AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376040 MtrunA17_Chr3g0126511 93.182 220 12 2 222 438 145 364 2.89e-142 410
Msa0376040 MtrunA17_Chr3g0126511 97.561 164 4 0 1 164 1 164 2.70e-115 342
Msa0376040 MtrunA17_Chr3g0136711 64.205 176 63 0 239 414 105 280 3.77e-78 244
Msa0376040 MtrunA17_Chr3g0136711 56.471 85 37 0 80 164 20 104 1.19e-25 106
Msa0376040 MtrunA17_Chr1g0150451 64.773 176 62 0 239 414 148 323 3.83e-78 246
Msa0376040 MtrunA17_Chr1g0150451 48.214 112 51 2 53 164 43 147 1.67e-26 109
Msa0376040 MtrunA17_Chr1g0212961 61.017 177 65 2 239 415 166 338 1.44e-70 226
Msa0376040 MtrunA17_Chr1g0212961 42.405 158 62 4 26 163 16 164 1.12e-27 112
Msa0376040 MtrunA17_Chr4g0050381 35.088 342 141 10 77 414 12 276 1.84e-47 164
Msa0376040 MtrunA17_Chr2g0279151 48.045 179 87 4 239 414 105 280 3.93e-44 155
Msa0376040 MtrunA17_Chr3g0115851 44.134 179 94 4 239 414 106 281 9.60e-42 149
Msa0376040 MtrunA17_Chr4g0070871 47.191 178 68 4 260 412 325 501 3.05e-40 150
Msa0376040 MtrunA17_Chr3g0112291 44.624 186 80 4 260 423 200 384 5.74e-40 147
Msa0376040 MtrunA17_Chr3g0105351 40.437 183 98 3 241 416 138 316 7.35e-40 145
Msa0376040 MtrunA17_Chr3g0105371 41.530 183 96 3 241 416 162 340 1.23e-39 145
Msa0376040 MtrunA17_Chr5g0426141 44.134 179 94 4 239 414 106 281 1.38e-39 143
Msa0376040 MtrunA17_Chr8g0360351 45.506 178 91 4 241 415 108 282 3.19e-38 140
Msa0376040 MtrunA17_Chr1g0150781 44.809 183 78 3 260 420 368 549 3.33e-38 145
Msa0376040 MtrunA17_Chr5g0430481 41.530 183 96 3 241 416 198 376 3.35e-38 142
Msa0376040 MtrunA17_Chr2g0317021 44.262 183 96 4 235 414 153 332 1.09e-36 137
Msa0376040 MtrunA17_Chr3g0135961 44.505 182 78 4 260 419 364 544 2.40e-36 140
Msa0376040 MtrunA17_Chr2g0299981 41.758 182 83 3 260 419 360 540 9.57e-36 138
Msa0376040 MtrunA17_Chr5g0435721 54.839 124 54 2 260 382 298 420 4.11e-35 135
Msa0376040 MtrunA17_Chr1g0150071 29.412 374 192 12 89 433 18 348 7.73e-33 127
Msa0376040 MtrunA17_Chr8g0389921 39.024 205 104 6 241 428 248 448 1.80e-32 128
Msa0376040 MtrunA17_Chr4g0051661 39.698 199 110 6 222 414 203 397 4.82e-32 125
Msa0376040 MtrunA17_Chr1g0171571 44.872 156 83 3 260 412 487 642 1.15e-31 127
Msa0376040 MtrunA17_Chr5g0396731 40.909 176 83 3 260 415 177 351 9.29e-30 118
Msa0376040 MtrunA17_Chr3g0144111 38.095 189 101 6 241 418 48 231 1.11e-29 116
Msa0376040 MtrunA17_Chr1g0158781 45.029 171 74 4 260 412 209 377 2.25e-28 115
Msa0376040 MtrunA17_Chr4g0001761 28.448 348 194 13 89 416 18 330 1.20e-27 113
Msa0376040 MtrunA17_Chr2g0293811 33.188 229 120 7 212 412 106 329 1.25e-27 113
Msa0376040 MtrunA17_Chr5g0407161 31.933 238 137 7 197 417 119 348 2.08e-27 112
Msa0376040 MtrunA17_Chr3g0136811 37.113 194 101 5 260 435 160 350 9.01e-26 107
Msa0376040 MtrunA17_Chr4g0065141 32.836 201 118 4 231 417 156 353 3.23e-25 106
Msa0376040 MtrunA17_Chr1g0194191 33.889 180 103 4 260 426 188 364 1.78e-24 104
Msa0376040 MtrunA17_Chr3g0138281 33.166 199 118 5 231 417 153 348 6.74e-23 99.8
Msa0376040 MtrunA17_Chr6g0483411 32.995 197 109 5 241 416 126 320 4.35e-22 96.3
Msa0376040 MtrunA17_Chr7g0272061 32.323 198 110 6 239 412 162 359 2.03e-18 86.7
Msa0376040 MtrunA17_Chr1g0192421 30.622 209 116 7 235 415 144 351 3.07e-18 85.9
Msa0376040 MtrunA17_Chr4g0067711 31.285 179 103 6 239 399 154 330 1.47e-17 84.0
Msa0376040 MtrunA17_Chr2g0295401 31.414 191 105 7 254 420 171 359 3.53e-17 82.8
Msa0376040 MtrunA17_Chr1g0185141 29.204 226 102 7 245 412 211 436 2.50e-16 81.6
Msa0376040 MtrunA17_Chr1g0209451 33.516 182 105 7 246 412 115 295 3.61e-16 80.1
Msa0376040 MtrunA17_Chr1g0187481 30.519 154 90 2 262 415 142 278 1.64e-15 76.6
Msa0376040 MtrunA17_Chr7g0256751 29.902 204 104 8 244 409 116 318 1.66e-15 78.2
Msa0376040 MtrunA17_Chr8g0371321 28.141 199 104 5 239 399 120 317 1.69e-15 77.8
Msa0376040 MtrunA17_Chr1g0153671 32.474 194 116 6 246 424 112 305 2.78e-15 77.4
Msa0376040 MtrunA17_Chr7g0263281 27.350 234 110 6 241 415 114 346 3.68e-15 76.6
Msa0376040 MtrunA17_Chr1g0213351 28.431 204 107 5 234 399 116 318 6.28e-15 76.3
Msa0376040 MtrunA17_Chr1g0151781 35.526 152 81 4 245 380 137 287 8.33e-15 75.5
Msa0376040 MtrunA17_Chr7g0256771 31.461 178 81 7 244 382 117 292 1.41e-14 74.3
Msa0376040 MtrunA17_Chr1g0207571 29.775 178 90 4 260 403 129 305 1.43e-14 75.1
Msa0376040 MtrunA17_Chr4g0004971 32.051 156 88 4 260 398 166 320 1.58e-14 74.7
Msa0376040 MtrunA17_Chr7g0221691 31.841 201 109 6 260 434 232 430 1.97e-14 75.1
Msa0376040 MtrunA17_Chr7g0249421 35.897 156 82 4 260 398 207 361 4.65e-14 73.9
Msa0376040 MtrunA17_Chr1g0175381 26.794 209 102 5 260 417 147 355 4.73e-14 73.6
Msa0376040 MtrunA17_Chr4g0022171 31.073 177 104 4 239 398 172 347 6.78e-14 73.6
Msa0376040 MtrunA17_Chr2g0324061 32.768 177 101 4 239 398 165 340 8.18e-14 73.2
Msa0376040 MtrunA17_Chr7g0243571 32.903 155 87 4 260 398 188 341 1.09e-13 72.8
Msa0376040 MtrunA17_Chr7g0250061 27.807 187 98 5 251 403 135 318 1.81e-13 71.6
Msa0376040 MtrunA17_Chr3g0089721 30.178 169 87 4 260 397 137 305 2.30e-13 71.2
Msa0376040 MtrunA17_Chr4g0068971 32.576 132 76 4 300 421 110 238 2.63e-13 70.1
Msa0376040 MtrunA17_Chr8g0342431 35.172 145 75 5 271 398 208 350 4.02e-13 70.9
Msa0376040 MtrunA17_Chr1g0166481 30.968 155 84 4 263 415 141 274 5.43e-13 68.9
Msa0376040 MtrunA17_Chr1g0211251 27.273 165 88 3 260 392 149 313 7.53e-13 69.7
Msa0376040 MtrunA17_Chr1g0181901 25.373 201 101 5 229 380 96 296 7.62e-13 69.7
Msa0376040 MtrunA17_Chr3g0089711 29.586 169 88 4 260 397 137 305 7.94e-13 69.7
Msa0376040 MtrunA17_Chr3g0089691 29.586 169 88 4 260 397 51 219 1.16e-12 68.6
Msa0376040 MtrunA17_Chr4g0066371 27.358 212 115 7 241 414 130 340 1.23e-12 69.3
Msa0376040 MtrunA17_Chr7g0225501 32.927 164 99 6 260 412 154 317 1.94e-12 68.9
Msa0376040 MtrunA17_Chr3g0133801 29.834 181 113 5 246 412 113 293 2.60e-12 68.2
Msa0376040 MtrunA17_Chr5g0394181 33.168 202 106 11 234 415 406 598 2.94e-12 68.6
Msa0376040 MtrunA17_Chr7g0271971 30.270 185 110 7 241 412 117 295 1.33e-11 66.2
Msa0376040 MtrunA17_Chr2g0286951 27.273 209 113 8 244 414 134 341 3.59e-11 64.7
Msa0376040 MtrunA17_Chr1g0192471 27.717 184 116 5 241 412 117 295 5.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376040 AT5G53140.1 72.350 217 57 2 222 435 152 368 2.41e-103 314
Msa0376040 AT5G53140.1 50.279 179 66 6 1 164 1 171 1.57e-43 158
Msa0376040 AT5G53140.2 72.350 217 57 2 222 435 152 368 2.41e-103 314
Msa0376040 AT5G53140.2 50.279 179 66 6 1 164 1 171 1.57e-43 158
Msa0376040 AT4G31750.2 65.909 176 60 0 239 414 104 279 1.92e-78 246
Msa0376040 AT4G31750.2 54.118 85 39 0 80 164 19 103 2.21e-25 105
Msa0376040 AT4G31750.1 59.420 207 71 1 239 432 104 310 2.39e-78 246
Msa0376040 AT4G31750.1 54.118 85 39 0 80 164 19 103 2.91e-25 105
Msa0376040 AT4G31750.3 59.420 207 71 1 239 432 104 310 2.39e-78 246
Msa0376040 AT4G31750.3 54.118 85 39 0 80 164 19 103 2.91e-25 105
Msa0376040 AT5G10740.1 66.477 176 59 0 239 414 104 279 4.76e-77 244
Msa0376040 AT5G10740.1 56.098 82 36 0 83 164 22 103 8.75e-25 105
Msa0376040 AT5G10740.2 66.477 176 59 0 239 414 104 279 4.76e-77 244
Msa0376040 AT5G10740.2 56.098 82 36 0 83 164 22 103 8.75e-25 105
Msa0376040 AT5G24940.1 64.205 176 63 0 239 414 104 279 6.68e-74 239
Msa0376040 AT5G24940.1 57.831 83 35 0 82 164 21 103 2.28e-25 108
Msa0376040 AT1G43900.1 59.659 176 70 1 239 414 194 368 8.79e-70 226
Msa0376040 AT1G43900.1 55.556 72 32 0 92 163 121 192 9.56e-22 96.7
Msa0376040 AT1G78200.1 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0376040 AT1G78200.3 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0376040 AT1G78200.2 33.127 323 138 6 96 414 34 282 2.80e-45 159
Msa0376040 AT1G78200.5 33.119 311 131 5 107 414 1 237 1.83e-44 155
Msa0376040 AT1G78200.4 33.119 311 131 5 107 414 1 237 1.83e-44 155
Msa0376040 AT1G34750.2 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0376040 AT1G34750.2 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0376040 AT1G34750.1 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0376040 AT1G34750.1 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0376040 AT1G34750.3 48.023 177 86 4 241 414 108 281 1.48e-42 152
Msa0376040 AT1G34750.3 37.500 88 54 1 77 163 17 104 6.46e-11 63.5
Msa0376040 AT1G22280.1 45.251 179 92 4 239 414 105 280 4.65e-41 147
Msa0376040 AT1G22280.3 45.251 179 92 4 239 414 111 286 5.14e-41 147
Msa0376040 AT2G20630.1 43.386 189 101 4 230 415 94 279 2.97e-39 143
Msa0376040 AT4G28400.3 43.386 189 101 4 230 415 76 261 5.71e-39 141
Msa0376040 AT4G28400.1 43.386 189 101 4 230 415 98 283 8.61e-39 142
Msa0376040 AT2G30020.1 44.809 183 91 4 241 416 215 394 1.52e-38 144
Msa0376040 AT1G07160.1 42.391 184 95 3 241 416 198 378 3.92e-38 142
Msa0376040 AT2G29380.1 45.349 172 72 3 260 412 190 358 5.18e-37 139
Msa0376040 AT1G72770.4 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0376040 AT1G72770.1 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0376040 AT1G72770.3 43.956 182 79 4 260 419 326 506 5.44e-37 142
Msa0376040 AT2G20630.2 42.553 188 102 4 230 414 94 278 6.04e-37 137
Msa0376040 AT2G40180.1 43.243 185 94 5 239 416 207 387 4.33e-36 137
Msa0376040 AT3G15260.2 44.444 180 94 4 239 415 113 289 6.70e-36 134
Msa0376040 AT3G15260.1 44.444 180 94 4 239 415 113 289 6.70e-36 134
Msa0376040 AT1G17550.1 42.308 182 82 4 260 419 326 506 6.05e-35 136
Msa0376040 AT1G17550.2 42.308 182 82 4 260 419 326 506 6.05e-35 136
Msa0376040 AT4G26080.1 39.378 193 88 3 260 424 241 432 7.07e-35 134
Msa0376040 AT1G07430.1 54.839 124 54 2 260 382 233 355 7.15e-35 135
Msa0376040 AT5G57050.2 42.778 180 75 3 260 412 191 369 8.26e-35 133
Msa0376040 AT5G51760.2 41.709 199 90 3 244 416 185 383 1.40e-34 133
Msa0376040 AT5G51760.1 41.709 199 90 3 244 416 215 413 1.62e-34 133
Msa0376040 AT5G57050.1 42.778 180 75 3 260 412 231 409 1.90e-34 133
Msa0376040 AT5G59220.1 55.645 124 53 2 260 382 221 343 3.21e-34 132
Msa0376040 AT1G67820.2 47.917 144 71 2 239 378 151 294 4.23e-34 132
Msa0376040 AT1G67820.1 47.917 144 71 2 239 378 187 330 9.87e-34 132
Msa0376040 AT3G11410.1 54.032 124 55 2 260 382 221 343 1.30e-33 130
Msa0376040 AT2G40860.1 42.857 196 94 7 234 412 452 646 2.36e-32 130
Msa0376040 AT2G40860.4 42.857 196 94 7 234 412 354 548 2.53e-32 129
Msa0376040 AT3G51470.2 34.685 222 126 5 212 417 68 286 5.72e-32 124
Msa0376040 AT3G51470.1 34.685 222 126 5 212 417 112 330 1.75e-31 124
Msa0376040 AT2G33700.1 34.821 224 123 7 212 417 129 347 2.17e-30 121
Msa0376040 AT1G34750.4 48.951 143 65 5 241 380 108 245 2.27e-30 118
Msa0376040 AT1G34750.4 37.500 88 54 1 77 163 17 104 5.84e-11 63.2
Msa0376040 AT2G25070.1 27.548 363 201 11 89 427 18 342 4.54e-30 120
Msa0376040 AT2G25070.2 27.548 363 201 11 89 427 18 342 4.54e-30 120
Msa0376040 AT4G31860.1 28.919 370 206 12 89 436 18 352 1.89e-29 118
Msa0376040 AT2G34740.1 40.881 159 88 4 260 414 178 334 2.25e-28 115
Msa0376040 AT2G25620.1 37.766 188 98 4 241 412 170 354 8.42e-28 114
Msa0376040 AT2G25620.2 37.766 188 98 4 241 412 170 354 8.42e-28 114
Msa0376040 AT2G40860.2 40.659 182 91 6 234 398 452 633 1.08e-27 116
Msa0376040 AT3G62260.3 40.606 165 86 4 260 414 97 259 1.41e-27 111
Msa0376040 AT3G62260.1 40.606 165 86 4 260 414 186 348 8.93e-27 111
Msa0376040 AT3G62260.2 40.606 165 86 4 260 414 187 349 9.59e-27 111
Msa0376040 AT4G31860.3 30.132 302 164 10 89 378 18 284 3.42e-26 107
Msa0376040 AT4G28400.2 44.138 145 75 4 230 371 98 239 6.99e-26 105
Msa0376040 AT4G31860.2 30.375 293 157 10 89 369 18 275 4.98e-25 104
Msa0376040 AT3G17250.1 35.503 169 93 4 260 415 229 394 2.17e-23 102
Msa0376040 AT1G48040.1 35.955 178 100 4 260 426 187 361 3.23e-23 101
Msa0376040 AT1G18030.1 33.838 198 108 5 239 415 154 349 1.04e-22 99.4
Msa0376040 AT3G16800.4 39.103 156 78 4 260 398 75 230 1.30e-22 97.1
Msa0376040 AT3G16800.6 39.103 156 78 4 260 398 75 230 1.30e-22 97.1
Msa0376040 AT3G16800.2 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0376040 AT3G16800.1 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0376040 AT3G16800.3 39.103 156 78 4 260 398 170 325 7.39e-22 96.7
Msa0376040 AT4G32950.1 34.921 189 96 7 260 424 139 324 1.06e-19 90.1
Msa0376040 AT5G59220.2 60.256 78 29 2 260 336 221 297 2.28e-19 88.6
Msa0376040 AT4G08260.1 34.857 175 92 7 244 412 48 206 2.38e-19 86.7
Msa0376040 AT4G27800.1 30.476 210 106 5 239 411 139 345 2.38e-19 89.7
Msa0376040 AT5G27930.1 33.898 177 99 4 239 398 156 331 3.54e-19 89.4
Msa0376040 AT5G27930.2 33.898 177 99 4 239 398 156 331 3.54e-19 89.4
Msa0376040 AT3G05640.2 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0376040 AT3G05640.1 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0376040 AT3G05640.3 32.338 201 111 7 239 415 151 350 3.75e-19 89.0
Msa0376040 AT1G18030.2 34.899 149 79 3 239 371 154 300 1.34e-18 86.7
Msa0376040 AT2G40860.3 40.278 144 71 5 234 362 452 595 1.59e-18 88.6
Msa0376040 AT2G34740.3 42.241 116 61 4 260 371 174 287 5.14e-18 84.7
Msa0376040 AT2G34740.2 42.241 116 61 4 260 371 192 305 5.16e-18 85.1
Msa0376040 AT3G63340.12 24.582 419 215 14 95 432 72 470 1.87e-17 85.1
Msa0376040 AT5G36250.1 30.846 201 108 6 260 436 207 400 6.09e-17 83.2
Msa0376040 AT5G01700.1 31.797 217 122 7 224 416 76 290 6.41e-17 82.0
Msa0376040 AT3G63340.6 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0376040 AT3G63340.3 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0376040 AT3G63340.10 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0376040 AT3G63340.4 24.408 422 212 14 95 432 72 470 7.95e-17 83.6
Msa0376040 AT3G63340.11 24.171 422 213 14 95 432 72 470 8.68e-17 83.6
Msa0376040 AT3G63340.7 24.408 422 212 14 95 432 72 470 8.97e-17 83.6
Msa0376040 AT3G63340.5 24.408 422 212 14 95 432 72 470 9.89e-17 83.6
Msa0376040 AT3G63340.1 24.408 422 212 14 95 432 72 470 9.89e-17 83.6
Msa0376040 AT3G63340.8 24.408 422 212 14 95 432 72 470 1.06e-16 83.2
Msa0376040 AT5G57050.3 53.750 80 35 2 260 338 231 309 1.23e-16 80.9
Msa0376040 AT3G17090.1 28.507 221 105 5 249 417 142 361 1.25e-16 81.6
Msa0376040 AT1G79630.2 30.918 207 118 7 229 412 121 325 1.26e-16 82.0
Msa0376040 AT1G79630.7 30.918 207 118 7 229 412 121 325 1.26e-16 82.0
Msa0376040 AT5G01700.2 31.797 217 122 7 224 416 125 339 2.25e-16 80.9
Msa0376040 AT1G16220.1 29.004 231 140 6 229 436 168 397 2.64e-16 81.3
Msa0376040 AT1G79630.6 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0376040 AT1G79630.3 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0376040 AT1G79630.4 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0376040 AT1G79630.5 30.918 207 118 7 229 412 81 285 3.75e-16 80.5
Msa0376040 AT4G27800.2 31.073 177 86 4 239 382 139 312 4.14e-16 79.7
Msa0376040 AT4G27800.3 31.073 177 86 4 239 382 139 312 4.19e-16 79.3
Msa0376040 AT1G72770.2 54.545 77 33 2 260 335 326 401 4.67e-16 80.1
Msa0376040 AT1G72770.5 54.545 77 33 2 260 335 326 401 4.67e-16 80.1
Msa0376040 AT1G79630.1 30.918 207 118 7 229 412 191 395 5.37e-16 80.5
Msa0376040 AT1G79630.8 30.918 207 118 7 229 412 187 391 6.60e-16 80.1
Msa0376040 AT5G26010.1 36.913 149 76 4 249 380 135 282 1.17e-15 78.2
Msa0376040 AT3G55050.1 28.788 198 102 5 244 403 130 326 1.43e-15 78.6
Msa0376040 AT3G55050.2 28.788 198 102 5 244 403 130 326 1.43e-15 78.6
Msa0376040 AT5G66080.2 28.079 203 107 5 239 403 19 220 1.65e-15 77.0
Msa0376040 AT5G66080.1 28.079 203 107 5 239 403 123 324 1.93e-15 78.2
Msa0376040 AT2G05050.1 38.144 97 54 1 322 412 91 187 3.36e-15 74.3
Msa0376040 AT3G51370.2 28.571 203 106 5 239 403 35 236 4.22e-15 75.9
Msa0376040 AT3G51370.1 28.571 203 106 5 239 403 120 321 5.86e-15 76.6
Msa0376040 AT3G51370.3 28.571 203 106 5 239 403 120 321 5.86e-15 76.6
Msa0376040 AT1G68410.4 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0376040 AT1G68410.3 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0376040 AT1G68410.1 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0376040 AT1G68410.2 31.683 202 117 8 241 426 122 318 5.91e-15 77.0
Msa0376040 AT3G02750.2 32.487 197 103 6 260 432 216 406 7.02e-15 77.0
Msa0376040 AT3G02750.1 32.487 197 103 6 260 432 216 406 7.02e-15 77.0
Msa0376040 AT3G17090.2 30.675 163 82 3 249 380 142 304 1.89e-14 74.3
Msa0376040 AT3G63340.2 32.927 164 88 6 291 432 340 503 2.05e-14 76.3
Msa0376040 AT3G27140.1 30.220 182 85 3 260 432 61 209 2.51e-14 72.8
Msa0376040 AT4G38520.2 27.083 240 117 7 234 415 117 356 2.72e-14 74.7
Msa0376040 AT4G38520.1 27.083 240 117 7 234 415 117 356 2.72e-14 74.7
Msa0376040 AT1G47380.1 29.167 192 122 5 246 423 111 302 3.38e-14 74.7
Msa0376040 AT1G09160.2 31.214 173 102 7 256 412 124 295 5.54e-14 73.9
Msa0376040 AT1G09160.1 31.214 173 102 7 256 412 124 295 5.54e-14 73.9
Msa0376040 AT5G36250.2 28.837 215 108 7 260 436 207 414 8.21e-14 73.6
Msa0376040 AT3G12620.2 26.961 204 110 5 234 399 119 321 2.10e-13 72.0
Msa0376040 AT3G12620.1 26.961 204 110 5 234 399 119 321 2.10e-13 72.0
Msa0376040 AT5G02760.1 25.322 233 118 6 239 415 113 345 2.49e-13 71.6
Msa0376040 AT1G03590.1 34.058 138 73 4 260 380 185 321 7.80e-13 70.5
Msa0376040 AT4G32950.2 38.889 126 59 5 260 368 139 263 4.31e-12 67.0
Msa0376040 AT4G03415.1 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0376040 AT4G03415.3 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0376040 AT4G03415.2 33.333 138 74 4 260 380 195 331 6.59e-12 67.8
Msa0376040 AT1G22280.2 45.570 79 39 3 239 316 105 180 3.09e-11 62.8

Find 110 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTATTGTGATCATTTA+TGG 0.053137 3_1:-76061185 Msa0376040:three_prime_UTR
GTTTGCTATAAATAAGTTTA+TGG 0.168904 3_1:-76061132 Msa0376040:three_prime_UTR
GCATCTTGATAACTGAATTT+TGG 0.186147 3_1:+76067287 None:intergenic
GCTCTTTCTAAAACTTATTA+TGG 0.205589 3_1:-76061156 Msa0376040:three_prime_UTR
TCAAGGATCACCTGGATTTC+AGG 0.221623 3_1:+76063203 None:intergenic
CTGTGGGTATTCAAGCTTTA+GGG 0.229516 3_1:-76065859 Msa0376040:CDS
AAACACACTTATAGCCAATT+TGG 0.238676 3_1:+76064697 None:intergenic
GGCCGTTCAGTGTGCTTATT+TGG 0.250467 3_1:-76065783 Msa0376040:CDS
TTTGTTTGAATCTACTAAAA+TGG 0.257355 3_1:+76067339 None:intergenic
GCTGTGGGTATTCAAGCTTT+AGG 0.283523 3_1:-76065860 Msa0376040:CDS
TACTGCTTCAACCGCTGTTT+TGG 0.298247 3_1:-76064390 Msa0376040:CDS
TCAGGTACTTGGAGGGTTGG+AGG 0.316866 3_1:-76063287 Msa0376040:intron
TTATCTGCTGGTCAGGTACT+TGG 0.318306 3_1:-76063298 Msa0376040:intron
TTCCGCTCATCACTTCTATT+AGG 0.319364 3_1:+76063892 None:intergenic
CTAGCTGTACTAGCTTTATC+AGG 0.329502 3_1:+76061369 None:intergenic
GAGGATGATTCTGCTCGTTC+TGG 0.338595 3_1:-76066810 Msa0376040:CDS
GTGTATGATTCTAGGGTAGA+TGG 0.345251 3_1:-76067045 Msa0376040:intron
CTATTTCATTCAAGGGGTCT+AGG 0.354349 3_1:-76064554 Msa0376040:CDS
CGTCTTTATGTTGCTAATGT+TGG 0.369537 3_1:-76064359 Msa0376040:CDS
AGGGGTCTAGGGTTGGTTCA+TGG 0.373370 3_1:-76064542 Msa0376040:CDS
CTAGACCCCTTGAATGAAAT+AGG 0.374141 3_1:+76064555 None:intergenic
TTCTTGCAAGTGATGGACTC+TGG 0.377103 3_1:-76062006 Msa0376040:CDS
TTCTCTCGCACGCGCGGAAG+AGG 0.379452 3_1:-76061505 Msa0376040:CDS
ATTAACTTAAGTAACCTTGC+AGG 0.385220 3_1:-76064482 Msa0376040:CDS
CTAGCAATGTCCCGTGCATT+TGG 0.388360 3_1:-76063260 Msa0376040:CDS
TCAGGTTCTGCTACAACAAA+TGG 0.406761 3_1:+76063221 None:intergenic
TCGCGCTGCTGAGTATTTGA+AGG 0.414937 3_1:-76064768 Msa0376040:CDS
CGGAAGAGAATTGAGAATGC+TGG 0.418557 3_1:-76063874 Msa0376040:CDS
TGCTTATTTGGAATATTTGA+TGG 0.436479 3_1:-76065771 Msa0376040:intron
CAGTTTCTTCATCTATCTCC+TGG 0.443845 3_1:+76062038 None:intergenic
TGTTAGTCCTATTTCATTCA+AGG 0.445734 3_1:-76064562 Msa0376040:CDS
GTTAGTCCTATTTCATTCAA+GGG 0.446364 3_1:-76064561 Msa0376040:CDS
ACAATAAATGCATACTCAAA+TGG 0.447235 3_1:+76064584 None:intergenic
AGGTACTTGGAGGGTTGGAG+GGG 0.452329 3_1:-76063285 Msa0376040:CDS
TCTGCTGGTCAGGTACTTGG+AGG 0.462237 3_1:-76063295 Msa0376040:intron
ATTAAGACATCAACCATTGA+TGG 0.465203 3_1:-76065804 Msa0376040:CDS
GTGCTTGTTCTTGCAAGTGA+TGG 0.466824 3_1:-76062013 Msa0376040:CDS
TGTTGCCATTCAATTACGTT+CGG 0.467610 3_1:-76066980 Msa0376040:CDS
GGCAGCTGCTCGTAAGTTAA+CGG 0.470980 3_1:-76061475 Msa0376040:CDS
TATTTCATTCAAGGGGTCTA+GGG 0.472109 3_1:-76064553 Msa0376040:CDS
CAGGTACTTGGAGGGTTGGA+GGG 0.476854 3_1:-76063286 Msa0376040:CDS
GACAAGAACGTATAAACAAA+TGG 0.481541 3_1:+76064626 None:intergenic
GAGCAGAATCATCCTCTTTG+TGG 0.485689 3_1:+76066817 None:intergenic
GTTATATCAAAAGCCGGAAA+AGG 0.487838 3_1:-76064323 Msa0376040:intron
TCATTCAAGGGGTCTAGGGT+TGG 0.498128 3_1:-76064549 Msa0376040:CDS
GGAAGAGAATTGAGAATGCT+GGG 0.498423 3_1:-76063873 Msa0376040:CDS
ATTCGAAACACGAGATTAAG+AGG 0.504443 3_1:+76067181 None:intergenic
CAACAAATGGCTTCAGCATA+CGG 0.504649 3_1:+76063234 None:intergenic
GGCTTGTAGAGGCTCCAGTT+TGG 0.506243 3_1:-76061111 Msa0376040:three_prime_UTR
TCTTGCAAGTGATGGACTCT+GGG 0.506521 3_1:-76062005 Msa0376040:CDS
GCACACTGAACGGCCATCAA+TGG 0.510832 3_1:+76065791 None:intergenic
AGCAGAATCATCCTCTTTGT+GGG 0.511509 3_1:+76066818 None:intergenic
TGAGAATGAGATGAGGGTGG+AGG 0.514850 3_1:+76067372 None:intergenic
ATTGAATGGCAACAATCTCT+TGG 0.515224 3_1:+76066989 None:intergenic
GGTTCTATGTCAACAAGGGC+TGG 0.523229 3_1:-76066864 Msa0376040:CDS
ATAGGGATGATGGTTGATAC+AGG 0.529679 3_1:-76066885 Msa0376040:CDS
GAATAAGTACATAGGGATGA+TGG 0.530731 3_1:-76066895 Msa0376040:CDS
TGTAGCAGAACCTGAAATCC+AGG 0.531929 3_1:-76063213 Msa0376040:intron
TCTCTCGCACGCGCGGAAGA+GGG 0.531984 3_1:-76061504 Msa0376040:CDS
TGCTGTTTCTCTCGCACGCG+CGG 0.535097 3_1:-76061511 Msa0376040:CDS
GCTGATATGTTTCACCTGCA+AGG 0.538951 3_1:+76064468 None:intergenic
ATGAGATGAGAATGAGATGA+GGG 0.542105 3_1:+76067366 None:intergenic
TTCCTCCGAACGTAATTGAA+TGG 0.542928 3_1:+76066975 None:intergenic
AAAGATAATTTCCGGGATGA+CGG 0.544350 3_1:-76064416 Msa0376040:CDS
TTGTGTGCTTGATTTATTGA+GGG 0.544963 3_1:-76061294 Msa0376040:three_prime_UTR
ATTGTGTGCTTGATTTATTG+AGG 0.552318 3_1:-76061295 Msa0376040:intron
TTGTTACTGGTGGATGCAAG+AGG 0.557429 3_1:-76066785 Msa0376040:intron
TTAGTCCTATTTCATTCAAG+GGG 0.558305 3_1:-76064560 Msa0376040:CDS
CTGCTGGTCAGGTACTTGGA+GGG 0.558808 3_1:-76063294 Msa0376040:intron
GTGTTTAAGAATAAGTACAT+AGG 0.559274 3_1:-76066903 Msa0376040:CDS
TGTTTAAGAATAAGTACATA+GGG 0.560733 3_1:-76066902 Msa0376040:CDS
CTGGGATGTAGTACAGAATG+AGG 0.561731 3_1:-76061987 Msa0376040:intron
AGAACTGTTATATCAAAAGC+CGG 0.562263 3_1:-76064329 Msa0376040:CDS
GAGTGACTTACATTACAAAA+CGG 0.573171 3_1:+76061206 None:intergenic
AATAAGTTTATGGCTTGTAG+AGG 0.583008 3_1:-76061122 Msa0376040:three_prime_UTR
AACAAGGGCTGGACCCTCTG+TGG 0.584711 3_1:-76066853 Msa0376040:CDS
AAGCAGTAGAACCGTCATCC+CGG 0.586100 3_1:+76064405 None:intergenic
TGGTCAGGTACTTGGAGGGT+TGG 0.587206 3_1:-76063290 Msa0376040:intron
AGATGAGAATGAGATGAGGG+TGG 0.595369 3_1:+76067369 None:intergenic
AGATAACATTACTTGTATTG+TGG 0.598689 3_1:-76061427 Msa0376040:CDS
CTTGTCAAATCTGACATCAT+CGG 0.601544 3_1:-76064609 Msa0376040:CDS
TGCCATTCAATTACGTTCGG+AGG 0.605951 3_1:-76066977 Msa0376040:CDS
CATACGGTTGCCAAATGCAC+GGG 0.607533 3_1:+76063250 None:intergenic
GCATACGGTTGCCAAATGCA+CGG 0.608451 3_1:+76063249 None:intergenic
TTCCAAATAAGCACACTGAA+CGG 0.610019 3_1:+76065781 None:intergenic
TGTGGGTATTCAAGCTTTAG+GGG 0.620144 3_1:-76065858 Msa0376040:CDS
ACGCGCGGAAGAGGGAGCTG+AGG 0.624807 3_1:-76061496 Msa0376040:CDS
AAGGGCTGGACCCTCTGTGG+AGG 0.633314 3_1:-76066850 Msa0376040:CDS
AATATCATAGAAATCCTCCA+TGG 0.634352 3_1:+76065824 None:intergenic
CAACATTAGCAACATAAAGA+CGG 0.638225 3_1:+76064360 None:intergenic
AAGAGTCTGCACATGCATGA+TGG 0.638768 3_1:-76061271 Msa0376040:three_prime_UTR
GAAGAGAATTGAGAATGCTG+GGG 0.645480 3_1:-76063872 Msa0376040:CDS
GTGGGTATTCAAGCTTTAGG+GGG 0.647356 3_1:-76065857 Msa0376040:CDS
GATGAGATGAGAATGAGATG+AGG 0.647967 3_1:+76067365 None:intergenic
GAAGATGAAAGACTTAGCTG+TGG 0.649418 3_1:-76065876 Msa0376040:CDS
ATACAGGTTCTATGTCAACA+AGG 0.649790 3_1:-76066869 Msa0376040:CDS
AAGATGAAAGACTTAGCTGT+GGG 0.649895 3_1:-76065875 Msa0376040:CDS
TAATTGCGAAAGAAATGTGA+AGG 0.649934 3_1:+76067247 None:intergenic
AGGTGAAACATATCAGCAGA+CGG 0.662640 3_1:-76064462 Msa0376040:CDS
GGATACTGTGTCCCACAAAG+AGG 0.664416 3_1:-76066829 Msa0376040:CDS
ATTCTAGGGTAGATGGTATG+CGG 0.672838 3_1:-76067038 Msa0376040:intron
ATATTCCATGCAGGTCATGG+TGG 0.673781 3_1:-76064794 Msa0376040:intron
GGAGATAGATGAAGAAACTG+AGG 0.679288 3_1:-76062035 Msa0376040:CDS
AACCTAATAGAAGTGATGAG+CGG 0.688453 3_1:-76063894 Msa0376040:CDS
TACAGGTTCTATGTCAACAA+GGG 0.688710 3_1:-76066868 Msa0376040:CDS
GACACAGTATCCTCCACAGA+GGG 0.693531 3_1:+76066840 None:intergenic
AAGAGAATTGAGAATGCTGG+GGG 0.703336 3_1:-76063871 Msa0376040:CDS
GGGGAAGAGAGTGACCATGG+AGG 0.741569 3_1:-76065838 Msa0376040:CDS
ACGGTTATCAACCAAAACAG+CGG 0.747863 3_1:+76064379 None:intergenic
GGACACAGTATCCTCCACAG+AGG 0.792073 3_1:+76066839 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTGATTATTTTAAATA+TGG - chr3_1:76061735-76061754 Msa0376040:intron 10.0%
!!! TTTACATTAGATTTTTATAT+TGG - chr3_1:76061852-76061871 Msa0376040:intron 10.0%
!!! TTACATTAGATTTTTATATT+GGG - chr3_1:76061853-76061872 Msa0376040:intron 10.0%
!! TTTGTAATTAAAAGTAAAAT+AGG - chr3_1:76065438-76065457 Msa0376040:intron 10.0%
!!! AGTTGTATATAATTTTTTAT+CGG - chr3_1:76065776-76065795 Msa0376040:CDS 10.0%
!!! TGTTGTATATAATTTTTTAT+TGG - chr3_1:76065811-76065830 Msa0376040:CDS 10.0%
!! ATAAAAAAAAGTTAATTTCA+GGG - chr3_1:76065991-76066010 Msa0376040:intron 10.0%
!! ATATATTAAAATGGCTTATA+AGG - chr3_1:76061886-76061905 Msa0376040:intron 15.0%
!! ATAGTAATCTTAAAAATTCA+TGG - chr3_1:76062835-76062854 Msa0376040:intron 15.0%
!!! TTATTGTTTTGATTTTTCTT+TGG + chr3_1:76063126-76063145 None:intergenic 15.0%
!! ATGTAATTTGATTAAGAAAT+GGG - chr3_1:76065120-76065139 Msa0376040:intron 15.0%
!!! GTTGTATATAATTTTTTATC+GGG - chr3_1:76065777-76065796 Msa0376040:CDS 15.0%
!! TTGAAAATTCATTAATTTCA+CGG + chr3_1:76065881-76065900 None:intergenic 15.0%
!! GATAAAAAAAAGTTAATTTC+AGG - chr3_1:76065990-76066009 Msa0376040:intron 15.0%
!! ATTTAATCCCTAATATAATA+GGG + chr3_1:76066058-76066077 None:intergenic 15.0%
!! TATTTAATCCCTAATATAAT+AGG + chr3_1:76066059-76066078 None:intergenic 15.0%
!! TCATTAGTAACAAATATAAT+TGG - chr3_1:76066590-76066609 Msa0376040:intron 15.0%
!!! AAGAAAAAACACATTTTATT+TGG + chr3_1:76066833-76066852 None:intergenic 15.0%
!! TTTGTTTGAATCTACTAAAA+TGG + chr3_1:76061139-76061158 None:intergenic 20.0%
!! AATGCGAAAATTAATAAGAT+CGG + chr3_1:76061364-76061383 None:intergenic 20.0%
!!! TAATTTTTGTGTATGATTCT+AGG - chr3_1:76061422-76061441 Msa0376040:CDS 20.0%
!!! AATTTTTGTGTATGATTCTA+GGG - chr3_1:76061423-76061442 Msa0376040:CDS 20.0%
!! TGTTTAAGAATAAGTACATA+GGG - chr3_1:76061573-76061592 Msa0376040:intron 20.0%
!! CGAACTGATATATATTAAAA+TGG - chr3_1:76061877-76061896 Msa0376040:intron 20.0%
!! TCGAAAAAAAAAAATCTTAC+AGG + chr3_1:76062083-76062102 None:intergenic 20.0%
!!! AGAATCAATTTTGCAATTAT+TGG - chr3_1:76062104-76062123 Msa0376040:intron 20.0%
!!! AATTTTGCAATTATTGGTTT+TGG - chr3_1:76062110-76062129 Msa0376040:intron 20.0%
!!! AGGATTTTTTTTAACACATA+TGG - chr3_1:76062186-76062205 Msa0376040:intron 20.0%
!!! GGATTTTTTTTAACACATAT+GGG - chr3_1:76062187-76062206 Msa0376040:intron 20.0%
!!! GATTTTTTTTAACACATATG+GGG - chr3_1:76062188-76062207 Msa0376040:intron 20.0%
!!! AAACAGTTTTAGTTTAAATG+AGG - chr3_1:76062350-76062369 Msa0376040:intron 20.0%
!! TACTAAAATATCACTACTAT+TGG + chr3_1:76062464-76062483 None:intergenic 20.0%
!!! ATAGTAGTGATATTTTAGTA+AGG - chr3_1:76062464-76062483 Msa0376040:intron 20.0%
!!! TAGTAGTGATATTTTAGTAA+GGG - chr3_1:76062465-76062484 Msa0376040:intron 20.0%
!! TTGTTTACGTATATTACTAA+TGG - chr3_1:76062897-76062916 Msa0376040:intron 20.0%
!!! GCAACTTATTATTTAGTTTT+TGG - chr3_1:76062919-76062938 Msa0376040:intron 20.0%
!!! AATCTAAATATTACCTTTTC+CGG + chr3_1:76064168-76064187 None:intergenic 20.0%
!! TGAAGAAATCAAAATATAGT+AGG + chr3_1:76064192-76064211 None:intergenic 20.0%
!!! TATTATTGAGGATATGTTTT+TGG - chr3_1:76064688-76064707 Msa0376040:CDS 20.0%
!! GATGTAATTTGATTAAGAAA+TGG - chr3_1:76065119-76065138 Msa0376040:intron 20.0%
!! AGATTGCATAACTTTAATTA+AGG + chr3_1:76065310-76065329 None:intergenic 20.0%
!! CAATCTATTATTTGATTGTA+TGG - chr3_1:76065324-76065343 Msa0376040:intron 20.0%
!! AAGTACTTATAAATATAGTG+TGG - chr3_1:76065473-76065492 Msa0376040:intron 20.0%
!! AGTACTTATAAATATAGTGT+GGG - chr3_1:76065474-76065493 Msa0376040:intron 20.0%
!!! ATATAATTTTTTATCGGGTA+AGG - chr3_1:76065782-76065801 Msa0376040:CDS 20.0%
!! CTATAGTTTCAATGTTAAAA+CGG + chr3_1:76065841-76065860 None:intergenic 20.0%
!!! ATAATGGATATACAATTACA+TGG + chr3_1:76065910-76065929 None:intergenic 20.0%
!!! AACAGTTTCAAATACATTTT+TGG - chr3_1:76066159-76066178 Msa0376040:intron 20.0%
!!! TTATTTCCTCATATATTTTC+AGG - chr3_1:76066413-76066432 Msa0376040:intron 20.0%
!!! TTCATCTTCATTTAAAGTAT+TGG + chr3_1:76066736-76066755 None:intergenic 20.0%
!!! GTTTGCTATAAATAAGTTTA+TGG - chr3_1:76067343-76067362 Msa0376040:five_prime_UTR 20.0%
! GTGTTTAAGAATAAGTACAT+AGG - chr3_1:76061572-76061591 Msa0376040:intron 25.0%
! AAAATGGCTTATAAGGTTAT+TGG - chr3_1:76061893-76061912 Msa0376040:intron 25.0%
! CTAAATTTACAATGACCAAA+TGG + chr3_1:76061997-76062016 None:intergenic 25.0%
! CATTTGGTCATTGTAAATTT+AGG - chr3_1:76061995-76062014 Msa0376040:CDS 25.0%
!! TAAATTTAGGATCGAAGTAT+TGG - chr3_1:76062008-76062027 Msa0376040:CDS 25.0%
!! GAAATATCTGTTTTCTTCTT+GGG - chr3_1:76062132-76062151 Msa0376040:intron 25.0%
!! AAATATCTGTTTTCTTCTTG+GGG - chr3_1:76062133-76062152 Msa0376040:intron 25.0%
! TAATACAAATCAGTTTGGTA+AGG + chr3_1:76062301-76062320 None:intergenic 25.0%
!!! GTTGATAATACAAATCAGTT+TGG + chr3_1:76062306-76062325 None:intergenic 25.0%
! ATTATCAACTTACCAAATGA+CGG - chr3_1:76062317-76062336 Msa0376040:intron 25.0%
!! TATGTCGCTGAATTTTTAAT+TGG - chr3_1:76062572-76062591 Msa0376040:intron 25.0%
!! TGCTTATTTGGAATATTTGA+TGG - chr3_1:76062704-76062723 Msa0376040:intron 25.0%
! GACTCATGAAAAAATAAGAT+TGG - chr3_1:76062857-76062876 Msa0376040:intron 25.0%
! AAAAAATAAGATTGGACAAC+TGG - chr3_1:76062865-76062884 Msa0376040:intron 25.0%
!!! TTCCTATTTTTTCTTTGCTT+GGG + chr3_1:76062946-76062965 None:intergenic 25.0%
!!! TTTCCTATTTTTTCTTTGCT+TGG + chr3_1:76062947-76062966 None:intergenic 25.0%
! GAAAATAAGATATGAGAAGA+GGG + chr3_1:76063399-76063418 None:intergenic 25.0%
!!! ATTTTCCATTTTTCAATGCA+CGG - chr3_1:76063413-76063432 Msa0376040:intron 25.0%
! TTTATTTGTCTACAGTGAAA+TGG - chr3_1:76063511-76063530 Msa0376040:intron 25.0%
! TTATTTGTCTACAGTGAAAT+GGG - chr3_1:76063512-76063531 Msa0376040:intron 25.0%
!!! TATTTTAGCTTAACGAAACT+AGG - chr3_1:76063542-76063561 Msa0376040:intron 25.0%
!!! ATTTTAGCTTAACGAAACTA+GGG - chr3_1:76063543-76063562 Msa0376040:intron 25.0%
! ACAATAAATGCATACTCAAA+TGG + chr3_1:76063894-76063913 None:intergenic 25.0%
!! ACTCTGAAAAAGATAATTTC+CGG - chr3_1:76064051-76064070 Msa0376040:intron 25.0%
!!! ATGAGTTCGTTTTTATGAAA+AGG + chr3_1:76064300-76064319 None:intergenic 25.0%
!! TTCACATTATAAGTTTTCTC+TGG + chr3_1:76064338-76064357 None:intergenic 25.0%
! TAACTACATAAGATATCACT+TGG - chr3_1:76064385-76064404 Msa0376040:CDS 25.0%
! TCTAGATTGTTCTATTATTG+AGG - chr3_1:76064676-76064695 Msa0376040:CDS 25.0%
! GATGTGTATCAATTTATCAT+TGG - chr3_1:76064751-76064770 Msa0376040:CDS 25.0%
!!! AAGTTTTTTGATGATGACAT+CGG - chr3_1:76064790-76064809 Msa0376040:intron 25.0%
! TACAAAGTAACAATGAGAAT+AGG - chr3_1:76064984-76065003 Msa0376040:intron 25.0%
! AACTTTAATTAAGGTACACA+AGG + chr3_1:76065301-76065320 None:intergenic 25.0%
! GTACTTATAAATATAGTGTG+GGG - chr3_1:76065475-76065494 Msa0376040:intron 25.0%
!!! CGTTTTAACATTGAAACTAT+AGG - chr3_1:76065839-76065858 Msa0376040:CDS 25.0%
! AACATTGAAACTATAGGAAT+TGG - chr3_1:76065845-76065864 Msa0376040:CDS 25.0%
! ACTATAGGAATTGGTTAATT+CGG - chr3_1:76065854-76065873 Msa0376040:CDS 25.0%
!! AGTTTGAAATTTCGCAATAT+CGG - chr3_1:76066017-76066036 Msa0376040:intron 25.0%
! ATAATAGGGATCAGTTAATT+TGG + chr3_1:76066044-76066063 None:intergenic 25.0%
! TAACTGATCCCTATTATATT+AGG - chr3_1:76066047-76066066 Msa0376040:intron 25.0%
! AACTGATCCCTATTATATTA+GGG - chr3_1:76066048-76066067 Msa0376040:intron 25.0%
!!! TAGTTTTTTTTAGATCCATG+TGG - chr3_1:76066089-76066108 Msa0376040:intron 25.0%
!!! TTTTGAAGTTCTCGTAAATA+TGG + chr3_1:76066122-76066141 None:intergenic 25.0%
!!! ATTTGTTTTCTTGCTAAAGT+GGG + chr3_1:76066255-76066274 None:intergenic 25.0%
!!! TATTTGTTTTCTTGCTAAAG+TGG + chr3_1:76066256-76066275 None:intergenic 25.0%
! AATCGTTAAATATTACATGG+GGG + chr3_1:76066713-76066732 None:intergenic 25.0%
! GAATCGTTAAATATTACATG+GGG + chr3_1:76066714-76066733 None:intergenic 25.0%
! GGAATCGTTAAATATTACAT+GGG + chr3_1:76066715-76066734 None:intergenic 25.0%
! TGGAATCGTTAAATATTACA+TGG + chr3_1:76066716-76066735 None:intergenic 25.0%
! ACACAATAAATTGAGGTTAA+TGG + chr3_1:76066782-76066801 None:intergenic 25.0%
! TTAACCTCAATTTATTGTGT+CGG - chr3_1:76066782-76066801 Msa0376040:intron 25.0%
! GGTTTAAAAATAAATCATGC+CGG + chr3_1:76066812-76066831 None:intergenic 25.0%
! AGAGAAAAATAAACACAACA+TGG + chr3_1:76066895-76066914 None:intergenic 25.0%
!!! GTTGTGTTTATTTTTCTCTT+TGG - chr3_1:76066896-76066915 Msa0376040:CDS 25.0%
! AGATAACATTACTTGTATTG+TGG - chr3_1:76067048-76067067 Msa0376040:intron 25.0%
! TCTTGTATTGTGATCATTTA+TGG - chr3_1:76067290-76067309 Msa0376040:five_prime_UTR 25.0%
!!! GCTCTTTCTAAAACTTATTA+TGG - chr3_1:76067319-76067338 Msa0376040:five_prime_UTR 25.0%
! ACAAAACAAAAATACCAAAC+TGG + chr3_1:76067381-76067400 None:intergenic 25.0%
!! GCATCTTGATAACTGAATTT+TGG + chr3_1:76061191-76061210 None:intergenic 30.0%
TAATTGCGAAAGAAATGTGA+AGG + chr3_1:76061231-76061250 None:intergenic 30.0%
!! AGCTTTATCTCTTTTCGATA+TGG - chr3_1:76061941-76061960 Msa0376040:intron 30.0%
! GGAAATATCTGTTTTCTTCT+TGG - chr3_1:76062131-76062150 Msa0376040:intron 30.0%
AACACATATGGGGTTAAAAA+TGG - chr3_1:76062198-76062217 Msa0376040:intron 30.0%
TTATCAACTTACCAAATGAC+GGG - chr3_1:76062318-76062337 Msa0376040:intron 30.0%
!! ATTTTAGTAAGGGCTTATAG+TGG - chr3_1:76062475-76062494 Msa0376040:intron 30.0%
TACTTGATCGCAATATAGAT+AGG + chr3_1:76062547-76062566 None:intergenic 30.0%
AATATCATAGAAATCCTCCA+TGG + chr3_1:76062654-76062673 None:intergenic 30.0%
ATTAAGACATCAACCATTGA+TGG - chr3_1:76062671-76062690 Msa0376040:intron 30.0%
!! TTAAATCTTTCTAGTTCTCC+AGG - chr3_1:76062759-76062778 Msa0376040:intron 30.0%
! CATTTTTCATATGAAATGCC+TGG + chr3_1:76062780-76062799 None:intergenic 30.0%
!!! TCCTATTTTTTCTTTGCTTG+GGG + chr3_1:76062945-76062964 None:intergenic 30.0%
TATTAAATGCTATGCACACT+TGG + chr3_1:76062982-76063001 None:intergenic 30.0%
GTATAACTCACAAACTGTTT+CGG + chr3_1:76063010-76063029 None:intergenic 30.0%
TTGTGAGTTATACATGTTTG+TGG - chr3_1:76063017-76063036 Msa0376040:intron 30.0%
! TTTCTTTGGAAGATCAACAT+AGG + chr3_1:76063112-76063131 None:intergenic 30.0%
! AGAAAGATCAAAACTGATTC+AGG + chr3_1:76063183-76063202 None:intergenic 30.0%
! ACATTTTGTTGAAAGCTCAT+GGG + chr3_1:76063276-76063295 None:intergenic 30.0%
! TACATTTTGTTGAAAGCTCA+TGG + chr3_1:76063277-76063296 None:intergenic 30.0%
GGAAAATAAGATATGAGAAG+AGG + chr3_1:76063400-76063419 None:intergenic 30.0%
CTAACATTGCAAATATTCGA+AGG - chr3_1:76063442-76063461 Msa0376040:intron 30.0%
TAGGGAAGAAAATATGACAT+TGG - chr3_1:76063561-76063580 Msa0376040:intron 30.0%
AGATATATCAATGACCACAA+AGG - chr3_1:76063616-76063635 Msa0376040:intron 30.0%
AACTCGTTTAGAAATTCTCA+AGG + chr3_1:76063657-76063676 None:intergenic 30.0%
! GAGTTTTTAATATTCCATGC+AGG - chr3_1:76063672-76063691 Msa0376040:intron 30.0%
TTGGTATCTGTCAAAAACTT+CGG + chr3_1:76063762-76063781 None:intergenic 30.0%
! GTTTTTGACAGATACCAAAT+TGG - chr3_1:76063764-76063783 Msa0376040:intron 30.0%
AAACACACTTATAGCCAATT+TGG + chr3_1:76063781-76063800 None:intergenic 30.0%
GACAAGAACGTATAAACAAA+TGG + chr3_1:76063852-76063871 None:intergenic 30.0%
TGTTAGTCCTATTTCATTCA+AGG - chr3_1:76063913-76063932 Msa0376040:CDS 30.0%
GTTAGTCCTATTTCATTCAA+GGG - chr3_1:76063914-76063933 Msa0376040:CDS 30.0%
TTAGTCCTATTTCATTCAAG+GGG - chr3_1:76063915-76063934 Msa0376040:CDS 30.0%
!! TCATTTTTCAGTCTGTTATG+TGG - chr3_1:76063964-76063983 Msa0376040:intron 30.0%
ATTAACTTAAGTAACCTTGC+AGG - chr3_1:76063993-76064012 Msa0376040:intron 30.0%
! CTCTGAAAAAGATAATTTCC+GGG - chr3_1:76064052-76064071 Msa0376040:intron 30.0%
CAACATTAGCAACATAAAGA+CGG + chr3_1:76064118-76064137 None:intergenic 30.0%
AGAACTGTTATATCAAAAGC+CGG - chr3_1:76064146-76064165 Msa0376040:intron 30.0%
! GTCTAGCTCACTAATAATAT+TGG - chr3_1:76064225-76064244 Msa0376040:intron 30.0%
CTCACTAATAATATTGGTAG+TGG - chr3_1:76064231-76064250 Msa0376040:intron 30.0%
! AAAGCATTTCTAACAAGACA+AGG - chr3_1:76064413-76064432 Msa0376040:CDS 30.0%
AAGCATTTCTAACAAGACAA+GGG - chr3_1:76064414-76064433 Msa0376040:CDS 30.0%
! CATTTTGTGCAAGATACAAT+GGG - chr3_1:76064713-76064732 Msa0376040:CDS 30.0%
! ATTTTGTGCAAGATACAATG+GGG - chr3_1:76064714-76064733 Msa0376040:CDS 30.0%
! ATGCATGAAGTATTATCTTC+TGG - chr3_1:76064845-76064864 Msa0376040:intron 30.0%
!!! CAATGCAGTTTACACTTTTT+TGG + chr3_1:76064909-76064928 None:intergenic 30.0%
CTTAATCAAATTACATCCCT+TGG + chr3_1:76065116-76065135 None:intergenic 30.0%
CATTATCTACATTCACTGTT+AGG + chr3_1:76065389-76065408 None:intergenic 30.0%
! TGTATGGGTTATTCAGTATT+AGG - chr3_1:76065608-76065627 Msa0376040:intron 30.0%
TAGTTTCAATGTTAAAACGG+TGG + chr3_1:76065838-76065857 None:intergenic 30.0%
AGAAAAGACTAGTACGATAA+TGG + chr3_1:76065926-76065945 None:intergenic 30.0%
GTCCTTCAAATTATCCTAAA+TGG - chr3_1:76065959-76065978 Msa0376040:intron 30.0%
! GTCCATTTAGGATAATTTGA+AGG + chr3_1:76065964-76065983 None:intergenic 30.0%
TTTATCACATGAGTCCATTT+AGG + chr3_1:76065976-76065995 None:intergenic 30.0%
AAATATGGACAAAATCCACA+TGG + chr3_1:76066107-76066126 None:intergenic 30.0%
!! TTTGTTTTCTTGCTAAAGTG+GGG + chr3_1:76066254-76066273 None:intergenic 30.0%
ATGATGTGGATAACCTTAAA+GGG - chr3_1:76066325-76066344 Msa0376040:intron 30.0%
TTGCTTTCACATACATAATC+AGG - chr3_1:76066547-76066566 Msa0376040:intron 30.0%
ATGAAGATGTATATTTCAGC+TGG - chr3_1:76066639-76066658 Msa0376040:intron 30.0%
!! GTTCTAAAAGTGTGAAAACT+CGG + chr3_1:76066672-76066691 None:intergenic 30.0%
AGATAAGTACTCAACATTCT+TGG - chr3_1:76066755-76066774 Msa0376040:intron 30.0%
!!! TTATTTTTCTCTTTGGTGCT+CGG - chr3_1:76066903-76066922 Msa0376040:CDS 30.0%
ATTGTGTGCTTGATTTATTG+AGG - chr3_1:76067180-76067199 Msa0376040:five_prime_UTR 30.0%
TTGTGTGCTTGATTTATTGA+GGG - chr3_1:76067181-76067200 Msa0376040:five_prime_UTR 30.0%
GAGTGACTTACATTACAAAA+CGG + chr3_1:76067272-76067291 None:intergenic 30.0%
! AATAAGTTTATGGCTTGTAG+AGG - chr3_1:76067353-76067372 Msa0376040:five_prime_UTR 30.0%
ATGAGATGAGAATGAGATGA+GGG + chr3_1:76061112-76061131 None:intergenic 35.0%
ATTCGAAACACGAGATTAAG+AGG + chr3_1:76061297-76061316 None:intergenic 35.0%
ATTGAATGGCAACAATCTCT+TGG + chr3_1:76061489-76061508 None:intergenic 35.0%
TGTTGCCATTCAATTACGTT+CGG - chr3_1:76061495-76061514 Msa0376040:CDS 35.0%
GAATAAGTACATAGGGATGA+TGG - chr3_1:76061580-76061599 Msa0376040:intron 35.0%
ATACAGGTTCTATGTCAACA+AGG - chr3_1:76061606-76061625 Msa0376040:intron 35.0%
TACAGGTTCTATGTCAACAA+GGG - chr3_1:76061607-76061626 Msa0376040:intron 35.0%
AACACGCTACTTAACTATCT+CGG + chr3_1:76061821-76061840 None:intergenic 35.0%
GCAACATTTACATCTCCATT+TGG - chr3_1:76061979-76061998 Msa0376040:intron 35.0%
ACATATGGGGTTAAAAATGG+AGG - chr3_1:76062201-76062220 Msa0376040:intron 35.0%
CATATGGGGTTAAAAATGGA+GGG - chr3_1:76062202-76062221 Msa0376040:intron 35.0%
ATATGGGGTTAAAAATGGAG+GGG - chr3_1:76062203-76062222 Msa0376040:intron 35.0%
AAAAATGGAGGGGTTATTCA+TGG - chr3_1:76062213-76062232 Msa0376040:intron 35.0%
GGAGGGAAGTAAAAAAAACA+TGG + chr3_1:76062280-76062299 None:intergenic 35.0%
ACAAATCAGTTTGGTAAGGA+GGG + chr3_1:76062297-76062316 None:intergenic 35.0%
TACAAATCAGTTTGGTAAGG+AGG + chr3_1:76062298-76062317 None:intergenic 35.0%
AAGATGAAAGACTTAGCTGT+GGG - chr3_1:76062600-76062619 Msa0376040:intron 35.0%
TTCCAAATAAGCACACTGAA+CGG + chr3_1:76062697-76062716 None:intergenic 35.0%
! TAAAGCAAGCTTTTCTGCTT+AGG + chr3_1:76063071-76063090 None:intergenic 35.0%
ACAGAAGCTTCATAAAGACA+GGG + chr3_1:76063214-76063233 None:intergenic 35.0%
TACAGAAGCTTCATAAAGAC+AGG + chr3_1:76063215-76063234 None:intergenic 35.0%
! CATTTTGTTGAAAGCTCATG+GGG + chr3_1:76063275-76063294 None:intergenic 35.0%
GTTGCGAAAATTGCTAAATC+TGG - chr3_1:76063318-76063337 Msa0376040:intron 35.0%
TGGAACTTAATTCAAGAAGC+AGG + chr3_1:76063362-76063381 None:intergenic 35.0%
! ATATGACATTGGCTGCTATT+TGG - chr3_1:76063572-76063591 Msa0376040:intron 35.0%
! TATGACATTGGCTGCTATTT+GGG - chr3_1:76063573-76063592 Msa0376040:intron 35.0%
TTAATATTCCATGCAGGTCA+TGG - chr3_1:76063678-76063697 Msa0376040:intron 35.0%
CTTGTCAAATCTGACATCAT+CGG - chr3_1:76063866-76063885 Msa0376040:CDS 35.0%
TATTTCATTCAAGGGGTCTA+GGG - chr3_1:76063922-76063941 Msa0376040:intron 35.0%
AAAGATAATTTCCGGGATGA+CGG - chr3_1:76064059-76064078 Msa0376040:intron 35.0%
CGTCTTTATGTTGCTAATGT+TGG - chr3_1:76064116-76064135 Msa0376040:intron 35.0%
GTTATATCAAAAGCCGGAAA+AGG - chr3_1:76064152-76064171 Msa0376040:intron 35.0%
AACCTAATAGAAGTGATGAG+CGG - chr3_1:76064581-76064600 Msa0376040:CDS 35.0%
! GCATTTTGTGCAAGATACAA+TGG - chr3_1:76064712-76064731 Msa0376040:CDS 35.0%
TTTATCATTGGTCGAAGATG+AGG - chr3_1:76064763-76064782 Msa0376040:CDS 35.0%
AATTCCAAGGCAGAGATATA+TGG + chr3_1:76065083-76065102 None:intergenic 35.0%
ATCAAATTACATCCCTTGGA+TGG + chr3_1:76065112-76065131 None:intergenic 35.0%
ATTCACTTGTGTTTATCTGC+TGG - chr3_1:76065165-76065184 Msa0376040:intron 35.0%
TAAGGTACACAAGGTAATCA+AGG + chr3_1:76065292-76065311 None:intergenic 35.0%
CTACATTCACTGTTAGGATT+TGG + chr3_1:76065383-76065402 None:intergenic 35.0%
ATAAATATAGTGTGGGGTTG+AGG - chr3_1:76065481-76065500 Msa0376040:intron 35.0%
! GACTTGAGAATTTTGCAACT+TGG - chr3_1:76065503-76065522 Msa0376040:intron 35.0%
TTATCACAGCTAATGAGAGT+AGG - chr3_1:76065561-76065580 Msa0376040:intron 35.0%
TATCACAGCTAATGAGAGTA+GGG - chr3_1:76065562-76065581 Msa0376040:intron 35.0%
AATAACCCATACATGACTAG+CGG + chr3_1:76065601-76065620 None:intergenic 35.0%
!!! ATTTTTTATCGGGTAAGGCT+TGG - chr3_1:76065787-76065806 Msa0376040:CDS 35.0%
AATCTCACTTCCTATACTAG+GGG + chr3_1:76066194-76066213 None:intergenic 35.0%
CAATCTCACTTCCTATACTA+GGG + chr3_1:76066195-76066214 None:intergenic 35.0%
TCAATCTCACTTCCTATACT+AGG + chr3_1:76066196-76066215 None:intergenic 35.0%
!!! TTTTCCATTGATGATGCAGA+AGG - chr3_1:76066285-76066304 Msa0376040:intron 35.0%
CATCATGGAAAGCTAAGTTA+AGG + chr3_1:76066311-76066330 None:intergenic 35.0%
! TAACTTAGCTTTCCATGATG+TGG - chr3_1:76066311-76066330 Msa0376040:intron 35.0%
!! CTTTAAGGTTATCCACATCA+TGG + chr3_1:76066326-76066345 None:intergenic 35.0%
CATGATGTGGATAACCTTAA+AGG - chr3_1:76066324-76066343 Msa0376040:intron 35.0%
AGTACAGAATGAGGTAAGAT+CGG - chr3_1:76066497-76066516 Msa0376040:intron 35.0%
TTTCACATACATAATCAGGC+AGG - chr3_1:76066551-76066570 Msa0376040:intron 35.0%
AAGATGTATATTTCAGCTGG+TGG - chr3_1:76066642-76066661 Msa0376040:intron 35.0%
TTTGCCGACACAATAAATTG+AGG + chr3_1:76066789-76066808 None:intergenic 35.0%
! AATTTATTGTGTCGGCAAAC+CGG - chr3_1:76066790-76066809 Msa0376040:CDS 35.0%
!!! TATTTTTCTCTTTGGTGCTC+GGG - chr3_1:76066904-76066923 Msa0376040:CDS 35.0%
GATGAGATGAGAATGAGATG+AGG + chr3_1:76061113-76061132 None:intergenic 40.0%
!! GTGTATGATTCTAGGGTAGA+TGG - chr3_1:76061430-76061449 Msa0376040:CDS 40.0%
!! ATTCTAGGGTAGATGGTATG+CGG - chr3_1:76061437-76061456 Msa0376040:CDS 40.0%
TTCCTCCGAACGTAATTGAA+TGG + chr3_1:76061503-76061522 None:intergenic 40.0%
! ATAGGGATGATGGTTGATAC+AGG - chr3_1:76061590-76061609 Msa0376040:intron 40.0%
AGCAGAATCATCCTCTTTGT+GGG + chr3_1:76061660-76061679 None:intergenic 40.0%
!! TCTGCTTGCTATGTTTGTTG+AGG - chr3_1:76061766-76061785 Msa0376040:intron 40.0%
TCTTTAATGTTGCGCGTGTT+TGG - chr3_1:76062047-76062066 Msa0376040:intron 40.0%
CTTTAATGTTGCGCGTGTTT+GGG - chr3_1:76062048-76062067 Msa0376040:intron 40.0%
CTTCTTGGGGTTCTTATCTT+TGG - chr3_1:76062146-76062165 Msa0376040:intron 40.0%
! GGTTCTTATCTTTGGAGGTT+TGG - chr3_1:76062154-76062173 Msa0376040:intron 40.0%
!! TGGAGGTTTGGTTATTTCTG+AGG - chr3_1:76062166-76062185 Msa0376040:intron 40.0%
! TACCAAATGACGGGAGTTAA+TGG - chr3_1:76062327-76062346 Msa0376040:intron 40.0%
TTCCATTAACTCCCGTCATT+TGG + chr3_1:76062332-76062351 None:intergenic 40.0%
! TGTATCCGACTTGATCTAGT+GGG + chr3_1:76062410-76062429 None:intergenic 40.0%
! ATGTATCCGACTTGATCTAG+TGG + chr3_1:76062411-76062430 None:intergenic 40.0%
! AAGGGCTTATAGTGGAAGAA+TGG - chr3_1:76062483-76062502 Msa0376040:intron 40.0%
! ATAGTGGAAGAATGGTTGTG+TGG - chr3_1:76062491-76062510 Msa0376040:intron 40.0%
GAAGATGAAAGACTTAGCTG+TGG - chr3_1:76062599-76062618 Msa0376040:intron 40.0%
CTGTGGGTATTCAAGCTTTA+GGG - chr3_1:76062616-76062635 Msa0376040:intron 40.0%
! TGTGGGTATTCAAGCTTTAG+GGG - chr3_1:76062617-76062636 Msa0376040:intron 40.0%
TAACATTCTAGCAAGCAACG+AGG + chr3_1:76062742-76062761 None:intergenic 40.0%
GCCCCAAGCAAAGAAAAAAT+AGG - chr3_1:76062941-76062960 Msa0376040:intron 40.0%
! ATGACATTGGCTGCTATTTG+GGG - chr3_1:76063574-76063593 Msa0376040:intron 40.0%
AATTCTCAAGGCAACAGAAC+AGG + chr3_1:76063645-76063664 None:intergenic 40.0%
CTAGACCCCTTGAATGAAAT+AGG + chr3_1:76063923-76063942 None:intergenic 40.0%
CTATTTCATTCAAGGGGTCT+AGG - chr3_1:76063921-76063940 Msa0376040:CDS 40.0%
AGGTGAAACATATCAGCAGA+CGG - chr3_1:76064013-76064032 Msa0376040:intron 40.0%
ACGGTTATCAACCAAAACAG+CGG + chr3_1:76064099-76064118 None:intergenic 40.0%
TTCCGCTCATCACTTCTATT+AGG + chr3_1:76064586-76064605 None:intergenic 40.0%
GGAAGAGAATTGAGAATGCT+GGG - chr3_1:76064602-76064621 Msa0376040:CDS 40.0%
GAAGAGAATTGAGAATGCTG+GGG - chr3_1:76064603-76064622 Msa0376040:CDS 40.0%
AAGAGAATTGAGAATGCTGG+GGG - chr3_1:76064604-76064623 Msa0376040:CDS 40.0%
TGGATGGACAGAAAATTCCA+AGG + chr3_1:76065096-76065115 None:intergenic 40.0%
! TGGAATTTTCTGTCCATCCA+AGG - chr3_1:76065096-76065115 Msa0376040:intron 40.0%
! GGAATTTTCTGTCCATCCAA+GGG - chr3_1:76065097-76065116 Msa0376040:intron 40.0%
CAACAAATGGCTTCAGCATA+CGG + chr3_1:76065244-76065263 None:intergenic 40.0%
TCAGGTTCTGCTACAACAAA+TGG + chr3_1:76065257-76065276 None:intergenic 40.0%
AGAAGTGACAAGTGAGAGAA+AGG - chr3_1:76065527-76065546 Msa0376040:intron 40.0%
ATCACAGCTAATGAGAGTAG+GGG - chr3_1:76065563-76065582 Msa0376040:intron 40.0%
ATCAACTTCTGGCCATTTGT+CGG + chr3_1:76065661-76065680 None:intergenic 40.0%
! ACAAATGGCCAGAAGTTGAT+AGG - chr3_1:76065661-76065680 Msa0376040:intron 40.0%
TGAACAAGCCTATCAACTTC+TGG + chr3_1:76065672-76065691 None:intergenic 40.0%
! TTTTCTTGCTAAAGTGGGGA+GGG + chr3_1:76066250-76066269 None:intergenic 40.0%
ACACAGATGATGTCCCTTTA+AGG + chr3_1:76066341-76066360 None:intergenic 40.0%
CCTGGTCCTGAAAATATATG+AGG + chr3_1:76066422-76066441 None:intergenic 40.0%
!! CCTCATATATTTTCAGGACC+AGG - chr3_1:76066419-76066438 Msa0376040:intron 40.0%
CAGTTTCTTCATCTATCTCC+TGG + chr3_1:76066440-76066459 None:intergenic 40.0%
GGAGATAGATGAAGAAACTG+AGG - chr3_1:76066440-76066459 Msa0376040:intron 40.0%
TGAAAGCAACAAGCAATGCA+GGG + chr3_1:76066536-76066555 None:intergenic 40.0%
GGGGAATTGACAATAGGATT+AGG + chr3_1:76066694-76066713 None:intergenic 40.0%
TACATGGGGGAATTGACAAT+AGG + chr3_1:76066700-76066719 None:intergenic 40.0%
AGAAACAGCATCCTGATCAA+AGG + chr3_1:76066954-76066973 None:intergenic 40.0%
!! CTAGCTGTACTAGCTTTATC+AGG + chr3_1:76067109-76067128 None:intergenic 40.0%
AGATGAGAATGAGATGAGGG+TGG + chr3_1:76061109-76061128 None:intergenic 45.0%
!!! TGCGGAATTTTGATTCGAGC+TGG - chr3_1:76061455-76061474 Msa0376040:CDS 45.0%
TGCCATTCAATTACGTTCGG+AGG - chr3_1:76061498-76061517 Msa0376040:CDS 45.0%
GAGCAGAATCATCCTCTTTG+TGG + chr3_1:76061661-76061680 None:intergenic 45.0%
!!! GCTCGTTCTGGTTTTGTTAC+TGG - chr3_1:76061677-76061696 Msa0376040:intron 45.0%
!!! CGTTCTGGTTTTGTTACTGG+TGG - chr3_1:76061680-76061699 Msa0376040:intron 45.0%
! TTGTTACTGGTGGATGCAAG+AGG - chr3_1:76061690-76061709 Msa0376040:intron 45.0%
ATCTCGGCAACAAAGATGAG+AGG + chr3_1:76061805-76061824 None:intergenic 45.0%
!! AGGATCGAAGTATTGGCTGT+TGG - chr3_1:76062015-76062034 Msa0376040:CDS 45.0%
!! GGATCGAAGTATTGGCTGTT+GGG - chr3_1:76062016-76062035 Msa0376040:CDS 45.0%
!! GATCGAAGTATTGGCTGTTG+GGG - chr3_1:76062017-76062036 Msa0376040:CDS 45.0%
!! ATCGAAGTATTGGCTGTTGG+GGG - chr3_1:76062018-76062037 Msa0376040:CDS 45.0%
CTTGGGGTTCTTATCTTTGG+AGG - chr3_1:76062149-76062168 Msa0376040:intron 45.0%
GCTGTGGGTATTCAAGCTTT+AGG - chr3_1:76062615-76062634 Msa0376040:intron 45.0%
!! GTGGGTATTCAAGCTTTAGG+GGG - chr3_1:76062618-76062637 Msa0376040:intron 45.0%
GGTTGTATGTCATGTTCCTG+TGG - chr3_1:76063038-76063057 Msa0376040:intron 45.0%
CTGCTTAGGATTTACACCAC+AGG + chr3_1:76063057-76063076 None:intergenic 45.0%
TTCAAGAAGCAGGCATGTCA+GGG + chr3_1:76063352-76063371 None:intergenic 45.0%
ATTCAAGAAGCAGGCATGTC+AGG + chr3_1:76063353-76063372 None:intergenic 45.0%
CCTTGCCGTGCATTGAAAAA+TGG + chr3_1:76063421-76063440 None:intergenic 45.0%
!! CCATTTTTCAATGCACGGCA+AGG - chr3_1:76063418-76063437 Msa0376040:intron 45.0%
AACAGAACAGGTGACCTTTG+TGG + chr3_1:76063633-76063652 None:intergenic 45.0%
ATATTCCATGCAGGTCATGG+TGG - chr3_1:76063681-76063700 Msa0376040:intron 45.0%
GCTGATATGTTTCACCTGCA+AGG + chr3_1:76064010-76064029 None:intergenic 45.0%
! TACTGCTTCAACCGCTGTTT+TGG - chr3_1:76064085-76064104 Msa0376040:intron 45.0%
CGGAAGAGAATTGAGAATGC+TGG - chr3_1:76064601-76064620 Msa0376040:CDS 45.0%
TGTGCAAGATACAATGGGGT+TGG - chr3_1:76064718-76064737 Msa0376040:CDS 45.0%
GATGACATCGGAAGTTTGTG+CGG - chr3_1:76064802-76064821 Msa0376040:intron 45.0%
ATGACATCGGAAGTTTGTGC+GGG - chr3_1:76064803-76064822 Msa0376040:intron 45.0%
TGCTCCATATATCTCTGCCT+TGG - chr3_1:76065076-76065095 Msa0376040:intron 45.0%
CTTGTGTTTATCTGCTGGTC+AGG - chr3_1:76065170-76065189 Msa0376040:intron 45.0%
TTATCTGCTGGTCAGGTACT+TGG - chr3_1:76065177-76065196 Msa0376040:intron 45.0%
TGTAGCAGAACCTGAAATCC+AGG - chr3_1:76065262-76065281 Msa0376040:intron 45.0%
TCAAGGATCACCTGGATTTC+AGG + chr3_1:76065275-76065294 None:intergenic 45.0%
CAAGGTAATCAAGGATCACC+TGG + chr3_1:76065283-76065302 None:intergenic 45.0%
! AATGTGCCGCTAGTCATGTA+TGG - chr3_1:76065592-76065611 Msa0376040:intron 45.0%
! ATGTGCCGCTAGTCATGTAT+GGG - chr3_1:76065593-76065612 Msa0376040:intron 45.0%
ACCAAAAGACCACCGACAAA+TGG - chr3_1:76065646-76065665 Msa0376040:intron 45.0%
TAGATCATACACGCATGTGC+TGG + chr3_1:76065717-76065736 None:intergenic 45.0%
ACTTCCTATACTAGGGGACA+TGG + chr3_1:76066188-76066207 None:intergenic 45.0%
! GTTTTCTTGCTAAAGTGGGG+AGG + chr3_1:76066251-76066270 None:intergenic 45.0%
AAGGCCTTCTGCATCATCAA+TGG + chr3_1:76066292-76066311 None:intergenic 45.0%
GTGCTTGTTCTTGCAAGTGA+TGG - chr3_1:76066462-76066481 Msa0376040:intron 45.0%
!! TTCTTGCAAGTGATGGACTC+TGG - chr3_1:76066469-76066488 Msa0376040:intron 45.0%
!! TCTTGCAAGTGATGGACTCT+GGG - chr3_1:76066470-76066489 Msa0376040:intron 45.0%
CTGGGATGTAGTACAGAATG+AGG - chr3_1:76066488-76066507 Msa0376040:intron 45.0%
GTGAAAGCAACAAGCAATGC+AGG + chr3_1:76066537-76066556 None:intergenic 45.0%
TCCTTACTTCTGTGCTAGAG+CGG - chr3_1:76066852-76066871 Msa0376040:CDS 45.0%
CACTTTGCCATCCTTTGATC+AGG - chr3_1:76066940-76066959 Msa0376040:CDS 45.0%
ACAGCATCCTGATCAAAGGA+TGG + chr3_1:76066950-76066969 None:intergenic 45.0%
!!! ACGGAAGCTGCTTTTAATCG+TGG - chr3_1:76067019-76067038 Msa0376040:CDS 45.0%
AAGAGTCTGCACATGCATGA+TGG - chr3_1:76067204-76067223 Msa0376040:five_prime_UTR 45.0%
TGAGAATGAGATGAGGGTGG+AGG + chr3_1:76061106-76061125 None:intergenic 50.0%
GGTTCTATGTCAACAAGGGC+TGG - chr3_1:76061611-76061630 Msa0376040:intron 50.0%
GACACAGTATCCTCCACAGA+GGG + chr3_1:76061638-76061657 None:intergenic 50.0%
GGATACTGTGTCCCACAAAG+AGG - chr3_1:76061646-76061665 Msa0376040:intron 50.0%
GAGGATGATTCTGCTCGTTC+TGG - chr3_1:76061665-76061684 Msa0376040:intron 50.0%
TGATCTAGTGGGAAGGGCTA+TGG + chr3_1:76062399-76062418 None:intergenic 50.0%
! CCGACTTGATCTAGTGGGAA+GGG + chr3_1:76062405-76062424 None:intergenic 50.0%
CCCTTCCCACTAGATCAAGT+CGG - chr3_1:76062402-76062421 Msa0376040:intron 50.0%
! TCCGACTTGATCTAGTGGGA+AGG + chr3_1:76062406-76062425 None:intergenic 50.0%
GGCCGTTCAGTGTGCTTATT+TGG - chr3_1:76062692-76062711 Msa0376040:intron 50.0%
ATTCTAGCAAGCAACGAGGC+TGG + chr3_1:76062738-76062757 None:intergenic 50.0%
!! AGAAGAGGGCGTTGAGGATT+TGG + chr3_1:76063385-76063404 None:intergenic 50.0%
!! GATATGAGAAGAGGGCGTTG+AGG + chr3_1:76063391-76063410 None:intergenic 50.0%
TCGCGCTGCTGAGTATTTGA+AGG - chr3_1:76063707-76063726 Msa0376040:intron 50.0%
! TCATTCAAGGGGTCTAGGGT+TGG - chr3_1:76063926-76063945 Msa0376040:intron 50.0%
AAGCAGTAGAACCGTCATCC+CGG + chr3_1:76064073-76064092 None:intergenic 50.0%
GGTTTCCTTGCCTGCTCTTT+GGG - chr3_1:76064435-76064454 Msa0376040:CDS 50.0%
AAGAACCCAAAGAGCAGGCA+AGG + chr3_1:76064443-76064462 None:intergenic 50.0%
AACGCAAGAACCCAAAGAGC+AGG + chr3_1:76064448-76064467 None:intergenic 50.0%
TGTCATGTGGGCAGGTAACT+TGG - chr3_1:76064630-76064649 Msa0376040:CDS 50.0%
CTAGCAATGTCCCGTGCATT+TGG - chr3_1:76065215-76065234 Msa0376040:intron 50.0%
CATACGGTTGCCAAATGCAC+GGG + chr3_1:76065228-76065247 None:intergenic 50.0%
GCATACGGTTGCCAAATGCA+CGG + chr3_1:76065229-76065248 None:intergenic 50.0%
! GCCATTTGTCGGTGGTCTTT+TGG + chr3_1:76065650-76065669 None:intergenic 50.0%
AACTTCTGGCCATTTGTCGG+TGG + chr3_1:76065658-76065677 None:intergenic 50.0%
GAACTGGAGCGATAGCGATT+TGG + chr3_1:76065695-76065714 None:intergenic 50.0%
ATACACGCATGTGCTGGAAC+TGG + chr3_1:76065711-76065730 None:intergenic 50.0%
GAAGCCATGTCCCCTAGTAT+AGG - chr3_1:76066181-76066200 Msa0376040:intron 50.0%
TCCGCTCTAGCACAGAAGTA+AGG + chr3_1:76066856-76066875 None:intergenic 50.0%
GGCAGCTGCTCGTAAGTTAA+CGG - chr3_1:76067000-76067019 Msa0376040:CDS 50.0%
GGACACAGTATCCTCCACAG+AGG + chr3_1:76061639-76061658 None:intergenic 55.0%
TAGGGGGAAGAGAGTGACCA+TGG - chr3_1:76062634-76062653 Msa0376040:intron 55.0%
GCACACTGAACGGCCATCAA+TGG + chr3_1:76062687-76062706 None:intergenic 55.0%
!! AGAGGGCGTTGAGGATTTGG+TGG + chr3_1:76063382-76063401 None:intergenic 55.0%
GAGAACCACCATGACCTGCA+TGG + chr3_1:76063689-76063708 None:intergenic 55.0%
!! AGGGGTCTAGGGTTGGTTCA+TGG - chr3_1:76063933-76063952 Msa0376040:intron 55.0%
GGGTTTCCTTGCCTGCTCTT+TGG - chr3_1:76064434-76064453 Msa0376040:CDS 55.0%
!! ATGCTGGGGGTGTTGTCATG+TGG - chr3_1:76064617-76064636 Msa0376040:CDS 55.0%
!! TGCTGGGGGTGTTGTCATGT+GGG - chr3_1:76064618-76064637 Msa0376040:CDS 55.0%
TCTGCTGGTCAGGTACTTGG+AGG - chr3_1:76065180-76065199 Msa0376040:intron 55.0%
CTGCTGGTCAGGTACTTGGA+GGG - chr3_1:76065181-76065200 Msa0376040:intron 55.0%
TGGTCAGGTACTTGGAGGGT+TGG - chr3_1:76065185-76065204 Msa0376040:intron 55.0%
TCAGGTACTTGGAGGGTTGG+AGG - chr3_1:76065188-76065207 Msa0376040:intron 55.0%
CAGGTACTTGGAGGGTTGGA+GGG - chr3_1:76065189-76065208 Msa0376040:intron 55.0%
AGGTACTTGGAGGGTTGGAG+GGG - chr3_1:76065190-76065209 Msa0376040:intron 55.0%
CAAGCAATGCAGGGCTGAGA+AGG + chr3_1:76066527-76066546 None:intergenic 55.0%
GGCTTGTAGAGGCTCCAGTT+TGG - chr3_1:76067364-76067383 Msa0376040:five_prime_UTR 55.0%
AACAAGGGCTGGACCCTCTG+TGG - chr3_1:76061622-76061641 Msa0376040:intron 60.0%
!! GTATTGGCTGTTGGGGGTCG+TGG - chr3_1:76062024-76062043 Msa0376040:CDS 60.0%
GGGGAAGAGAGTGACCATGG+AGG - chr3_1:76062637-76062656 Msa0376040:intron 60.0%
!! TGCTGTTTCTCTCGCACGCG+CGG - chr3_1:76066964-76066983 Msa0376040:CDS 60.0%
AAGGGCTGGACCCTCTGTGG+AGG - chr3_1:76061625-76061644 Msa0376040:intron 65.0%
!! GGGGGTGTTGTCATGTGGGC+AGG - chr3_1:76064622-76064641 Msa0376040:CDS 65.0%
TTCTCTCGCACGCGCGGAAG+AGG - chr3_1:76066970-76066989 Msa0376040:CDS 65.0%
TCTCTCGCACGCGCGGAAGA+GGG - chr3_1:76066971-76066990 Msa0376040:CDS 65.0%
ACGCGCGGAAGAGGGAGCTG+AGG - chr3_1:76066979-76066998 Msa0376040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76061059 76067438 76061059 ID=Msa0376040;Name=Msa0376040
chr3_1 mRNA 76061059 76067438 76061059 ID=Msa0376040-mRNA-1;Parent=Msa0376040;Name=Msa0376040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=289|1|1|1|0.75|0.44|9|263|438
chr3_1 exon 76061059 76061313 76061059 ID=Msa0376040-mRNA-1:exon:17912;Parent=Msa0376040-mRNA-1
chr3_1 exon 76061336 76061535 76061336 ID=Msa0376040-mRNA-1:exon:17911;Parent=Msa0376040-mRNA-1
chr3_1 exon 76061988 76062062 76061988 ID=Msa0376040-mRNA-1:exon:17910;Parent=Msa0376040-mRNA-1
chr3_1 exon 76063214 76063305 76063214 ID=Msa0376040-mRNA-1:exon:17909;Parent=Msa0376040-mRNA-1
chr3_1 exon 76063854 76063940 76063854 ID=Msa0376040-mRNA-1:exon:17908;Parent=Msa0376040-mRNA-1
chr3_1 exon 76064324 76064803 76064324 ID=Msa0376040-mRNA-1:exon:17907;Parent=Msa0376040-mRNA-1
chr3_1 exon 76065772 76065899 76065772 ID=Msa0376040-mRNA-1:exon:17906;Parent=Msa0376040-mRNA-1
chr3_1 exon 76066786 76067053 76066786 ID=Msa0376040-mRNA-1:exon:17905;Parent=Msa0376040-mRNA-1
chr3_1 exon 76067155 76067438 76067155 ID=Msa0376040-mRNA-1:exon:17904;Parent=Msa0376040-mRNA-1
chr3_1 five_prime_UTR 76067155 76067438 76067155 ID=Msa0376040-mRNA-1:five_prime_utr;Parent=Msa0376040-mRNA-1
chr3_1 five_prime_UTR 76067049 76067053 76067049 ID=Msa0376040-mRNA-1:five_prime_utr;Parent=Msa0376040-mRNA-1
chr3_1 CDS 76066786 76067048 76066786 ID=Msa0376040-mRNA-1:cds;Parent=Msa0376040-mRNA-1
chr3_1 CDS 76065772 76065899 76065772 ID=Msa0376040-mRNA-1:cds;Parent=Msa0376040-mRNA-1
chr3_1 CDS 76064324 76064803 76064324 ID=Msa0376040-mRNA-1:cds;Parent=Msa0376040-mRNA-1
chr3_1 CDS 76063854 76063940 76063854 ID=Msa0376040-mRNA-1:cds;Parent=Msa0376040-mRNA-1
chr3_1 CDS 76063214 76063305 76063214 ID=Msa0376040-mRNA-1:cds;Parent=Msa0376040-mRNA-1
chr3_1 CDS 76061988 76062062 76061988 ID=Msa0376040-mRNA-1:cds;Parent=Msa0376040-mRNA-1
chr3_1 CDS 76061344 76061535 76061344 ID=Msa0376040-mRNA-1:cds;Parent=Msa0376040-mRNA-1
chr3_1 three_prime_UTR 76061336 76061343 76061336 ID=Msa0376040-mRNA-1:three_prime_utr;Parent=Msa0376040-mRNA-1
chr3_1 three_prime_UTR 76061059 76061313 76061059 ID=Msa0376040-mRNA-1:three_prime_utr;Parent=Msa0376040-mRNA-1
Gene Sequence

>Msa0376040

ATGGTATGCGGAATTTTGATTCGAGCTGGAATTTTGACCAAGAGATTGTTGCCATTCAATTACGTTCGGAGGAAGTGTTTGCAAAGAGTTTTTGTTGTTCATTCACAATTTGTTGCGAATCGCGTGTTTAAGAATAAGTACATAGGGATGATGGTTGATACAGGTTCTATGTCAACAAGGGCTGGACCCTCTGTGGAGGATACTGTGTCCCACAAAGAGGATGATTCTGCTCGTTCTGGTTTTGTTACTGGTGGATGCAAGAGTGAAGATGAAAGACTTAGCTGTGGGTATTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAGGATTTCTATGATATTAAGACATCAACCATTGATGGCCGTTCAGTGTGCTTATTTGGAATATTTGATGGTCATGGTGGTTCTCGCGCTGCTGAGTATTTGAAGGATCATCTTTTTGAGAATCTCATGAAGCATCCGAAGTTTTTGACAGATACCAAATTGGCTATAAGTGTGTTTGAATTTCACTTATTATTTCTTGTAATATTGAAGACATGTCACTTTTTACCATTTGTTTATACGTTCTTGTCAAATCTGACATCATCGGAACCATTTGAGTATGCATTTATTGTGTTAGTCCTATTTCATTCAAGGGGTCTAGGGTTGGTTCATGGAGTGCTTTTCATTTTTCAGTCTGTTATGTGGATGTTTATTAACTTAAGTAACCTTGCAGGTGAAACATATCAGCAGACGGATGCTGAGTTTTTGAACTCTGAAAAAGATAATTTCCGGGATGACGGTTCTACTGCTTCAACCGCTGTTTTGGTTGATAACCGTCTTTATGTTGCTAATGTTGGAGATTCTAGAACTGTTATATCAAAAGCCGGAAAAGCAATTGCTCTCTCTGAAGATCATAAACCTAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCCCGTGCATTTGGCAACCGTATGCTGAAGCCATTTGTTGTAGCAGAACCTGAAATCCAGGACCAGGAGATAGATGAAGAAACTGAGGTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAGGATGCTGTTTCTCTCGCACGCGCGGAAGAGGGAGCTGAGGCAGCTGCTCGTAAGTTAACGGAAGCTGCTTTTAATCGTGGTAGTGCAGATAACATTACTTGTATTGTGGTACGATTCAATCATGAAAAAAGACACGCAGCTAATCCTGATAAAGCTAGTACAGCTAGCAGTCAGCATGAGCAGAGACAATGA
Protein sequence

>Msa0376040

MVCGILIRAGILTKRLLPFNYVRRKCLQRVFVVHSQFVANRVFKNKYIGMMVDTGSMSTRAGPSVEDTVSHKEDDSARSGFVTGGCKSEDERLSCGYSSFRGKRVTMEDFYDIKTSTIDGRSVCLFGIFDGHGGSRAAEYLKDHLFENLMKHPKFLTDTKLAISVFEFHLLFLVILKTCHFLPFVYTFLSNLTSSEPFEYAFIVLVLFHSRGLGLVHGVLFIFQSVMWMFINLSNLAGETYQQTDAEFLNSEKDNFRDDGSTASTAVLVDNRLYVANVGDSRTVISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQEIDEETEVLVLASDGLWDVVQNEDAVSLARAEEGAEAAARKLTEAAFNRGSADNITCIVVRFNHEKRHAANPDKASTASSQHEQRQ*