AlfalfaGEDB | Msa0174690

M. sativa cultivar zhongmu-4 / Msa0174690

KEGG: -
GO: -
PFAM: PF04398.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174690	XP_024639480.1	95.152	165	8	0	1	165	1	165	5.10e-93	277

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174690	I3SMD1	95.152	165	8	0	1	165	1	165	2.44e-93	277

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0174690	0.812510	4.089315e-51	-8.615850e-47
Msa0005000	Msa0174690	-0.800510	1.393613e-48	-8.615850e-47
Msa0022750	Msa0174690	-0.814675	1.365579e-51	-8.615850e-47
Msa0027390	Msa0174690	0.805007	1.643117e-49	-8.615850e-47
Msa0039250	Msa0174690	0.800594	1.339493e-48	-8.615850e-47
Msa0055070	Msa0174690	0.831993	1.217708e-55	-8.615850e-47
Msa0070430	Msa0174690	0.801872	7.334015e-49	-8.615850e-47
Msa0081650	Msa0174690	0.802355	5.836250e-49	-8.615850e-47
Msa0097950	Msa0174690	0.807343	5.293579e-50	-8.615850e-47
Msa0100160	Msa0174690	0.801971	7.001011e-49	-8.615850e-47

Showing 1 to 10 of 104 entries

Previous1 2 3 4 5…11Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174690	MtrunA17_Chr1g0195361	95.152	165	8	0	1	165	1	165	4.69e-97	277
Msa0174690	MtrunA17_Chr1g0195381	49.618	131	61	2	32	157	23	153	7.91e-45	145
Msa0174690	MtrunA17_Chr7g0269431	45.122	164	57	3	1	164	2	132	2.78e-36	122
Msa0174690	MtrunA17_Chr6g0485071	32.877	146	92	4	4	144	5	149	4.60e-23	89.4
Msa0174690	MtrunA17_Chr8g0378491	34.746	118	72	3	30	144	27	142	1.12e-16	73.2
Msa0174690	MtrunA17_Chr7g0249501	31.148	122	78	3	34	151	42	161	8.00e-15	68.2
Msa0174690	MtrunA17_Chr7g0243261	30.526	95	64	2	35	128	56	149	3.13e-13	63.9
Msa0174690	MtrunA17_Chr8g0378501	27.434	113	79	2	34	144	32	143	1.55e-12	62.0
Msa0174690	MtrunA17_Chr7g0234601	31.304	115	72	4	34	144	37	148	1.98e-11	59.3

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0174690	AT4G02360.1	53.947	152	60	1	3	154	9	150	9.43e-53	165
Msa0174690	AT4G02370.1	55.102	147	63	2	9	152	6	152	2.07e-52	164
Msa0174690	AT1G02816.1	58.594	128	52	1	32	158	31	158	3.87e-52	164
Msa0174690	AT1G02813.1	46.622	148	72	1	3	150	2	142	8.92e-43	139
Msa0174690	AT3G07460.1	31.481	162	95	7	4	161	2	151	1.41e-16	73.2
Msa0174690	AT3G07460.2	31.481	162	95	7	4	161	2	151	7.01e-16	73.2
Msa0174690	AT5G19590.1	29.661	118	81	1	29	144	27	144	4.80e-15	68.6
Msa0174690	AT5G19590.2	29.661	118	81	1	29	144	27	144	4.80e-15	68.6
Msa0174690	AT3G07470.3	30.714	140	83	5	8	143	13	142	2.36e-14	67.0
Msa0174690	AT3G07470.2	30.714	140	83	5	8	143	13	142	2.88e-14	67.0

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 30 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCACACTGAGGGCATTCA+AGG	0.446234	1_4:-60453606	None:intergenic
AATAGGCTTTATAAACTCAA+GGG	0.613735	1_4:+60453469	Msa0174690:CDS
AATGCCCTCAGTGTGGTTGT+GGG	0.473689	1_4:+60453611	Msa0174690:CDS
AATGGAATACGGTTTCCCAA+TGG	0.576232	1_4:+60453303	Msa0174690:CDS
AGCTACAAATCTACTATCAG+TGG	0.618877	1_4:+60453433	Msa0174690:CDS
ATCAGCGTACGATCTTCTAA+TGG	0.446069	1_4:+60453285	Msa0174690:CDS
ATGGAATACGGTTTCCCAAT+GGG	0.477542	1_4:+60453304	Msa0174690:CDS
ATTGACCTGTTTCTCTGTTA+AGG	0.276277	1_4:-60453357	None:intergenic
ATTGTTGAGGTTTCTCGTAA+GGG	0.528099	1_4:+60453526	Msa0174690:CDS
CAAACCCACAACCACACTGA+GGG	0.636398	1_4:-60453615	None:intergenic

Showing 1 to 10 of 30 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TACGATCTTCTAATGGAATA+CGG	+	chr1_4:60453292-60453311	Msa0174690:CDS	30.0%
TTTGTGGTTGAATATTGTTG+AGG	+	chr1_4:60453513-60453532	Msa0174690:CDS	30.0%
TTCTTCCAAAAGGAGCAATT+GGG	+	chr1_4:60453329-60453348	Msa0174690:CDS	35.0%
TATTCCCTTAACAGAGAAAC+AGG	+	chr1_4:60453352-60453371	Msa0174690:CDS	35.0%
AGCTACAAATCTACTATCAG+TGG	+	chr1_4:60453433-60453452	Msa0174690:CDS	35.0%
CCACAAAAGCAAAATCTTGA+CGG	-	chr1_4:60453500-60453519	None:intergenic	35.0%
TATTGTTGAGGTTTCTCGTA+AGG	+	chr1_4:60453525-60453544	Msa0174690:CDS	35.0%
ATTGTTGAGGTTTCTCGTAA+GGG	+	chr1_4:60453526-60453545	Msa0174690:CDS	35.0%
TTGATTGCGATAATCATCTG+AGG	+	chr1_4:60453635-60453654	Msa0174690:CDS	35.0%
ATCAGCGTACGATCTTCTAA+TGG	+	chr1_4:60453285-60453304	Msa0174690:CDS	40.0%

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	60453193	60453690	60453193	ID=Msa0174690;Name=Msa0174690
chr1_4	mRNA	60453193	60453690	60453193	ID=Msa0174690-mRNA-1;Parent=Msa0174690;Name=Msa0174690-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|165
chr1_4	exon	60453193	60453690	60453193	ID=Msa0174690-mRNA-1:exon:19129;Parent=Msa0174690-mRNA-1
chr1_4	CDS	60453193	60453690	60453193	ID=Msa0174690-mRNA-1:cds;Parent=Msa0174690-mRNA-1

Gene Sequence

>Msa0174690

ATGTATTCGATTAAATTCATGTTGATTTTGTTAATCTCTCTAACAATATCATCATCGTTATCATCATGTACCTTAATCGAACCGAAAAAGCTATCAGCGTACGATCTTCTAATGGAATACGGTTTCCCAATGGGTCTTCTTCCAAAAGGAGCAATTGGGTATTCCCTTAACAGAGAAACAGGTCAATTTTCTGTGTATTTCGAGAAAACTTGTAGCTTTGTTATTGAAAGCTATACACTTAGCTACAAATCTACTATCAGTGGTGTGATTTCGCAGAATAGGCTTTATAAACTCAAGGGTGTTTCCGTCAAGATTTTGCTTTTGTGGTTGAATATTGTTGAGGTTTCTCGTAAGGGTAATGATATTGATTTTTCTGTTGGGATTACTTCTGCTGGTTTTGGAGTTGAGAATTTCCTTGAATGCCCTCAGTGTGGTTGTGGGTTTGATTGCGATAATCATCTGAGGTTAAACGGTGATGTTGAAGTTTCTTCAATTTAG

Protein sequence

>Msa0174690

MYSIKFMLILLISLTISSSLSSCTLIEPKKLSAYDLLMEYGFPMGLLPKGAIGYSLNRETGQFSVYFEKTCSFVIESYTLSYKSTISGVISQNRLYKLKGVSVKILLLWLNIVEVSRKGNDIDFSVGITSAGFGVENFLECPQCGCGFDCDNHLRLNGDVEVSSI*