Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174690 | XP_024639480.1 | 95.152 | 165 | 8 | 0 | 1 | 165 | 1 | 165 | 5.10e-93 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174690 | I3SMD1 | 95.152 | 165 | 8 | 0 | 1 | 165 | 1 | 165 | 2.44e-93 | 277 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0174690 | 0.812510 | 4.089315e-51 | -8.615850e-47 |
| Msa0005000 | Msa0174690 | -0.800510 | 1.393613e-48 | -8.615850e-47 |
| Msa0022750 | Msa0174690 | -0.814675 | 1.365579e-51 | -8.615850e-47 |
| Msa0027390 | Msa0174690 | 0.805007 | 1.643117e-49 | -8.615850e-47 |
| Msa0039250 | Msa0174690 | 0.800594 | 1.339493e-48 | -8.615850e-47 |
| Msa0055070 | Msa0174690 | 0.831993 | 1.217708e-55 | -8.615850e-47 |
| Msa0070430 | Msa0174690 | 0.801872 | 7.334015e-49 | -8.615850e-47 |
| Msa0081650 | Msa0174690 | 0.802355 | 5.836250e-49 | -8.615850e-47 |
| Msa0097950 | Msa0174690 | 0.807343 | 5.293579e-50 | -8.615850e-47 |
| Msa0100160 | Msa0174690 | 0.801971 | 7.001011e-49 | -8.615850e-47 |
| Msa0101020 | Msa0174690 | 0.824303 | 8.682567e-54 | -8.615850e-47 |
| Msa0105520 | Msa0174690 | 0.807161 | 5.786149e-50 | -8.615850e-47 |
| Msa0108870 | Msa0174690 | 0.826362 | 2.827560e-54 | -8.615850e-47 |
| Msa0116790 | Msa0174690 | 0.825152 | 5.477313e-54 | -8.615850e-47 |
| Msa0119320 | Msa0174690 | 0.807648 | 4.561190e-50 | -8.615850e-47 |
| Msa0128650 | Msa0174690 | 0.988596 | 1.216646e-174 | -8.615850e-47 |
| Msa0133720 | Msa0174690 | 0.801401 | 9.161260e-49 | -8.615850e-47 |
| Msa0140170 | Msa0174690 | 0.829948 | 3.867797e-55 | -8.615850e-47 |
| Msa0145110 | Msa0174690 | 0.817813 | 2.713845e-52 | -8.615850e-47 |
| Msa0165300 | Msa0174690 | 0.812716 | 3.685306e-51 | -8.615850e-47 |
| Msa0174690 | Msa0181230 | 0.816790 | 4.612597e-52 | -8.615850e-47 |
| Msa0174690 | Msa0193540 | 0.835842 | 1.325670e-56 | -8.615850e-47 |
| Msa0174690 | Msa0198520 | 0.832328 | 1.006688e-55 | -8.615850e-47 |
| Msa0174690 | Msa0198530 | 0.837728 | 4.379877e-57 | -8.615850e-47 |
| Msa0174690 | Msa0235470 | 0.826352 | 2.843567e-54 | -8.615850e-47 |
| Msa0174690 | Msa0238030 | 0.800730 | 1.256594e-48 | -8.615850e-47 |
| Msa0174690 | Msa0244930 | 0.809536 | 1.802601e-50 | -8.615850e-47 |
| Msa0174690 | Msa0274630 | 0.829356 | 5.388597e-55 | -8.615850e-47 |
| Msa0174690 | Msa0276920 | 0.802871 | 4.566691e-49 | -8.615850e-47 |
| Msa0174690 | Msa0296980 | -0.800584 | 1.345846e-48 | -8.615850e-47 |
| Msa0174690 | Msa0314060 | 0.816857 | 4.453901e-52 | -8.615850e-47 |
| Msa0174690 | Msa0318720 | 0.831511 | 1.601247e-55 | -8.615850e-47 |
| Msa0174690 | Msa0321190 | 0.800068 | 1.713726e-48 | -8.615850e-47 |
| Msa0174690 | Msa0342290 | 0.802840 | 4.635854e-49 | -8.615850e-47 |
| Msa0174690 | Msa0343190 | 0.805792 | 1.125133e-49 | -8.615850e-47 |
| Msa0174690 | Msa0346990 | 0.812648 | 3.814494e-51 | -8.615850e-47 |
| Msa0174690 | Msa0384670 | 0.809356 | 1.970397e-50 | -8.615850e-47 |
| Msa0174690 | Msa0392200 | 0.815750 | 7.876731e-52 | -8.615850e-47 |
| Msa0174690 | Msa0410300 | 0.811485 | 6.839931e-51 | -8.615850e-47 |
| Msa0174690 | Msa0413730 | 0.805058 | 1.603499e-49 | -8.615850e-47 |
| Msa0174690 | Msa0434570 | 0.802336 | 5.888769e-49 | -8.615850e-47 |
| Msa0174690 | Msa0458780 | 0.818403 | 1.996422e-52 | -8.615850e-47 |
| Msa0174690 | Msa0461590 | 0.822166 | 2.739660e-53 | -8.615850e-47 |
| Msa0174690 | Msa0462220 | 0.804020 | 2.639636e-49 | -8.615850e-47 |
| Msa0174690 | Msa0478580 | 0.804625 | 1.974536e-49 | -8.615850e-47 |
| Msa0174690 | Msa0487780 | 0.814003 | 1.922024e-51 | -8.615850e-47 |
| Msa0174690 | Msa0517090 | 0.809135 | 2.197923e-50 | -8.615850e-47 |
| Msa0174690 | Msa0519390 | 0.822961 | 1.790225e-53 | -8.615850e-47 |
| Msa0174690 | Msa0526940 | 0.811068 | 8.420648e-51 | -8.615850e-47 |
| Msa0174690 | Msa0578090 | 0.807850 | 4.132793e-50 | -8.615850e-47 |
| Msa0174690 | Msa0584550 | 0.814448 | 1.533065e-51 | -8.615850e-47 |
| Msa0174690 | Msa0587190 | 0.805300 | 1.426825e-49 | -8.615850e-47 |
| Msa0174690 | Msa0628500 | 0.809672 | 1.685293e-50 | -8.615850e-47 |
| Msa0174690 | Msa0664760 | 0.810788 | 9.681721e-51 | -8.615850e-47 |
| Msa0174690 | Msa0679100 | 0.801468 | 8.876989e-49 | -8.615850e-47 |
| Msa0174690 | Msa0679550 | 0.811725 | 6.062917e-51 | -8.615850e-47 |
| Msa0174690 | Msa0682950 | 0.802112 | 6.546746e-49 | -8.615850e-47 |
| Msa0174690 | Msa0710270 | 0.821340 | 4.253836e-53 | -8.615850e-47 |
| Msa0174690 | Msa0744090 | 0.821851 | 3.240633e-53 | -8.615850e-47 |
| Msa0174690 | Msa0744100 | 0.818791 | 1.630422e-52 | -8.615850e-47 |
| Msa0174690 | Msa0747720 | -0.802021 | 6.836070e-49 | -8.615850e-47 |
| Msa0174690 | Msa0773590 | 0.815646 | 8.311398e-52 | -8.615850e-47 |
| Msa0174690 | Msa0788110 | 0.802857 | 4.597143e-49 | -8.615850e-47 |
| Msa0174690 | Msa0788120 | 0.807607 | 4.654829e-50 | -8.615850e-47 |
| Msa0174690 | Msa0811040 | 0.827298 | 1.690038e-54 | -8.615850e-47 |
| Msa0174690 | Msa0820250 | 0.800240 | 1.581163e-48 | -8.615850e-47 |
| Msa0174690 | Msa0825270 | 0.815047 | 1.128925e-51 | -8.615850e-47 |
| Msa0174690 | Msa0825280 | 0.827934 | 1.188933e-54 | -8.615850e-47 |
| Msa0174690 | Msa0851470 | 0.825257 | 5.174326e-54 | -8.615850e-47 |
| Msa0174690 | Msa0866400 | 0.808221 | 3.445270e-50 | -8.615850e-47 |
| Msa0174690 | Msa0930400 | -0.806040 | 9.977967e-50 | -8.615850e-47 |
| Msa0174690 | Msa0939000 | 0.805064 | 1.598874e-49 | -8.615850e-47 |
| Msa0174690 | Msa1010460 | 0.819492 | 1.128861e-52 | -8.615850e-47 |
| Msa0174690 | Msa1021510 | 0.804021 | 2.638232e-49 | -8.615850e-47 |
| Msa0174690 | Msa1032170 | 0.813714 | 2.225611e-51 | -8.615850e-47 |
| Msa0174690 | Msa1038080 | 0.801981 | 6.967711e-49 | -8.615850e-47 |
| Msa0174690 | Msa1040520 | 0.818113 | 2.322362e-52 | -8.615850e-47 |
| Msa0174690 | Msa1053200 | 0.837676 | 4.516592e-57 | -8.615850e-47 |
| Msa0174690 | Msa1098270 | 0.812042 | 5.172227e-51 | -8.615850e-47 |
| Msa0174690 | Msa1113010 | 0.802381 | 5.765201e-49 | -8.615850e-47 |
| Msa0174690 | Msa1113590 | 0.810257 | 1.260998e-50 | -8.615850e-47 |
| Msa0174690 | Msa1127770 | 0.821539 | 3.825686e-53 | -8.615850e-47 |
| Msa0174690 | Msa1130530 | 0.819117 | 1.374504e-52 | -8.615850e-47 |
| Msa0174690 | Msa1133570 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
| Msa0174690 | Msa1152510 | 0.814596 | 1.421146e-51 | -8.615850e-47 |
| Msa0174690 | Msa1158660 | 0.815144 | 1.074320e-51 | -8.615850e-47 |
| Msa0174690 | Msa1198880 | 0.807757 | 4.323944e-50 | -8.615850e-47 |
| Msa0174690 | Msa1214320 | 0.826716 | 2.328228e-54 | -8.615850e-47 |
| Msa0174690 | Msa1261070 | 0.808235 | 3.421523e-50 | -8.615850e-47 |
| Msa0174690 | Msa1280620 | 0.825671 | 4.128401e-54 | -8.615850e-47 |
| Msa0174690 | Msa1286550 | 0.801668 | 8.076511e-49 | -8.615850e-47 |
| Msa0174690 | Msa1294960 | 0.819812 | 9.539906e-53 | -8.615850e-47 |
| Msa0174690 | Msa1320820 | 0.819641 | 1.044066e-52 | -8.615850e-47 |
| Msa0174690 | Msa1341490 | 0.807196 | 5.688198e-50 | -8.615850e-47 |
| Msa0174690 | Msa1359920 | 0.824180 | 9.282187e-54 | -8.615850e-47 |
| Msa0174690 | Msa1366300 | 0.823051 | 1.705162e-53 | -8.615850e-47 |
| Msa0174690 | Msa1418920 | 0.806605 | 7.586273e-50 | -8.615850e-47 |
| Msa0174690 | Msa1422840 | 0.830549 | 2.759239e-55 | -8.615850e-47 |
| Msa0174690 | Msa1422910 | 0.803546 | 3.310623e-49 | -8.615850e-47 |
| Msa0174690 | Msa1426570 | 0.816993 | 4.151475e-52 | -8.615850e-47 |
| Msa0174690 | Msa1433220 | 0.807018 | 6.202538e-50 | -8.615850e-47 |
| Msa0174690 | Msa1445220 | 0.801196 | 1.009213e-48 | -8.615850e-47 |
| Msa0174690 | Msa1454530 | 0.800662 | 1.297233e-48 | -8.615850e-47 |
| Msa0174690 | Msa1463600 | 0.803399 | 3.551316e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174690 | MtrunA17_Chr1g0195361 | 95.152 | 165 | 8 | 0 | 1 | 165 | 1 | 165 | 4.69e-97 | 277 |
| Msa0174690 | MtrunA17_Chr1g0195381 | 49.618 | 131 | 61 | 2 | 32 | 157 | 23 | 153 | 7.91e-45 | 145 |
| Msa0174690 | MtrunA17_Chr7g0269431 | 45.122 | 164 | 57 | 3 | 1 | 164 | 2 | 132 | 2.78e-36 | 122 |
| Msa0174690 | MtrunA17_Chr6g0485071 | 32.877 | 146 | 92 | 4 | 4 | 144 | 5 | 149 | 4.60e-23 | 89.4 |
| Msa0174690 | MtrunA17_Chr8g0378491 | 34.746 | 118 | 72 | 3 | 30 | 144 | 27 | 142 | 1.12e-16 | 73.2 |
| Msa0174690 | MtrunA17_Chr7g0249501 | 31.148 | 122 | 78 | 3 | 34 | 151 | 42 | 161 | 8.00e-15 | 68.2 |
| Msa0174690 | MtrunA17_Chr7g0243261 | 30.526 | 95 | 64 | 2 | 35 | 128 | 56 | 149 | 3.13e-13 | 63.9 |
| Msa0174690 | MtrunA17_Chr8g0378501 | 27.434 | 113 | 79 | 2 | 34 | 144 | 32 | 143 | 1.55e-12 | 62.0 |
| Msa0174690 | MtrunA17_Chr7g0234601 | 31.304 | 115 | 72 | 4 | 34 | 144 | 37 | 148 | 1.98e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174690 | AT4G02360.1 | 53.947 | 152 | 60 | 1 | 3 | 154 | 9 | 150 | 9.43e-53 | 165 |
| Msa0174690 | AT4G02370.1 | 55.102 | 147 | 63 | 2 | 9 | 152 | 6 | 152 | 2.07e-52 | 164 |
| Msa0174690 | AT1G02816.1 | 58.594 | 128 | 52 | 1 | 32 | 158 | 31 | 158 | 3.87e-52 | 164 |
| Msa0174690 | AT1G02813.1 | 46.622 | 148 | 72 | 1 | 3 | 150 | 2 | 142 | 8.92e-43 | 139 |
| Msa0174690 | AT3G07460.1 | 31.481 | 162 | 95 | 7 | 4 | 161 | 2 | 151 | 1.41e-16 | 73.2 |
| Msa0174690 | AT3G07460.2 | 31.481 | 162 | 95 | 7 | 4 | 161 | 2 | 151 | 7.01e-16 | 73.2 |
| Msa0174690 | AT5G19590.1 | 29.661 | 118 | 81 | 1 | 29 | 144 | 27 | 144 | 4.80e-15 | 68.6 |
| Msa0174690 | AT5G19590.2 | 29.661 | 118 | 81 | 1 | 29 | 144 | 27 | 144 | 4.80e-15 | 68.6 |
| Msa0174690 | AT3G07470.3 | 30.714 | 140 | 83 | 5 | 8 | 143 | 13 | 142 | 2.36e-14 | 67.0 |
| Msa0174690 | AT3G07470.2 | 30.714 | 140 | 83 | 5 | 8 | 143 | 13 | 142 | 2.88e-14 | 67.0 |
| Msa0174690 | AT3G07470.1 | 30.822 | 146 | 86 | 6 | 3 | 143 | 7 | 142 | 3.16e-14 | 67.0 |
| Msa0174690 | AT5G37070.1 | 27.586 | 116 | 80 | 3 | 35 | 149 | 56 | 168 | 3.98e-13 | 63.9 |
| Msa0174690 | AT5G16380.1 | 33.333 | 141 | 84 | 6 | 6 | 143 | 9 | 142 | 4.10e-13 | 64.7 |
| Msa0174690 | AT3G08890.1 | 23.469 | 98 | 73 | 2 | 35 | 131 | 56 | 152 | 9.10e-11 | 57.8 |
| Msa0174690 | AT3G08890.2 | 23.469 | 98 | 73 | 2 | 35 | 131 | 56 | 152 | 9.10e-11 | 57.8 |
Find 30 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATTACTTCTGCTGGTTT+TGG | 0.248892 | 1_4:+60453571 | Msa0174690:CDS |
| TGTTGAAGTTTCTTCAATTT+AGG | 0.268351 | 1_4:+60453669 | Msa0174690:CDS |
| ATTGACCTGTTTCTCTGTTA+AGG | 0.276277 | 1_4:-60453357 | None:intergenic |
| TTGACCTGTTTCTCTGTTAA+GGG | 0.318122 | 1_4:-60453356 | None:intergenic |
| GAATACCCAATTGCTCCTTT+TGG | 0.335755 | 1_4:-60453334 | None:intergenic |
| CTTCTTCCAAAAGGAGCAAT+TGG | 0.352750 | 1_4:+60453328 | Msa0174690:CDS |
| TCTGTTGGGATTACTTCTGC+TGG | 0.400761 | 1_4:+60453565 | Msa0174690:CDS |
| GAATGCCCTCAGTGTGGTTG+TGG | 0.403933 | 1_4:+60453610 | Msa0174690:CDS |
| TATTCCCTTAACAGAGAAAC+AGG | 0.430305 | 1_4:+60453352 | Msa0174690:CDS |
| GTGGTGTGATTTCGCAGAAT+AGG | 0.437695 | 1_4:+60453452 | Msa0174690:CDS |
| ATCAGCGTACGATCTTCTAA+TGG | 0.446069 | 1_4:+60453285 | Msa0174690:CDS |
| AACCACACTGAGGGCATTCA+AGG | 0.446234 | 1_4:-60453606 | None:intergenic |
| CCAATGGGTCTTCTTCCAAA+AGG | 0.464533 | 1_4:+60453319 | Msa0174690:CDS |
| GATAATCATCTGAGGTTAAA+CGG | 0.466866 | 1_4:+60453643 | Msa0174690:CDS |
| TACGATCTTCTAATGGAATA+CGG | 0.472455 | 1_4:+60453292 | Msa0174690:CDS |
| AATGCCCTCAGTGTGGTTGT+GGG | 0.473689 | 1_4:+60453611 | Msa0174690:CDS |
| TATTGTTGAGGTTTCTCGTA+AGG | 0.475808 | 1_4:+60453525 | Msa0174690:CDS |
| ATGGAATACGGTTTCCCAAT+GGG | 0.477542 | 1_4:+60453304 | Msa0174690:CDS |
| TTCTTCCAAAAGGAGCAATT+GGG | 0.488774 | 1_4:+60453329 | Msa0174690:CDS |
| CCACAAAAGCAAAATCTTGA+CGG | 0.495996 | 1_4:-60453497 | None:intergenic |
| ATTGTTGAGGTTTCTCGTAA+GGG | 0.528099 | 1_4:+60453526 | Msa0174690:CDS |
| GAATAGGCTTTATAAACTCA+AGG | 0.537506 | 1_4:+60453468 | Msa0174690:CDS |
| AATGGAATACGGTTTCCCAA+TGG | 0.576232 | 1_4:+60453303 | Msa0174690:CDS |
| TTTGTGGTTGAATATTGTTG+AGG | 0.605032 | 1_4:+60453513 | Msa0174690:CDS |
| AATAGGCTTTATAAACTCAA+GGG | 0.613735 | 1_4:+60453469 | Msa0174690:CDS |
| AGCTACAAATCTACTATCAG+TGG | 0.618877 | 1_4:+60453433 | Msa0174690:CDS |
| TTGATTGCGATAATCATCTG+AGG | 0.632187 | 1_4:+60453635 | Msa0174690:CDS |
| CAAACCCACAACCACACTGA+GGG | 0.636398 | 1_4:-60453615 | None:intergenic |
| TTCCTTGAATGCCCTCAGTG+TGG | 0.651724 | 1_4:+60453604 | Msa0174690:CDS |
| TCAAACCCACAACCACACTG+AGG | 0.728360 | 1_4:-60453616 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATATTGATTTTTCTGT+TGG | + | chr1_4:60453550-60453569 | Msa0174690:CDS | 20.0% |
| !!! | ATGATATTGATTTTTCTGTT+GGG | + | chr1_4:60453551-60453570 | Msa0174690:CDS | 20.0% |
| !! | AATAGGCTTTATAAACTCAA+GGG | + | chr1_4:60453469-60453488 | Msa0174690:CDS | 25.0% |
| TACGATCTTCTAATGGAATA+CGG | + | chr1_4:60453292-60453311 | Msa0174690:CDS | 30.0% | |
| ! | GAATAGGCTTTATAAACTCA+AGG | + | chr1_4:60453468-60453487 | Msa0174690:CDS | 30.0% |
| TTTGTGGTTGAATATTGTTG+AGG | + | chr1_4:60453513-60453532 | Msa0174690:CDS | 30.0% | |
| ! | GATAATCATCTGAGGTTAAA+CGG | + | chr1_4:60453643-60453662 | Msa0174690:CDS | 30.0% |
| !!! | TAGCTTTTTCGGTTCGATTA+AGG | - | chr1_4:60453266-60453285 | None:intergenic | 35.0% |
| TTCTTCCAAAAGGAGCAATT+GGG | + | chr1_4:60453329-60453348 | Msa0174690:CDS | 35.0% | |
| TATTCCCTTAACAGAGAAAC+AGG | + | chr1_4:60453352-60453371 | Msa0174690:CDS | 35.0% | |
| ! | TTGACCTGTTTCTCTGTTAA+GGG | - | chr1_4:60453359-60453378 | None:intergenic | 35.0% |
| ! | ATTGACCTGTTTCTCTGTTA+AGG | - | chr1_4:60453360-60453379 | None:intergenic | 35.0% |
| AGCTACAAATCTACTATCAG+TGG | + | chr1_4:60453433-60453452 | Msa0174690:CDS | 35.0% | |
| CCACAAAAGCAAAATCTTGA+CGG | - | chr1_4:60453500-60453519 | None:intergenic | 35.0% | |
| TATTGTTGAGGTTTCTCGTA+AGG | + | chr1_4:60453525-60453544 | Msa0174690:CDS | 35.0% | |
| ATTGTTGAGGTTTCTCGTAA+GGG | + | chr1_4:60453526-60453545 | Msa0174690:CDS | 35.0% | |
| TTGATTGCGATAATCATCTG+AGG | + | chr1_4:60453635-60453654 | Msa0174690:CDS | 35.0% | |
| ! | TCGTACGCTGATAGCTTTTT+CGG | - | chr1_4:60453277-60453296 | None:intergenic | 40.0% |
| ATCAGCGTACGATCTTCTAA+TGG | + | chr1_4:60453285-60453304 | Msa0174690:CDS | 40.0% | |
| AATGGAATACGGTTTCCCAA+TGG | + | chr1_4:60453303-60453322 | Msa0174690:CDS | 40.0% | |
| ATGGAATACGGTTTCCCAAT+GGG | + | chr1_4:60453304-60453323 | Msa0174690:CDS | 40.0% | |
| !! | CTTTTGGAAGAAGACCCATT+GGG | - | chr1_4:60453321-60453340 | None:intergenic | 40.0% |
| CTTCTTCCAAAAGGAGCAAT+TGG | + | chr1_4:60453328-60453347 | Msa0174690:CDS | 40.0% | |
| ! | GAATACCCAATTGCTCCTTT+TGG | - | chr1_4:60453337-60453356 | None:intergenic | 40.0% |
| !! | CCGTCAAGATTTTGCTTTTG+TGG | + | chr1_4:60453497-60453516 | Msa0174690:CDS | 40.0% |
| !! | CCTTTTGGAAGAAGACCCAT+TGG | - | chr1_4:60453322-60453341 | None:intergenic | 45.0% |
| CCAATGGGTCTTCTTCCAAA+AGG | + | chr1_4:60453319-60453338 | Msa0174690:CDS | 45.0% | |
| GTGGTGTGATTTCGCAGAAT+AGG | + | chr1_4:60453452-60453471 | Msa0174690:CDS | 45.0% | |
| TCTGTTGGGATTACTTCTGC+TGG | + | chr1_4:60453565-60453584 | Msa0174690:CDS | 45.0% | |
| !!! | GGGATTACTTCTGCTGGTTT+TGG | + | chr1_4:60453571-60453590 | Msa0174690:CDS | 45.0% |
| TTCCTTGAATGCCCTCAGTG+TGG | + | chr1_4:60453604-60453623 | Msa0174690:CDS | 50.0% | |
| !! | AACCACACTGAGGGCATTCA+AGG | - | chr1_4:60453609-60453628 | None:intergenic | 50.0% |
| AATGCCCTCAGTGTGGTTGT+GGG | + | chr1_4:60453611-60453630 | Msa0174690:CDS | 50.0% | |
| CAAACCCACAACCACACTGA+GGG | - | chr1_4:60453618-60453637 | None:intergenic | 50.0% | |
| TCAAACCCACAACCACACTG+AGG | - | chr1_4:60453619-60453638 | None:intergenic | 50.0% | |
| GAATGCCCTCAGTGTGGTTG+TGG | + | chr1_4:60453610-60453629 | Msa0174690:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 60453193 | 60453690 | 60453193 | ID=Msa0174690;Name=Msa0174690 |
| chr1_4 | mRNA | 60453193 | 60453690 | 60453193 | ID=Msa0174690-mRNA-1;Parent=Msa0174690;Name=Msa0174690-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|165 |
| chr1_4 | exon | 60453193 | 60453690 | 60453193 | ID=Msa0174690-mRNA-1:exon:19129;Parent=Msa0174690-mRNA-1 |
| chr1_4 | CDS | 60453193 | 60453690 | 60453193 | ID=Msa0174690-mRNA-1:cds;Parent=Msa0174690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
