTCAAGAAAAATATACAGAGAGGGGCTCAAAAGCTGGAAAAGAAAATATTAAACCAAAGGGATAAGGCACGCAACACCATTTTGCATATTTCAGCACTAAGCAGTGACCCGCAGGTAATCTTATTCTTGTGCCATTACTAAAATCACATATTTCTTGTCGCCTCCCCTCCCCTACCAACTTATAAATAAGATATAGAATTGCTAGCATGAATGATCTCTAACAATTGTATTATTCATTAATTTCTTGGTAGTACAGGCACTTCTATTGCTGATAAGTACTGGTATAAATTTGAACGCAAAGAATAGGGAGGACAAAACTGCATTAGACATAGCAAGCACACCAGAGATCAAGAGTATATTATTAAGTGTTGGAGCAAAACCTGGCACAGAAGTCACTGATGATTGTCCCAGATTTGATCTTATAATAAGATCAAAGATCACAATTATAGATGCTGTGACAATTTATATAGATCGCATTAGAGGAGATATATTAGAGGAGGAACGTAACATTTGGTTGATAGCTGCGACTCTTGTTGCAACTGCCATCTATCAATCAGGATTGAGTCCCCCTGGTGGAATTTATCAGGTTAGTGCTAGTGACCAAGGTTATCAAAATCGGGACTTTACTTCAAGTCGAAAGGGAGTAGCAAAATCGGGACTCGTAAAATCGCAATCAAAATCGAAGGATTTTACTCAAGGACTTTTGTAGAATCGATGTAGGATAGCAAAGTCGGGACTCGTAAAATCGCAATCAAAATCGAGGATTCTACCAAAACAAGAATAATGTTAAATATATGTTATAAATTGCATATGGTCATAAATGTCTAAAGTTCAAAGTCCAGAAAATACATATACATAAATGTGGGAGATGTGAAGGAATGAAAAATTTTGGCCTTTCGGGTATTTATAGAACGGGTCATGGATTCAAACCGGGTCAATTTACGAACCAGGTCAAAAATTGACCCTTATCAAAAAAATGAACAAAATCCTTCAAAATCCATCAAAATCCTGCGATTTTGAATGGATTTCACGATTTTGTGCGATTTTGATAGGATTTTGCCTGTTTTTGGGACTTTGCTATGGATTTGAGTCGTTGAAGCTACGCAAGGTCGCAAAAACCAGGATTTTGAGACTTAAGTCGGGTTTTTAATAACAATGCTAGTGACACTAACGTGAACATCACTTCCTCCAATTCTACCATTTCTACCCCAGGAAATACTGGGAAATCAGTCTTGTCAGGATATGAATTCTATTGGTTTGTGTATTTTAATATGTATTCCTTTACTGCATCAATTTTAGCGATACTTATTATGATGCCATATGGAATAATAGGCGGTCTAGTGGTTACTCCAATGGGTTCGTTTACCTTAAGTTATATATTTTCTATGTGGAGGATATCCCCTACACATGTCAATTCCGTTATTTTATTCATTGTTTTCGTTTCAAATCTGTTATACCTGGTGATTGAGGTCGTCAATTTTGGAGTGTACTCAAGGCTTAAACACGGAATTGCTAAGATATTGAATATGACAGTCAAAGCATTGTTTCAATAGGAGAAACATCAACAAAGGTTATGGTCGCCGGTCATATAGATGATGGCATGAGGATGATGACTACTAAGATCTTTGCAACTCAAACCACTTCTGGTCGAATTCAAAACCAATAA

Protein sequence

>MS.gene99588.t1

MDTIINGDRLKAAAEAGDVDLLYTVIQDAPYILEHIDSIPFVETPLHIAASMGHLDFAIETMNLKPSFALKLDPQGFSPIHLAMQNNQELVVYRFVFINKDLVRVKGRKGITPLHYASEIGEVKMLAYFLLLCPESIESMTVRRETALHIAVKNEQFEALQVLVSWLKKNIQRGAQKLEKKILNQRDKARNTILHISALSSDPQALLLLISTGINLNAKNREDKTALDIASTPEIKSILLSVGAKPGTEVTDDCPRFDLIIRSKITIIDAVTIYIDRIRGDILEEERNIWLIAATLVATAIYQSGLSPPGGIYQEILGNQSCQDMNSIGGLVVTPMGETSTKVMVAGHIDDGMRMMTTKIFATQTTSGRIQNQ