Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99588.t1 | AES77856.1 | 62.8 | 347 | 112 | 4 | 6 | 348 | 5 | 338 | 1.60E-108 | 402.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99588.t1 | Q8GYH5 | 25.7 | 303 | 215 | 4 | 9 | 304 | 4 | 303 | 1.1e-20 | 102.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99588.t1 | G7KSX2 | 62.8 | 347 | 112 | 4 | 6 | 348 | 5 | 338 | 1.2e-108 | 402.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99588.t1 | MTR_8g072510 | 82.132 | 319 | 56 | 1 | 1 | 319 | 1 | 318 | 0.0 | 531 |
MS.gene99588.t1 | MTR_8g039620 | 68.358 | 335 | 101 | 3 | 4 | 335 | 8 | 340 | 1.22e-154 | 442 |
MS.gene99588.t1 | MTR_3g016210 | 61.813 | 364 | 123 | 4 | 1 | 350 | 1 | 362 | 5.90e-149 | 428 |
MS.gene99588.t1 | MTR_7g021090 | 62.824 | 347 | 112 | 4 | 6 | 348 | 5 | 338 | 6.91e-148 | 424 |
MS.gene99588.t1 | MTR_1g059930 | 67.197 | 314 | 102 | 1 | 8 | 321 | 10 | 322 | 9.64e-148 | 425 |
MS.gene99588.t1 | MTR_8g062410 | 65.774 | 336 | 106 | 3 | 1 | 335 | 1 | 328 | 4.81e-147 | 424 |
MS.gene99588.t1 | MTR_7g451420 | 66.019 | 309 | 104 | 1 | 6 | 314 | 5 | 312 | 4.81e-140 | 401 |
MS.gene99588.t1 | MTR_8g073260 | 62.540 | 315 | 116 | 2 | 1 | 314 | 1 | 314 | 3.68e-139 | 404 |
MS.gene99588.t1 | MTR_8g068990 | 63.722 | 317 | 95 | 5 | 2 | 314 | 4 | 304 | 1.22e-135 | 395 |
MS.gene99588.t1 | MTR_8g069880 | 59.064 | 342 | 131 | 6 | 6 | 344 | 3 | 338 | 8.23e-126 | 370 |
MS.gene99588.t1 | MTR_8g467780 | 58.841 | 328 | 121 | 4 | 9 | 326 | 10 | 333 | 3.16e-124 | 366 |
MS.gene99588.t1 | MTR_8g040930 | 65.038 | 266 | 89 | 2 | 52 | 314 | 1 | 265 | 1.06e-117 | 346 |
MS.gene99588.t1 | MTR_8g041240 | 65.038 | 266 | 89 | 2 | 52 | 314 | 1 | 265 | 1.06e-117 | 346 |
MS.gene99588.t1 | MTR_8g066670 | 60.000 | 310 | 121 | 3 | 6 | 314 | 1071 | 1378 | 6.44e-114 | 362 |
MS.gene99588.t1 | MTR_3g105650 | 43.947 | 380 | 192 | 4 | 8 | 368 | 3 | 380 | 4.32e-99 | 300 |
MS.gene99588.t1 | MTR_8g073275 | 43.363 | 339 | 118 | 6 | 52 | 327 | 1 | 328 | 1.60e-79 | 251 |
MS.gene99588.t1 | MTR_1g069110 | 26.954 | 371 | 215 | 13 | 2 | 357 | 13 | 342 | 9.86e-25 | 105 |
MS.gene99588.t1 | MTR_7g117620 | 31.100 | 209 | 128 | 3 | 45 | 249 | 119 | 315 | 1.97e-18 | 87.0 |
MS.gene99588.t1 | MTR_7g099580 | 24.359 | 312 | 182 | 7 | 10 | 315 | 12 | 275 | 8.25e-18 | 84.0 |
MS.gene99588.t1 | MTR_2g101310 | 28.241 | 216 | 137 | 4 | 41 | 248 | 137 | 342 | 1.68e-16 | 81.3 |
MS.gene99588.t1 | MTR_2g101310 | 28.241 | 216 | 137 | 4 | 41 | 248 | 137 | 342 | 2.45e-16 | 80.9 |
MS.gene99588.t1 | MTR_2g101320 | 27.700 | 213 | 136 | 4 | 41 | 245 | 137 | 339 | 3.04e-16 | 80.5 |
MS.gene99588.t1 | MTR_7g099570 | 28.497 | 193 | 124 | 3 | 10 | 197 | 9 | 192 | 4.67e-16 | 80.1 |
MS.gene99588.t1 | MTR_8g105260 | 27.103 | 214 | 136 | 3 | 45 | 250 | 101 | 302 | 3.87e-14 | 73.9 |
MS.gene99588.t1 | MTR_4g062100 | 24.923 | 325 | 206 | 8 | 10 | 310 | 74 | 384 | 8.22e-14 | 73.2 |
MS.gene99588.t1 | MTR_1g115575 | 25.763 | 295 | 173 | 7 | 45 | 311 | 169 | 445 | 1.67e-13 | 72.0 |
MS.gene99588.t1 | MTR_1g032100 | 26.168 | 214 | 138 | 3 | 45 | 250 | 94 | 295 | 2.35e-13 | 71.6 |
MS.gene99588.t1 | MTR_2g096190 | 25.620 | 242 | 163 | 4 | 10 | 247 | 70 | 298 | 1.20e-12 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99588.t1 | AT4G10720 | 41.018 | 334 | 185 | 4 | 9 | 334 | 4 | 333 | 3.62e-80 | 253 |
MS.gene99588.t1 | AT4G10720 | 41.212 | 330 | 182 | 4 | 9 | 330 | 4 | 329 | 4.92e-80 | 251 |
MS.gene99588.t1 | AT1G14500 | 39.683 | 315 | 182 | 3 | 9 | 315 | 4 | 318 | 4.23e-74 | 236 |
MS.gene99588.t1 | AT1G14480 | 39.375 | 320 | 175 | 5 | 9 | 314 | 4 | 318 | 3.39e-73 | 234 |
MS.gene99588.t1 | AT5G15500 | 41.158 | 311 | 174 | 4 | 10 | 312 | 6 | 315 | 1.05e-70 | 228 |
MS.gene99588.t1 | AT5G54620 | 40.065 | 307 | 176 | 3 | 9 | 308 | 4 | 309 | 3.72e-68 | 221 |
MS.gene99588.t1 | AT5G54610 | 37.171 | 304 | 181 | 4 | 9 | 305 | 4 | 304 | 1.10e-62 | 207 |
MS.gene99588.t1 | AT1G14480 | 36.482 | 307 | 159 | 5 | 9 | 314 | 4 | 275 | 1.58e-55 | 187 |
MS.gene99588.t1 | AT5G15500 | 36.667 | 210 | 124 | 4 | 111 | 312 | 1 | 209 | 1.78e-29 | 117 |
MS.gene99588.t1 | AT5G51160 | 27.946 | 297 | 181 | 5 | 42 | 315 | 13 | 299 | 2.98e-27 | 112 |
MS.gene99588.t1 | AT2G01680 | 28.436 | 211 | 131 | 3 | 45 | 247 | 97 | 295 | 2.43e-16 | 80.9 |
MS.gene99588.t1 | AT4G03460 | 29.279 | 222 | 121 | 5 | 101 | 311 | 290 | 486 | 3.92e-16 | 80.5 |
MS.gene99588.t1 | AT4G03460 | 29.279 | 222 | 121 | 5 | 101 | 311 | 258 | 454 | 4.87e-16 | 80.1 |
MS.gene99588.t1 | AT1G34050 | 25.407 | 307 | 201 | 7 | 23 | 315 | 132 | 424 | 6.49e-16 | 79.7 |
MS.gene99588.t1 | AT1G07710 | 28.400 | 250 | 162 | 4 | 10 | 255 | 70 | 306 | 4.26e-15 | 77.0 |
MS.gene99588.t1 | AT1G07710 | 28.400 | 250 | 162 | 4 | 10 | 255 | 70 | 306 | 4.26e-15 | 77.0 |
MS.gene99588.t1 | AT4G03500 | 28.000 | 225 | 125 | 6 | 99 | 311 | 303 | 502 | 7.69e-15 | 76.6 |
MS.gene99588.t1 | AT4G03500 | 28.000 | 225 | 125 | 6 | 99 | 311 | 280 | 479 | 8.23e-15 | 76.3 |
MS.gene99588.t1 | AT4G03500 | 28.000 | 225 | 125 | 6 | 99 | 311 | 280 | 479 | 8.23e-15 | 76.3 |
MS.gene99588.t1 | AT5G54700 | 27.854 | 219 | 117 | 6 | 102 | 315 | 23 | 205 | 1.88e-14 | 74.3 |
MS.gene99588.t1 | AT1G03670 | 27.928 | 222 | 121 | 6 | 102 | 311 | 279 | 473 | 3.61e-13 | 71.2 |
MS.gene99588.t1 | AT1G05640 | 25.939 | 293 | 181 | 8 | 45 | 315 | 191 | 469 | 4.22e-13 | 71.2 |
MS.gene99588.t1 | AT3G12360 | 26.280 | 293 | 174 | 8 | 45 | 311 | 167 | 443 | 2.18e-12 | 68.9 |
MS.gene99588.t1 | AT3G12360 | 26.280 | 293 | 174 | 8 | 45 | 311 | 155 | 431 | 2.31e-12 | 68.6 |
MS.gene99588.t1 | AT4G03450 | 26.923 | 208 | 134 | 5 | 110 | 312 | 291 | 485 | 3.64e-12 | 68.2 |
MS.gene99588.t1 | AT4G03450 | 26.923 | 208 | 134 | 5 | 110 | 312 | 291 | 485 | 3.67e-12 | 68.2 |
MS.gene99588.t1 | AT5G54710 | 24.910 | 277 | 170 | 9 | 66 | 315 | 187 | 452 | 6.09e-12 | 67.4 |
MS.gene99588.t1 | AT5G54710 | 24.910 | 277 | 170 | 9 | 66 | 315 | 232 | 497 | 6.82e-12 | 67.4 |
MS.gene99588.t1 | AT3G09550 | 25.298 | 336 | 192 | 10 | 10 | 311 | 147 | 457 | 2.06e-11 | 65.9 |
MS.gene99588.t1 | AT3G09550 | 25.298 | 336 | 192 | 10 | 10 | 311 | 147 | 457 | 2.06e-11 | 65.9 |
MS.gene99588.t1 | AT3G09550 | 25.298 | 336 | 192 | 10 | 10 | 311 | 154 | 464 | 2.54e-11 | 65.5 |
MS.gene99588.t1 | AT2G31820 | 27.572 | 243 | 139 | 9 | 22 | 244 | 193 | 418 | 5.16e-11 | 64.7 |
Find 75 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGACCTTGTTAGAGTTAA+AGG | 0.117136 | 8.3:-29921521 | MS.gene99588:CDS |
TCAAGATGCTCCATACATTT+TGG | 0.180997 | 8.3:-29921741 | MS.gene99588:CDS |
CAATCGGTCTCCATTAATTA+TGG | 0.211396 | 8.3:+29921811 | None:intergenic |
CTTCATTATGCAAGTGAAAT+TGG | 0.222947 | 8.3:-29921479 | MS.gene99588:CDS |
AACATGGACACCATAATTAA+TGG | 0.291357 | 8.3:-29921821 | MS.gene99588:CDS |
TCTTATTATAAGATCAAATC+TGG | 0.296677 | 8.3:+29920913 | None:intergenic |
ATTTCTACCCCAGGAAATAC+TGG | 0.311728 | 8.3:-29920121 | MS.gene99588:intron |
AGCGATACACCACAAGTTCT+TGG | 0.311803 | 8.3:+29921558 | None:intergenic |
TTTGCAACTCAAACCACTTC+TGG | 0.314695 | 8.3:-29919696 | MS.gene99588:CDS |
GTTCATTCTTAACAGCAATA+TGG | 0.326006 | 8.3:+29921375 | None:intergenic |
TGTCAGGATATGAATTCTAT+TGG | 0.369776 | 8.3:-29920087 | MS.gene99588:intron |
ATTTATATAGATCGCATTAG+AGG | 0.376817 | 8.3:-29920860 | MS.gene99588:CDS |
TTTCAAATTCATAGTTTCAA+TGG | 0.382782 | 8.3:+29921646 | None:intergenic |
GTTAGAGTTAAAGGCAGAAA+AGG | 0.386512 | 8.3:-29921512 | MS.gene99588:CDS |
TAAATTTGAACGCAAAGAAT+AGG | 0.392595 | 8.3:-29921036 | MS.gene99588:CDS |
TTTACATATTGCTGCATCCA+TGG | 0.394377 | 8.3:-29921684 | MS.gene99588:CDS |
GTCATGGATTCAATGGATTC+CGG | 0.416684 | 8.3:+29921419 | None:intergenic |
CTCTTCAAGTACTTGTTAGC+TGG | 0.417708 | 8.3:-29921343 | MS.gene99588:CDS |
TGTTAAGAATGAACAATTTG+AGG | 0.419354 | 8.3:-29921366 | MS.gene99588:CDS |
TAGTGCTGAAATATGCAAAA+TGG | 0.420503 | 8.3:+29921244 | None:intergenic |
TAGAGGAGGAACGTAACATT+TGG | 0.427395 | 8.3:-29920829 | MS.gene99588:CDS |
AGAAACATCAACAAAGGTTA+TGG | 0.427437 | 8.3:-29919766 | MS.gene99588:CDS |
TCTATATGCTCCAAAATGTA+TGG | 0.431564 | 8.3:+29921731 | None:intergenic |
AATATTAAACCAAAGGGATA+AGG | 0.439552 | 8.3:-29921276 | MS.gene99588:CDS |
TGTAAAGGAGTTTCAACAAA+TGG | 0.448723 | 8.3:+29921701 | None:intergenic |
CGGTCTAGTGGTTACTCCAA+TGG | 0.449788 | 8.3:-29919987 | MS.gene99588:CDS |
TCTAGTTTCAAAGCAAATGA+AGG | 0.453815 | 8.3:+29921623 | None:intergenic |
CTTCAGCTGCAGCTTTCAAT+CGG | 0.457238 | 8.3:+29921795 | None:intergenic |
ACAGAGAGGGGCTCAAAAGC+TGG | 0.457479 | 8.3:-29921306 | MS.gene99588:CDS |
CCTCACAGTCATGGATTCAA+TGG | 0.461294 | 8.3:+29921412 | None:intergenic |
TGTTGCGTGCCTTATCCCTT+TGG | 0.461518 | 8.3:+29921267 | None:intergenic |
GCAACTGCCATCTATCAATC+AGG | 0.470824 | 8.3:-29920785 | MS.gene99588:CDS |
GGTCTAGTGGTTACTCCAAT+GGG | 0.477772 | 8.3:-29919986 | MS.gene99588:intron |
ACTGGGAAATCAGTCTTGTC+AGG | 0.480027 | 8.3:-29920103 | MS.gene99588:CDS |
ACTCAATCCTGATTGATAGA+TGG | 0.480622 | 8.3:+29920778 | None:intergenic |
TTGAAAGCTGCAGCTGAAGC+AGG | 0.480701 | 8.3:-29921791 | MS.gene99588:CDS |
CTTCTATTGCTGATAAGTAC+TGG | 0.494882 | 8.3:-29921061 | MS.gene99588:CDS |
AATAATATACTCTTGATCTC+TGG | 0.495445 | 8.3:+29920980 | None:intergenic |
AAATTTGAACGCAAAGAATA+GGG | 0.497933 | 8.3:-29921035 | MS.gene99588:CDS |
CAATGGATTCCGGACACAAA+AGG | 0.503714 | 8.3:+29921429 | None:intergenic |
AAAGAAAATATTAAACCAAA+GGG | 0.511156 | 8.3:-29921282 | MS.gene99588:CDS |
TTAGAGTTAAAGGCAGAAAA+GGG | 0.511640 | 8.3:-29921511 | MS.gene99588:CDS |
TTAAGTGTTGGAGCAAAACC+TGG | 0.512657 | 8.3:-29920959 | MS.gene99588:CDS |
CATTAGAGGAGATATATTAG+AGG | 0.516069 | 8.3:-29920846 | MS.gene99588:CDS |
TCATCAGTGACTTCTGTGCC+AGG | 0.522148 | 8.3:+29920941 | None:intergenic |
TTACATATTGCTGCATCCAT+GGG | 0.527095 | 8.3:-29921683 | MS.gene99588:CDS |
AAGAGTATATTATTAAGTGT+TGG | 0.527914 | 8.3:-29920971 | MS.gene99588:CDS |
GGCAAAATCGAGATGACCCA+TGG | 0.542500 | 8.3:+29921667 | None:intergenic |
CATGCCATCATCTATATGAC+CGG | 0.546608 | 8.3:+29919740 | None:intergenic |
GCAAAATAACCAAGAACTTG+TGG | 0.556937 | 8.3:-29921567 | MS.gene99588:CDS |
TCAACAAAGGTTATGGTCGC+CGG | 0.560307 | 8.3:-29919759 | MS.gene99588:CDS |
AAAAGAAAATATTAAACCAA+AGG | 0.562607 | 8.3:-29921283 | MS.gene99588:CDS |
ATTTCACTTGCATAATGAAG+AGG | 0.565575 | 8.3:+29921482 | None:intergenic |
AGCACTAAGCAGTGACCCGC+AGG | 0.569895 | 8.3:-29921228 | MS.gene99588:intron |
ATGGATGCAGCAATATGTAA+AGG | 0.578412 | 8.3:+29921686 | None:intergenic |
TTTGCATTGCGAGATGGATG+GGG | 0.578706 | 8.3:+29921585 | None:intergenic |
GTCGCCGGTCATATAGATGA+TGG | 0.579073 | 8.3:-29919744 | MS.gene99588:CDS |
TTCTGCCTTTAACTCTAACA+AGG | 0.584572 | 8.3:+29921516 | None:intergenic |
CTTATTATAAGATCAAATCT+GGG | 0.586962 | 8.3:+29920914 | None:intergenic |
CATCTTGAATTACTGTGTAG+AGG | 0.592515 | 8.3:+29921756 | None:intergenic |
CTAACCTGATAAATTCCACC+AGG | 0.595881 | 8.3:+29920752 | None:intergenic |
TGGAATAATAGGCGGTCTAG+TGG | 0.598901 | 8.3:-29919999 | MS.gene99588:intron |
AATAGGAGAAACATCAACAA+AGG | 0.602509 | 8.3:-29919772 | MS.gene99588:intron |
AGTCTCGCGCCTCACAGTCA+TGG | 0.604154 | 8.3:+29921403 | None:intergenic |
TTTCTACCCCAGGAAATACT+GGG | 0.621052 | 8.3:-29920120 | MS.gene99588:intron |
TTATGCAAGTGAAATTGGTG+AGG | 0.624400 | 8.3:-29921474 | MS.gene99588:CDS |
TAGAGGAGATATATTAGAGG+AGG | 0.635544 | 8.3:-29920843 | MS.gene99588:CDS |
GTCATATAGATGATGGCATG+AGG | 0.659425 | 8.3:-29919737 | MS.gene99588:CDS |
TGGATGGGGCTGAATCCTTG+CGG | 0.668802 | 8.3:+29921599 | None:intergenic |
TTTGAACGCAAAGAATAGGG+AGG | 0.686776 | 8.3:-29921032 | MS.gene99588:CDS |
AACCTGATAAATTCCACCAG+GGG | 0.693447 | 8.3:+29920754 | None:intergenic |
TAACCTGATAAATTCCACCA+GGG | 0.695982 | 8.3:+29920753 | None:intergenic |
CCATTGAATCCATGACTGTG+AGG | 0.701221 | 8.3:-29921412 | MS.gene99588:CDS |
ACCTGATAAATTCCACCAGG+GGG | 0.706697 | 8.3:+29920755 | None:intergenic |
GCTTTGAAACTAGATCCGCA+AGG | 0.724051 | 8.3:-29921614 | MS.gene99588:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGAAAATATTAAACCAA+AGG | - | chr8.3:29920212-29920231 | MS.gene99588:intron | 15.0% |
!! | AAAATACATATACATAAATG+TGG | - | chr8.3:29921017-29921036 | MS.gene99588:CDS | 15.0% |
!! | AAAGAAAATATTAAACCAAA+GGG | - | chr8.3:29920213-29920232 | MS.gene99588:intron | 15.0% |
!! | AAATACATATACATAAATGT+GGG | - | chr8.3:29921018-29921037 | MS.gene99588:CDS | 15.0% |
!! | CATAGAAAATATATAACTTA+AGG | + | chr8.3:29921543-29921562 | None:intergenic | 15.0% |
!! | GAAAACAATGAATAAAATAA+CGG | + | chr8.3:29921594-29921613 | None:intergenic | 15.0% |
!! | TATATGTTATAAATTGCATA+TGG | - | chr8.3:29920966-29920985 | MS.gene99588:CDS | 15.0% |
!! | TGTATTATTCATTAATTTCT+TGG | - | chr8.3:29920400-29920419 | MS.gene99588:intron | 15.0% |
!!! | ATTTAACATTATTCTTGTTT+TGG | + | chr8.3:29920947-29920966 | None:intergenic | 15.0% |
!!! | ATTTATGTATATGTATTTTC+TGG | + | chr8.3:29921016-29921035 | None:intergenic | 15.0% |
!!! | TAAGTTATATATTTTCTATG+TGG | - | chr8.3:29921543-29921562 | MS.gene99588:CDS | 15.0% |
!!! | TCTATATCTTATTTATAAGT+TGG | + | chr8.3:29920352-29920371 | None:intergenic | 15.0% |
!!! | TTTGTTCATTTTTTTGATAA+GGG | + | chr8.3:29921140-29921159 | None:intergenic | 15.0% |
!!! | TTTTGTTCATTTTTTTGATA+AGG | + | chr8.3:29921141-29921160 | None:intergenic | 15.0% |
!! | CTTATTATAAGATCAAATCT+GGG | + | chr8.3:29920584-29920603 | None:intergenic | 20.0% |
!! | TCTTATTATAAGATCAAATC+TGG | + | chr8.3:29920585-29920604 | None:intergenic | 20.0% |
!! | TTTCAAATTCATAGTTTCAA+TGG | + | chr8.3:29919852-29919871 | None:intergenic | 20.0% |
!!! | AAGAGTATATTATTAAGTGT+TGG | - | chr8.3:29920524-29920543 | MS.gene99588:intron | 20.0% |
!!! | ATCTTATTTATAAGTTGGTA+GGG | + | chr8.3:29920347-29920366 | None:intergenic | 20.0% |
!!! | GAAATATGTGATTTTAGTAA+TGG | + | chr8.3:29920309-29920328 | None:intergenic | 20.0% |
!!! | TATCTTATTTATAAGTTGGT+AGG | + | chr8.3:29920348-29920367 | None:intergenic | 20.0% |
! | AAATTTGAACGCAAAGAATA+GGG | - | chr8.3:29920460-29920479 | MS.gene99588:intron | 25.0% |
! | AATAATATACTCTTGATCTC+TGG | + | chr8.3:29920518-29920537 | None:intergenic | 25.0% |
! | AATATTAAACCAAAGGGATA+AGG | - | chr8.3:29920219-29920238 | MS.gene99588:intron | 25.0% |
! | ATACTTATTATGATGCCATA+TGG | - | chr8.3:29921476-29921495 | MS.gene99588:CDS | 25.0% |
! | ATTTATATAGATCGCATTAG+AGG | - | chr8.3:29920635-29920654 | MS.gene99588:intron | 25.0% |
! | TAAATTTGAACGCAAAGAAT+AGG | - | chr8.3:29920459-29920478 | MS.gene99588:intron | 25.0% |
! | TCAAGAAAAATATACAGAGA+GGG | - | chr8.3:29920176-29920195 | MS.gene99588:intron | 25.0% |
! | TGTTAAGAATGAACAATTTG+AGG | - | chr8.3:29920129-29920148 | MS.gene99588:intron | 25.0% |
!! | GTTATATATTTTCTATGTGG+AGG | - | chr8.3:29921546-29921565 | MS.gene99588:CDS | 25.0% |
!! | TGTGAAGGAATGAAAAATTT+TGG | - | chr8.3:29921044-29921063 | MS.gene99588:CDS | 25.0% |
!!! | AATGAAAAATTTTGGCCTTT+CGG | - | chr8.3:29921052-29921071 | MS.gene99588:CDS | 25.0% |
!!! | TCTTATTTATAAGTTGGTAG+GGG | + | chr8.3:29920346-29920365 | None:intergenic | 25.0% |
AAAATCGCAATCAAAATCGA+AGG | - | chr8.3:29920838-29920857 | MS.gene99588:CDS | 30.0% | |
AAAGACCTTGTTAGAGTTAA+AGG | - | chr8.3:29919974-29919993 | MS.gene99588:intron | 30.0% | |
AATAGGAGAAACATCAACAA+AGG | - | chr8.3:29921723-29921742 | MS.gene99588:CDS | 30.0% | |
AGAAACATCAACAAAGGTTA+TGG | - | chr8.3:29921729-29921748 | MS.gene99588:CDS | 30.0% | |
ATGATGCCATATGGAATAAT+AGG | - | chr8.3:29921485-29921504 | MS.gene99588:CDS | 30.0% | |
ATTTCACTTGCATAATGAAG+AGG | + | chr8.3:29920016-29920035 | None:intergenic | 30.0% | |
CAAGAAAAATATACAGAGAG+GGG | - | chr8.3:29920177-29920196 | MS.gene99588:intron | 30.0% | |
CATTAGAGGAGATATATTAG+AGG | - | chr8.3:29920649-29920668 | MS.gene99588:intron | 30.0% | |
CTCAAGAAAAATATACAGAG+AGG | - | chr8.3:29920175-29920194 | MS.gene99588:intron | 30.0% | |
CTTCATTATGCAAGTGAAAT+TGG | - | chr8.3:29920016-29920035 | MS.gene99588:intron | 30.0% | |
GTTCATTCTTAACAGCAATA+TGG | + | chr8.3:29920123-29920142 | None:intergenic | 30.0% | |
TAAAATCGCAATCAAAATCG+AGG | - | chr8.3:29920837-29920856 | MS.gene99588:CDS | 30.0% | |
TCTATATGCTCCAAAATGTA+TGG | + | chr8.3:29919767-29919786 | None:intergenic | 30.0% | |
TGTAAAGGAGTTTCAACAAA+TGG | + | chr8.3:29919797-29919816 | None:intergenic | 30.0% | |
TGTCAGGATATGAATTCTAT+TGG | - | chr8.3:29921408-29921427 | MS.gene99588:CDS | 30.0% | |
TTAGAGTTAAAGGCAGAAAA+GGG | - | chr8.3:29919984-29920003 | MS.gene99588:intron | 30.0% | |
! | AAATCGAAGGATTTTACTCA+AGG | - | chr8.3:29920851-29920870 | MS.gene99588:CDS | 30.0% |
! | CATTAATTTCTTGGTAGTAC+AGG | - | chr8.3:29920409-29920428 | MS.gene99588:intron | 30.0% |
! | TAGTGCTGAAATATGCAAAA+TGG | + | chr8.3:29920254-29920273 | None:intergenic | 30.0% |
! | TCTAGTTTCAAAGCAAATGA+AGG | + | chr8.3:29919875-29919894 | None:intergenic | 30.0% |
!! | AGTCAAAGCATTGTTTCAAT+AGG | - | chr8.3:29921706-29921725 | MS.gene99588:CDS | 30.0% |
!! | ATAGGATTTTGCCTGTTTTT+GGG | - | chr8.3:29921223-29921242 | MS.gene99588:intron | 30.0% |
!! | ATGAAAAATTTTGGCCTTTC+GGG | - | chr8.3:29921053-29921072 | MS.gene99588:CDS | 30.0% |
!!! | AGGATTTTGATGGATTTTGA+AGG | + | chr8.3:29921165-29921184 | None:intergenic | 30.0% |
ACAAGAATAAGATTACCTGC+GGG | + | chr8.3:29920285-29920304 | None:intergenic | 35.0% | |
ACTCAATCCTGATTGATAGA+TGG | + | chr8.3:29920720-29920739 | None:intergenic | 35.0% | |
ATGCCATATGGAATAATAGG+CGG | - | chr8.3:29921488-29921507 | MS.gene99588:CDS | 35.0% | |
ATGGATGCAGCAATATGTAA+AGG | + | chr8.3:29919812-29919831 | None:intergenic | 35.0% | |
CAATCGGTCTCCATTAATTA+TGG | + | chr8.3:29919687-29919706 | None:intergenic | 35.0% | |
CACAAGAATAAGATTACCTG+CGG | + | chr8.3:29920286-29920305 | None:intergenic | 35.0% | |
CATCTTGAATTACTGTGTAG+AGG | + | chr8.3:29919742-29919761 | None:intergenic | 35.0% | |
CGCTAAAATTGATGCAGTAA+AGG | + | chr8.3:29921456-29921475 | None:intergenic | 35.0% | |
CGTTTCAAATCTGTTATACC+TGG | - | chr8.3:29921613-29921632 | MS.gene99588:CDS | 35.0% | |
CTTCTATTGCTGATAAGTAC+TGG | - | chr8.3:29920434-29920453 | MS.gene99588:intron | 35.0% | |
GACTTTACTTCAAGTCGAAA+GGG | - | chr8.3:29920794-29920813 | MS.gene99588:CDS | 35.0% | |
GCAAAATAACCAAGAACTTG+TGG | - | chr8.3:29919928-29919947 | MS.gene99588:intron | 35.0% | |
GTGACCAAGGTTATCAAAAT+CGG | - | chr8.3:29920771-29920790 | MS.gene99588:CDS | 35.0% | |
GTTAGAGTTAAAGGCAGAAA+AGG | - | chr8.3:29919983-29920002 | MS.gene99588:intron | 35.0% | |
TAACCTGATAAATTCCACCA+GGG | + | chr8.3:29920745-29920764 | None:intergenic | 35.0% | |
TAACGGAATTGACATGTGTA+GGG | + | chr8.3:29921577-29921596 | None:intergenic | 35.0% | |
TAGAGGAGATATATTAGAGG+AGG | - | chr8.3:29920652-29920671 | MS.gene99588:intron | 35.0% | |
TGAAATCCATTCAAAATCGC+AGG | + | chr8.3:29921185-29921204 | None:intergenic | 35.0% | |
TGACCAAGGTTATCAAAATC+GGG | - | chr8.3:29920772-29920791 | MS.gene99588:CDS | 35.0% | |
TTACATATTGCTGCATCCAT+GGG | - | chr8.3:29919812-29919831 | MS.gene99588:intron | 35.0% | |
TTATGCAAGTGAAATTGGTG+AGG | - | chr8.3:29920021-29920040 | MS.gene99588:intron | 35.0% | |
TTCTGCCTTTAACTCTAACA+AGG | + | chr8.3:29919982-29920001 | None:intergenic | 35.0% | |
TTTACATATTGCTGCATCCA+TGG | - | chr8.3:29919811-29919830 | MS.gene99588:intron | 35.0% | |
! | ATAACGGAATTGACATGTGT+AGG | + | chr8.3:29921578-29921597 | None:intergenic | 35.0% |
! | ATAAGGGTCAATTTTTGACC+TGG | + | chr8.3:29921124-29921143 | None:intergenic | 35.0% |
! | CAAAATCCTGCGATTTTGAA+TGG | - | chr8.3:29921176-29921195 | MS.gene99588:intron | 35.0% |
! | CCTTTCGGGTATTTATAGAA+CGG | - | chr8.3:29921067-29921086 | MS.gene99588:CDS | 35.0% |
! | CTTTCGGGTATTTATAGAAC+GGG | - | chr8.3:29921068-29921087 | MS.gene99588:intron | 35.0% |
! | GACTTTTGTAGAATCGATGT+AGG | - | chr8.3:29920873-29920892 | MS.gene99588:CDS | 35.0% |
! | GATAGGATTTTGCCTGTTTT+TGG | - | chr8.3:29921222-29921241 | MS.gene99588:intron | 35.0% |
! | TCAAAATCGCAGGATTTTGA+TGG | + | chr8.3:29921175-29921194 | None:intergenic | 35.0% |
! | TCAAGATGCTCCATACATTT+TGG | - | chr8.3:29919754-29919773 | MS.gene99588:CDS | 35.0% |
! | TTACTTTCTCCTTTTGTGTC+CGG | - | chr8.3:29920057-29920076 | MS.gene99588:intron | 35.0% |
!! | ATTTATAAGTTGGTAGGGGA+GGG | + | chr8.3:29920342-29920361 | None:intergenic | 35.0% |
!! | CGATTTTGTGCGATTTTGAT+AGG | - | chr8.3:29921205-29921224 | MS.gene99588:intron | 35.0% |
!! | TATTTATAAGTTGGTAGGGG+AGG | + | chr8.3:29920343-29920362 | None:intergenic | 35.0% |
!!! | AGGATTTTGAGACTTAAGTC+GGG | - | chr8.3:29921295-29921314 | MS.gene99588:CDS | 35.0% |
!!! | CAGGATTTTGAGACTTAAGT+CGG | - | chr8.3:29921294-29921313 | MS.gene99588:CDS | 35.0% |
!!! | TCAATTTTGGAGTGTACTCA+AGG | - | chr8.3:29921648-29921667 | MS.gene99588:CDS | 35.0% |
AACCTGATAAATTCCACCAG+GGG | + | chr8.3:29920744-29920763 | None:intergenic | 40.0% | |
AACGGAATTGACATGTGTAG+GGG | + | chr8.3:29921576-29921595 | None:intergenic | 40.0% | |
AATTCTACCATTTCTACCCC+AGG | - | chr8.3:29921365-29921384 | MS.gene99588:CDS | 40.0% | |
AGACCGCCTATTATTCCATA+TGG | + | chr8.3:29921494-29921513 | None:intergenic | 40.0% | |
AGTATTTCCTGGGGTAGAAA+TGG | + | chr8.3:29921375-29921394 | None:intergenic | 40.0% | |
ATTTCTACCCCAGGAAATAC+TGG | - | chr8.3:29921374-29921393 | MS.gene99588:CDS | 40.0% | |
CATAAATGTGGGAGATGTGA+AGG | - | chr8.3:29921029-29921048 | MS.gene99588:CDS | 40.0% | |
CATAGCAAAGTCCCAAAAAC+AGG | + | chr8.3:29921237-29921256 | None:intergenic | 40.0% | |
CATGCCATCATCTATATGAC+CGG | + | chr8.3:29921758-29921777 | None:intergenic | 40.0% | |
CCGTTCTATAAATACCCGAA+AGG | + | chr8.3:29921070-29921089 | None:intergenic | 40.0% | |
CGACTTAAGTCTCAAAATCC+TGG | + | chr8.3:29921296-29921315 | None:intergenic | 40.0% | |
CTAACCTGATAAATTCCACC+AGG | + | chr8.3:29920746-29920765 | None:intergenic | 40.0% | |
CTGATTTCCCAGTATTTCCT+GGG | + | chr8.3:29921385-29921404 | None:intergenic | 40.0% | |
CTTAAGGTAAACGAACCCAT+TGG | + | chr8.3:29921527-29921546 | None:intergenic | 40.0% | |
GGACTTTACTTCAAGTCGAA+AGG | - | chr8.3:29920793-29920812 | MS.gene99588:CDS | 40.0% | |
GGTAGAAATGGTAGAATTGG+AGG | + | chr8.3:29921363-29921382 | None:intergenic | 40.0% | |
GGTATTTATAGAACGGGTCA+TGG | - | chr8.3:29921074-29921093 | MS.gene99588:intron | 40.0% | |
GTGTACTCAAGGCTTAAACA+CGG | - | chr8.3:29921659-29921678 | MS.gene99588:CDS | 40.0% | |
TAGAGGAGGAACGTAACATT+TGG | - | chr8.3:29920666-29920685 | MS.gene99588:intron | 40.0% | |
TCGAAAGGGAGTAGCAAAAT+CGG | - | chr8.3:29920808-29920827 | MS.gene99588:CDS | 40.0% | |
TCGATGTAGGATAGCAAAGT+CGG | - | chr8.3:29920886-29920905 | MS.gene99588:CDS | 40.0% | |
TCTGTTATACCTGGTGATTG+AGG | - | chr8.3:29921622-29921641 | MS.gene99588:CDS | 40.0% | |
TGATTTCCCAGTATTTCCTG+GGG | + | chr8.3:29921384-29921403 | None:intergenic | 40.0% | |
TGGGGTAGAAATGGTAGAAT+TGG | + | chr8.3:29921366-29921385 | None:intergenic | 40.0% | |
TTTCTACCCCAGGAAATACT+GGG | - | chr8.3:29921375-29921394 | MS.gene99588:CDS | 40.0% | |
TTTGAACGCAAAGAATAGGG+AGG | - | chr8.3:29920463-29920482 | MS.gene99588:intron | 40.0% | |
TTTGCAACTCAAACCACTTC+TGG | - | chr8.3:29921799-29921818 | MS.gene99588:CDS | 40.0% | |
! | ACTGATTTCCCAGTATTTCC+TGG | + | chr8.3:29921386-29921405 | None:intergenic | 40.0% |
! | ATTTTGCATTGCGAGATGGA+TGG | + | chr8.3:29919915-29919934 | None:intergenic | 40.0% |
! | CTCTTCAAGTACTTGTTAGC+TGG | - | chr8.3:29920152-29920171 | MS.gene99588:intron | 40.0% |
! | GTCATATAGATGATGGCATG+AGG | - | chr8.3:29921758-29921777 | MS.gene99588:CDS | 40.0% |
! | GTCATGGATTCAATGGATTC+CGG | + | chr8.3:29920079-29920098 | None:intergenic | 40.0% |
! | GTGATTGAGGTCGTCAATTT+TGG | - | chr8.3:29921635-29921654 | MS.gene99588:CDS | 40.0% |
! | TTTTGCATTGCGAGATGGAT+GGG | + | chr8.3:29919914-29919933 | None:intergenic | 40.0% |
!! | AGTCCCGATTTTGATAACCT+TGG | + | chr8.3:29920778-29920797 | None:intergenic | 40.0% |
!! | GGTTATTTTGCATTGCGAGA+TGG | + | chr8.3:29919919-29919938 | None:intergenic | 40.0% |
!! | GTTTTGAATTCGACCAGAAG+TGG | + | chr8.3:29921815-29921834 | None:intergenic | 40.0% |
!! | TTAAGTGTTGGAGCAAAACC+TGG | - | chr8.3:29920536-29920555 | MS.gene99588:intron | 40.0% |
!! | TTTATAAGTTGGTAGGGGAG+GGG | + | chr8.3:29920341-29920360 | None:intergenic | 40.0% |
!!! | CTGTTTTTGGGACTTTGCTA+TGG | - | chr8.3:29921235-29921254 | MS.gene99588:CDS | 40.0% |
AACGGGTCATGGATTCAAAC+CGG | - | chr8.3:29921085-29921104 | MS.gene99588:intron | 45.0% | |
AATTGACGACCTCAATCACC+AGG | + | chr8.3:29921634-29921653 | None:intergenic | 45.0% | |
ACCTGATAAATTCCACCAGG+GGG | + | chr8.3:29920743-29920762 | None:intergenic | 45.0% | |
AGCGATACACCACAAGTTCT+TGG | + | chr8.3:29919940-29919959 | None:intergenic | 45.0% | |
CCATTGAATCCATGACTGTG+AGG | - | chr8.3:29920083-29920102 | MS.gene99588:intron | 45.0% | |
CCTCACAGTCATGGATTCAA+TGG | + | chr8.3:29920086-29920105 | None:intergenic | 45.0% | |
CGAAAGGGAGTAGCAAAATC+GGG | - | chr8.3:29920809-29920828 | MS.gene99588:CDS | 45.0% | |
CGATGTAGGATAGCAAAGTC+GGG | - | chr8.3:29920887-29920906 | MS.gene99588:CDS | 45.0% | |
CTTCAGCTGCAGCTTTCAAT+CGG | + | chr8.3:29919703-29919722 | None:intergenic | 45.0% | |
GCAACTGCCATCTATCAATC+AGG | - | chr8.3:29920710-29920729 | MS.gene99588:intron | 45.0% | |
GGTCTAGTGGTTACTCCAAT+GGG | - | chr8.3:29921509-29921528 | MS.gene99588:CDS | 45.0% | |
TCAACAAAGGTTATGGTCGC+CGG | - | chr8.3:29921736-29921755 | MS.gene99588:CDS | 45.0% | |
TGGAATAATAGGCGGTCTAG+TGG | - | chr8.3:29921496-29921515 | MS.gene99588:CDS | 45.0% | |
TTTGCATTGCGAGATGGATG+GGG | + | chr8.3:29919913-29919932 | None:intergenic | 45.0% | |
! | ACCTGGTTCGTAAATTGACC+CGG | + | chr8.3:29921107-29921126 | None:intergenic | 45.0% |
! | ACTGGGAAATCAGTCTTGTC+AGG | - | chr8.3:29921392-29921411 | MS.gene99588:CDS | 45.0% |
! | CAATGGATTCCGGACACAAA+AGG | + | chr8.3:29920069-29920088 | None:intergenic | 45.0% |
!! | GCTTTGAAACTAGATCCGCA+AGG | - | chr8.3:29919881-29919900 | MS.gene99588:intron | 45.0% |
ACCGGGTCAATTTACGAACC+AGG | - | chr8.3:29921103-29921122 | MS.gene99588:intron | 50.0% | |
ACGGGTCATGGATTCAAACC+GGG | - | chr8.3:29921086-29921105 | MS.gene99588:intron | 50.0% | |
CAGGTTAGTGCTAGTGACCA+AGG | - | chr8.3:29920758-29920777 | MS.gene99588:CDS | 50.0% | |
CGGTCTAGTGGTTACTCCAA+TGG | - | chr8.3:29921508-29921527 | MS.gene99588:CDS | 50.0% | |
GGCAAAATCGAGATGACCCA+TGG | + | chr8.3:29919831-29919850 | None:intergenic | 50.0% | |
GTCGCCGGTCATATAGATGA+TGG | - | chr8.3:29921751-29921770 | MS.gene99588:CDS | 50.0% | |
TACGCAAGGTCGCAAAAACC+AGG | - | chr8.3:29921275-29921294 | MS.gene99588:CDS | 50.0% | |
TCATCAGTGACTTCTGTGCC+AGG | + | chr8.3:29920557-29920576 | None:intergenic | 50.0% | |
TCCCCCTGGTGGAATTTATC+AGG | - | chr8.3:29920739-29920758 | MS.gene99588:intron | 50.0% | |
TGAGTCGTTGAAGCTACGCA+AGG | - | chr8.3:29921261-29921280 | MS.gene99588:CDS | 50.0% | |
TGTTGCGTGCCTTATCCCTT+TGG | + | chr8.3:29920231-29920250 | None:intergenic | 50.0% | |
TTGAAAGCTGCAGCTGAAGC+AGG | - | chr8.3:29919704-29919723 | MS.gene99588:CDS | 50.0% | |
ACAGAGAGGGGCTCAAAAGC+TGG | - | chr8.3:29920189-29920208 | MS.gene99588:intron | 55.0% | |
CAATCAGGATTGAGTCCCCC+TGG | - | chr8.3:29920725-29920744 | MS.gene99588:intron | 55.0% | |
TGGATGGGGCTGAATCCTTG+CGG | + | chr8.3:29919899-29919918 | None:intergenic | 55.0% | |
!! | ATAAGTTGGTAGGGGAGGGG+AGG | + | chr8.3:29920338-29920357 | None:intergenic | 55.0% |
AGCACTAAGCAGTGACCCGC+AGG | - | chr8.3:29920267-29920286 | MS.gene99588:intron | 60.0% | |
AGTCTCGCGCCTCACAGTCA+TGG | + | chr8.3:29920095-29920114 | None:intergenic | 60.0% | |
TCAGGATTGAGTCCCCCTGG+TGG | - | chr8.3:29920728-29920747 | MS.gene99588:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 29919677 | 29921840 | 29919677 | ID=MS.gene99588 |
chr8.3 | mRNA | 29919677 | 29921840 | 29919677 | ID=MS.gene99588.t1;Parent=MS.gene99588 |
chr8.3 | exon | 29921229 | 29921840 | 29921229 | ID=MS.gene99588.t1.exon1;Parent=MS.gene99588.t1 |
chr8.3 | CDS | 29921229 | 29921840 | 29921229 | ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1 |
chr8.3 | exon | 29920757 | 29921086 | 29920757 | ID=MS.gene99588.t1.exon2;Parent=MS.gene99588.t1 |
chr8.3 | CDS | 29920757 | 29921086 | 29920757 | ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1 |
chr8.3 | exon | 29920088 | 29920130 | 29920088 | ID=MS.gene99588.t1.exon3;Parent=MS.gene99588.t1 |
chr8.3 | CDS | 29920088 | 29920130 | 29920088 | ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1 |
chr8.3 | exon | 29919987 | 29920010 | 29919987 | ID=MS.gene99588.t1.exon4;Parent=MS.gene99588.t1 |
chr8.3 | CDS | 29919987 | 29920010 | 29919987 | ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1 |
chr8.3 | exon | 29919677 | 29919789 | 29919677 | ID=MS.gene99588.t1.exon5;Parent=MS.gene99588.t1 |
chr8.3 | CDS | 29919677 | 29919789 | 29919677 | ID=cds.MS.gene99588.t1;Parent=MS.gene99588.t1 |
Gene Sequence |
Protein sequence |