Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021152.01.T01 | XP_013456312.1 | 98.155 | 271 | 5 | 0 | 1 | 271 | 1 | 271 | 0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021152.01.T01 | Q9M1B5 | 80.074 | 271 | 52 | 1 | 1 | 271 | 1 | 269 | 1.17E-156 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021152.01.T01 | A0A072UMR9 | 98.155 | 271 | 5 | 0 | 1 | 271 | 1 | 271 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0480021152.01 | 0.800144 | 1.653864e-48 | 7.643608e-46 |
| MsG0080048058.01 | MsG0480021152.01 | 0.862858 | 3.762967e-64 | 1.118325e-60 |
| MsG0180000001.01 | MsG0480021152.01 | 0.843406 | 1.429306e-58 | 2.234202e-55 |
| MsG0180000101.01 | MsG0480021152.01 | 0.825267 | 5.146013e-54 | 4.667796e-51 |
| MsG0180000144.01 | MsG0480021152.01 | 0.805392 | 1.364876e-49 | 7.212255e-47 |
| MsG0180000494.01 | MsG0480021152.01 | 0.804760 | 1.850357e-49 | 9.620535e-47 |
| MsG0180000555.01 | MsG0480021152.01 | 0.834889 | 2.308422e-56 | 2.776610e-53 |
| MsG0180000741.01 | MsG0480021152.01 | 0.824123 | 9.571060e-54 | 8.401698e-51 |
| MsG0180001173.01 | MsG0480021152.01 | 0.822904 | 1.845505e-53 | 1.565308e-50 |
| MsG0180001566.01 | MsG0480021152.01 | 0.831074 | 2.051131e-55 | 2.201963e-52 |
| MsG0180001662.01 | MsG0480021152.01 | 0.805928 | 1.053457e-49 | 5.643972e-47 |
| MsG0180001911.01 | MsG0480021152.01 | 0.821656 | 3.595732e-53 | 2.943267e-50 |
| MsG0180003031.01 | MsG0480021152.01 | 0.835886 | 1.291995e-56 | 1.601271e-53 |
| MsG0180003303.01 | MsG0480021152.01 | 0.820011 | 8.592057e-53 | 6.718723e-50 |
| MsG0180003444.01 | MsG0480021152.01 | 0.815667 | 8.219970e-52 | 5.703032e-49 |
| MsG0180003744.01 | MsG0480021152.01 | 0.817770 | 2.774918e-52 | 2.039405e-49 |
| MsG0180003807.01 | MsG0480021152.01 | 0.821291 | 4.366439e-53 | 3.537735e-50 |
| MsG0180003977.01 | MsG0480021152.01 | 0.803049 | 4.196866e-49 | 2.087986e-46 |
| MsG0180004008.01 | MsG0480021152.01 | 0.814919 | 1.205501e-51 | 8.194007e-49 |
| MsG0180004437.01 | MsG0480021152.01 | 0.818747 | 1.668435e-52 | 1.259558e-49 |
| MsG0180004486.01 | MsG0480021152.01 | 0.819414 | 1.176106e-52 | 9.044350e-50 |
| MsG0180004598.01 | MsG0480021152.01 | 0.824942 | 6.141056e-54 | 5.519227e-51 |
| MsG0180004645.01 | MsG0480021152.01 | 0.833973 | 3.919280e-56 | 4.587240e-53 |
| MsG0180004767.01 | MsG0480021152.01 | 0.805159 | 1.526808e-49 | 8.020052e-47 |
| MsG0180004843.01 | MsG0480021152.01 | 0.830718 | 2.508502e-55 | 2.664799e-52 |
| MsG0180005049.01 | MsG0480021152.01 | 0.807199 | 5.680097e-50 | 3.144141e-47 |
| MsG0180005228.01 | MsG0480021152.01 | 0.806822 | 6.825243e-50 | 3.741256e-47 |
| MsG0180005443.01 | MsG0480021152.01 | 0.827827 | 1.261490e-54 | 1.231671e-51 |
| MsG0180005445.01 | MsG0480021152.01 | 0.814766 | 1.303578e-51 | 8.824113e-49 |
| MsG0180005451.01 | MsG0480021152.01 | 0.850005 | 2.245373e-60 | 4.336466e-57 |
| MsG0180005493.01 | MsG0480021152.01 | 0.852050 | 5.951000e-61 | 1.228263e-57 |
| MsG0180005786.01 | MsG0480021152.01 | 0.828190 | 1.031798e-54 | 1.018207e-51 |
| MsG0180005944.01 | MsG0480021152.01 | 0.814723 | 1.332651e-51 | 9.011044e-49 |
| MsG0180005985.01 | MsG0480021152.01 | 0.800565 | 1.357674e-48 | 6.342058e-46 |
| MsG0180006098.01 | MsG0480021152.01 | 0.828852 | 7.138438e-55 | 7.180619e-52 |
| MsG0180006128.01 | MsG0480021152.01 | 0.824294 | 8.724097e-54 | 7.695108e-51 |
| MsG0280006367.01 | MsG0480021152.01 | 0.809981 | 1.446011e-50 | 8.612995e-48 |
| MsG0280010816.01 | MsG0480021152.01 | 0.813760 | 2.173949e-51 | 1.432097e-48 |
| MsG0280010976.01 | MsG0480021152.01 | 0.811035 | 8.562642e-51 | 5.244478e-48 |
| MsG0280011293.01 | MsG0480021152.01 | 0.809228 | 2.099430e-50 | 1.225777e-47 |
| MsG0380012020.01 | MsG0480021152.01 | 0.817493 | 3.204857e-52 | 2.337514e-49 |
| MsG0380014576.01 | MsG0480021152.01 | 0.815517 | 8.876592e-52 | 6.133547e-49 |
| MsG0480018462.01 | MsG0480021152.01 | 0.825793 | 3.861447e-54 | 3.555611e-51 |
| MsG0480018479.01 | MsG0480021152.01 | 0.806251 | 9.006962e-50 | 4.865676e-47 |
| MsG0480018640.01 | MsG0480021152.01 | 0.800468 | 1.421057e-48 | 6.621645e-46 |
| MsG0480018846.01 | MsG0480021152.01 | 0.814107 | 1.823438e-51 | 1.212532e-48 |
| MsG0480019289.01 | MsG0480021152.01 | 0.817068 | 3.994704e-52 | 2.879859e-49 |
| MsG0480020242.01 | MsG0480021152.01 | 0.805174 | 1.516246e-49 | 7.967649e-47 |
| MsG0480020331.01 | MsG0480021152.01 | 0.856646 | 2.794680e-62 | 6.715706e-59 |
| MsG0480020591.01 | MsG0480021152.01 | 0.814184 | 1.753117e-51 | 1.168266e-48 |
| MsG0480021152.01 | MsG0480021240.01 | 0.804876 | 1.750050e-49 | 9.126832e-47 |
| MsG0480021152.01 | MsG0480021772.01 | 0.806799 | 6.900954e-50 | 3.780480e-47 |
| MsG0480021152.01 | MsG0480021900.01 | 0.836834 | 7.419351e-57 | 9.461589e-54 |
| MsG0480021152.01 | MsG0480022026.01 | 0.820034 | 8.490033e-53 | 6.643276e-50 |
| MsG0480021152.01 | MsG0480022094.01 | 0.824281 | 8.789672e-54 | 7.749975e-51 |
| MsG0480021152.01 | MsG0480022115.01 | 0.837403 | 5.305933e-57 | 6.884380e-54 |
| MsG0480021152.01 | MsG0480022228.01 | 0.839734 | 1.327143e-57 | 1.849351e-54 |
| MsG0480021152.01 | MsG0480022318.01 | 0.833269 | 5.875180e-56 | 6.731723e-53 |
| MsG0480021152.01 | MsG0480022552.01 | 0.809899 | 1.506506e-50 | 8.953440e-48 |
| MsG0480021152.01 | MsG0480022678.01 | 0.802425 | 5.644235e-49 | 2.764040e-46 |
| MsG0480021152.01 | MsG0480022717.01 | 0.824491 | 7.843493e-54 | 6.957892e-51 |
| MsG0480021152.01 | MsG0480022719.01 | 0.806814 | 6.850389e-50 | 3.754346e-47 |
| MsG0480021152.01 | MsG0480023412.01 | 0.819799 | 9.604645e-53 | 7.466460e-50 |
| MsG0480021152.01 | MsG0480023659.01 | 0.800757 | 1.240710e-48 | 5.823888e-46 |
| MsG0480021152.01 | MsG0480023873.01 | 0.813087 | 3.057350e-51 | 1.977460e-48 |
| MsG0480021152.01 | MsG0580024157.01 | 0.810432 | 1.156338e-50 | 6.968815e-48 |
| MsG0480021152.01 | MsG0580024618.01 | 0.828524 | 8.571887e-55 | 8.541538e-52 |
| MsG0480021152.01 | MsG0580024960.01 | 0.818370 | 2.030987e-52 | 1.517534e-49 |
| MsG0480021152.01 | MsG0580025025.01 | 0.812440 | 4.234874e-51 | 2.692991e-48 |
| MsG0480021152.01 | MsG0580029629.01 | 0.810507 | 1.113696e-50 | 6.725482e-48 |
| MsG0480021152.01 | MsG0580029762.01 | 0.807722 | 4.398389e-50 | 2.468058e-47 |
| MsG0480021152.01 | MsG0580030003.01 | 0.837458 | 5.136077e-57 | 6.676035e-54 |
| MsG0480021152.01 | MsG0680030321.01 | 0.808502 | 3.001056e-50 | 1.718839e-47 |
| MsG0480021152.01 | MsG0680030684.01 | 0.836563 | 8.697532e-57 | 1.100101e-53 |
| MsG0480021152.01 | MsG0680031063.01 | 0.800681 | 1.285932e-48 | 6.024528e-46 |
| MsG0480021152.01 | MsG0680031301.01 | 0.817907 | 2.585243e-52 | 1.906995e-49 |
| MsG0480021152.01 | MsG0680031699.01 | 0.802444 | 5.593871e-49 | 2.740600e-46 |
| MsG0480021152.01 | MsG0680032075.01 | 0.819885 | 9.181864e-53 | 7.154448e-50 |
| MsG0480021152.01 | MsG0680034757.01 | 0.857725 | 1.341690e-62 | 3.343517e-59 |
| MsG0480021152.01 | MsG0780036630.01 | 0.801862 | 7.370379e-49 | 3.557906e-46 |
| MsG0480021152.01 | MsG0780036633.01 | 0.810077 | 1.378834e-50 | 8.233108e-48 |
| MsG0480021152.01 | MsG0780036773.01 | 0.834766 | 2.479629e-56 | 2.971269e-53 |
| MsG0480021152.01 | MsG0780036845.01 | 0.816506 | 5.339657e-52 | 3.790454e-49 |
| MsG0480021152.01 | MsG0780037755.01 | 0.807724 | 4.395133e-50 | 2.466336e-47 |
| MsG0480021152.01 | MsG0780037975.01 | 0.820658 | 6.104766e-53 | 4.859602e-50 |
| MsG0480021152.01 | MsG0780038630.01 | 0.802442 | 5.600561e-49 | 2.743690e-46 |
| MsG0480021152.01 | MsG0780039587.01 | 0.804588 | 2.010342e-49 | 1.040533e-46 |
| MsG0480021152.01 | MsG0780039717.01 | 0.843667 | 1.216727e-58 | 1.917591e-55 |
| MsG0480021152.01 | MsG0780039777.01 | 0.840326 | 9.299932e-58 | 1.320046e-54 |
| MsG0480021152.01 | MsG0780039845.01 | 0.809298 | 2.027588e-50 | 1.186039e-47 |
| MsG0480021152.01 | MsG0780040176.01 | 0.806614 | 7.551130e-50 | 4.116907e-47 |
| MsG0480021152.01 | MsG0780040190.01 | 0.803380 | 3.584000e-49 | 1.798294e-46 |
| MsG0480021152.01 | MsG0780040254.01 | 0.814528 | 1.471268e-51 | 9.896431e-49 |
| MsG0480021152.01 | MsG0780040488.01 | 0.804617 | 1.982559e-49 | 1.026910e-46 |
| MsG0480021152.01 | MsG0780040519.01 | 0.826554 | 2.545592e-54 | 2.395088e-51 |
| MsG0480021152.01 | MsG0780040712.01 | 0.819747 | 9.875690e-53 | 7.665455e-50 |
| MsG0480021152.01 | MsG0780040856.01 | 0.802391 | 5.736022e-49 | 2.806552e-46 |
| MsG0480021152.01 | MsG0780041469.01 | 0.824763 | 6.767525e-54 | 6.051317e-51 |
| MsG0480021152.01 | MsG0880042206.01 | 0.837966 | 3.805161e-57 | 5.024069e-54 |
| MsG0480021152.01 | MsG0880042547.01 | 0.803467 | 3.438367e-49 | 1.729130e-46 |
| MsG0480021152.01 | MsG0880042552.01 | 0.800453 | 1.431168e-48 | 6.666329e-46 |
| MsG0480021152.01 | MsG0880042760.01 | 0.817656 | 2.945140e-52 | 2.157627e-49 |
| MsG0480021152.01 | MsG0880042829.01 | 0.807075 | 6.033584e-50 | 3.328937e-47 |
| MsG0480021152.01 | MsG0880043522.01 | 0.830651 | 2.604738e-55 | 2.761421e-52 |
| MsG0480021152.01 | MsG0880043532.01 | 0.803780 | 2.960049e-49 | 1.500629e-46 |
| MsG0480021152.01 | MsG0880044732.01 | 0.801696 | 7.971483e-49 | 3.831604e-46 |
| MsG0480021152.01 | MsG0880044917.01 | 0.807022 | 6.191131e-50 | 3.411254e-47 |
| MsG0480021152.01 | MsG0880045165.01 | 0.814842 | 1.253726e-51 | 8.504445e-49 |
| MsG0480021152.01 | MsG0880045329.01 | 0.810909 | 9.117713e-51 | 5.565812e-48 |
| MsG0480021152.01 | MsG0880045448.01 | 0.824744 | 6.837281e-54 | 6.110452e-51 |
| MsG0480021152.01 | MsG0880046027.01 | 0.840931 | 6.460089e-58 | 9.343425e-55 |
| MsG0480021152.01 | MsG0880046561.01 | 0.800682 | 1.285172e-48 | 6.021131e-46 |
| MsG0480021152.01 | MsG0880046684.01 | 0.834860 | 2.347522e-56 | 2.821245e-53 |
| MsG0380015179.01 | MsG0480021152.01 | 0.810675 | 1.024634e-50 | 6.215608e-48 |
| MsG0380015436.01 | MsG0480021152.01 | 0.818452 | 1.945791e-52 | 1.457232e-49 |
| MsG0380015607.01 | MsG0480021152.01 | 0.806884 | 6.623274e-50 | 3.636320e-47 |
| MsG0380015614.01 | MsG0480021152.01 | 0.800667 | 1.294327e-48 | 6.061916e-46 |
| MsG0380015702.01 | MsG0480021152.01 | 0.835349 | 1.767516e-56 | 2.155854e-53 |
| MsG0380016227.01 | MsG0480021152.01 | 0.804542 | 2.054602e-49 | 1.062171e-46 |
| MsG0380016483.01 | MsG0480021152.01 | 0.805644 | 1.208445e-49 | 6.427287e-47 |
| MsG0380016753.01 | MsG0480021152.01 | 0.803100 | 4.094927e-49 | 2.039905e-46 |
| MsG0380016971.01 | MsG0480021152.01 | 0.819294 | 1.252315e-52 | 9.597772e-50 |
| MsG0380017210.01 | MsG0480021152.01 | 0.813191 | 2.900073e-51 | 1.881066e-48 |
| MsG0380017375.01 | MsG0480021152.01 | 0.810885 | 9.227126e-51 | 5.629094e-48 |
| MsG0380017719.01 | MsG0480021152.01 | 0.837054 | 6.518966e-57 | 8.368846e-54 |
| MsG0480018235.01 | MsG0480021152.01 | 0.807439 | 5.051867e-50 | 2.813872e-47 |
| MsG0280006906.01 | MsG0480021152.01 | 0.805464 | 1.318050e-49 | 6.978059e-47 |
| MsG0280006935.01 | MsG0480021152.01 | 0.815434 | 9.261732e-52 | 6.384985e-49 |
| MsG0280007048.01 | MsG0480021152.01 | 0.818524 | 1.874505e-52 | 1.406486e-49 |
| MsG0280007087.01 | MsG0480021152.01 | 0.810189 | 1.304742e-50 | 7.812945e-48 |
| MsG0280007484.01 | MsG0480021152.01 | 0.816414 | 5.598817e-52 | 3.964517e-49 |
| MsG0280007710.01 | MsG0480021152.01 | 0.822104 | 2.831317e-53 | 2.347212e-50 |
| MsG0280007790.01 | MsG0480021152.01 | 0.807055 | 6.093129e-50 | 3.360146e-47 |
| MsG0280007984.01 | MsG0480021152.01 | 0.806180 | 9.324340e-50 | 5.027970e-47 |
| MsG0280008030.01 | MsG0480021152.01 | 0.805220 | 1.482957e-49 | 7.801620e-47 |
| MsG0280010109.01 | MsG0480021152.01 | 0.820857 | 5.494434e-53 | 4.398639e-50 |
| MsG0280010447.01 | MsG0480021152.01 | 0.825896 | 3.649507e-54 | 3.370353e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021152.01.T01 | MTR_4g067340 | 98.155 | 271 | 5 | 0 | 1 | 271 | 1 | 271 | 0.0 | 532 |
| MsG0480021152.01.T01 | MTR_7g107390 | 27.650 | 217 | 130 | 6 | 15 | 215 | 32 | 237 | 1.26e-11 | 64.3 |
| MsG0480021152.01.T01 | MTR_7g107390 | 27.650 | 217 | 130 | 6 | 15 | 215 | 32 | 237 | 1.51e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021152.01.T01 | AT3G59520 | 80.074 | 271 | 52 | 1 | 1 | 271 | 1 | 269 | 1.19e-157 | 439 |
Find 84 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGAAATTAGAAGTGATTT+TGG | 0.178927 | 4:+54432195 | MsG0480021152.01.T01:exon |
| TTACTGGGCACTTACCTTAT+TGG | 0.205224 | 4:+54432863 | MsG0480021152.01.T01:CDS |
| AGACAAAGATTCAACCTTTC+TGG | 0.216911 | 4:+54431940 | MsG0480021152.01.T01:exon |
| TACTGGGCACTTACCTTATT+GGG | 0.220182 | 4:+54432864 | MsG0480021152.01.T01:CDS |
| AGTTGTTTGCGAAAAGAAAA+TGG | 0.246782 | 4:-54431980 | None:intergenic |
| AAATCAAAACTTTAGCAAAA+AGG | 0.260344 | 4:-54432153 | None:intergenic |
| TCTTCCAAGTTGGAGCTCTT+TGG | 0.276633 | 4:+54432693 | MsG0480021152.01.T01:CDS |
| AGTTTGCATCTTTAGCTATA+TGG | 0.292985 | 4:+54433181 | MsG0480021152.01.T01:exon |
| GGTGGTTGTATCCGGGGTTT+TGG | 0.310982 | 4:+54432548 | MsG0480021152.01.T01:CDS |
| TAGCAATTTGCAGTGCAATT+TGG | 0.322100 | 4:+54432304 | MsG0480021152.01.T01:CDS |
| ACTATGAACAAAATCTATAT+TGG | 0.328084 | 4:-54433137 | None:intergenic |
| GCCTTTGATTTATGAGATCT+TGG | 0.330924 | 4:+54432257 | MsG0480021152.01.T01:CDS |
| CTTGTGTTGGTGGTTGTATC+CGG | 0.344944 | 4:+54432540 | MsG0480021152.01.T01:CDS |
| TTCATGGGATGACTAATTAC+TGG | 0.352877 | 4:+54432847 | MsG0480021152.01.T01:CDS |
| TACTCTCAAATTCAAATTCA+AGG | 0.356862 | 4:-54432081 | None:intergenic |
| GAAAACAGAAATGCAATATC+AGG | 0.360350 | 4:-54433699 | None:intergenic |
| TGAGTGCACTTTGGAGTCTT+GGG | 0.365778 | 4:+54432460 | MsG0480021152.01.T01:CDS |
| TCAAACGGAGCAAAACTAAT+AGG | 0.372282 | 4:-54432729 | None:intergenic |
| GCAGTGTCACTTCGTCAAAT+TGG | 0.372932 | 4:-54433229 | None:intergenic |
| ATAGCTTGGGGTTTGATTCA+TGG | 0.377631 | 4:+54432831 | MsG0480021152.01.T01:CDS |
| TGTTGGATATGCTATAGCTT+GGG | 0.379122 | 4:+54432818 | MsG0480021152.01.T01:CDS |
| AAGAACAATCCAACCCAATA+AGG | 0.380469 | 4:-54432877 | None:intergenic |
| GCTATAATAACACTTGTTGC+TGG | 0.384175 | 4:-54432285 | None:intergenic |
| CTGCAATGGAAGGACAATAT+TGG | 0.389460 | 4:+54432382 | MsG0480021152.01.T01:CDS |
| GTTGATTCAGTTCAACAGTC+TGG | 0.390878 | 4:+54433420 | MsG0480021152.01.T01:exon |
| CACTTCGATTATTGTTCCTC+AGG | 0.392946 | 4:+54432764 | MsG0480021152.01.T01:CDS |
| TGTTATTACCATTTCCTAGT+TGG | 0.395867 | 4:+54433350 | MsG0480021152.01.T01:exon |
| TAGCTTGGGGTTTGATTCAT+GGG | 0.402889 | 4:+54432832 | MsG0480021152.01.T01:CDS |
| CTGGCAATGCACTCATCTGC+AGG | 0.403334 | 4:-54433019 | None:intergenic |
| CATTTATCTGGGATTGTTGT+TGG | 0.403713 | 4:+54432801 | MsG0480021152.01.T01:CDS |
| ATGAGTGCACTTTGGAGTCT+TGG | 0.411154 | 4:+54432459 | MsG0480021152.01.T01:CDS |
| AAATGCAATATCAGGTTTAT+CGG | 0.415626 | 4:-54433691 | None:intergenic |
| TCTACCACACATATTGATAA+AGG | 0.419204 | 4:-54433281 | None:intergenic |
| TCTTGGGGTTGTAGAGCAAT+TGG | 0.420492 | 4:+54432476 | MsG0480021152.01.T01:CDS |
| TTAGTTCTGTAAAATACAAC+TGG | 0.420670 | 4:-54433527 | None:intergenic |
| CTAACTAGACAGGTTTATAA+TGG | 0.423574 | 4:+54433546 | MsG0480021152.01.T01:exon |
| TTGTGTTGGTGGTTGTATCC+GGG | 0.423966 | 4:+54432541 | MsG0480021152.01.T01:CDS |
| GAATTTGAATTTGAGAGTAT+TGG | 0.430363 | 4:+54432085 | MsG0480021152.01.T01:exon |
| CTTGTTGATTCAAAGATTCA+AGG | 0.430998 | 4:+54432587 | MsG0480021152.01.T01:CDS |
| AATCACTGCGTGGTCTGGTT+TGG | 0.431443 | 4:+54433468 | MsG0480021152.01.T01:exon |
| GATCACTGAATGATCTGGTT+TGG | 0.439064 | 4:+54433591 | MsG0480021152.01.T01:exon |
| TTTACAAGCAGCGGAAATCA+TGG | 0.447671 | 4:-54433496 | None:intergenic |
| TTGCGAAAAGAAAATGGATT+GGG | 0.457416 | 4:-54431974 | None:intergenic |
| CATTTGATCACTGAATGATC+TGG | 0.457530 | 4:+54433586 | MsG0480021152.01.T01:exon |
| TACATCAACCAACTAGGAAA+TGG | 0.459061 | 4:-54433358 | None:intergenic |
| AGTGTAATCACTGCGTGGTC+TGG | 0.463104 | 4:+54433463 | MsG0480021152.01.T01:exon |
| TAAGTTTCCTAAAATACTAC+TGG | 0.466477 | 4:-54433650 | None:intergenic |
| GGGCACTTACCTTATTGGGT+TGG | 0.473467 | 4:+54432868 | MsG0480021152.01.T01:CDS |
| TTTACAAACAGTAGAAATCA+TGG | 0.474367 | 4:-54433619 | None:intergenic |
| AATATTGGTTGTTCACATGT+TGG | 0.481817 | 4:+54432345 | MsG0480021152.01.T01:CDS |
| TTTCGTCGAGTGACGGCTGT+TGG | 0.482713 | 4:+54432618 | MsG0480021152.01.T01:CDS |
| GCAGTATACACTTGTGTTGG+TGG | 0.485085 | 4:+54432530 | MsG0480021152.01.T01:CDS |
| TTATGTAACATCGACACAAT+TGG | 0.486901 | 4:+54433086 | MsG0480021152.01.T01:exon |
| TTGTTGGATATGCTATAGCT+TGG | 0.497279 | 4:+54432817 | MsG0480021152.01.T01:CDS |
| ACAATGTCAACATTTCCATC+TGG | 0.497361 | 4:-54433038 | None:intergenic |
| ACTCTCAAATTCAAATTCAA+GGG | 0.498313 | 4:-54432080 | None:intergenic |
| TATTTATACATCAACCAACT+AGG | 0.500048 | 4:-54433364 | None:intergenic |
| AAATCCAAAGAGCTCCAACT+TGG | 0.500176 | 4:-54432697 | None:intergenic |
| GAAGCAACCTTCTTCCAAGT+TGG | 0.503075 | 4:+54432683 | MsG0480021152.01.T01:CDS |
| TCCAAGATCTCATAAATCAA+AGG | 0.505767 | 4:-54432258 | None:intergenic |
| CAATTGGATCATGTTGGCCT+TGG | 0.510981 | 4:+54432492 | MsG0480021152.01.T01:CDS |
| TTTGCGAAAAGAAAATGGAT+TGG | 0.511289 | 4:-54431975 | None:intergenic |
| AATCGCACAGACGGTAATGA+AGG | 0.514515 | 4:-54432972 | None:intergenic |
| AAGAGCTCCAACTTGGAAGA+AGG | 0.537007 | 4:-54432690 | None:intergenic |
| TCATGGGATGACTAATTACT+GGG | 0.568103 | 4:+54432848 | MsG0480021152.01.T01:CDS |
| GTGAAAATAAGCGATTCAAA+CGG | 0.570383 | 4:-54432744 | None:intergenic |
| GTTGGATATGCTATAGCTTG+GGG | 0.574371 | 4:+54432819 | MsG0480021152.01.T01:CDS |
| TACTCCTTTATCAATATGTG+TGG | 0.574653 | 4:+54433277 | MsG0480021152.01.T01:exon |
| GAGTGCACTTTGGAGTCTTG+GGG | 0.582155 | 4:+54432461 | MsG0480021152.01.T01:CDS |
| TTGTCTTCAGAGAACGAAGA+GGG | 0.585392 | 4:-54431923 | None:intergenic |
| AGTTATGAGACTGCAATGGA+AGG | 0.599785 | 4:+54432372 | MsG0480021152.01.T01:CDS |
| CACAGACGGTAATGAAGGAT+CGG | 0.600871 | 4:-54432967 | None:intergenic |
| TGGCAATGCACTCATCTGCA+GGG | 0.609281 | 4:-54433018 | None:intergenic |
| TTTGCAGTATACACTTGTGT+TGG | 0.612877 | 4:+54432527 | MsG0480021152.01.T01:CDS |
| GTTGAATAGTTTACAAGCAG+CGG | 0.613731 | 4:-54433505 | None:intergenic |
| CAGATGAGTGCATTGCCAGA+TGG | 0.613817 | 4:+54433023 | MsG0480021152.01.T01:CDS |
| GTAGAGCAATTGGATCATGT+TGG | 0.632439 | 4:+54432486 | MsG0480021152.01.T01:CDS |
| GCAAATAATACTCGACACCA+AGG | 0.639015 | 4:-54432509 | None:intergenic |
| TGTGTTGGTGGTTGTATCCG+GGG | 0.653479 | 4:+54432542 | MsG0480021152.01.T01:CDS |
| TTTGAGTTATGAGACTGCAA+TGG | 0.660226 | 4:+54432368 | MsG0480021152.01.T01:CDS |
| TTTGTCTTCAGAGAACGAAG+AGG | 0.692534 | 4:-54431924 | None:intergenic |
| TACTGAGTGTAATCACTGCG+TGG | 0.693296 | 4:+54433458 | MsG0480021152.01.T01:exon |
| CATTGCCAGAACCAAAACCC+CGG | 0.701359 | 4:-54432559 | None:intergenic |
| TGTCCAATAAAACTTGCCTG+AGG | 0.704440 | 4:-54432780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCTATATTGGAAAAAT+TGG | - | Chr4:54433131-54433150 | None:intergenic | 15.0% |
| !! | TATATACAGAAGAAAAATAT+TGG | + | Chr4:54432330-54432349 | MsG0480021152.01.T01:CDS | 15.0% |
| !! | AAATCAAAACTTTAGCAAAA+AGG | - | Chr4:54432156-54432175 | None:intergenic | 20.0% |
| !! | AATCAAAACTTTAGCAAAAA+GGG | - | Chr4:54432155-54432174 | None:intergenic | 20.0% |
| !! | ACTATGAACAAAATCTATAT+TGG | - | Chr4:54433140-54433159 | None:intergenic | 20.0% |
| !!! | TAGAAATTAGAAGTGATTTT+GGG | + | Chr4:54432196-54432215 | MsG0480021152.01.T01:exon | 20.0% |
| !!! | TATTTAACCAGTAGTATTTT+AGG | + | Chr4:54433643-54433662 | MsG0480021152.01.T01:exon | 20.0% |
| !!! | TTTGCTAAAGTTTTGATTTT+TGG | + | Chr4:54432157-54432176 | MsG0480021152.01.T01:exon | 20.0% |
| ! | AAATGCAATATCAGGTTTAT+CGG | - | Chr4:54433694-54433713 | None:intergenic | 25.0% |
| ! | ACTCTCAAATTCAAATTCAA+GGG | - | Chr4:54432083-54432102 | None:intergenic | 25.0% |
| ! | CCTTAAAAAACATCATTTGA+TGG | - | Chr4:54433759-54433778 | None:intergenic | 25.0% |
| ! | TAAGTTTCCTAAAATACTAC+TGG | - | Chr4:54433653-54433672 | None:intergenic | 25.0% |
| ! | TACTCTCAAATTCAAATTCA+AGG | - | Chr4:54432084-54432103 | None:intergenic | 25.0% |
| ! | TATTTATACATCAACCAACT+AGG | - | Chr4:54433367-54433386 | None:intergenic | 25.0% |
| ! | TTTACAAACAGTAGAAATCA+TGG | - | Chr4:54433622-54433641 | None:intergenic | 25.0% |
| !! | GAATTTGAATTTGAGAGTAT+TGG | + | Chr4:54432085-54432104 | MsG0480021152.01.T01:exon | 25.0% |
| !! | GTAGAAATTAGAAGTGATTT+TGG | + | Chr4:54432195-54432214 | MsG0480021152.01.T01:exon | 25.0% |
| !!! | AGAAGTGATTTTGAGAAAAT+GGG | + | Chr4:54432231-54432250 | MsG0480021152.01.T01:exon | 25.0% |
| !!! | AGTTTTATTGGACATTTATC+TGG | + | Chr4:54432789-54432808 | MsG0480021152.01.T01:CDS | 25.0% |
| !!! | CAAACAACTTTTTGTTTCTA+TGG | + | Chr4:54431994-54432013 | MsG0480021152.01.T01:exon | 25.0% |
| !!! | CCATCAAATGATGTTTTTTA+AGG | + | Chr4:54433756-54433775 | MsG0480021152.01.T01:exon | 25.0% |
| !!! | GTTTTATTGGACATTTATCT+GGG | + | Chr4:54432790-54432809 | MsG0480021152.01.T01:CDS | 25.0% |
| !!! | TAGAAGTGATTTTGAGAAAA+TGG | + | Chr4:54432230-54432249 | MsG0480021152.01.T01:exon | 25.0% |
| !!! | TTAGTTCTGTAAAATACAAC+TGG | - | Chr4:54433530-54433549 | None:intergenic | 25.0% |
| AGTTGTTTGCGAAAAGAAAA+TGG | - | Chr4:54431983-54432002 | None:intergenic | 30.0% | |
| AGTTTGCATCTTTAGCTATA+TGG | + | Chr4:54433181-54433200 | MsG0480021152.01.T01:exon | 30.0% | |
| CTAACTAGACAGGTTTATAA+TGG | + | Chr4:54433546-54433565 | MsG0480021152.01.T01:exon | 30.0% | |
| GAAAACAGAAATGCAATATC+AGG | - | Chr4:54433702-54433721 | None:intergenic | 30.0% | |
| GTGAAAATAAGCGATTCAAA+CGG | - | Chr4:54432747-54432766 | None:intergenic | 30.0% | |
| TACTCCTTTATCAATATGTG+TGG | + | Chr4:54433277-54433296 | MsG0480021152.01.T01:exon | 30.0% | |
| TCCAAGATCTCATAAATCAA+AGG | - | Chr4:54432261-54432280 | None:intergenic | 30.0% | |
| TCTACCACACATATTGATAA+AGG | - | Chr4:54433284-54433303 | None:intergenic | 30.0% | |
| TGTTATTACCATTTCCTAGT+TGG | + | Chr4:54433350-54433369 | MsG0480021152.01.T01:exon | 30.0% | |
| TTATGTAACATCGACACAAT+TGG | + | Chr4:54433086-54433105 | MsG0480021152.01.T01:exon | 30.0% | |
| TTTGCGAAAAGAAAATGGAT+TGG | - | Chr4:54431978-54431997 | None:intergenic | 30.0% | |
| ! | AATATTGGTTGTTCACATGT+TGG | + | Chr4:54432345-54432364 | MsG0480021152.01.T01:CDS | 30.0% |
| ! | TGCACAAATTTTCGTTTCAT+GGG | + | Chr4:54432028-54432047 | MsG0480021152.01.T01:exon | 30.0% |
| ! | TTCAAATTCAAGGGTTTTTC+TGG | - | Chr4:54432074-54432093 | None:intergenic | 30.0% |
| ! | TTGCGAAAAGAAAATGGATT+GGG | - | Chr4:54431977-54431996 | None:intergenic | 30.0% |
| ! | TTTTACAGAACTAACTAGAC+AGG | + | Chr4:54433536-54433555 | MsG0480021152.01.T01:exon | 30.0% |
| ! | TTTTTAACATGAGTGCACTT+TGG | + | Chr4:54432451-54432470 | MsG0480021152.01.T01:CDS | 30.0% |
| !! | AGAAGTGATTTTGGGAAATT+AGG | + | Chr4:54432204-54432223 | MsG0480021152.01.T01:exon | 30.0% |
| !! | CTTGTTGATTCAAAGATTCA+AGG | + | Chr4:54432587-54432606 | MsG0480021152.01.T01:CDS | 30.0% |
| !!! | CAACTTTTTGTTTCTATGGT+TGG | + | Chr4:54431998-54432017 | MsG0480021152.01.T01:exon | 30.0% |
| !!! | GTTTTGAGTTTGAAGAAATC+TGG | + | Chr4:54432906-54432925 | MsG0480021152.01.T01:CDS | 30.0% |
| !!! | TTTGTTGATGTTGTTTTTGC+TGG | + | Chr4:54433733-54433752 | MsG0480021152.01.T01:exon | 30.0% |
| AAGAACAATCCAACCCAATA+AGG | - | Chr4:54432880-54432899 | None:intergenic | 35.0% | |
| ACAATGTCAACATTTCCATC+TGG | - | Chr4:54433041-54433060 | None:intergenic | 35.0% | |
| AGACAAAGATTCAACCTTTC+TGG | + | Chr4:54431940-54431959 | MsG0480021152.01.T01:exon | 35.0% | |
| CATTTGATCACTGAATGATC+TGG | + | Chr4:54433586-54433605 | MsG0480021152.01.T01:exon | 35.0% | |
| GTTGAATAGTTTACAAGCAG+CGG | - | Chr4:54433508-54433527 | None:intergenic | 35.0% | |
| TACATCAACCAACTAGGAAA+TGG | - | Chr4:54433361-54433380 | None:intergenic | 35.0% | |
| TAGCAATTTGCAGTGCAATT+TGG | + | Chr4:54432304-54432323 | MsG0480021152.01.T01:CDS | 35.0% | |
| TCAAACGGAGCAAAACTAAT+AGG | - | Chr4:54432732-54432751 | None:intergenic | 35.0% | |
| TCATGGGATGACTAATTACT+GGG | + | Chr4:54432848-54432867 | MsG0480021152.01.T01:CDS | 35.0% | |
| TGTTGGATATGCTATAGCTT+GGG | + | Chr4:54432818-54432837 | MsG0480021152.01.T01:CDS | 35.0% | |
| TTCATGGGATGACTAATTAC+TGG | + | Chr4:54432847-54432866 | MsG0480021152.01.T01:CDS | 35.0% | |
| TTGTTGGATATGCTATAGCT+TGG | + | Chr4:54432817-54432836 | MsG0480021152.01.T01:CDS | 35.0% | |
| TTTGCAGTATACACTTGTGT+TGG | + | Chr4:54432527-54432546 | MsG0480021152.01.T01:CDS | 35.0% | |
| ! | CATTTATCTGGGATTGTTGT+TGG | + | Chr4:54432801-54432820 | MsG0480021152.01.T01:CDS | 35.0% |
| ! | CTGCACAAATTTTCGTTTCA+TGG | + | Chr4:54432027-54432046 | MsG0480021152.01.T01:exon | 35.0% |
| ! | GCCTTTGATTTATGAGATCT+TGG | + | Chr4:54432257-54432276 | MsG0480021152.01.T01:CDS | 35.0% |
| ! | GCTATAATAACACTTGTTGC+TGG | - | Chr4:54432288-54432307 | None:intergenic | 35.0% |
| ! | TTTGAGTTATGAGACTGCAA+TGG | + | Chr4:54432368-54432387 | MsG0480021152.01.T01:CDS | 35.0% |
| !!! | ATTCGTGTGTTGTTTTTGGT+TGG | + | Chr4:54432643-54432662 | MsG0480021152.01.T01:CDS | 35.0% |
| !!! | GGTTATTCGTGTGTTGTTTT+TGG | + | Chr4:54432639-54432658 | MsG0480021152.01.T01:CDS | 35.0% |
| AAATCCAAAGAGCTCCAACT+TGG | - | Chr4:54432700-54432719 | None:intergenic | 40.0% | |
| AGTTATGAGACTGCAATGGA+AGG | + | Chr4:54432372-54432391 | MsG0480021152.01.T01:CDS | 40.0% | |
| ATAGCTTGGGGTTTGATTCA+TGG | + | Chr4:54432831-54432850 | MsG0480021152.01.T01:CDS | 40.0% | |
| CACTTCGATTATTGTTCCTC+AGG | + | Chr4:54432764-54432783 | MsG0480021152.01.T01:CDS | 40.0% | |
| CTGCAATGGAAGGACAATAT+TGG | + | Chr4:54432382-54432401 | MsG0480021152.01.T01:CDS | 40.0% | |
| GATCACTGAATGATCTGGTT+TGG | + | Chr4:54433591-54433610 | MsG0480021152.01.T01:exon | 40.0% | |
| GCAAATAATACTCGACACCA+AGG | - | Chr4:54432512-54432531 | None:intergenic | 40.0% | |
| GGGCGAAAAAAATACCAGAA+AGG | - | Chr4:54431957-54431976 | None:intergenic | 40.0% | |
| GTAGAGCAATTGGATCATGT+TGG | + | Chr4:54432486-54432505 | MsG0480021152.01.T01:CDS | 40.0% | |
| GTTGGATATGCTATAGCTTG+GGG | + | Chr4:54432819-54432838 | MsG0480021152.01.T01:CDS | 40.0% | |
| TACTGGGCACTTACCTTATT+GGG | + | Chr4:54432864-54432883 | MsG0480021152.01.T01:CDS | 40.0% | |
| TAGCTTGGGGTTTGATTCAT+GGG | + | Chr4:54432832-54432851 | MsG0480021152.01.T01:CDS | 40.0% | |
| TGTCCAATAAAACTTGCCTG+AGG | - | Chr4:54432783-54432802 | None:intergenic | 40.0% | |
| TTACTGGGCACTTACCTTAT+TGG | + | Chr4:54432863-54432882 | MsG0480021152.01.T01:CDS | 40.0% | |
| TTGTCTTCAGAGAACGAAGA+GGG | - | Chr4:54431926-54431945 | None:intergenic | 40.0% | |
| TTTACAAGCAGCGGAAATCA+TGG | - | Chr4:54433499-54433518 | None:intergenic | 40.0% | |
| TTTGTCTTCAGAGAACGAAG+AGG | - | Chr4:54431927-54431946 | None:intergenic | 40.0% | |
| ! | ATTACCGTCTGTGCGATTTT+TGG | + | Chr4:54432977-54432996 | MsG0480021152.01.T01:CDS | 40.0% |
| ! | GTTGATTCAGTTCAACAGTC+TGG | + | Chr4:54433420-54433439 | MsG0480021152.01.T01:exon | 40.0% |
| ! | TGAGTATTTTCGTCGAGTGA+CGG | + | Chr4:54432611-54432630 | MsG0480021152.01.T01:CDS | 40.0% |
| ! | TTACCGTCTGTGCGATTTTT+GGG | + | Chr4:54432978-54432997 | MsG0480021152.01.T01:CDS | 40.0% |
| !! | GTTCCTCAGGCAAGTTTTAT+TGG | + | Chr4:54432777-54432796 | MsG0480021152.01.T01:CDS | 40.0% |
| !!! | CGATTTTTGGGATCTAGCAA+TGG | + | Chr4:54432990-54433009 | MsG0480021152.01.T01:CDS | 40.0% |
| AAGAGCTCCAACTTGGAAGA+AGG | - | Chr4:54432693-54432712 | None:intergenic | 45.0% | |
| AATCGCACAGACGGTAATGA+AGG | - | Chr4:54432975-54432994 | None:intergenic | 45.0% | |
| CACAGACGGTAATGAAGGAT+CGG | - | Chr4:54432970-54432989 | None:intergenic | 45.0% | |
| GAAGCAACCTTCTTCCAAGT+TGG | + | Chr4:54432683-54432702 | MsG0480021152.01.T01:CDS | 45.0% | |
| GATCCCAAAAATCGCACAGA+CGG | - | Chr4:54432984-54433003 | None:intergenic | 45.0% | |
| GCAGTATACACTTGTGTTGG+TGG | + | Chr4:54432530-54432549 | MsG0480021152.01.T01:CDS | 45.0% | |
| TACTGAGTGTAATCACTGCG+TGG | + | Chr4:54433458-54433477 | MsG0480021152.01.T01:exon | 45.0% | |
| TCTTGGGGTTGTAGAGCAAT+TGG | + | Chr4:54432476-54432495 | MsG0480021152.01.T01:CDS | 45.0% | |
| ! | CAATTGGATCATGTTGGCCT+TGG | + | Chr4:54432492-54432511 | MsG0480021152.01.T01:CDS | 45.0% |
| ! | TCTTCCAAGTTGGAGCTCTT+TGG | + | Chr4:54432693-54432712 | MsG0480021152.01.T01:CDS | 45.0% |
| !! | ATGAGTGCACTTTGGAGTCT+TGG | + | Chr4:54432459-54432478 | MsG0480021152.01.T01:CDS | 45.0% |
| !! | CTTGTGTTGGTGGTTGTATC+CGG | + | Chr4:54432540-54432559 | MsG0480021152.01.T01:CDS | 45.0% |
| !! | GCAGTGTCACTTCGTCAAAT+TGG | - | Chr4:54433232-54433251 | None:intergenic | 45.0% |
| !! | TGAGTGCACTTTGGAGTCTT+GGG | + | Chr4:54432460-54432479 | MsG0480021152.01.T01:CDS | 45.0% |
| !! | TTGTGTTGGTGGTTGTATCC+GGG | + | Chr4:54432541-54432560 | MsG0480021152.01.T01:CDS | 45.0% |
| AATCACTGCGTGGTCTGGTT+TGG | + | Chr4:54433468-54433487 | MsG0480021152.01.T01:exon | 50.0% | |
| AGTGTAATCACTGCGTGGTC+TGG | + | Chr4:54433463-54433482 | MsG0480021152.01.T01:exon | 50.0% | |
| CAGATGAGTGCATTGCCAGA+TGG | + | Chr4:54433023-54433042 | MsG0480021152.01.T01:CDS | 50.0% | |
| CATTGCCAGAACCAAAACCC+CGG | - | Chr4:54432562-54432581 | None:intergenic | 50.0% | |
| GGGCACTTACCTTATTGGGT+TGG | + | Chr4:54432868-54432887 | MsG0480021152.01.T01:CDS | 50.0% | |
| TGGCAATGCACTCATCTGCA+GGG | - | Chr4:54433021-54433040 | None:intergenic | 50.0% | |
| !! | GAGTGCACTTTGGAGTCTTG+GGG | + | Chr4:54432461-54432480 | MsG0480021152.01.T01:CDS | 50.0% |
| !! | TGTGTTGGTGGTTGTATCCG+GGG | + | Chr4:54432542-54432561 | MsG0480021152.01.T01:CDS | 50.0% |
| !!! | TGTATCCGGGGTTTTGGTTC+TGG | + | Chr4:54432554-54432573 | MsG0480021152.01.T01:CDS | 50.0% |
| CTGGCAATGCACTCATCTGC+AGG | - | Chr4:54433022-54433041 | None:intergenic | 55.0% | |
| TTTCGTCGAGTGACGGCTGT+TGG | + | Chr4:54432618-54432637 | MsG0480021152.01.T01:CDS | 55.0% | |
| ! | GGTGGTTGTATCCGGGGTTT+TGG | + | Chr4:54432548-54432567 | MsG0480021152.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 54431892 | 54433798 | 54431892 | ID=MsG0480021152.01; |
| Chr4 | mRNA | 54431892 | 54433798 | 54431892 | ID=MsG0480021152.01.T01;Parent=MsG0480021152.01 |
| Chr4 | exon | 54431892 | 54433798 | 54431892 | ID=MsG0480021152.01.T01.exon;Parent=MsG0480021152.01.T01 |
| Chr4 | CDS | 54432249 | 54433064 | 54432249 | ID=MsG0480021152.01.T01.cds;Parent=MsG0480021152.01.T01 |
| Gene Sequence |
| Protein sequence |
