AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516040 MtrunA17_Chr3g0126511 93.182 220 12 2 222 438 145 364 2.89e-142 410
Msa0516040 MtrunA17_Chr3g0126511 97.561 164 4 0 1 164 1 164 2.70e-115 342
Msa0516040 MtrunA17_Chr3g0136711 64.205 176 63 0 239 414 105 280 3.77e-78 244
Msa0516040 MtrunA17_Chr3g0136711 56.471 85 37 0 80 164 20 104 1.19e-25 106
Msa0516040 MtrunA17_Chr1g0150451 64.773 176 62 0 239 414 148 323 3.83e-78 246
Msa0516040 MtrunA17_Chr1g0150451 48.214 112 51 2 53 164 43 147 1.67e-26 109
Msa0516040 MtrunA17_Chr1g0212961 61.017 177 65 2 239 415 166 338 1.44e-70 226
Msa0516040 MtrunA17_Chr1g0212961 42.405 158 62 4 26 163 16 164 1.12e-27 112
Msa0516040 MtrunA17_Chr4g0050381 35.088 342 141 10 77 414 12 276 1.84e-47 164
Msa0516040 MtrunA17_Chr2g0279151 48.045 179 87 4 239 414 105 280 3.93e-44 155
Msa0516040 MtrunA17_Chr3g0115851 44.134 179 94 4 239 414 106 281 9.60e-42 149
Msa0516040 MtrunA17_Chr4g0070871 47.191 178 68 4 260 412 325 501 3.05e-40 150
Msa0516040 MtrunA17_Chr3g0112291 44.624 186 80 4 260 423 200 384 5.74e-40 147
Msa0516040 MtrunA17_Chr3g0105351 40.437 183 98 3 241 416 138 316 7.35e-40 145
Msa0516040 MtrunA17_Chr3g0105371 41.530 183 96 3 241 416 162 340 1.23e-39 145
Msa0516040 MtrunA17_Chr5g0426141 44.134 179 94 4 239 414 106 281 1.38e-39 143
Msa0516040 MtrunA17_Chr8g0360351 45.506 178 91 4 241 415 108 282 3.19e-38 140
Msa0516040 MtrunA17_Chr1g0150781 44.809 183 78 3 260 420 368 549 3.33e-38 145
Msa0516040 MtrunA17_Chr5g0430481 41.530 183 96 3 241 416 198 376 3.35e-38 142
Msa0516040 MtrunA17_Chr2g0317021 44.262 183 96 4 235 414 153 332 1.09e-36 137
Msa0516040 MtrunA17_Chr3g0135961 44.505 182 78 4 260 419 364 544 2.40e-36 140
Msa0516040 MtrunA17_Chr2g0299981 41.758 182 83 3 260 419 360 540 9.57e-36 138
Msa0516040 MtrunA17_Chr5g0435721 54.839 124 54 2 260 382 298 420 4.11e-35 135
Msa0516040 MtrunA17_Chr1g0150071 29.412 374 192 12 89 433 18 348 7.73e-33 127
Msa0516040 MtrunA17_Chr8g0389921 39.024 205 104 6 241 428 248 448 1.80e-32 128
Msa0516040 MtrunA17_Chr4g0051661 39.698 199 110 6 222 414 203 397 4.82e-32 125
Msa0516040 MtrunA17_Chr1g0171571 44.872 156 83 3 260 412 487 642 1.15e-31 127
Msa0516040 MtrunA17_Chr5g0396731 40.909 176 83 3 260 415 177 351 9.29e-30 118
Msa0516040 MtrunA17_Chr3g0144111 38.095 189 101 6 241 418 48 231 1.11e-29 116
Msa0516040 MtrunA17_Chr1g0158781 45.029 171 74 4 260 412 209 377 2.25e-28 115
Msa0516040 MtrunA17_Chr4g0001761 28.448 348 194 13 89 416 18 330 1.20e-27 113
Msa0516040 MtrunA17_Chr2g0293811 33.188 229 120 7 212 412 106 329 1.25e-27 113
Msa0516040 MtrunA17_Chr5g0407161 31.933 238 137 7 197 417 119 348 2.08e-27 112
Msa0516040 MtrunA17_Chr3g0136811 37.113 194 101 5 260 435 160 350 9.01e-26 107
Msa0516040 MtrunA17_Chr4g0065141 32.836 201 118 4 231 417 156 353 3.23e-25 106
Msa0516040 MtrunA17_Chr1g0194191 33.889 180 103 4 260 426 188 364 1.78e-24 104
Msa0516040 MtrunA17_Chr3g0138281 33.166 199 118 5 231 417 153 348 6.74e-23 99.8
Msa0516040 MtrunA17_Chr6g0483411 32.995 197 109 5 241 416 126 320 4.35e-22 96.3
Msa0516040 MtrunA17_Chr7g0272061 32.323 198 110 6 239 412 162 359 2.03e-18 86.7
Msa0516040 MtrunA17_Chr1g0192421 30.622 209 116 7 235 415 144 351 3.07e-18 85.9
Msa0516040 MtrunA17_Chr4g0067711 31.285 179 103 6 239 399 154 330 1.47e-17 84.0
Msa0516040 MtrunA17_Chr2g0295401 31.414 191 105 7 254 420 171 359 3.53e-17 82.8
Msa0516040 MtrunA17_Chr1g0185141 29.204 226 102 7 245 412 211 436 2.50e-16 81.6
Msa0516040 MtrunA17_Chr1g0209451 33.516 182 105 7 246 412 115 295 3.61e-16 80.1
Msa0516040 MtrunA17_Chr1g0187481 30.519 154 90 2 262 415 142 278 1.64e-15 76.6
Msa0516040 MtrunA17_Chr7g0256751 29.902 204 104 8 244 409 116 318 1.66e-15 78.2
Msa0516040 MtrunA17_Chr8g0371321 28.141 199 104 5 239 399 120 317 1.69e-15 77.8
Msa0516040 MtrunA17_Chr1g0153671 32.474 194 116 6 246 424 112 305 2.78e-15 77.4
Msa0516040 MtrunA17_Chr7g0263281 27.350 234 110 6 241 415 114 346 3.68e-15 76.6
Msa0516040 MtrunA17_Chr1g0213351 28.431 204 107 5 234 399 116 318 6.28e-15 76.3
Msa0516040 MtrunA17_Chr1g0151781 35.526 152 81 4 245 380 137 287 8.33e-15 75.5
Msa0516040 MtrunA17_Chr7g0256771 31.461 178 81 7 244 382 117 292 1.41e-14 74.3
Msa0516040 MtrunA17_Chr1g0207571 29.775 178 90 4 260 403 129 305 1.43e-14 75.1
Msa0516040 MtrunA17_Chr4g0004971 32.051 156 88 4 260 398 166 320 1.58e-14 74.7
Msa0516040 MtrunA17_Chr7g0221691 31.841 201 109 6 260 434 232 430 1.97e-14 75.1
Msa0516040 MtrunA17_Chr7g0249421 35.897 156 82 4 260 398 207 361 4.65e-14 73.9
Msa0516040 MtrunA17_Chr1g0175381 26.794 209 102 5 260 417 147 355 4.73e-14 73.6
Msa0516040 MtrunA17_Chr4g0022171 31.073 177 104 4 239 398 172 347 6.78e-14 73.6
Msa0516040 MtrunA17_Chr2g0324061 32.768 177 101 4 239 398 165 340 8.18e-14 73.2
Msa0516040 MtrunA17_Chr7g0243571 32.903 155 87 4 260 398 188 341 1.09e-13 72.8
Msa0516040 MtrunA17_Chr7g0250061 27.807 187 98 5 251 403 135 318 1.81e-13 71.6
Msa0516040 MtrunA17_Chr3g0089721 30.178 169 87 4 260 397 137 305 2.30e-13 71.2
Msa0516040 MtrunA17_Chr4g0068971 32.576 132 76 4 300 421 110 238 2.63e-13 70.1
Msa0516040 MtrunA17_Chr8g0342431 35.172 145 75 5 271 398 208 350 4.02e-13 70.9
Msa0516040 MtrunA17_Chr1g0166481 30.968 155 84 4 263 415 141 274 5.43e-13 68.9
Msa0516040 MtrunA17_Chr1g0211251 27.273 165 88 3 260 392 149 313 7.53e-13 69.7
Msa0516040 MtrunA17_Chr1g0181901 25.373 201 101 5 229 380 96 296 7.62e-13 69.7
Msa0516040 MtrunA17_Chr3g0089711 29.586 169 88 4 260 397 137 305 7.94e-13 69.7
Msa0516040 MtrunA17_Chr3g0089691 29.586 169 88 4 260 397 51 219 1.16e-12 68.6
Msa0516040 MtrunA17_Chr4g0066371 27.358 212 115 7 241 414 130 340 1.23e-12 69.3
Msa0516040 MtrunA17_Chr7g0225501 32.927 164 99 6 260 412 154 317 1.94e-12 68.9
Msa0516040 MtrunA17_Chr3g0133801 29.834 181 113 5 246 412 113 293 2.60e-12 68.2
Msa0516040 MtrunA17_Chr5g0394181 33.168 202 106 11 234 415 406 598 2.94e-12 68.6
Msa0516040 MtrunA17_Chr7g0271971 30.270 185 110 7 241 412 117 295 1.33e-11 66.2
Msa0516040 MtrunA17_Chr2g0286951 27.273 209 113 8 244 414 134 341 3.59e-11 64.7
Msa0516040 MtrunA17_Chr1g0192471 27.717 184 116 5 241 412 117 295 5.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516040 AT5G53140.1 72.350 217 57 2 222 435 152 368 2.41e-103 314
Msa0516040 AT5G53140.1 50.279 179 66 6 1 164 1 171 1.57e-43 158
Msa0516040 AT5G53140.2 72.350 217 57 2 222 435 152 368 2.41e-103 314
Msa0516040 AT5G53140.2 50.279 179 66 6 1 164 1 171 1.57e-43 158
Msa0516040 AT4G31750.2 65.909 176 60 0 239 414 104 279 1.92e-78 246
Msa0516040 AT4G31750.2 54.118 85 39 0 80 164 19 103 2.21e-25 105
Msa0516040 AT4G31750.1 59.420 207 71 1 239 432 104 310 2.39e-78 246
Msa0516040 AT4G31750.1 54.118 85 39 0 80 164 19 103 2.91e-25 105
Msa0516040 AT4G31750.3 59.420 207 71 1 239 432 104 310 2.39e-78 246
Msa0516040 AT4G31750.3 54.118 85 39 0 80 164 19 103 2.91e-25 105
Msa0516040 AT5G10740.1 66.477 176 59 0 239 414 104 279 4.76e-77 244
Msa0516040 AT5G10740.1 56.098 82 36 0 83 164 22 103 8.75e-25 105
Msa0516040 AT5G10740.2 66.477 176 59 0 239 414 104 279 4.76e-77 244
Msa0516040 AT5G10740.2 56.098 82 36 0 83 164 22 103 8.75e-25 105
Msa0516040 AT5G24940.1 64.205 176 63 0 239 414 104 279 6.68e-74 239
Msa0516040 AT5G24940.1 57.831 83 35 0 82 164 21 103 2.28e-25 108
Msa0516040 AT1G43900.1 59.659 176 70 1 239 414 194 368 8.79e-70 226
Msa0516040 AT1G43900.1 55.556 72 32 0 92 163 121 192 9.56e-22 96.7
Msa0516040 AT1G78200.1 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0516040 AT1G78200.3 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0516040 AT1G78200.2 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0516040 AT1G78200.5 33.119 311 131 5 107 414 1 237 1.83e-44 155
Msa0516040 AT1G78200.4 33.119 311 131 5 107 414 1 237 1.83e-44 155
Msa0516040 AT1G34750.2 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0516040 AT1G34750.2 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0516040 AT1G34750.1 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0516040 AT1G34750.1 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0516040 AT1G34750.3 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0516040 AT1G34750.3 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0516040 AT1G22280.1 45.251 179 92 4 239 414 105 280 4.65e-41 147
Msa0516040 AT1G22280.3 45.251 179 92 4 239 414 111 286 5.14e-41 147
Msa0516040 AT2G20630.1 43.386 189 101 4 230 415 94 279 2.97e-39 143
Msa0516040 AT4G28400.3 43.386 189 101 4 230 415 76 261 5.71e-39 141
Msa0516040 AT4G28400.1 43.386 189 101 4 230 415 98 283 8.61e-39 142
Msa0516040 AT2G30020.1 44.809 183 91 4 241 416 215 394 1.52e-38 144
Msa0516040 AT1G07160.1 42.391 184 95 3 241 416 198 378 3.92e-38 142
Msa0516040 AT2G29380.1 45.349 172 72 3 260 412 190 358 5.18e-37 139
Msa0516040 AT1G72770.4 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0516040 AT1G72770.1 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0516040 AT1G72770.3 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0516040 AT2G20630.2 42.553 188 102 4 230 414 94 278 6.04e-37 137
Msa0516040 AT2G40180.1 43.243 185 94 5 239 416 207 387 4.33e-36 137
Msa0516040 AT3G15260.2 44.444 180 94 4 239 415 113 289 6.70e-36 134
Msa0516040 AT3G15260.1 44.444 180 94 4 239 415 113 289 6.70e-36 134
Msa0516040 AT1G17550.1 42.308 182 82 4 260 419 326 506 6.05e-35 136
Msa0516040 AT1G17550.2 42.308 182 82 4 260 419 326 506 6.05e-35 136
Msa0516040 AT4G26080.1 39.378 193 88 3 260 424 241 432 7.07e-35 134
Msa0516040 AT1G07430.1 54.839 124 54 2 260 382 233 355 7.15e-35 135
Msa0516040 AT5G57050.2 42.778 180 75 3 260 412 191 369 8.26e-35 133
Msa0516040 AT5G51760.2 41.709 199 90 3 244 416 185 383 1.40e-34 133
Msa0516040 AT5G51760.1 41.709 199 90 3 244 416 215 413 1.62e-34 133
Msa0516040 AT5G57050.1 42.778 180 75 3 260 412 231 409 1.90e-34 133
Msa0516040 AT5G59220.1 55.645 124 53 2 260 382 221 343 3.21e-34 132
Msa0516040 AT1G67820.2 47.917 144 71 2 239 378 151 294 4.23e-34 132
Msa0516040 AT1G67820.1 47.917 144 71 2 239 378 187 330 9.87e-34 132
Msa0516040 AT3G11410.1 54.032 124 55 2 260 382 221 343 1.30e-33 130
Msa0516040 AT2G40860.1 42.857 196 94 7 234 412 452 646 2.36e-32 130
Msa0516040 AT2G40860.4 42.857 196 94 7 234 412 354 548 2.53e-32 129
Msa0516040 AT3G51470.2 34.685 222 126 5 212 417 68 286 5.72e-32 124
Msa0516040 AT3G51470.1 34.685 222 126 5 212 417 112 330 1.75e-31 124
Msa0516040 AT2G33700.1 34.821 224 123 7 212 417 129 347 2.17e-30 121
Msa0516040 AT1G34750.4 48.951 143 65 5 241 380 108 245 2.27e-30 118
Msa0516040 AT1G34750.4 37.500 88 54 1 77 163 17 104 5.84e-11 63.2
Msa0516040 AT2G25070.1 27.548 363 201 11 89 427 18 342 4.54e-30 120
Msa0516040 AT2G25070.2 27.548 363 201 11 89 427 18 342 4.54e-30 120
Msa0516040 AT4G31860.1 28.919 370 206 12 89 436 18 352 1.89e-29 118
Msa0516040 AT2G34740.1 40.881 159 88 4 260 414 178 334 2.25e-28 115
Msa0516040 AT2G25620.1 37.766 188 98 4 241 412 170 354 8.42e-28 114
Msa0516040 AT2G25620.2 37.766 188 98 4 241 412 170 354 8.42e-28 114
Msa0516040 AT2G40860.2 40.659 182 91 6 234 398 452 633 1.08e-27 116
Msa0516040 AT3G62260.3 40.606 165 86 4 260 414 97 259 1.41e-27 111
Msa0516040 AT3G62260.1 40.606 165 86 4 260 414 186 348 8.93e-27 111
Msa0516040 AT3G62260.2 40.606 165 86 4 260 414 187 349 9.59e-27 111
Msa0516040 AT4G31860.3 30.132 302 164 10 89 378 18 284 3.42e-26 107
Msa0516040 AT4G28400.2 44.138 145 75 4 230 371 98 239 6.99e-26 105
Msa0516040 AT4G31860.2 30.375 293 157 10 89 369 18 275 4.98e-25 104
Msa0516040 AT3G17250.1 35.503 169 93 4 260 415 229 394 2.17e-23 102
Msa0516040 AT1G48040.1 35.955 178 100 4 260 426 187 361 3.23e-23 101
Msa0516040 AT1G18030.1 33.838 198 108 5 239 415 154 349 1.04e-22 99.4
Msa0516040 AT3G16800.4 39.103 156 78 4 260 398 75 230 1.30e-22 97.1
Msa0516040 AT3G16800.6 39.103 156 78 4 260 398 75 230 1.30e-22 97.1
Msa0516040 AT3G16800.2 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0516040 AT3G16800.1 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0516040 AT3G16800.3 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0516040 AT4G32950.1 34.921 189 96 7 260 424 139 324 1.06e-19 90.1
Msa0516040 AT5G59220.2 60.256 78 29 2 260 336 221 297 2.28e-19 88.6
Msa0516040 AT4G08260.1 34.857 175 92 7 244 412 48 206 2.38e-19 86.7
Msa0516040 AT4G27800.1 30.476 210 106 5 239 411 139 345 2.38e-19 89.7
Msa0516040 AT5G27930.1 33.898 177 99 4 239 398 156 331 3.54e-19 89.4
Msa0516040 AT5G27930.2 33.898 177 99 4 239 398 156 331 3.54e-19 89.4
Msa0516040 AT3G05640.2 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0516040 AT3G05640.1 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0516040 AT3G05640.3 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0516040 AT1G18030.2 34.899 149 79 3 239 371 154 300 1.34e-18 86.7
Msa0516040 AT2G40860.3 40.278 144 71 5 234 362 452 595 1.59e-18 88.6
Msa0516040 AT2G34740.3 42.241 116 61 4 260 371 174 287 5.14e-18 84.7
Msa0516040 AT2G34740.2 42.241 116 61 4 260 371 192 305 5.16e-18 85.1
Msa0516040 AT3G63340.12 24.582 419 215 14 95 432 72 470 1.87e-17 85.1
Msa0516040 AT5G36250.1 30.846 201 108 6 260 436 207 400 6.09e-17 83.2
Msa0516040 AT5G01700.1 31.797 217 122 7 224 416 76 290 6.41e-17 82.0
Msa0516040 AT3G63340.6 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0516040 AT3G63340.3 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0516040 AT3G63340.10 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0516040 AT3G63340.4 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0516040 AT3G63340.11 24.171 422 213 14 95 432 72 470 8.68e-17 83.6
Msa0516040 AT3G63340.7 24.408 422 212 14 95 432 72 470 8.97e-17 83.6
Msa0516040 AT3G63340.5 24.408 422 212 14 95 432 72 470 9.89e-17 83.6
Msa0516040 AT3G63340.1 24.408 422 212 14 95 432 72 470 9.89e-17 83.6
Msa0516040 AT3G63340.8 24.408 422 212 14 95 432 72 470 1.06e-16 83.2
Msa0516040 AT5G57050.3 53.750 80 35 2 260 338 231 309 1.23e-16 80.9
Msa0516040 AT3G17090.1 28.507 221 105 5 249 417 142 361 1.25e-16 81.6
Msa0516040 AT1G79630.2 30.918 207 118 7 229 412 121 325 1.26e-16 82.0
Msa0516040 AT1G79630.7 30.918 207 118 7 229 412 121 325 1.26e-16 82.0
Msa0516040 AT5G01700.2 31.797 217 122 7 224 416 125 339 2.25e-16 80.9
Msa0516040 AT1G16220.1 29.004 231 140 6 229 436 168 397 2.64e-16 81.3
Msa0516040 AT1G79630.6 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0516040 AT1G79630.3 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0516040 AT1G79630.4 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0516040 AT1G79630.5 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0516040 AT4G27800.2 31.073 177 86 4 239 382 139 312 4.14e-16 79.7
Msa0516040 AT4G27800.3 31.073 177 86 4 239 382 139 312 4.19e-16 79.3
Msa0516040 AT1G72770.2 54.545 77 33 2 260 335 326 401 4.67e-16 80.1
Msa0516040 AT1G72770.5 54.545 77 33 2 260 335 326 401 4.67e-16 80.1
Msa0516040 AT1G79630.1 30.918 207 118 7 229 412 191 395 5.37e-16 80.5
Msa0516040 AT1G79630.8 30.918 207 118 7 229 412 187 391 6.60e-16 80.1
Msa0516040 AT5G26010.1 36.913 149 76 4 249 380 135 282 1.17e-15 78.2
Msa0516040 AT3G55050.1 28.788 198 102 5 244 403 130 326 1.43e-15 78.6
Msa0516040 AT3G55050.2 28.788 198 102 5 244 403 130 326 1.43e-15 78.6
Msa0516040 AT5G66080.2 28.079 203 107 5 239 403 19 220 1.65e-15 77.0
Msa0516040 AT5G66080.1 28.079 203 107 5 239 403 123 324 1.93e-15 78.2
Msa0516040 AT2G05050.1 38.144 97 54 1 322 412 91 187 3.36e-15 74.3
Msa0516040 AT3G51370.2 28.571 203 106 5 239 403 35 236 4.22e-15 75.9
Msa0516040 AT3G51370.1 28.571 203 106 5 239 403 120 321 5.86e-15 76.6
Msa0516040 AT3G51370.3 28.571 203 106 5 239 403 120 321 5.86e-15 76.6
Msa0516040 AT1G68410.4 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0516040 AT1G68410.3 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0516040 AT1G68410.1 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0516040 AT1G68410.2 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0516040 AT3G02750.2 32.487 197 103 6 260 432 216 406 7.02e-15 77.0
Msa0516040 AT3G02750.1 32.487 197 103 6 260 432 216 406 7.02e-15 77.0
Msa0516040 AT3G17090.2 30.675 163 82 3 249 380 142 304 1.89e-14 74.3
Msa0516040 AT3G63340.2 32.927 164 88 6 291 432 340 503 2.05e-14 76.3
Msa0516040 AT3G27140.1 30.220 182 85 3 260 432 61 209 2.51e-14 72.8
Msa0516040 AT4G38520.2 27.083 240 117 7 234 415 117 356 2.72e-14 74.7
Msa0516040 AT4G38520.1 27.083 240 117 7 234 415 117 356 2.72e-14 74.7
Msa0516040 AT1G47380.1 29.167 192 122 5 246 423 111 302 3.38e-14 74.7
Msa0516040 AT1G09160.2 31.214 173 102 7 256 412 124 295 5.54e-14 73.9
Msa0516040 AT1G09160.1 31.214 173 102 7 256 412 124 295 5.54e-14 73.9
Msa0516040 AT5G36250.2 28.837 215 108 7 260 436 207 414 8.21e-14 73.6
Msa0516040 AT3G12620.2 26.961 204 110 5 234 399 119 321 2.10e-13 72.0
Msa0516040 AT3G12620.1 26.961 204 110 5 234 399 119 321 2.10e-13 72.0
Msa0516040 AT5G02760.1 25.322 233 118 6 239 415 113 345 2.49e-13 71.6
Msa0516040 AT1G03590.1 34.058 138 73 4 260 380 185 321 7.80e-13 70.5
Msa0516040 AT4G32950.2 38.889 126 59 5 260 368 139 263 4.31e-12 67.0
Msa0516040 AT4G03415.1 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0516040 AT4G03415.3 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0516040 AT4G03415.2 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0516040 AT1G22280.2 45.570 79 39 3 239 316 105 180 3.09e-11 62.8

Find 110 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTATTGTGATCATTTA+TGG 0.053137 3_4:-67466043 Msa0516040:three_prime_UTR
GTTTGCTATAAATAAGTTTA+TGG 0.168904 3_4:-67465990 Msa0516040:three_prime_UTR
GCATCTTGATAACTGAATTT+TGG 0.186147 3_4:+67472133 None:intergenic
GCTCTTTCTAAAACTTATTA+TGG 0.205589 3_4:-67466014 Msa0516040:three_prime_UTR
TCAAGGATCACCTGGATTTC+AGG 0.221623 3_4:+67468061 None:intergenic
CTGTGGGTATTCAAGCTTTA+GGG 0.229516 3_4:-67470705 Msa0516040:CDS
AAACACACTTATAGCCAATT+TGG 0.238676 3_4:+67469555 None:intergenic
GGCCGTTCAGTGTGCTTATT+TGG 0.250467 3_4:-67470629 Msa0516040:CDS
TTTGTTTGAATCTACTAAAA+TGG 0.257355 3_4:+67472185 None:intergenic
GCTGTGGGTATTCAAGCTTT+AGG 0.283523 3_4:-67470706 Msa0516040:CDS
TACTGCTTCAACCGCTGTTT+TGG 0.298247 3_4:-67469248 Msa0516040:CDS
TCAGGTACTTGGAGGGTTGG+AGG 0.316866 3_4:-67468145 Msa0516040:intron
TTATCTGCTGGTCAGGTACT+TGG 0.318306 3_4:-67468156 Msa0516040:intron
TTCCGCTCATCACTTCTATT+AGG 0.319364 3_4:+67468750 None:intergenic
CTAGCTGTACTAGCTTTATC+AGG 0.329502 3_4:+67466227 None:intergenic
GAGGATGATTCTGCTCGTTC+TGG 0.338595 3_4:-67471656 Msa0516040:CDS
GTGTATGATTCTAGGGTAGA+TGG 0.345251 3_4:-67471891 Msa0516040:intron
CTATTTCATTCAAGGGGTCT+AGG 0.354349 3_4:-67469412 Msa0516040:CDS
CGTCTTTATGTTGCTAATGT+TGG 0.369537 3_4:-67469217 Msa0516040:CDS
AGGGGTCTAGGGTTGGTTCA+TGG 0.373370 3_4:-67469400 Msa0516040:CDS
CTAGACCCCTTGAATGAAAT+AGG 0.374141 3_4:+67469413 None:intergenic
TTCTTGCAAGTGATGGACTC+TGG 0.377103 3_4:-67466864 Msa0516040:CDS
TTCTCTCGCACGCGCGGAAG+AGG 0.379452 3_4:-67466363 Msa0516040:CDS
ATTAACTTAAGTAACCTTGC+AGG 0.385220 3_4:-67469340 Msa0516040:CDS
CTAGCAATGTCCCGTGCATT+TGG 0.388360 3_4:-67468118 Msa0516040:CDS
TCAGGTTCTGCTACAACAAA+TGG 0.406761 3_4:+67468079 None:intergenic
TCGCGCTGCTGAGTATTTGA+AGG 0.414937 3_4:-67469626 Msa0516040:CDS
CGGAAGAGAATTGAGAATGC+TGG 0.418557 3_4:-67468732 Msa0516040:CDS
TGCTTATTTGGAATATTTGA+TGG 0.436479 3_4:-67470617 Msa0516040:intron
CAGTTTCTTCATCTATCTCC+TGG 0.443845 3_4:+67466896 None:intergenic
TGTTAGTCCTATTTCATTCA+AGG 0.445734 3_4:-67469420 Msa0516040:CDS
GTTAGTCCTATTTCATTCAA+GGG 0.446364 3_4:-67469419 Msa0516040:CDS
ACAATAAATGCATACTCAAA+TGG 0.447235 3_4:+67469442 None:intergenic
AGGTACTTGGAGGGTTGGAG+GGG 0.452329 3_4:-67468143 Msa0516040:CDS
TCTGCTGGTCAGGTACTTGG+AGG 0.462237 3_4:-67468153 Msa0516040:intron
ATTAAGACATCAACCATTGA+TGG 0.465203 3_4:-67470650 Msa0516040:CDS
GTGCTTGTTCTTGCAAGTGA+TGG 0.466824 3_4:-67466871 Msa0516040:CDS
TGTTGCCATTCAATTACGTT+CGG 0.467610 3_4:-67471826 Msa0516040:CDS
GGCAGCTGCTCGTAAGTTAA+CGG 0.470980 3_4:-67466333 Msa0516040:CDS
TATTTCATTCAAGGGGTCTA+GGG 0.472109 3_4:-67469411 Msa0516040:CDS
CAGGTACTTGGAGGGTTGGA+GGG 0.476854 3_4:-67468144 Msa0516040:CDS
GACAAGAACGTATAAACAAA+TGG 0.481541 3_4:+67469484 None:intergenic
GAGCAGAATCATCCTCTTTG+TGG 0.485689 3_4:+67471663 None:intergenic
GTTATATCAAAAGCCGGAAA+AGG 0.487838 3_4:-67469181 Msa0516040:intron
TCATTCAAGGGGTCTAGGGT+TGG 0.498128 3_4:-67469407 Msa0516040:CDS
GGAAGAGAATTGAGAATGCT+GGG 0.498423 3_4:-67468731 Msa0516040:CDS
ATTCGAAACACGAGATTAAG+AGG 0.504443 3_4:+67472027 None:intergenic
CAACAAATGGCTTCAGCATA+CGG 0.504649 3_4:+67468092 None:intergenic
GGCTTGTAGAGGCTCCAGTT+TGG 0.506243 3_4:-67465969 Msa0516040:three_prime_UTR
TCTTGCAAGTGATGGACTCT+GGG 0.506521 3_4:-67466863 Msa0516040:CDS
GCACACTGAACGGCCATCAA+TGG 0.510832 3_4:+67470637 None:intergenic
AGCAGAATCATCCTCTTTGT+GGG 0.511509 3_4:+67471664 None:intergenic
TGAGAATGAGATGAGGGTGG+AGG 0.514850 3_4:+67472218 None:intergenic
ATTGAATGGCAACAATCTCT+TGG 0.515224 3_4:+67471835 None:intergenic
GGTTCTATGTCAACAAGGGC+TGG 0.523229 3_4:-67471710 Msa0516040:CDS
ATAGGGATGATGGTTGATAC+AGG 0.529679 3_4:-67471731 Msa0516040:CDS
GAATAAGTACATAGGGATGA+TGG 0.530731 3_4:-67471741 Msa0516040:CDS
TGTAGCAGAACCTGAAATCC+AGG 0.531929 3_4:-67468071 Msa0516040:intron
TCTCTCGCACGCGCGGAAGA+GGG 0.531984 3_4:-67466362 Msa0516040:CDS
TGCTGTTTCTCTCGCACGCG+CGG 0.535097 3_4:-67466369 Msa0516040:CDS
GCTGATATGTTTCACCTGCA+AGG 0.538951 3_4:+67469326 None:intergenic
ATGAGATGAGAATGAGATGA+GGG 0.542105 3_4:+67472212 None:intergenic
TTCCTCCGAACGTAATTGAA+TGG 0.542928 3_4:+67471821 None:intergenic
AAAGATAATTTCCGGGATGA+CGG 0.544350 3_4:-67469274 Msa0516040:CDS
TTGTGTGCTTGATTTATTGA+GGG 0.544963 3_4:-67466152 Msa0516040:three_prime_UTR
ATTGTGTGCTTGATTTATTG+AGG 0.552318 3_4:-67466153 Msa0516040:intron
TTGTTACTGGTGGATGCAAG+AGG 0.557429 3_4:-67471631 Msa0516040:intron
TTAGTCCTATTTCATTCAAG+GGG 0.558305 3_4:-67469418 Msa0516040:CDS
CTGCTGGTCAGGTACTTGGA+GGG 0.558808 3_4:-67468152 Msa0516040:intron
GTGTTTAAGAATAAGTACAT+AGG 0.559274 3_4:-67471749 Msa0516040:CDS
TGTTTAAGAATAAGTACATA+GGG 0.560733 3_4:-67471748 Msa0516040:CDS
CTGGGATGTAGTACAGAATG+AGG 0.561731 3_4:-67466845 Msa0516040:intron
AGAACTGTTATATCAAAAGC+CGG 0.562263 3_4:-67469187 Msa0516040:CDS
GAGTGACTTACATTACAAAA+CGG 0.573171 3_4:+67466064 None:intergenic
AATAAGTTTATGGCTTGTAG+AGG 0.583008 3_4:-67465980 Msa0516040:three_prime_UTR
AACAAGGGCTGGACCCTCTG+TGG 0.584711 3_4:-67471699 Msa0516040:CDS
AAGCAGTAGAACCGTCATCC+CGG 0.586100 3_4:+67469263 None:intergenic
TGGTCAGGTACTTGGAGGGT+TGG 0.587206 3_4:-67468148 Msa0516040:intron
AGATGAGAATGAGATGAGGG+TGG 0.595369 3_4:+67472215 None:intergenic
AGATAACATTACTTGTATTG+TGG 0.598689 3_4:-67466285 Msa0516040:CDS
CTTGTCAAATCTGACATCAT+CGG 0.601544 3_4:-67469467 Msa0516040:CDS
TGCCATTCAATTACGTTCGG+AGG 0.605951 3_4:-67471823 Msa0516040:CDS
CATACGGTTGCCAAATGCAC+GGG 0.607533 3_4:+67468108 None:intergenic
GCATACGGTTGCCAAATGCA+CGG 0.608451 3_4:+67468107 None:intergenic
TTCCAAATAAGCACACTGAA+CGG 0.610019 3_4:+67470627 None:intergenic
TGTGGGTATTCAAGCTTTAG+GGG 0.620144 3_4:-67470704 Msa0516040:CDS
ACGCGCGGAAGAGGGAGCTG+AGG 0.624807 3_4:-67466354 Msa0516040:CDS
AAGGGCTGGACCCTCTGTGG+AGG 0.633314 3_4:-67471696 Msa0516040:CDS
AATATCATAGAAATCCTCCA+TGG 0.634352 3_4:+67470670 None:intergenic
CAACATTAGCAACATAAAGA+CGG 0.638225 3_4:+67469218 None:intergenic
AAGAGTCTGCACATGCATGA+TGG 0.638768 3_4:-67466129 Msa0516040:three_prime_UTR
GAAGAGAATTGAGAATGCTG+GGG 0.645480 3_4:-67468730 Msa0516040:CDS
GTGGGTATTCAAGCTTTAGG+GGG 0.647356 3_4:-67470703 Msa0516040:CDS
GATGAGATGAGAATGAGATG+AGG 0.647967 3_4:+67472211 None:intergenic
GAAGATGAAAGACTTAGCTG+TGG 0.649418 3_4:-67470722 Msa0516040:CDS
ATACAGGTTCTATGTCAACA+AGG 0.649790 3_4:-67471715 Msa0516040:CDS
AAGATGAAAGACTTAGCTGT+GGG 0.649895 3_4:-67470721 Msa0516040:CDS
TAATTGCGAAAGAAATGTGA+AGG 0.649934 3_4:+67472093 None:intergenic
AGGTGAAACATATCAGCAGA+CGG 0.662640 3_4:-67469320 Msa0516040:CDS
GGATACTGTGTCCCACAAAG+AGG 0.664416 3_4:-67471675 Msa0516040:CDS
ATTCTAGGGTAGATGGTATG+CGG 0.672838 3_4:-67471884 Msa0516040:intron
ATATTCCATGCAGGTCATGG+TGG 0.673781 3_4:-67469652 Msa0516040:intron
GGAGATAGATGAAGAAACTG+AGG 0.679288 3_4:-67466893 Msa0516040:CDS
AACCTAATAGAAGTGATGAG+CGG 0.688453 3_4:-67468752 Msa0516040:CDS
TACAGGTTCTATGTCAACAA+GGG 0.688710 3_4:-67471714 Msa0516040:CDS
GACACAGTATCCTCCACAGA+GGG 0.693531 3_4:+67471686 None:intergenic
AAGAGAATTGAGAATGCTGG+GGG 0.703336 3_4:-67468729 Msa0516040:CDS
GGGGAAGAGAGTGACCATGG+AGG 0.741569 3_4:-67470684 Msa0516040:CDS
ACGGTTATCAACCAAAACAG+CGG 0.747863 3_4:+67469237 None:intergenic
GGACACAGTATCCTCCACAG+AGG 0.792073 3_4:+67471685 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTGATTATTTTAAATA+TGG - chr3_4:67466593-67466612 Msa0516040:intron 10.0%
!!! TTTACATTAGATTTTTATAT+TGG - chr3_4:67466710-67466729 Msa0516040:intron 10.0%
!!! TTACATTAGATTTTTATATT+GGG - chr3_4:67466711-67466730 Msa0516040:intron 10.0%
!! TTTGTAATTAAAAGTAAAAT+AGG - chr3_4:67470284-67470303 Msa0516040:intron 10.0%
!!! AGTTGTATATAATTTTTTAT+CGG - chr3_4:67470622-67470641 Msa0516040:CDS 10.0%
!!! TGTTGTATATAATTTTTTAT+TGG - chr3_4:67470657-67470676 Msa0516040:CDS 10.0%
!! ATAAAAAAAAGTTAATTTCA+GGG - chr3_4:67470837-67470856 Msa0516040:intron 10.0%
!! ATATATTAAAATGGCTTATA+AGG - chr3_4:67466744-67466763 Msa0516040:intron 15.0%
!! ATAGTAATCTTAAAAATTCA+TGG - chr3_4:67467693-67467712 Msa0516040:intron 15.0%
!!! TTATTGTTTTGATTTTTCTT+TGG + chr3_4:67467984-67468003 None:intergenic 15.0%
!! ATGTAATTTGATTAAGAAAT+GGG - chr3_4:67469966-67469985 Msa0516040:intron 15.0%
!!! GTTGTATATAATTTTTTATC+GGG - chr3_4:67470623-67470642 Msa0516040:CDS 15.0%
!! TTGAAAATTCATTAATTTCA+CGG + chr3_4:67470727-67470746 None:intergenic 15.0%
!! GATAAAAAAAAGTTAATTTC+AGG - chr3_4:67470836-67470855 Msa0516040:intron 15.0%
!! ATTTAATCCCTAATATAATA+GGG + chr3_4:67470904-67470923 None:intergenic 15.0%
!! TATTTAATCCCTAATATAAT+AGG + chr3_4:67470905-67470924 None:intergenic 15.0%
!! TCATTAGTAACAAATATAAT+TGG - chr3_4:67471436-67471455 Msa0516040:intron 15.0%
!!! AAGAAAAAACACATTTTATT+TGG + chr3_4:67471679-67471698 None:intergenic 15.0%
!! TTTGTTTGAATCTACTAAAA+TGG + chr3_4:67465997-67466016 None:intergenic 20.0%
!! AATGCGAAAATTAATAAGAT+CGG + chr3_4:67466222-67466241 None:intergenic 20.0%
!!! TAATTTTTGTGTATGATTCT+AGG - chr3_4:67466280-67466299 Msa0516040:CDS 20.0%
!!! AATTTTTGTGTATGATTCTA+GGG - chr3_4:67466281-67466300 Msa0516040:CDS 20.0%
!! TGTTTAAGAATAAGTACATA+GGG - chr3_4:67466431-67466450 Msa0516040:intron 20.0%
!! CGAACTGATATATATTAAAA+TGG - chr3_4:67466735-67466754 Msa0516040:intron 20.0%
!! TCGAAAAAAAAAAATCTTAC+AGG + chr3_4:67466941-67466960 None:intergenic 20.0%
!!! AGAATCAATTTTGCAATTAT+TGG - chr3_4:67466962-67466981 Msa0516040:intron 20.0%
!!! AATTTTGCAATTATTGGTTT+TGG - chr3_4:67466968-67466987 Msa0516040:intron 20.0%
!!! AGGATTTTTTTTAACACATA+TGG - chr3_4:67467044-67467063 Msa0516040:intron 20.0%
!!! GGATTTTTTTTAACACATAT+GGG - chr3_4:67467045-67467064 Msa0516040:intron 20.0%
!!! GATTTTTTTTAACACATATG+GGG - chr3_4:67467046-67467065 Msa0516040:intron 20.0%
!!! AAACAGTTTTAGTTTAAATG+AGG - chr3_4:67467208-67467227 Msa0516040:intron 20.0%
!! TACTAAAATATCACTACTAT+TGG + chr3_4:67467322-67467341 None:intergenic 20.0%
!!! ATAGTAGTGATATTTTAGTA+AGG - chr3_4:67467322-67467341 Msa0516040:intron 20.0%
!!! TAGTAGTGATATTTTAGTAA+GGG - chr3_4:67467323-67467342 Msa0516040:intron 20.0%
!! TTGTTTACGTATATTACTAA+TGG - chr3_4:67467755-67467774 Msa0516040:intron 20.0%
!!! GCAACTTATTATTTAGTTTT+TGG - chr3_4:67467777-67467796 Msa0516040:intron 20.0%
!!! AATCTAAATATTACCTTTTC+CGG + chr3_4:67469014-67469033 None:intergenic 20.0%
!! TGAAGAAATCAAAATATAGT+AGG + chr3_4:67469038-67469057 None:intergenic 20.0%
!!! TATTATTGAGGATATGTTTT+TGG - chr3_4:67469534-67469553 Msa0516040:CDS 20.0%
!! GATGTAATTTGATTAAGAAA+TGG - chr3_4:67469965-67469984 Msa0516040:intron 20.0%
!! AGATTGCATAACTTTAATTA+AGG + chr3_4:67470156-67470175 None:intergenic 20.0%
!! CAATCTATTATTTGATTGTA+TGG - chr3_4:67470170-67470189 Msa0516040:intron 20.0%
!! AAGTACTTATAAATATAGTG+TGG - chr3_4:67470319-67470338 Msa0516040:intron 20.0%
!! AGTACTTATAAATATAGTGT+GGG - chr3_4:67470320-67470339 Msa0516040:intron 20.0%
!!! ATATAATTTTTTATCGGGTA+AGG - chr3_4:67470628-67470647 Msa0516040:CDS 20.0%
!! CTATAGTTTCAATGTTAAAA+CGG + chr3_4:67470687-67470706 None:intergenic 20.0%
!!! ATAATGGATATACAATTACA+TGG + chr3_4:67470756-67470775 None:intergenic 20.0%
!!! AACAGTTTCAAATACATTTT+TGG - chr3_4:67471005-67471024 Msa0516040:intron 20.0%
!!! TTATTTCCTCATATATTTTC+AGG - chr3_4:67471259-67471278 Msa0516040:intron 20.0%
!!! TTCATCTTCATTTAAAGTAT+TGG + chr3_4:67471582-67471601 None:intergenic 20.0%
!!! GTTTGCTATAAATAAGTTTA+TGG - chr3_4:67472189-67472208 Msa0516040:five_prime_UTR 20.0%
! GTGTTTAAGAATAAGTACAT+AGG - chr3_4:67466430-67466449 Msa0516040:intron 25.0%
! AAAATGGCTTATAAGGTTAT+TGG - chr3_4:67466751-67466770 Msa0516040:intron 25.0%
! CTAAATTTACAATGACCAAA+TGG + chr3_4:67466855-67466874 None:intergenic 25.0%
! CATTTGGTCATTGTAAATTT+AGG - chr3_4:67466853-67466872 Msa0516040:CDS 25.0%
!! TAAATTTAGGATCGAAGTAT+TGG - chr3_4:67466866-67466885 Msa0516040:CDS 25.0%
!! GAAATATCTGTTTTCTTCTT+GGG - chr3_4:67466990-67467009 Msa0516040:intron 25.0%
!! AAATATCTGTTTTCTTCTTG+GGG - chr3_4:67466991-67467010 Msa0516040:intron 25.0%
! TAATACAAATCAGTTTGGTA+AGG + chr3_4:67467159-67467178 None:intergenic 25.0%
!!! GTTGATAATACAAATCAGTT+TGG + chr3_4:67467164-67467183 None:intergenic 25.0%
! ATTATCAACTTACCAAATGA+CGG - chr3_4:67467175-67467194 Msa0516040:intron 25.0%
!! TATGTCGCTGAATTTTTAAT+TGG - chr3_4:67467430-67467449 Msa0516040:intron 25.0%
!! TGCTTATTTGGAATATTTGA+TGG - chr3_4:67467562-67467581 Msa0516040:intron 25.0%
! GACTCATGAAAAAATAAGAT+TGG - chr3_4:67467715-67467734 Msa0516040:intron 25.0%
! AAAAAATAAGATTGGACAAC+TGG - chr3_4:67467723-67467742 Msa0516040:intron 25.0%
! GAAAATAAGATATGAGAAGA+GGG + chr3_4:67468257-67468276 None:intergenic 25.0%
!!! ATTTTCCATTTTTCAATGCA+CGG - chr3_4:67468271-67468290 Msa0516040:intron 25.0%
! TTTATTTGTCTACAGTGAAA+TGG - chr3_4:67468369-67468388 Msa0516040:intron 25.0%
! TTATTTGTCTACAGTGAAAT+GGG - chr3_4:67468370-67468389 Msa0516040:intron 25.0%
!!! TATTTTAGCTTAACGAAACT+AGG - chr3_4:67468400-67468419 Msa0516040:intron 25.0%
!!! ATTTTAGCTTAACGAAACTA+GGG - chr3_4:67468401-67468420 Msa0516040:intron 25.0%
! ACAATAAATGCATACTCAAA+TGG + chr3_4:67468740-67468759 None:intergenic 25.0%
!! ACTCTGAAAAAGATAATTTC+CGG - chr3_4:67468897-67468916 Msa0516040:intron 25.0%
!!! ATGAGTTCGTTTTTATGAAA+AGG + chr3_4:67469146-67469165 None:intergenic 25.0%
!! TTCACATTATAAGTTTTCTC+TGG + chr3_4:67469184-67469203 None:intergenic 25.0%
! TAACTACATAAGATATCACT+TGG - chr3_4:67469231-67469250 Msa0516040:CDS 25.0%
! TCTAGATTGTTCTATTATTG+AGG - chr3_4:67469522-67469541 Msa0516040:CDS 25.0%
! GATGTGTATCAATTTATCAT+TGG - chr3_4:67469597-67469616 Msa0516040:CDS 25.0%
!!! AAGTTTTTTGATGATGACAT+CGG - chr3_4:67469636-67469655 Msa0516040:CDS 25.0%
! TACAAAGTAACAATGAGAAT+AGG - chr3_4:67469830-67469849 Msa0516040:intron 25.0%
! AACTTTAATTAAGGTACACA+AGG + chr3_4:67470147-67470166 None:intergenic 25.0%
! GTACTTATAAATATAGTGTG+GGG - chr3_4:67470321-67470340 Msa0516040:intron 25.0%
!!! CGTTTTAACATTGAAACTAT+AGG - chr3_4:67470685-67470704 Msa0516040:CDS 25.0%
! AACATTGAAACTATAGGAAT+TGG - chr3_4:67470691-67470710 Msa0516040:CDS 25.0%
! ACTATAGGAATTGGTTAATT+CGG - chr3_4:67470700-67470719 Msa0516040:CDS 25.0%
!! AGTTTGAAATTTCGCAATAT+CGG - chr3_4:67470863-67470882 Msa0516040:intron 25.0%
! ATAATAGGGATCAGTTAATT+TGG + chr3_4:67470890-67470909 None:intergenic 25.0%
! TAACTGATCCCTATTATATT+AGG - chr3_4:67470893-67470912 Msa0516040:intron 25.0%
! AACTGATCCCTATTATATTA+GGG - chr3_4:67470894-67470913 Msa0516040:intron 25.0%
!!! TAGTTTTTTTTAGATCCATG+TGG - chr3_4:67470935-67470954 Msa0516040:intron 25.0%
!!! TTTTGAAGTTCTCGTAAATA+TGG + chr3_4:67470968-67470987 None:intergenic 25.0%
!!! ATTTGTTTTCTTGCTAAAGT+GGG + chr3_4:67471101-67471120 None:intergenic 25.0%
!!! TATTTGTTTTCTTGCTAAAG+TGG + chr3_4:67471102-67471121 None:intergenic 25.0%
! AATCGTTAAATATTACATGG+GGG + chr3_4:67471559-67471578 None:intergenic 25.0%
! GAATCGTTAAATATTACATG+GGG + chr3_4:67471560-67471579 None:intergenic 25.0%
! GGAATCGTTAAATATTACAT+GGG + chr3_4:67471561-67471580 None:intergenic 25.0%
! TGGAATCGTTAAATATTACA+TGG + chr3_4:67471562-67471581 None:intergenic 25.0%
! ACACAATAAATTGAGGTTAA+TGG + chr3_4:67471628-67471647 None:intergenic 25.0%
! TTAACCTCAATTTATTGTGT+CGG - chr3_4:67471628-67471647 Msa0516040:intron 25.0%
! GGTTTAAAAATAAATCATGC+CGG + chr3_4:67471658-67471677 None:intergenic 25.0%
! AGAGAAAAATAAACACAACA+TGG + chr3_4:67471741-67471760 None:intergenic 25.0%
!!! GTTGTGTTTATTTTTCTCTT+TGG - chr3_4:67471742-67471761 Msa0516040:CDS 25.0%
! AGATAACATTACTTGTATTG+TGG - chr3_4:67471894-67471913 Msa0516040:intron 25.0%
! TCTTGTATTGTGATCATTTA+TGG - chr3_4:67472136-67472155 Msa0516040:five_prime_UTR 25.0%
!!! GCTCTTTCTAAAACTTATTA+TGG - chr3_4:67472165-67472184 Msa0516040:five_prime_UTR 25.0%
! ACAAAACAAAAATACCAAAC+TGG + chr3_4:67472227-67472246 None:intergenic 25.0%
!! GCATCTTGATAACTGAATTT+TGG + chr3_4:67466049-67466068 None:intergenic 30.0%
TAATTGCGAAAGAAATGTGA+AGG + chr3_4:67466089-67466108 None:intergenic 30.0%
!! AGCTTTATCTCTTTTCGATA+TGG - chr3_4:67466799-67466818 Msa0516040:intron 30.0%
! GGAAATATCTGTTTTCTTCT+TGG - chr3_4:67466989-67467008 Msa0516040:intron 30.0%
AACACATATGGGGTTAAAAA+TGG - chr3_4:67467056-67467075 Msa0516040:intron 30.0%
TTATCAACTTACCAAATGAC+GGG - chr3_4:67467176-67467195 Msa0516040:intron 30.0%
!! ATTTTAGTAAGGGCTTATAG+TGG - chr3_4:67467333-67467352 Msa0516040:intron 30.0%
TACTTGATCGCAATATAGAT+AGG + chr3_4:67467405-67467424 None:intergenic 30.0%
AATATCATAGAAATCCTCCA+TGG + chr3_4:67467512-67467531 None:intergenic 30.0%
ATTAAGACATCAACCATTGA+TGG - chr3_4:67467529-67467548 Msa0516040:intron 30.0%
!! TTAAATCTTTCTAGTTCTCC+AGG - chr3_4:67467617-67467636 Msa0516040:intron 30.0%
! CATTTTTCATATGAAATGCC+TGG + chr3_4:67467638-67467657 None:intergenic 30.0%
!!! TCCCTATTTTTTCTTTGCTT+GGG + chr3_4:67467804-67467823 None:intergenic 30.0%
!!! TTCCCTATTTTTTCTTTGCT+TGG + chr3_4:67467805-67467824 None:intergenic 30.0%
TATTAAATGCTATGCACACT+TGG + chr3_4:67467840-67467859 None:intergenic 30.0%
GTATAACTCACAAACTGTTT+CGG + chr3_4:67467868-67467887 None:intergenic 30.0%
TTGTGAGTTATACATGTTTG+TGG - chr3_4:67467875-67467894 Msa0516040:intron 30.0%
! TTTCTTTGGAAGATCAACAT+AGG + chr3_4:67467970-67467989 None:intergenic 30.0%
! AGAAAGATCAAAACTGATTC+AGG + chr3_4:67468041-67468060 None:intergenic 30.0%
! ACATTTTGTTGAAAGCTCAT+GGG + chr3_4:67468134-67468153 None:intergenic 30.0%
! TACATTTTGTTGAAAGCTCA+TGG + chr3_4:67468135-67468154 None:intergenic 30.0%
GGAAAATAAGATATGAGAAG+AGG + chr3_4:67468258-67468277 None:intergenic 30.0%
CTAACATTGCAAATATTCGA+AGG - chr3_4:67468300-67468319 Msa0516040:intron 30.0%
AGATATATCAATGACCACAA+AGG - chr3_4:67468462-67468481 Msa0516040:intron 30.0%
AACTCGTTTAGAAATTCTCA+AGG + chr3_4:67468503-67468522 None:intergenic 30.0%
! GAGTTTTTAATATTCCATGC+AGG - chr3_4:67468518-67468537 Msa0516040:intron 30.0%
TTGGTATCTGTCAAAAACTT+CGG + chr3_4:67468608-67468627 None:intergenic 30.0%
! GTTTTTGACAGATACCAAAT+TGG - chr3_4:67468610-67468629 Msa0516040:intron 30.0%
AAACACACTTATAGCCAATT+TGG + chr3_4:67468627-67468646 None:intergenic 30.0%
GACAAGAACGTATAAACAAA+TGG + chr3_4:67468698-67468717 None:intergenic 30.0%
TGTTAGTCCTATTTCATTCA+AGG - chr3_4:67468759-67468778 Msa0516040:CDS 30.0%
GTTAGTCCTATTTCATTCAA+GGG - chr3_4:67468760-67468779 Msa0516040:CDS 30.0%
TTAGTCCTATTTCATTCAAG+GGG - chr3_4:67468761-67468780 Msa0516040:CDS 30.0%
!! TCATTTTTCAGTCTGTTATG+TGG - chr3_4:67468810-67468829 Msa0516040:intron 30.0%
ATTAACTTAAGTAACCTTGC+AGG - chr3_4:67468839-67468858 Msa0516040:intron 30.0%
! CTCTGAAAAAGATAATTTCC+GGG - chr3_4:67468898-67468917 Msa0516040:intron 30.0%
CAACATTAGCAACATAAAGA+CGG + chr3_4:67468964-67468983 None:intergenic 30.0%
AGAACTGTTATATCAAAAGC+CGG - chr3_4:67468992-67469011 Msa0516040:intron 30.0%
! GTCTAGCTCACTAATAATAT+TGG - chr3_4:67469071-67469090 Msa0516040:intron 30.0%
CTCACTAATAATATTGGTAG+TGG - chr3_4:67469077-67469096 Msa0516040:intron 30.0%
! AAAGCATTTCTAACAAGACA+AGG - chr3_4:67469259-67469278 Msa0516040:CDS 30.0%
AAGCATTTCTAACAAGACAA+GGG - chr3_4:67469260-67469279 Msa0516040:CDS 30.0%
! CATTTTGTGCAAGATACAAT+GGG - chr3_4:67469559-67469578 Msa0516040:CDS 30.0%
! ATTTTGTGCAAGATACAATG+GGG - chr3_4:67469560-67469579 Msa0516040:CDS 30.0%
! ATGCATGAAGTATTATCTTC+TGG - chr3_4:67469691-67469710 Msa0516040:intron 30.0%
!!! CAATGCAGTTTACACTTTTT+TGG + chr3_4:67469755-67469774 None:intergenic 30.0%
CTTAATCAAATTACATCCCT+TGG + chr3_4:67469962-67469981 None:intergenic 30.0%
CATTATCTACATTCACTGTT+AGG + chr3_4:67470235-67470254 None:intergenic 30.0%
! TGTATGGGTTATTCAGTATT+AGG - chr3_4:67470454-67470473 Msa0516040:intron 30.0%
TAGTTTCAATGTTAAAACGG+TGG + chr3_4:67470684-67470703 None:intergenic 30.0%
AGAAAAGACTAGTACGATAA+TGG + chr3_4:67470772-67470791 None:intergenic 30.0%
GTCCTTCAAATTATCCTAAA+TGG - chr3_4:67470805-67470824 Msa0516040:intron 30.0%
! GTCCATTTAGGATAATTTGA+AGG + chr3_4:67470810-67470829 None:intergenic 30.0%
TTTATCACATGAGTCCATTT+AGG + chr3_4:67470822-67470841 None:intergenic 30.0%
AAATATGGACAAAATCCACA+TGG + chr3_4:67470953-67470972 None:intergenic 30.0%
!! TTTGTTTTCTTGCTAAAGTG+GGG + chr3_4:67471100-67471119 None:intergenic 30.0%
ATGATGTGGATAACCTTAAA+GGG - chr3_4:67471171-67471190 Msa0516040:intron 30.0%
TTGCTTTCACATACATAATC+AGG - chr3_4:67471393-67471412 Msa0516040:intron 30.0%
ATGAAGATGTATATTTCAGC+TGG - chr3_4:67471485-67471504 Msa0516040:intron 30.0%
!! GTTCTAAAAGTGTGAAAACT+CGG + chr3_4:67471518-67471537 None:intergenic 30.0%
AGATAAGTACTCAACATTCT+TGG - chr3_4:67471601-67471620 Msa0516040:intron 30.0%
!!! TTATTTTTCTCTTTGGTGCT+CGG - chr3_4:67471749-67471768 Msa0516040:CDS 30.0%
ATTGTGTGCTTGATTTATTG+AGG - chr3_4:67472026-67472045 Msa0516040:five_prime_UTR 30.0%
TTGTGTGCTTGATTTATTGA+GGG - chr3_4:67472027-67472046 Msa0516040:five_prime_UTR 30.0%
GAGTGACTTACATTACAAAA+CGG + chr3_4:67472118-67472137 None:intergenic 30.0%
! AATAAGTTTATGGCTTGTAG+AGG - chr3_4:67472199-67472218 Msa0516040:five_prime_UTR 30.0%
ATGAGATGAGAATGAGATGA+GGG + chr3_4:67465970-67465989 None:intergenic 35.0%
ATTCGAAACACGAGATTAAG+AGG + chr3_4:67466155-67466174 None:intergenic 35.0%
ATTGAATGGCAACAATCTCT+TGG + chr3_4:67466347-67466366 None:intergenic 35.0%
TGTTGCCATTCAATTACGTT+CGG - chr3_4:67466353-67466372 Msa0516040:CDS 35.0%
GAATAAGTACATAGGGATGA+TGG - chr3_4:67466438-67466457 Msa0516040:intron 35.0%
ATACAGGTTCTATGTCAACA+AGG - chr3_4:67466464-67466483 Msa0516040:intron 35.0%
TACAGGTTCTATGTCAACAA+GGG - chr3_4:67466465-67466484 Msa0516040:intron 35.0%
AACACGCTACTTAACTATCT+CGG + chr3_4:67466679-67466698 None:intergenic 35.0%
GCAACATTTACATCTCCATT+TGG - chr3_4:67466837-67466856 Msa0516040:intron 35.0%
ACATATGGGGTTAAAAATGG+AGG - chr3_4:67467059-67467078 Msa0516040:intron 35.0%
CATATGGGGTTAAAAATGGA+GGG - chr3_4:67467060-67467079 Msa0516040:intron 35.0%
ATATGGGGTTAAAAATGGAG+GGG - chr3_4:67467061-67467080 Msa0516040:intron 35.0%
AAAAATGGAGGGGTTATTCA+TGG - chr3_4:67467071-67467090 Msa0516040:intron 35.0%
GGAGGGAAGTAAAAAAAACA+TGG + chr3_4:67467138-67467157 None:intergenic 35.0%
ACAAATCAGTTTGGTAAGGA+GGG + chr3_4:67467155-67467174 None:intergenic 35.0%
TACAAATCAGTTTGGTAAGG+AGG + chr3_4:67467156-67467175 None:intergenic 35.0%
AAGATGAAAGACTTAGCTGT+GGG - chr3_4:67467458-67467477 Msa0516040:intron 35.0%
TTCCAAATAAGCACACTGAA+CGG + chr3_4:67467555-67467574 None:intergenic 35.0%
!!! CCCTATTTTTTCTTTGCTTG+GGG + chr3_4:67467803-67467822 None:intergenic 35.0%
CCCCAAGCAAAGAAAAAATA+GGG - chr3_4:67467800-67467819 Msa0516040:intron 35.0%
! TAAAGCAAGCTTTTCTGCTT+AGG + chr3_4:67467929-67467948 None:intergenic 35.0%
ACAGAAGCTTCATAAAGACA+GGG + chr3_4:67468072-67468091 None:intergenic 35.0%
TACAGAAGCTTCATAAAGAC+AGG + chr3_4:67468073-67468092 None:intergenic 35.0%
! CATTTTGTTGAAAGCTCATG+GGG + chr3_4:67468133-67468152 None:intergenic 35.0%
GTTGCGAAAATTGCTAAATC+TGG - chr3_4:67468176-67468195 Msa0516040:intron 35.0%
TGGAACTTAATTCAAGAAGC+AGG + chr3_4:67468220-67468239 None:intergenic 35.0%
TTAATATTCCATGCAGGTCA+TGG - chr3_4:67468524-67468543 Msa0516040:intron 35.0%
CTTGTCAAATCTGACATCAT+CGG - chr3_4:67468712-67468731 Msa0516040:CDS 35.0%
TATTTCATTCAAGGGGTCTA+GGG - chr3_4:67468768-67468787 Msa0516040:CDS 35.0%
AAAGATAATTTCCGGGATGA+CGG - chr3_4:67468905-67468924 Msa0516040:intron 35.0%
CGTCTTTATGTTGCTAATGT+TGG - chr3_4:67468962-67468981 Msa0516040:intron 35.0%
GTTATATCAAAAGCCGGAAA+AGG - chr3_4:67468998-67469017 Msa0516040:intron 35.0%
AACCTAATAGAAGTGATGAG+CGG - chr3_4:67469427-67469446 Msa0516040:CDS 35.0%
! GCATTTTGTGCAAGATACAA+TGG - chr3_4:67469558-67469577 Msa0516040:CDS 35.0%
TTTATCATTGGTCGAAGATG+AGG - chr3_4:67469609-67469628 Msa0516040:CDS 35.0%
! TCTAGCATAAGTTGAGAACA+CGG + chr3_4:67469891-67469910 None:intergenic 35.0%
GTTCTCAACTTATGCTAGAT+TGG - chr3_4:67469892-67469911 Msa0516040:intron 35.0%
AATTCCAAGGCAGAGATATA+TGG + chr3_4:67469929-67469948 None:intergenic 35.0%
ATCAAATTACATCCCTTGGA+TGG + chr3_4:67469958-67469977 None:intergenic 35.0%
ATTCACTTGTGTTTATCTGC+TGG - chr3_4:67470011-67470030 Msa0516040:intron 35.0%
TAAGGTACACAAGGTAATCA+AGG + chr3_4:67470138-67470157 None:intergenic 35.0%
CTACATTCACTGTTAGGATT+TGG + chr3_4:67470229-67470248 None:intergenic 35.0%
ATAAATATAGTGTGGGGTTG+AGG - chr3_4:67470327-67470346 Msa0516040:intron 35.0%
! GACTTGAGAATTTTGCAACT+TGG - chr3_4:67470349-67470368 Msa0516040:intron 35.0%
TTATCACAGCTAATGAGAGT+AGG - chr3_4:67470407-67470426 Msa0516040:intron 35.0%
TATCACAGCTAATGAGAGTA+GGG - chr3_4:67470408-67470427 Msa0516040:intron 35.0%
AATAACCCATACATGACTAG+CGG + chr3_4:67470447-67470466 None:intergenic 35.0%
!!! ATTTTTTATCGGGTAAGGCT+TGG - chr3_4:67470633-67470652 Msa0516040:CDS 35.0%
AATCTCACTTCCTATACTAG+GGG + chr3_4:67471040-67471059 None:intergenic 35.0%
CAATCTCACTTCCTATACTA+GGG + chr3_4:67471041-67471060 None:intergenic 35.0%
TCAATCTCACTTCCTATACT+AGG + chr3_4:67471042-67471061 None:intergenic 35.0%
!!! TTTTCCATTGATGATGCAGA+AGG - chr3_4:67471131-67471150 Msa0516040:intron 35.0%
CATCATGGAAAGCTAAGTTA+AGG + chr3_4:67471157-67471176 None:intergenic 35.0%
! TAACTTAGCTTTCCATGATG+TGG - chr3_4:67471157-67471176 Msa0516040:intron 35.0%
!! CTTTAAGGTTATCCACATCA+TGG + chr3_4:67471172-67471191 None:intergenic 35.0%
CATGATGTGGATAACCTTAA+AGG - chr3_4:67471170-67471189 Msa0516040:intron 35.0%
AGTACAGAATGAGGTAAGAT+CGG - chr3_4:67471343-67471362 Msa0516040:intron 35.0%
TTTCACATACATAATCAGGC+AGG - chr3_4:67471397-67471416 Msa0516040:intron 35.0%
AAGATGTATATTTCAGCTGG+TGG - chr3_4:67471488-67471507 Msa0516040:intron 35.0%
TTTGCCGACACAATAAATTG+AGG + chr3_4:67471635-67471654 None:intergenic 35.0%
! AATTTATTGTGTCGGCAAAC+CGG - chr3_4:67471636-67471655 Msa0516040:CDS 35.0%
!!! TATTTTTCTCTTTGGTGCTC+GGG - chr3_4:67471750-67471769 Msa0516040:CDS 35.0%
GATGAGATGAGAATGAGATG+AGG + chr3_4:67465971-67465990 None:intergenic 40.0%
!! GTGTATGATTCTAGGGTAGA+TGG - chr3_4:67466288-67466307 Msa0516040:CDS 40.0%
!! ATTCTAGGGTAGATGGTATG+CGG - chr3_4:67466295-67466314 Msa0516040:CDS 40.0%
TTCCTCCGAACGTAATTGAA+TGG + chr3_4:67466361-67466380 None:intergenic 40.0%
! ATAGGGATGATGGTTGATAC+AGG - chr3_4:67466448-67466467 Msa0516040:intron 40.0%
AGCAGAATCATCCTCTTTGT+GGG + chr3_4:67466518-67466537 None:intergenic 40.0%
!! TCTGCTTGCTATGTTTGTTG+AGG - chr3_4:67466624-67466643 Msa0516040:intron 40.0%
TCTTTAATGTTGCGCGTGTT+TGG - chr3_4:67466905-67466924 Msa0516040:intron 40.0%
CTTTAATGTTGCGCGTGTTT+GGG - chr3_4:67466906-67466925 Msa0516040:intron 40.0%
CTTCTTGGGGTTCTTATCTT+TGG - chr3_4:67467004-67467023 Msa0516040:intron 40.0%
! GGTTCTTATCTTTGGAGGTT+TGG - chr3_4:67467012-67467031 Msa0516040:intron 40.0%
!! TGGAGGTTTGGTTATTTCTG+AGG - chr3_4:67467024-67467043 Msa0516040:intron 40.0%
! TACCAAATGACGGGAGTTAA+TGG - chr3_4:67467185-67467204 Msa0516040:intron 40.0%
TTCCATTAACTCCCGTCATT+TGG + chr3_4:67467190-67467209 None:intergenic 40.0%
! TGTATCCGACTTGATCTAGT+GGG + chr3_4:67467268-67467287 None:intergenic 40.0%
! ATGTATCCGACTTGATCTAG+TGG + chr3_4:67467269-67467288 None:intergenic 40.0%
! AAGGGCTTATAGTGGAAGAA+TGG - chr3_4:67467341-67467360 Msa0516040:intron 40.0%
! ATAGTGGAAGAATGGTTGTG+TGG - chr3_4:67467349-67467368 Msa0516040:intron 40.0%
GAAGATGAAAGACTTAGCTG+TGG - chr3_4:67467457-67467476 Msa0516040:intron 40.0%
CTGTGGGTATTCAAGCTTTA+GGG - chr3_4:67467474-67467493 Msa0516040:intron 40.0%
! TGTGGGTATTCAAGCTTTAG+GGG - chr3_4:67467475-67467494 Msa0516040:intron 40.0%
TAACATTCTAGCAAGCAACG+AGG + chr3_4:67467600-67467619 None:intergenic 40.0%
GCCCCAAGCAAAGAAAAAAT+AGG - chr3_4:67467799-67467818 Msa0516040:intron 40.0%
AATTCTCAAGGCAACAGAAC+AGG + chr3_4:67468491-67468510 None:intergenic 40.0%
CTAGACCCCTTGAATGAAAT+AGG + chr3_4:67468769-67468788 None:intergenic 40.0%
CTATTTCATTCAAGGGGTCT+AGG - chr3_4:67468767-67468786 Msa0516040:CDS 40.0%
AGGTGAAACATATCAGCAGA+CGG - chr3_4:67468859-67468878 Msa0516040:intron 40.0%
ACGGTTATCAACCAAAACAG+CGG + chr3_4:67468945-67468964 None:intergenic 40.0%
TTCCGCTCATCACTTCTATT+AGG + chr3_4:67469432-67469451 None:intergenic 40.0%
GGAAGAGAATTGAGAATGCT+GGG - chr3_4:67469448-67469467 Msa0516040:CDS 40.0%
GAAGAGAATTGAGAATGCTG+GGG - chr3_4:67469449-67469468 Msa0516040:CDS 40.0%
AAGAGAATTGAGAATGCTGG+GGG - chr3_4:67469450-67469469 Msa0516040:CDS 40.0%
TGGATGGACAGAAAATTCCA+AGG + chr3_4:67469942-67469961 None:intergenic 40.0%
! TGGAATTTTCTGTCCATCCA+AGG - chr3_4:67469942-67469961 Msa0516040:intron 40.0%
! GGAATTTTCTGTCCATCCAA+GGG - chr3_4:67469943-67469962 Msa0516040:intron 40.0%
CAACAAATGGCTTCAGCATA+CGG + chr3_4:67470090-67470109 None:intergenic 40.0%
TCAGGTTCTGCTACAACAAA+TGG + chr3_4:67470103-67470122 None:intergenic 40.0%
AGAAGTGACAAGTGAGAGAA+AGG - chr3_4:67470373-67470392 Msa0516040:intron 40.0%
ATCACAGCTAATGAGAGTAG+GGG - chr3_4:67470409-67470428 Msa0516040:intron 40.0%
ATCAACTTCTGGCCATTTGT+CGG + chr3_4:67470507-67470526 None:intergenic 40.0%
! ACAAATGGCCAGAAGTTGAT+AGG - chr3_4:67470507-67470526 Msa0516040:intron 40.0%
TGAACAAGCCTATCAACTTC+TGG + chr3_4:67470518-67470537 None:intergenic 40.0%
! TTTTCTTGCTAAAGTGGGGA+GGG + chr3_4:67471096-67471115 None:intergenic 40.0%
ACACAGATGATGTCCCTTTA+AGG + chr3_4:67471187-67471206 None:intergenic 40.0%
CCTGGTCCTGAAAATATATG+AGG + chr3_4:67471268-67471287 None:intergenic 40.0%
!! CCTCATATATTTTCAGGACC+AGG - chr3_4:67471265-67471284 Msa0516040:intron 40.0%
CAGTTTCTTCATCTATCTCC+TGG + chr3_4:67471286-67471305 None:intergenic 40.0%
GGAGATAGATGAAGAAACTG+AGG - chr3_4:67471286-67471305 Msa0516040:intron 40.0%
TGAAAGCAACAAGCAATGCA+GGG + chr3_4:67471382-67471401 None:intergenic 40.0%
GGGGAATTGACAATAGGATT+AGG + chr3_4:67471540-67471559 None:intergenic 40.0%
TACATGGGGGAATTGACAAT+AGG + chr3_4:67471546-67471565 None:intergenic 40.0%
AGAAACAGCATCCTGATCAA+AGG + chr3_4:67471800-67471819 None:intergenic 40.0%
!! CTAGCTGTACTAGCTTTATC+AGG + chr3_4:67471955-67471974 None:intergenic 40.0%
AGATGAGAATGAGATGAGGG+TGG + chr3_4:67465967-67465986 None:intergenic 45.0%
!!! TGCGGAATTTTGATTCGAGC+TGG - chr3_4:67466313-67466332 Msa0516040:CDS 45.0%
TGCCATTCAATTACGTTCGG+AGG - chr3_4:67466356-67466375 Msa0516040:CDS 45.0%
GAGCAGAATCATCCTCTTTG+TGG + chr3_4:67466519-67466538 None:intergenic 45.0%
!!! GCTCGTTCTGGTTTTGTTAC+TGG - chr3_4:67466535-67466554 Msa0516040:intron 45.0%
!!! CGTTCTGGTTTTGTTACTGG+TGG - chr3_4:67466538-67466557 Msa0516040:intron 45.0%
! TTGTTACTGGTGGATGCAAG+AGG - chr3_4:67466548-67466567 Msa0516040:intron 45.0%
ATCTCGGCAACAAAGATGAG+AGG + chr3_4:67466663-67466682 None:intergenic 45.0%
!! AGGATCGAAGTATTGGCTGT+TGG - chr3_4:67466873-67466892 Msa0516040:CDS 45.0%
!! GGATCGAAGTATTGGCTGTT+GGG - chr3_4:67466874-67466893 Msa0516040:CDS 45.0%
!! GATCGAAGTATTGGCTGTTG+GGG - chr3_4:67466875-67466894 Msa0516040:CDS 45.0%
!! ATCGAAGTATTGGCTGTTGG+GGG - chr3_4:67466876-67466895 Msa0516040:CDS 45.0%
CTTGGGGTTCTTATCTTTGG+AGG - chr3_4:67467007-67467026 Msa0516040:intron 45.0%
GCTGTGGGTATTCAAGCTTT+AGG - chr3_4:67467473-67467492 Msa0516040:intron 45.0%
!! GTGGGTATTCAAGCTTTAGG+GGG - chr3_4:67467476-67467495 Msa0516040:intron 45.0%
GGTTGTATGTCATGTTCCTG+TGG - chr3_4:67467896-67467915 Msa0516040:intron 45.0%
CTGCTTAGGATTTACACCAC+AGG + chr3_4:67467915-67467934 None:intergenic 45.0%
TTCAAGAAGCAGGCATGTCA+GGG + chr3_4:67468210-67468229 None:intergenic 45.0%
ATTCAAGAAGCAGGCATGTC+AGG + chr3_4:67468211-67468230 None:intergenic 45.0%
CCTTGCCGTGCATTGAAAAA+TGG + chr3_4:67468279-67468298 None:intergenic 45.0%
!! CCATTTTTCAATGCACGGCA+AGG - chr3_4:67468276-67468295 Msa0516040:intron 45.0%
GCTTAACGAAACTAGGGAAG+TGG - chr3_4:67468407-67468426 Msa0516040:intron 45.0%
! TAGGGAAGTGGCTGCTATTT+GGG - chr3_4:67468419-67468438 Msa0516040:intron 45.0%
AACAGAACAGGTGACCTTTG+TGG + chr3_4:67468479-67468498 None:intergenic 45.0%
ATATTCCATGCAGGTCATGG+TGG - chr3_4:67468527-67468546 Msa0516040:intron 45.0%
GCTGATATGTTTCACCTGCA+AGG + chr3_4:67468856-67468875 None:intergenic 45.0%
! TACTGCTTCAACCGCTGTTT+TGG - chr3_4:67468931-67468950 Msa0516040:intron 45.0%
CGGAAGAGAATTGAGAATGC+TGG - chr3_4:67469447-67469466 Msa0516040:CDS 45.0%
TGTGCAAGATACAATGGGGT+TGG - chr3_4:67469564-67469583 Msa0516040:CDS 45.0%
GATGACATCGGAAGTTTGTG+CGG - chr3_4:67469648-67469667 Msa0516040:intron 45.0%
ATGACATCGGAAGTTTGTGC+GGG - chr3_4:67469649-67469668 Msa0516040:intron 45.0%
TGCTCCATATATCTCTGCCT+TGG - chr3_4:67469922-67469941 Msa0516040:intron 45.0%
CTTGTGTTTATCTGCTGGTC+AGG - chr3_4:67470016-67470035 Msa0516040:intron 45.0%
TTATCTGCTGGTCAGGTACT+TGG - chr3_4:67470023-67470042 Msa0516040:intron 45.0%
TGTAGCAGAACCTGAAATCC+AGG - chr3_4:67470108-67470127 Msa0516040:intron 45.0%
TCAAGGATCACCTGGATTTC+AGG + chr3_4:67470121-67470140 None:intergenic 45.0%
CAAGGTAATCAAGGATCACC+TGG + chr3_4:67470129-67470148 None:intergenic 45.0%
! AATGTGCCGCTAGTCATGTA+TGG - chr3_4:67470438-67470457 Msa0516040:intron 45.0%
! ATGTGCCGCTAGTCATGTAT+GGG - chr3_4:67470439-67470458 Msa0516040:intron 45.0%
ACCAAAAGACCACCGACAAA+TGG - chr3_4:67470492-67470511 Msa0516040:intron 45.0%
TAGATCATACACGCATGTGC+TGG + chr3_4:67470563-67470582 None:intergenic 45.0%
ACTTCCTATACTAGGGGACA+TGG + chr3_4:67471034-67471053 None:intergenic 45.0%
! GTTTTCTTGCTAAAGTGGGG+AGG + chr3_4:67471097-67471116 None:intergenic 45.0%
AAGGCCTTCTGCATCATCAA+TGG + chr3_4:67471138-67471157 None:intergenic 45.0%
GTGCTTGTTCTTGCAAGTGA+TGG - chr3_4:67471308-67471327 Msa0516040:intron 45.0%
!! TTCTTGCAAGTGATGGACTC+TGG - chr3_4:67471315-67471334 Msa0516040:intron 45.0%
!! TCTTGCAAGTGATGGACTCT+GGG - chr3_4:67471316-67471335 Msa0516040:intron 45.0%
CTGGGATGTAGTACAGAATG+AGG - chr3_4:67471334-67471353 Msa0516040:intron 45.0%
GTGAAAGCAACAAGCAATGC+AGG + chr3_4:67471383-67471402 None:intergenic 45.0%
TCCTTACTTCTGTGCTAGAG+CGG - chr3_4:67471698-67471717 Msa0516040:CDS 45.0%
CACTTTGCCATCCTTTGATC+AGG - chr3_4:67471786-67471805 Msa0516040:CDS 45.0%
ACAGCATCCTGATCAAAGGA+TGG + chr3_4:67471796-67471815 None:intergenic 45.0%
!!! ACGGAAGCTGCTTTTAATCG+TGG - chr3_4:67471865-67471884 Msa0516040:CDS 45.0%
AAGAGTCTGCACATGCATGA+TGG - chr3_4:67472050-67472069 Msa0516040:five_prime_UTR 45.0%
TGAGAATGAGATGAGGGTGG+AGG + chr3_4:67465964-67465983 None:intergenic 50.0%
GGTTCTATGTCAACAAGGGC+TGG - chr3_4:67466469-67466488 Msa0516040:intron 50.0%
GACACAGTATCCTCCACAGA+GGG + chr3_4:67466496-67466515 None:intergenic 50.0%
GGATACTGTGTCCCACAAAG+AGG - chr3_4:67466504-67466523 Msa0516040:intron 50.0%
GAGGATGATTCTGCTCGTTC+TGG - chr3_4:67466523-67466542 Msa0516040:intron 50.0%
TGATCTAGTGGGAAGGGCTA+TGG + chr3_4:67467257-67467276 None:intergenic 50.0%
! CCGACTTGATCTAGTGGGAA+GGG + chr3_4:67467263-67467282 None:intergenic 50.0%
CCCTTCCCACTAGATCAAGT+CGG - chr3_4:67467260-67467279 Msa0516040:intron 50.0%
! TCCGACTTGATCTAGTGGGA+AGG + chr3_4:67467264-67467283 None:intergenic 50.0%
GGCCGTTCAGTGTGCTTATT+TGG - chr3_4:67467550-67467569 Msa0516040:intron 50.0%
ATTCTAGCAAGCAACGAGGC+TGG + chr3_4:67467596-67467615 None:intergenic 50.0%
!! AGAAGAGGGCGTTGAGGATT+TGG + chr3_4:67468243-67468262 None:intergenic 50.0%
!! GATATGAGAAGAGGGCGTTG+AGG + chr3_4:67468249-67468268 None:intergenic 50.0%
CTAGGGAAGTGGCTGCTATT+TGG - chr3_4:67468418-67468437 Msa0516040:intron 50.0%
! AGGGAAGTGGCTGCTATTTG+GGG - chr3_4:67468420-67468439 Msa0516040:intron 50.0%
TCGCGCTGCTGAGTATTTGA+AGG - chr3_4:67468553-67468572 Msa0516040:intron 50.0%
! TCATTCAAGGGGTCTAGGGT+TGG - chr3_4:67468772-67468791 Msa0516040:CDS 50.0%
AAGCAGTAGAACCGTCATCC+CGG + chr3_4:67468919-67468938 None:intergenic 50.0%
GGTTTCCTTGCCTGCTCTTT+GGG - chr3_4:67469281-67469300 Msa0516040:CDS 50.0%
AAGAACCCAAAGAGCAGGCA+AGG + chr3_4:67469289-67469308 None:intergenic 50.0%
AACGCAAGAACCCAAAGAGC+AGG + chr3_4:67469294-67469313 None:intergenic 50.0%
TGTCATGTGGGCAGGTAACT+TGG - chr3_4:67469476-67469495 Msa0516040:CDS 50.0%
CTAGCAATGTCCCGTGCATT+TGG - chr3_4:67470061-67470080 Msa0516040:intron 50.0%
CATACGGTTGCCAAATGCAC+GGG + chr3_4:67470074-67470093 None:intergenic 50.0%
GCATACGGTTGCCAAATGCA+CGG + chr3_4:67470075-67470094 None:intergenic 50.0%
! GCCATTTGTCGGTGGTCTTT+TGG + chr3_4:67470496-67470515 None:intergenic 50.0%
AACTTCTGGCCATTTGTCGG+TGG + chr3_4:67470504-67470523 None:intergenic 50.0%
GAACTGGAGCGATAGCGATT+TGG + chr3_4:67470541-67470560 None:intergenic 50.0%
ATACACGCATGTGCTGGAAC+TGG + chr3_4:67470557-67470576 None:intergenic 50.0%
GAAGCCATGTCCCCTAGTAT+AGG - chr3_4:67471027-67471046 Msa0516040:intron 50.0%
TCCGCTCTAGCACAGAAGTA+AGG + chr3_4:67471702-67471721 None:intergenic 50.0%
GGCAGCTGCTCGTAAGTTAA+CGG - chr3_4:67471846-67471865 Msa0516040:CDS 50.0%
GGACACAGTATCCTCCACAG+AGG + chr3_4:67466497-67466516 None:intergenic 55.0%
TAGGGGGAAGAGAGTGACCA+TGG - chr3_4:67467492-67467511 Msa0516040:intron 55.0%
GCACACTGAACGGCCATCAA+TGG + chr3_4:67467545-67467564 None:intergenic 55.0%
!! AGAGGGCGTTGAGGATTTGG+TGG + chr3_4:67468240-67468259 None:intergenic 55.0%
GAGAACCACCATGACCTGCA+TGG + chr3_4:67468535-67468554 None:intergenic 55.0%
!! AGGGGTCTAGGGTTGGTTCA+TGG - chr3_4:67468779-67468798 Msa0516040:CDS 55.0%
GGGTTTCCTTGCCTGCTCTT+TGG - chr3_4:67469280-67469299 Msa0516040:CDS 55.0%
!! ATGCTGGGGGTGTTGTCATG+TGG - chr3_4:67469463-67469482 Msa0516040:CDS 55.0%
!! TGCTGGGGGTGTTGTCATGT+GGG - chr3_4:67469464-67469483 Msa0516040:CDS 55.0%
TCTGCTGGTCAGGTACTTGG+AGG - chr3_4:67470026-67470045 Msa0516040:intron 55.0%
CTGCTGGTCAGGTACTTGGA+GGG - chr3_4:67470027-67470046 Msa0516040:intron 55.0%
TGGTCAGGTACTTGGAGGGT+TGG - chr3_4:67470031-67470050 Msa0516040:intron 55.0%
TCAGGTACTTGGAGGGTTGG+AGG - chr3_4:67470034-67470053 Msa0516040:intron 55.0%
CAGGTACTTGGAGGGTTGGA+GGG - chr3_4:67470035-67470054 Msa0516040:intron 55.0%
AGGTACTTGGAGGGTTGGAG+GGG - chr3_4:67470036-67470055 Msa0516040:intron 55.0%
CAAGCAATGCAGGGCTGAGA+AGG + chr3_4:67471373-67471392 None:intergenic 55.0%
GGCTTGTAGAGGCTCCAGTT+TGG - chr3_4:67472210-67472229 Msa0516040:five_prime_UTR 55.0%
AACAAGGGCTGGACCCTCTG+TGG - chr3_4:67466480-67466499 Msa0516040:intron 60.0%
!! GTATTGGCTGTTGGGGGTCG+TGG - chr3_4:67466882-67466901 Msa0516040:CDS 60.0%
GGGGAAGAGAGTGACCATGG+AGG - chr3_4:67467495-67467514 Msa0516040:intron 60.0%
!! TGCTGTTTCTCTCGCACGCG+CGG - chr3_4:67471810-67471829 Msa0516040:CDS 60.0%
AAGGGCTGGACCCTCTGTGG+AGG - chr3_4:67466483-67466502 Msa0516040:intron 65.0%
!! GGGGGTGTTGTCATGTGGGC+AGG - chr3_4:67469468-67469487 Msa0516040:CDS 65.0%
TTCTCTCGCACGCGCGGAAG+AGG - chr3_4:67471816-67471835 Msa0516040:CDS 65.0%
TCTCTCGCACGCGCGGAAGA+GGG - chr3_4:67471817-67471836 Msa0516040:CDS 65.0%
ACGCGCGGAAGAGGGAGCTG+AGG - chr3_4:67471825-67471844 Msa0516040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 67465917 67472284 67465917 ID=Msa0516040;Name=Msa0516040
chr3_4 mRNA 67465917 67472284 67465917 ID=Msa0516040-mRNA-1;Parent=Msa0516040;Name=Msa0516040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=289|1|1|1|0.75|0.44|9|263|438
chr3_4 exon 67465917 67466171 67465917 ID=Msa0516040-mRNA-1:exon:17562;Parent=Msa0516040-mRNA-1
chr3_4 exon 67466194 67466393 67466194 ID=Msa0516040-mRNA-1:exon:17561;Parent=Msa0516040-mRNA-1
chr3_4 exon 67466846 67466920 67466846 ID=Msa0516040-mRNA-1:exon:17560;Parent=Msa0516040-mRNA-1
chr3_4 exon 67468072 67468163 67468072 ID=Msa0516040-mRNA-1:exon:17559;Parent=Msa0516040-mRNA-1
chr3_4 exon 67468712 67468798 67468712 ID=Msa0516040-mRNA-1:exon:17558;Parent=Msa0516040-mRNA-1
chr3_4 exon 67469182 67469661 67469182 ID=Msa0516040-mRNA-1:exon:17557;Parent=Msa0516040-mRNA-1
chr3_4 exon 67470618 67470745 67470618 ID=Msa0516040-mRNA-1:exon:17556;Parent=Msa0516040-mRNA-1
chr3_4 exon 67471632 67471899 67471632 ID=Msa0516040-mRNA-1:exon:17555;Parent=Msa0516040-mRNA-1
chr3_4 exon 67472001 67472284 67472001 ID=Msa0516040-mRNA-1:exon:17554;Parent=Msa0516040-mRNA-1
chr3_4 five_prime_UTR 67472001 67472284 67472001 ID=Msa0516040-mRNA-1:five_prime_utr;Parent=Msa0516040-mRNA-1
chr3_4 five_prime_UTR 67471895 67471899 67471895 ID=Msa0516040-mRNA-1:five_prime_utr;Parent=Msa0516040-mRNA-1
chr3_4 CDS 67471632 67471894 67471632 ID=Msa0516040-mRNA-1:cds;Parent=Msa0516040-mRNA-1
chr3_4 CDS 67470618 67470745 67470618 ID=Msa0516040-mRNA-1:cds;Parent=Msa0516040-mRNA-1
chr3_4 CDS 67469182 67469661 67469182 ID=Msa0516040-mRNA-1:cds;Parent=Msa0516040-mRNA-1
chr3_4 CDS 67468712 67468798 67468712 ID=Msa0516040-mRNA-1:cds;Parent=Msa0516040-mRNA-1
chr3_4 CDS 67468072 67468163 67468072 ID=Msa0516040-mRNA-1:cds;Parent=Msa0516040-mRNA-1
chr3_4 CDS 67466846 67466920 67466846 ID=Msa0516040-mRNA-1:cds;Parent=Msa0516040-mRNA-1
chr3_4 CDS 67466202 67466393 67466202 ID=Msa0516040-mRNA-1:cds;Parent=Msa0516040-mRNA-1
chr3_4 three_prime_UTR 67466194 67466201 67466194 ID=Msa0516040-mRNA-1:three_prime_utr;Parent=Msa0516040-mRNA-1
chr3_4 three_prime_UTR 67465917 67466171 67465917 ID=Msa0516040-mRNA-1:three_prime_utr;Parent=Msa0516040-mRNA-1
Gene Sequence

>Msa0516040

ATGGTATGCGGAATTTTGATTCGAGCTGGAATTTTGACCAAGAGATTGTTGCCATTCAATTACGTTCGGAGGAAGTGTTTGCAAAGAGTTTTTGTTGTTCATTCACAATTTGTTGCGAATCGCGTGTTTAAGAATAAGTACATAGGGATGATGGTTGATACAGGTTCTATGTCAACAAGGGCTGGACCCTCTGTGGAGGATACTGTGTCCCACAAAGAGGATGATTCTGCTCGTTCTGGTTTTGTTACTGGTGGATGCAAGAGTGAAGATGAAAGACTTAGCTGTGGGTATTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAGGATTTCTATGATATTAAGACATCAACCATTGATGGCCGTTCAGTGTGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGCGCTGCTGAGTATTTGAAGGATCATCTTTTTGAGAATCTCATGAAGCATCCGAAGTTTTTGACAGATACCAAATTGGCTATAAGTGTGTTTGAATTTCACTTATTATTTCTTGTAATATTGAAGACATGTCACTTTTTACCATTTGTTTATACGTTCTTGTCAAATCTGACATCATCGGAACCATTTGAGTATGCATTTATTGTGTTAGTCCTATTTCATTCAAGGGGTCTAGGGTTGGTTCATGGAGTGCTTTTCATTTTTCAGTCTGTTATGTGGATGTTTATTAACTTAAGTAACCTTGCAGGTGAAACATATCAGCAGACGGATGCTGAGTTTTTGAACTCTGAAAAAGATAATTTCCGGGATGACGGTTCTACTGCTTCAACCGCTGTTTTGGTTGATAACCGTCTTTATGTTGCTAATGTTGGAGATTCTAGAACTGTTATATCAAAAGCCGGAAAAGCAATTGCTCTCTCTGAAGATCATAAACCTAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCCCGTGCATTTGGCAACCGTATGCTGAAGCCATTTGTTGTAGCAGAACCTGAAATCCAGGACCAGGAGATAGATGAAGAAACTGAGGTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAGGATGCTGTTTCTCTCGCACGCGCGGAAGAGGGAGCTGAGGCAGCTGCTCGTAAGTTAACGGAAGCTGCTTTTAATCGTGGTAGTGCAGATAACATTACTTGTATTGTGGTACGATTCAATCATGAAAAAAGACACGCAGCTAATCCTGATAAAGCTAGTACAGCTAGCAGTCAGCATGAGCAGAGACAATGA
Protein sequence

>Msa0516040

MVCGILIRAGILTKRLLPFNYVRRKCLQRVFVVHSQFVANRVFKNKYIGMMVDTGSMSTRAGPSVEDTVSHKEDDSARSGFVTGGCKSEDERLSCGYSSFRGKRVTMEDFYDIKTSTIDGRSVCLFGIFDGHGGSRAAEYLKDHLFENLMKHPKFLTDTKLAISVFEFHLLFLVILKTCHFLPFVYTFLSNLTSSEPFEYAFIVLVLFHSRGLGLVHGVLFIFQSVMWMFINLSNLAGETYQQTDAEFLNSEKDNFRDDGSTASTAVLVDNRLYVANVGDSRTVISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQEIDEETEVLVLASDGLWDVVQNEDAVSLARAEEGAEAAARKLTEAAFNRGSADNITCIVVRFNHEKRHAANPDKASTASSQHEQRQ*