Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187040 | XP_003610744.2 | 97.044 | 778 | 23 | 0 | 3 | 780 | 1 | 778 | 0.0 | 1555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187040 | sp|Q9LUI3|TSO1_ARATH | 43.429 | 799 | 313 | 32 | 9 | 776 | 1 | 691 | 2.76e-160 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187040 | G7K3P9 | 97.044 | 778 | 23 | 0 | 3 | 780 | 1 | 778 | 0.0 | 1555 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0187040 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030070 | Msa0187040 | 0.820980 | 5.149330e-53 | -8.615850e-47 |
| Msa0032980 | Msa0187040 | 0.825872 | 3.698233e-54 | -8.615850e-47 |
| Msa0050150 | Msa0187040 | 0.822194 | 2.699087e-53 | -8.615850e-47 |
| Msa0050530 | Msa0187040 | 0.816570 | 5.165962e-52 | -8.615850e-47 |
| Msa0090440 | Msa0187040 | 0.807816 | 4.201093e-50 | -8.615850e-47 |
| Msa0091350 | Msa0187040 | 0.835928 | 1.260758e-56 | -8.615850e-47 |
| Msa0100600 | Msa0187040 | 0.835364 | 1.752113e-56 | -8.615850e-47 |
| Msa0100890 | Msa0187040 | 0.803757 | 2.993148e-49 | -8.615850e-47 |
| Msa0108630 | Msa0187040 | 0.815721 | 7.995890e-52 | -8.615850e-47 |
| Msa0125590 | Msa0187040 | 0.839247 | 1.776468e-57 | -8.615850e-47 |
| Msa0127340 | Msa0187040 | 0.811072 | 8.406971e-51 | -8.615850e-47 |
| Msa0165830 | Msa0187040 | 0.816324 | 5.865501e-52 | -8.615850e-47 |
| Msa0170070 | Msa0187040 | 0.814560 | 1.447615e-51 | -8.615850e-47 |
| Msa0186180 | Msa0187040 | 0.800846 | 1.190136e-48 | -8.615850e-47 |
| Msa0187040 | Msa0190730 | 0.802762 | 4.809628e-49 | -8.615850e-47 |
| Msa0187040 | Msa0204970 | 0.831833 | 1.334075e-55 | -8.615850e-47 |
| Msa0187040 | Msa0249870 | 0.818497 | 1.900571e-52 | -8.615850e-47 |
| Msa0187040 | Msa0260570 | 0.801969 | 7.007097e-49 | -8.615850e-47 |
| Msa0187040 | Msa0281540 | 0.807540 | 4.808747e-50 | -8.615850e-47 |
| Msa0187040 | Msa0349550 | 0.803392 | 3.562531e-49 | -8.615850e-47 |
| Msa0187040 | Msa0368920 | 0.820753 | 5.805485e-53 | -8.615850e-47 |
| Msa0187040 | Msa0373170 | 0.836865 | 7.282945e-57 | -8.615850e-47 |
| Msa0187040 | Msa0373590 | 0.803738 | 3.020234e-49 | -8.615850e-47 |
| Msa0187040 | Msa0382230 | 0.810840 | 9.436654e-51 | -8.615850e-47 |
| Msa0187040 | Msa0401060 | 0.810845 | 9.412261e-51 | -8.615850e-47 |
| Msa0187040 | Msa0416210 | 0.812291 | 4.565764e-51 | -8.615850e-47 |
| Msa0187040 | Msa0421130 | 0.812340 | 4.453736e-51 | -8.615850e-47 |
| Msa0187040 | Msa0421750 | 0.840448 | 8.644044e-58 | -8.615850e-47 |
| Msa0187040 | Msa0433630 | 0.857722 | 1.345100e-62 | -8.615850e-47 |
| Msa0187040 | Msa0433760 | 0.805080 | 1.586231e-49 | -8.615850e-47 |
| Msa0187040 | Msa0443570 | 0.806753 | 7.058320e-50 | -8.615850e-47 |
| Msa0187040 | Msa0447870 | 0.805058 | 1.603677e-49 | -8.615850e-47 |
| Msa0187040 | Msa0466880 | 0.806999 | 6.262200e-50 | -8.615850e-47 |
| Msa0187040 | Msa0467690 | 0.838331 | 3.063957e-57 | -8.615850e-47 |
| Msa0187040 | Msa0468700 | 0.814836 | 1.257604e-51 | -8.615850e-47 |
| Msa0187040 | Msa0477480 | 0.832226 | 1.066735e-55 | -8.615850e-47 |
| Msa0187040 | Msa0477630 | 0.808702 | 2.720461e-50 | -8.615850e-47 |
| Msa0187040 | Msa0506880 | 0.800826 | 1.201046e-48 | -8.615850e-47 |
| Msa0187040 | Msa0513640 | 0.833145 | 6.308403e-56 | -8.615850e-47 |
| Msa0187040 | Msa0514020 | 0.847754 | 9.465393e-60 | -8.615850e-47 |
| Msa0187040 | Msa0514580 | 0.816744 | 4.723171e-52 | -8.615850e-47 |
| Msa0187040 | Msa0520680 | 0.809229 | 2.097827e-50 | -8.615850e-47 |
| Msa0187040 | Msa0521510 | 0.862051 | 6.660626e-64 | -8.615850e-47 |
| Msa0187040 | Msa0521530 | 0.847300 | 1.261975e-59 | -8.615850e-47 |
| Msa0187040 | Msa0524320 | 0.803795 | 2.939083e-49 | -8.615850e-47 |
| Msa0187040 | Msa0524430 | 0.806941 | 6.439812e-50 | -8.615850e-47 |
| Msa0187040 | Msa0527850 | 0.803735 | 3.025549e-49 | -8.615850e-47 |
| Msa0187040 | Msa0544410 | 0.807246 | 5.551536e-50 | -8.615850e-47 |
| Msa0187040 | Msa0553750 | 0.835386 | 1.729706e-56 | -8.615850e-47 |
| Msa0187040 | Msa0561560 | 0.836141 | 1.113253e-56 | -8.615850e-47 |
| Msa0187040 | Msa0572830 | 0.855970 | 4.412462e-62 | -8.615850e-47 |
| Msa0187040 | Msa0607800 | 0.835957 | 1.239796e-56 | -8.615850e-47 |
| Msa0187040 | Msa0615630 | 0.806674 | 7.333539e-50 | -8.615850e-47 |
| Msa0187040 | Msa0618990 | 0.807631 | 4.600686e-50 | -8.615850e-47 |
| Msa0187040 | Msa0620500 | 0.830225 | 3.309904e-55 | -8.615850e-47 |
| Msa0187040 | Msa0620510 | 0.812190 | 4.802368e-51 | -8.615850e-47 |
| Msa0187040 | Msa0625620 | 0.802153 | 6.422268e-49 | -8.615850e-47 |
| Msa0187040 | Msa0640800 | 0.819297 | 1.250376e-52 | -8.615850e-47 |
| Msa0187040 | Msa0647050 | 0.800480 | 1.413303e-48 | -8.615850e-47 |
| Msa0187040 | Msa0647440 | 0.816292 | 5.961428e-52 | -8.615850e-47 |
| Msa0187040 | Msa0648040 | 0.832359 | 9.887050e-56 | -8.615850e-47 |
| Msa0187040 | Msa0654740 | 0.826847 | 2.166926e-54 | -8.615850e-47 |
| Msa0187040 | Msa0688380 | 0.825116 | 5.585391e-54 | -8.615850e-47 |
| Msa0187040 | Msa0689830 | 0.801682 | 8.024613e-49 | -8.615850e-47 |
| Msa0187040 | Msa0690740 | 0.838785 | 2.339056e-57 | -8.615850e-47 |
| Msa0187040 | Msa0698730 | 0.812883 | 3.388026e-51 | -8.615850e-47 |
| Msa0187040 | Msa0707260 | 0.855554 | 5.835013e-62 | -8.615850e-47 |
| Msa0187040 | Msa0717830 | 0.813468 | 2.520514e-51 | -8.615850e-47 |
| Msa0187040 | Msa0717900 | 0.837021 | 6.646838e-57 | -8.615850e-47 |
| Msa0187040 | Msa0720280 | 0.825372 | 4.859826e-54 | -8.615850e-47 |
| Msa0187040 | Msa0751200 | 0.953720 | 1.470752e-111 | -8.615850e-47 |
| Msa0187040 | Msa0751250 | 0.945988 | 1.084492e-104 | -8.615850e-47 |
| Msa0187040 | Msa0774060 | 0.802572 | 5.265009e-49 | -8.615850e-47 |
| Msa0187040 | Msa0795060 | 0.901697 | 2.060870e-78 | -8.615850e-47 |
| Msa0187040 | Msa0803140 | 0.822764 | 1.989260e-53 | -8.615850e-47 |
| Msa0187040 | Msa0816080 | 0.831413 | 1.693261e-55 | -8.615850e-47 |
| Msa0187040 | Msa0816230 | 0.828173 | 1.041269e-54 | -8.615850e-47 |
| Msa0187040 | Msa0831620 | 0.972660 | 3.954064e-135 | -8.615850e-47 |
| Msa0187040 | Msa0837680 | 0.817375 | 3.407903e-52 | -8.615850e-47 |
| Msa0187040 | Msa0846900 | 0.822745 | 2.009424e-53 | -8.615850e-47 |
| Msa0187040 | Msa0861440 | 0.802792 | 4.741549e-49 | -8.615850e-47 |
| Msa0187040 | Msa0900760 | 0.819646 | 1.041429e-52 | -8.615850e-47 |
| Msa0187040 | Msa0909760 | 0.826238 | 3.027605e-54 | -8.615850e-47 |
| Msa0187040 | Msa0926310 | 0.856994 | 2.207932e-62 | -8.615850e-47 |
| Msa0187040 | Msa0945900 | 0.802274 | 6.062392e-49 | -8.615850e-47 |
| Msa0187040 | Msa0966710 | 0.804203 | 2.417541e-49 | -8.615850e-47 |
| Msa0187040 | Msa0976380 | 0.807692 | 4.465059e-50 | -8.615850e-47 |
| Msa0187040 | Msa1000780 | 0.844613 | 6.784190e-59 | -8.615850e-47 |
| Msa0187040 | Msa1076020 | 0.825458 | 4.637357e-54 | -8.615850e-47 |
| Msa0187040 | Msa1078080 | 0.801052 | 1.080125e-48 | -8.615850e-47 |
| Msa0187040 | Msa1078860 | 0.812491 | 4.127263e-51 | -8.615850e-47 |
| Msa0187040 | Msa1144990 | 0.805533 | 1.275250e-49 | -8.615850e-47 |
| Msa0187040 | Msa1163180 | 0.808289 | 3.332796e-50 | -8.615850e-47 |
| Msa0187040 | Msa1169690 | 0.818615 | 1.787075e-52 | -8.615850e-47 |
| Msa0187040 | Msa1215980 | 0.829968 | 3.823998e-55 | -8.615850e-47 |
| Msa0187040 | Msa1215990 | 0.812715 | 3.688070e-51 | -8.615850e-47 |
| Msa0187040 | Msa1240940 | 0.804719 | 1.887541e-49 | -8.615850e-47 |
| Msa0187040 | Msa1254540 | 0.804035 | 2.620852e-49 | -8.615850e-47 |
| Msa0187040 | Msa1282300 | 0.819514 | 1.116012e-52 | -8.615850e-47 |
| Msa0187040 | Msa1294460 | 0.808448 | 3.082027e-50 | -8.615850e-47 |
| Msa0187040 | Msa1294790 | 0.814181 | 1.755853e-51 | -8.615850e-47 |
| Msa0187040 | Msa1301820 | 0.812477 | 4.156977e-51 | -8.615850e-47 |
| Msa0187040 | Msa1301980 | 0.808584 | 2.883212e-50 | -8.615850e-47 |
| Msa0187040 | Msa1306570 | 0.803976 | 2.695947e-49 | -8.615850e-47 |
| Msa0187040 | Msa1332950 | 0.814239 | 1.704772e-51 | -8.615850e-47 |
| Msa0187040 | Msa1339170 | 0.814846 | 1.251219e-51 | -8.615850e-47 |
| Msa0187040 | Msa1339230 | 0.821554 | 3.796191e-53 | -8.615850e-47 |
| Msa0187040 | Msa1375350 | 0.806737 | 7.115052e-50 | -8.615850e-47 |
| Msa0187040 | Msa1387500 | 0.820185 | 7.840602e-53 | -8.615850e-47 |
| Msa0187040 | Msa1389820 | 0.806399 | 8.385053e-50 | -8.615850e-47 |
| Msa0187040 | Msa1390210 | 0.804351 | 2.252061e-49 | -8.615850e-47 |
| Msa0187040 | Msa1393560 | 0.838757 | 2.379409e-57 | -8.615850e-47 |
| Msa0187040 | Msa1399190 | 0.844255 | 8.468693e-59 | -8.615850e-47 |
| Msa0187040 | Msa1406720 | 0.801418 | 9.090501e-49 | -8.615850e-47 |
| Msa0187040 | Msa1424590 | 0.809392 | 1.935393e-50 | -8.615850e-47 |
| Msa0187040 | Msa1426320 | 0.852374 | 4.813097e-61 | -8.615850e-47 |
| Msa0187040 | Msa1439730 | 0.803799 | 2.934332e-49 | -8.615850e-47 |
| Msa0187040 | Msa1442260 | 0.810574 | 1.077221e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187040 | MtrunA17_Chr5g0394661 | 97.044 | 778 | 23 | 0 | 3 | 780 | 1 | 778 | 0.0 | 1555 |
| Msa0187040 | MtrunA17_Chr1g0205031 | 33.536 | 659 | 285 | 20 | 15 | 634 | 5 | 549 | 5.89e-78 | 262 |
| Msa0187040 | MtrunA17_Chr1g0149101 | 29.847 | 717 | 373 | 26 | 9 | 651 | 1 | 661 | 4.41e-67 | 238 |
| Msa0187040 | MtrunA17_Chr4g0030281 | 90.625 | 96 | 9 | 0 | 153 | 248 | 74 | 169 | 1.34e-50 | 189 |
| Msa0187040 | MtrunA17_Chr6g0485811 | 44.079 | 152 | 82 | 2 | 470 | 619 | 106 | 256 | 1.55e-30 | 127 |
| Msa0187040 | MtrunA17_Chr8g0390351 | 41.447 | 152 | 83 | 2 | 473 | 619 | 61 | 211 | 2.02e-29 | 124 |
| Msa0187040 | MtrunA17_Chr3g0139951 | 48.800 | 125 | 60 | 4 | 490 | 613 | 148 | 269 | 1.18e-26 | 113 |
| Msa0187040 | MtrunA17_Chr1g0205001 | 58.333 | 60 | 25 | 0 | 478 | 537 | 161 | 220 | 5.62e-16 | 77.8 |
| Msa0187040 | MtrunA17_Chr1g0205011 | 37.500 | 160 | 77 | 5 | 318 | 475 | 3 | 141 | 2.31e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0187040 | AT3G22780.1 | 43.429 | 799 | 313 | 32 | 9 | 776 | 1 | 691 | 2.81e-161 | 484 |
| Msa0187040 | AT4G14770.1 | 44.556 | 799 | 285 | 32 | 9 | 777 | 1 | 671 | 2.54e-157 | 473 |
| Msa0187040 | AT4G14770.3 | 44.231 | 780 | 281 | 30 | 24 | 777 | 1 | 652 | 1.46e-152 | 460 |
| Msa0187040 | AT4G14770.2 | 44.344 | 778 | 279 | 30 | 26 | 777 | 2 | 651 | 4.42e-152 | 459 |
| Msa0187040 | AT3G22760.1 | 40.633 | 790 | 268 | 33 | 9 | 779 | 1 | 608 | 6.93e-135 | 413 |
| Msa0187040 | AT3G22760.2 | 43.932 | 585 | 209 | 24 | 209 | 779 | 6 | 485 | 3.39e-116 | 360 |
| Msa0187040 | AT3G04850.1 | 35.266 | 638 | 318 | 23 | 9 | 613 | 1 | 576 | 6.56e-85 | 283 |
| Msa0187040 | AT5G25790.2 | 46.923 | 130 | 68 | 1 | 490 | 619 | 95 | 223 | 4.89e-30 | 125 |
| Msa0187040 | AT5G25790.1 | 46.923 | 130 | 68 | 1 | 490 | 619 | 95 | 223 | 5.30e-30 | 124 |
| Msa0187040 | AT2G20110.3 | 36.607 | 224 | 127 | 5 | 403 | 613 | 20 | 241 | 7.67e-30 | 125 |
| Msa0187040 | AT5G25790.3 | 48.462 | 130 | 62 | 2 | 490 | 619 | 95 | 219 | 9.52e-30 | 124 |
| Msa0187040 | AT2G20110.1 | 36.607 | 224 | 127 | 5 | 403 | 613 | 20 | 241 | 1.28e-29 | 125 |
| Msa0187040 | AT2G20110.2 | 36.607 | 224 | 127 | 5 | 403 | 613 | 20 | 241 | 1.37e-29 | 125 |
| Msa0187040 | AT4G29000.1 | 45.385 | 130 | 70 | 1 | 490 | 619 | 132 | 260 | 3.91e-29 | 124 |
| Msa0187040 | AT3G16160.1 | 34.979 | 243 | 129 | 9 | 490 | 720 | 66 | 291 | 3.26e-23 | 102 |
Find 196 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACTGGTTCTGGATATT+TGG | 0.157115 | 2_1:-1785909 | Msa0187040:CDS |
| TCACCACCACGGAGAATTTC+TGG | 0.214113 | 2_1:+1785809 | None:intergenic |
| GATTGAGACCAAAGAGAATT+TGG | 0.224349 | 2_1:+1785866 | None:intergenic |
| GCAGATTTAACTGGCTTTAT+AGG | 0.232000 | 2_1:+1789384 | None:intergenic |
| TATCTTCTAACCCCAGTTTC+AGG | 0.233911 | 2_1:+1786654 | None:intergenic |
| CCGAGAGATGCTGATGTTCT+TGG | 0.249290 | 2_1:+1787596 | None:intergenic |
| AATTAACATATTAGCAGAAT+TGG | 0.258385 | 2_1:+1788723 | None:intergenic |
| GGAAAATTGTAACCATTCTA+AGG | 0.259580 | 2_1:+1785635 | None:intergenic |
| CAAATTGAAAATTTGACTTC+TGG | 0.261230 | 2_1:-1787667 | Msa0187040:CDS |
| CGCTTTCGCGTCTTAATTCC+AGG | 0.270053 | 2_1:-1789062 | Msa0187040:CDS |
| AAGATTTACATGGTTGATTC+AGG | 0.271475 | 2_1:-1788595 | Msa0187040:CDS |
| TGGCAATTCAAATGAGAAAA+TGG | 0.271811 | 2_1:-1788467 | Msa0187040:CDS |
| CAACACCTTTACGGCTTTCC+AGG | 0.273435 | 2_1:-1786075 | Msa0187040:intron |
| TTTGCCTTTGTGATCCTTTA+CGG | 0.280925 | 2_1:+1787690 | None:intergenic |
| TCAGCACTTCGGATGACTTT+AGG | 0.288928 | 2_1:+1786684 | None:intergenic |
| GCTGACTCTGTGCCTGAAAC+TGG | 0.291755 | 2_1:-1786666 | Msa0187040:CDS |
| ATTACTTGAATAGTACATTA+TGG | 0.302004 | 2_1:+1785486 | None:intergenic |
| GTTACAACCCTCACTGGTTC+TGG | 0.305204 | 2_1:-1785917 | Msa0187040:CDS |
| TTGCGAAACCAAATTCTCTT+TGG | 0.309179 | 2_1:-1785874 | Msa0187040:CDS |
| TGTACAGGTTCTGCTTCTAT+AGG | 0.312813 | 2_1:-1786214 | Msa0187040:intron |
| TCTTTAGCCTTTGATTCTTC+CGG | 0.320531 | 2_1:+1789141 | None:intergenic |
| GAAATATTGTGAATGCTATC+AGG | 0.323011 | 2_1:-1786485 | Msa0187040:intron |
| TTTGAAGAACAGTATCTTCA+TGG | 0.328335 | 2_1:+1786748 | None:intergenic |
| ATTTCTGGCATTTCATCATC+TGG | 0.343435 | 2_1:+1785824 | None:intergenic |
| GTACAGGTTCTGCTTCTATA+GGG | 0.354552 | 2_1:-1786213 | Msa0187040:intron |
| CCCTTCACATCTGCAGCTAA+TGG | 0.355774 | 2_1:+1786369 | None:intergenic |
| TACATTAGAGGATGAGGATT+AGG | 0.362104 | 2_1:+1790412 | None:intergenic |
| AGCATTCACAATATTTCTTT+AGG | 0.370111 | 2_1:+1786491 | None:intergenic |
| TCCTGGTACATTGTTGTAGC+AGG | 0.370487 | 2_1:+1788629 | None:intergenic |
| CTGGGGTCTCAACACCTTTA+CGG | 0.372102 | 2_1:-1786084 | Msa0187040:CDS |
| TGATGAGGATAACACACTTT+TGG | 0.374598 | 2_1:-1788893 | Msa0187040:CDS |
| AATATCATCTGAAAGAGAAT+TGG | 0.381101 | 2_1:-1787560 | Msa0187040:CDS |
| TTCGCCATGATTAAGTTAGT+TGG | 0.383358 | 2_1:-1785408 | Msa0187040:three_prime_UTR |
| ACATTGAGTTTGTTTCAGTA+TGG | 0.385024 | 2_1:-1785530 | Msa0187040:three_prime_UTR |
| TTCGCAAAGATGCATGTTGC+CGG | 0.388684 | 2_1:-1787743 | Msa0187040:CDS |
| ATTAACATATTAGCAGAATT+GGG | 0.391197 | 2_1:+1788724 | None:intergenic |
| CTCTTCGCCTAACTGTGAAA+TGG | 0.395894 | 2_1:-1785735 | Msa0187040:CDS |
| GTTGAGACCCCAGCAGAATC+AGG | 0.402631 | 2_1:+1786094 | None:intergenic |
| GTAATGGTTATAATAATTAC+CGG | 0.403464 | 2_1:-1785468 | Msa0187040:three_prime_UTR |
| GTAATGTGAGCAGATTTAAC+TGG | 0.404452 | 2_1:+1789375 | None:intergenic |
| GCATGTACTTTGGTTGTTGA+AGG | 0.410378 | 2_1:+1785350 | None:intergenic |
| TGGCTTTCCCTTTGATGAAA+AGG | 0.412518 | 2_1:+1785952 | None:intergenic |
| CTGTCACACACCGTGGCATT+CGG | 0.418651 | 2_1:-1787909 | Msa0187040:CDS |
| TAGAGAGAGTGGTGTTGATC+TGG | 0.424346 | 2_1:+1790248 | None:intergenic |
| AATAAATTGTACTCAAATGA+AGG | 0.424880 | 2_1:-1789102 | Msa0187040:CDS |
| GTGAAAGTTCAGACTGTGAT+TGG | 0.429225 | 2_1:-1788759 | Msa0187040:CDS |
| GGCTTTCCCTTTGATGAAAA+GGG | 0.433636 | 2_1:+1785953 | None:intergenic |
| TTGTTGATATAGTTGAATAC+TGG | 0.434917 | 2_1:+1789414 | None:intergenic |
| CATCCCTCAATTTCTCCGAC+TGG | 0.435335 | 2_1:+1787331 | None:intergenic |
| AATTCCAACTAACTTAATCA+TGG | 0.435793 | 2_1:+1785404 | None:intergenic |
| ACGGATGATGGCTAACATAC+AGG | 0.438256 | 2_1:+1785613 | None:intergenic |
| TTGTTTGTTTGTTACATTAG+AGG | 0.439385 | 2_1:+1790400 | None:intergenic |
| TCTTCGCCTAACTGTGAAAT+GGG | 0.439819 | 2_1:-1785734 | Msa0187040:CDS |
| GGTTATGATCCTACACTTTG+TGG | 0.443504 | 2_1:-1788916 | Msa0187040:CDS |
| ACAAAATCGCTGAGTCGTAT+AGG | 0.443839 | 2_1:+1788655 | None:intergenic |
| TCAGTAGCCATGTAAGCTAT+AGG | 0.446368 | 2_1:+1787493 | None:intergenic |
| GCACAGGACAATCTTGCTAA+TGG | 0.451745 | 2_1:-1788502 | Msa0187040:CDS |
| TCTGCTTCTATAGGGATAGA+AGG | 0.452212 | 2_1:-1786205 | Msa0187040:CDS |
| AATTGGACCCATCCGACAAT+GGG | 0.452280 | 2_1:-1787543 | Msa0187040:CDS |
| GAAGGGTGCAAGAACGCATT+TGG | 0.452291 | 2_1:-1786352 | Msa0187040:CDS |
| GTGTTGATCTGGTTCCTCTC+TGG | 0.453836 | 2_1:+1790259 | None:intergenic |
| GCAATGATGTAGAGCTGGTC+AGG | 0.456666 | 2_1:+1787632 | None:intergenic |
| CTCACACATCACCCTTAGAA+TGG | 0.457771 | 2_1:-1785647 | Msa0187040:exon |
| GAAGATCATCCTGATTCTGC+TGG | 0.460122 | 2_1:-1786103 | Msa0187040:CDS |
| AATCTTCTGATCATCATTCC+TGG | 0.460270 | 2_1:+1788612 | None:intergenic |
| CTGACTCTGTGCCTGAAACT+GGG | 0.462110 | 2_1:-1786665 | Msa0187040:CDS |
| AGAGCCAGTCGGAGAAATTG+AGG | 0.468017 | 2_1:-1787335 | Msa0187040:CDS |
| CAGTATAATTGTGGTAGTCC+TGG | 0.468942 | 2_1:-1788937 | Msa0187040:CDS |
| AGCACTTTCATGCAATTCCC+TGG | 0.472085 | 2_1:+1789044 | None:intergenic |
| GTTTGTTACATTAGAGGATG+AGG | 0.474705 | 2_1:+1790406 | None:intergenic |
| CATAGAACCTTGTTCCTGTC+AGG | 0.475825 | 2_1:-1786790 | Msa0187040:CDS |
| AGATGCATGTTGCCGGGTAT+CGG | 0.479372 | 2_1:-1787736 | Msa0187040:CDS |
| GCTAATGGTTCTTCGATGAC+TGG | 0.480583 | 2_1:-1788487 | Msa0187040:CDS |
| AGAATGAGTAAATTCAAGAA+TGG | 0.480637 | 2_1:+1790454 | None:intergenic |
| CTTCATCTCCAAATGGCAAA+AGG | 0.482506 | 2_1:-1785760 | Msa0187040:CDS |
| TAGCCATGTAAGCTATAGGC+TGG | 0.482786 | 2_1:+1787497 | None:intergenic |
| GAGGCTGAATTGCATCTTCA+AGG | 0.483131 | 2_1:-1788805 | Msa0187040:CDS |
| CATATTCATTATTTCAGAGA+GGG | 0.484124 | 2_1:+1790306 | None:intergenic |
| CCCTTTGATGAAAAGGGCAT+CGG | 0.485976 | 2_1:+1785959 | None:intergenic |
| CTCCTAGTCGCAGAGGTGGC+AGG | 0.487950 | 2_1:-1785706 | Msa0187040:CDS |
| CACCACTCTCTCTAAGTTCG+AGG | 0.493672 | 2_1:-1790239 | Msa0187040:intron |
| GAAATGTCCAAAATCACAAC+AGG | 0.493831 | 2_1:+1785428 | None:intergenic |
| TAAAGACAGGGAACGGATGA+TGG | 0.501441 | 2_1:+1785601 | None:intergenic |
| ATCAAAACTTCATCTCCAAA+TGG | 0.504677 | 2_1:-1785767 | Msa0187040:CDS |
| GTCCGTTGCGGCTACTAGCT+CGG | 0.508571 | 2_1:+1788534 | None:intergenic |
| GGTCTGATGCAGAAATCATC+AGG | 0.508813 | 2_1:-1788682 | Msa0187040:CDS |
| TAGCCTTTGATTCTTCCGGC+TGG | 0.510192 | 2_1:+1789145 | None:intergenic |
| AGAACAGTATCTTCATGGAT+AGG | 0.511164 | 2_1:+1786753 | None:intergenic |
| CAAGAACGCATTTGGTAGAA+AGG | 0.511592 | 2_1:-1786344 | Msa0187040:CDS |
| GAGTAGCAATGATGTAGAGC+TGG | 0.514316 | 2_1:+1787627 | None:intergenic |
| TTTGTTGAAGCATTCCTGAC+AGG | 0.514321 | 2_1:+1786776 | None:intergenic |
| TCCCCAGCCTATAGCTTACA+TGG | 0.518437 | 2_1:-1787500 | Msa0187040:CDS |
| AAATGAGAAAATGGATAATG+AGG | 0.521298 | 2_1:-1788458 | Msa0187040:intron |
| GGCTGAACCCCATTGTCGGA+TGG | 0.521823 | 2_1:+1787535 | None:intergenic |
| ATAAATTGTACTCAAATGAA+GGG | 0.524572 | 2_1:-1789101 | Msa0187040:CDS |
| CCCTGCTACAACAATGTACC+AGG | 0.525552 | 2_1:-1788630 | Msa0187040:CDS |
| GACGATCCCATTTCACAGTT+AGG | 0.526872 | 2_1:+1785728 | None:intergenic |
| GCTTCAGCGCGCCATAAAAG+AGG | 0.528280 | 2_1:-1786538 | Msa0187040:CDS |
| ATCGGATGATGCATATGCTC+AGG | 0.530983 | 2_1:-1788851 | Msa0187040:CDS |
| TGCGATCTTCCTTCGCACAC+TGG | 0.531010 | 2_1:+1787861 | None:intergenic |
| AAGATCATCCTGATTCTGCT+GGG | 0.531460 | 2_1:-1786102 | Msa0187040:CDS |
| AGGGTTGTAACAAAAGATCT+TGG | 0.531631 | 2_1:+1785929 | None:intergenic |
| GAATGCACTTGCTACCGTAA+AGG | 0.534952 | 2_1:-1787704 | Msa0187040:CDS |
| CCTGGTACATTGTTGTAGCA+GGG | 0.537895 | 2_1:+1788630 | None:intergenic |
| GAATTAAGACGCGAAAGCGT+AGG | 0.538425 | 2_1:+1789066 | None:intergenic |
| CGGATGATGGCTAACATACA+GGG | 0.541249 | 2_1:+1785614 | None:intergenic |
| GCTGAACCCCATTGTCGGAT+GGG | 0.544431 | 2_1:+1787536 | None:intergenic |
| AGTAGGCTGAACCCCATTGT+CGG | 0.545258 | 2_1:+1787531 | None:intergenic |
| TAGGAATCTAGATTCCTTGA+GGG | 0.545296 | 2_1:+1789287 | None:intergenic |
| TTAGGATGATGAGAAGAAGA+AGG | 0.545867 | 2_1:+1790430 | None:intergenic |
| AACGCATTTGGTAGAAAGGA+TGG | 0.546612 | 2_1:-1786340 | Msa0187040:intron |
| GCGCTGTCTTGACTTTGAGA+TGG | 0.547351 | 2_1:-1787884 | Msa0187040:CDS |
| AGCCATGTAAGCTATAGGCT+GGG | 0.550019 | 2_1:+1787498 | None:intergenic |
| GCCTCATGTCACCTCCCTCA+AGG | 0.551599 | 2_1:-1789301 | Msa0187040:CDS |
| TCGCAAAGATGCATGTTGCC+GGG | 0.554525 | 2_1:-1787742 | Msa0187040:CDS |
| AACGGACACTGACCGTGCAC+AGG | 0.555108 | 2_1:-1788518 | Msa0187040:CDS |
| AACTAGTCAGATCGATCGAA+AGG | 0.555727 | 2_1:-1788782 | Msa0187040:CDS |
| TAAGGGTGATGTGTGAGAGA+AGG | 0.557637 | 2_1:+1785653 | None:intergenic |
| GCCATGTAAGCTATAGGCTG+GGG | 0.557913 | 2_1:+1787499 | None:intergenic |
| GAATTGGACCCATCCGACAA+TGG | 0.560509 | 2_1:-1787544 | Msa0187040:CDS |
| AGCATATGCATCATCCGATA+CGG | 0.562944 | 2_1:+1788855 | None:intergenic |
| ATAATGTACTATTCAAGTAA+TGG | 0.563064 | 2_1:-1785484 | Msa0187040:three_prime_UTR |
| TCCATTAGCTGCAGATGTGA+AGG | 0.563119 | 2_1:-1786370 | Msa0187040:CDS |
| TGACTCTGTGCCTGAAACTG+GGG | 0.566690 | 2_1:-1786664 | Msa0187040:intron |
| GAGCCAGTCGGAGAAATTGA+GGG | 0.568531 | 2_1:-1787334 | Msa0187040:CDS |
| GGAAAACTTAAGATTAATCC+CGG | 0.568582 | 2_1:+1785449 | None:intergenic |
| TGAAAGTTCAGACTGTGATT+GGG | 0.569942 | 2_1:-1788758 | Msa0187040:CDS |
| GAAAATTGTAACCATTCTAA+GGG | 0.570259 | 2_1:+1785636 | None:intergenic |
| GTTGTAACAAAAGATCTTGG+TGG | 0.570269 | 2_1:+1785932 | None:intergenic |
| TCAAACCTGGAAAGCCGTAA+AGG | 0.570767 | 2_1:+1786070 | None:intergenic |
| TAACCAGCCGGAAGAATCAA+AGG | 0.570940 | 2_1:-1789148 | Msa0187040:CDS |
| CTCGAGTTTATTACCTGCGT+AGG | 0.579058 | 2_1:+1789268 | None:intergenic |
| TGAGGCGACGCGAAAACAGA+CGG | 0.581467 | 2_1:+1789318 | None:intergenic |
| TCCTTGAGGGAGGTGACATG+AGG | 0.583987 | 2_1:+1789300 | None:intergenic |
| AGACTGTGGTGTACTAGAGT+TGG | 0.586929 | 2_1:+1787822 | None:intergenic |
| AGAAACTAGTGACAAGGGTG+TGG | 0.586951 | 2_1:-1786164 | Msa0187040:CDS |
| TCACACACCGTGGCATTCGG+AGG | 0.587057 | 2_1:-1787906 | Msa0187040:CDS |
| GCTTTCGCGTCTTAATTCCA+GGG | 0.588910 | 2_1:-1789061 | Msa0187040:CDS |
| CAATTATACTGTAATGATTG+TGG | 0.589570 | 2_1:+1788949 | None:intergenic |
| ATTGTCTGGTGAAGCCGTAT+CGG | 0.592735 | 2_1:-1788869 | Msa0187040:CDS |
| AAGCATTCCTGACAGGAACA+AGG | 0.596059 | 2_1:+1786783 | None:intergenic |
| AACTAGTGACAAGGGTGTGG+AGG | 0.596480 | 2_1:-1786161 | Msa0187040:CDS |
| GACCTCGAACTTAGAGAGAG+TGG | 0.597735 | 2_1:+1790237 | None:intergenic |
| GAATTCATTATTTCAGACTG+TGG | 0.599589 | 2_1:+1787808 | None:intergenic |
| GCTGAGCAACTGATTTCAGT+AGG | 0.602495 | 2_1:-1789024 | Msa0187040:CDS |
| CTGGTACATTGTTGTAGCAG+GGG | 0.602762 | 2_1:+1788631 | None:intergenic |
| CCAAGAACATCAGCATCTCT+CGG | 0.603370 | 2_1:-1787596 | Msa0187040:CDS |
| ACATAACTAAAGACAGGGAA+CGG | 0.604316 | 2_1:+1785594 | None:intergenic |
| TTCAAGTGTAAACCGATACC+CGG | 0.605302 | 2_1:+1787724 | None:intergenic |
| TGATGATCAGAAGATTTACA+TGG | 0.605691 | 2_1:-1788605 | Msa0187040:CDS |
| TTGAGATGGCCAGTGTGCGA+AGG | 0.607118 | 2_1:-1787870 | Msa0187040:CDS |
| TAGCAAGATTGTCCTGTGCA+CGG | 0.611369 | 2_1:+1788506 | None:intergenic |
| CTTTAGGAGCAAATGCAAGA+GGG | 0.612218 | 2_1:+1786700 | None:intergenic |
| ACTAGTCAGATCGATCGAAA+GGG | 0.612598 | 2_1:-1788781 | Msa0187040:CDS |
| AGGAATCTAGATTCCTACGC+AGG | 0.613226 | 2_1:-1789281 | Msa0187040:intron |
| CAAATATCCAGAACCAGTGA+GGG | 0.617109 | 2_1:+1785910 | None:intergenic |
| TCGTCTCCTAGTCGCAGAGG+TGG | 0.618263 | 2_1:-1785710 | Msa0187040:CDS |
| TGGTACATTGTTGTAGCAGG+GGG | 0.619846 | 2_1:+1788632 | None:intergenic |
| ACTTTAGGAGCAAATGCAAG+AGG | 0.620252 | 2_1:+1786699 | None:intergenic |
| CCATTAGCTGCAGATGTGAA+GGG | 0.621617 | 2_1:-1786369 | Msa0187040:CDS |
| TTCCGAGCTAGTAGCCGCAA+CGG | 0.624512 | 2_1:-1788536 | Msa0187040:CDS |
| TAATGGTTATAATAATTACC+GGG | 0.624930 | 2_1:-1785467 | Msa0187040:three_prime_UTR |
| AGATCATCCTGATTCTGCTG+GGG | 0.627174 | 2_1:-1786101 | Msa0187040:CDS |
| CCAAATATCCAGAACCAGTG+AGG | 0.627791 | 2_1:+1785909 | None:intergenic |
| TTCCTGCCACCTCTGCGACT+AGG | 0.628203 | 2_1:+1785704 | None:intergenic |
| GGCTGGGGACAATCTTCAGT+AGG | 0.630869 | 2_1:+1787514 | None:intergenic |
| TAAATTGTACTCAAATGAAG+GGG | 0.630996 | 2_1:-1789100 | Msa0187040:CDS |
| TAGAAGATAATAAAATGTTG+TGG | 0.631141 | 2_1:+1790366 | None:intergenic |
| GTAGGAATCTAGATTCCTTG+AGG | 0.640124 | 2_1:+1789286 | None:intergenic |
| CAATCATTACAGTATAATTG+TGG | 0.641974 | 2_1:-1788946 | Msa0187040:CDS |
| AGAAACAGAAACTAGTGACA+AGG | 0.642503 | 2_1:-1786170 | Msa0187040:CDS |
| CAGGCACAGAGTCAGCACTT+CGG | 0.643193 | 2_1:+1786673 | None:intergenic |
| TGCACGGTCAGTGTCCGTTG+CGG | 0.648114 | 2_1:+1788522 | None:intergenic |
| AGTTCAGACTGTGATTGGGA+TGG | 0.649288 | 2_1:-1788754 | Msa0187040:CDS |
| GAAACAGAAACTAGTGACAA+GGG | 0.650767 | 2_1:-1786169 | Msa0187040:CDS |
| TGTGTGAGAGAAGGAAACGA+TGG | 0.651131 | 2_1:+1785662 | None:intergenic |
| GAATCTAGATTCCTTGAGGG+AGG | 0.652274 | 2_1:+1789290 | None:intergenic |
| TCCTACACTTTGTGGTGATG+AGG | 0.652902 | 2_1:-1788908 | Msa0187040:CDS |
| GATGATGCATATGCTCAGGA+AGG | 0.661427 | 2_1:-1788847 | Msa0187040:CDS |
| TCATATTCATTATTTCAGAG+AGG | 0.663890 | 2_1:+1790305 | None:intergenic |
| GACAGCGCCTCCGAATGCCA+CGG | 0.667054 | 2_1:+1787899 | None:intergenic |
| CAAAGTGTAGGATCATAACC+AGG | 0.669535 | 2_1:+1788919 | None:intergenic |
| CTTGTTTCTGTCACACACCG+TGG | 0.670686 | 2_1:-1787916 | Msa0187040:CDS |
| AGGCGTAAGTCAGAGCCAGT+CGG | 0.672763 | 2_1:-1787346 | Msa0187040:CDS |
| TCCTCATCACCACAAAGTGT+AGG | 0.678275 | 2_1:+1788907 | None:intergenic |
| GGATCGTCTCCTAGTCGCAG+AGG | 0.678306 | 2_1:-1785713 | Msa0187040:CDS |
| TTTAACTAGACATAACCAGC+CGG | 0.679166 | 2_1:-1789160 | Msa0187040:intron |
| TATGAATATCAATATCAACA+TGG | 0.695637 | 2_1:-1790287 | Msa0187040:CDS |
| TTGTGTGACAGATTCAGTCG+AGG | 0.697669 | 2_1:-1788824 | Msa0187040:CDS |
| ATTGGACCCATCCGACAATG+GGG | 0.707831 | 2_1:-1787542 | Msa0187040:CDS |
| GGCGACGCGAAAACAGACGG+AGG | 0.713947 | 2_1:+1789321 | None:intergenic |
| ATGCCAGAAATTCTCCGTGG+TGG | 0.726252 | 2_1:-1785812 | Msa0187040:CDS |
| TAGGAGAGCTATCACCACCA+CGG | 0.736061 | 2_1:+1785798 | None:intergenic |
| GCTACCGTAAAGGATCACAA+AGG | 0.764621 | 2_1:-1787694 | Msa0187040:CDS |
| TCAACATGGATACACCAGAG+AGG | 0.777370 | 2_1:-1790273 | Msa0187040:CDS |
| GAAATGCCAGAAATTCTCCG+TGG | 0.824692 | 2_1:-1785815 | Msa0187040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTATAGTTAAAAAAAAAA+AGG | + | chr2_1:1786575-1786594 | None:intergenic | 10.0% |
| !! | TATGCTTATATAATATAATA+GGG | + | chr2_1:1787613-1787632 | None:intergenic | 10.0% |
| !! | AATGAAAAATGAAAAATAGA+GGG | + | chr2_1:1785688-1785707 | None:intergenic | 15.0% |
| !! | AAATGAAAAATGAAAAATAG+AGG | + | chr2_1:1785689-1785708 | None:intergenic | 15.0% |
| !! | GTCTAGTTAAATAAATAAAT+TGG | + | chr2_1:1786642-1786661 | None:intergenic | 15.0% |
| !! | GTATGCTTATATAATATAAT+AGG | + | chr2_1:1787614-1787633 | None:intergenic | 15.0% |
| !! | ATAACTGAAAAAGAATAATA+TGG | + | chr2_1:1788972-1788991 | None:intergenic | 15.0% |
| !! | GTTATAATATGAATTACTTA+TGG | - | chr2_1:1789387-1789406 | Msa0187040:CDS | 15.0% |
| !! | TAGAAGATAATAAAATGTTG+TGG | + | chr2_1:1785448-1785467 | None:intergenic | 20.0% |
| !! | TATGAATATCAATATCAACA+TGG | - | chr2_1:1785524-1785543 | Msa0187040:three_prime_UTR | 20.0% |
| !! | AGAAAAATTGAAGAAGAAAA+GGG | + | chr2_1:1785639-1785658 | None:intergenic | 20.0% |
| !! | AAGAAAAATTGAAGAAGAAA+AGG | + | chr2_1:1785640-1785659 | None:intergenic | 20.0% |
| !!! | TTCTTCGTTTTAGAAATTTT+TGG | - | chr2_1:1785805-1785824 | Msa0187040:CDS | 20.0% |
| !! | GAAAAATTAAAAGATACCAA+AGG | + | chr2_1:1785958-1785977 | None:intergenic | 20.0% |
| !! | TATCCAAAATTAAAGGAAAA+GGG | + | chr2_1:1785982-1786001 | None:intergenic | 20.0% |
| !!! | AAATTGGTAATCATTAGAAA+TGG | + | chr2_1:1786626-1786645 | None:intergenic | 20.0% |
| !! | AATAAATTGTACTCAAATGA+AGG | - | chr2_1:1786709-1786728 | Msa0187040:CDS | 20.0% |
| !! | ATAAATTGTACTCAAATGAA+GGG | - | chr2_1:1786710-1786729 | Msa0187040:CDS | 20.0% |
| !! | ATTAACATATTAGCAGAATT+GGG | + | chr2_1:1787090-1787109 | None:intergenic | 20.0% |
| !! | AATTAACATATTAGCAGAAT+TGG | + | chr2_1:1787091-1787110 | None:intergenic | 20.0% |
| !!! | TATAAGCATACTTTTTGTTA+TGG | - | chr2_1:1787623-1787642 | Msa0187040:CDS | 20.0% |
| !! | ATAAAAAGAAATCAATGAGA+TGG | + | chr2_1:1788419-1788438 | None:intergenic | 20.0% |
| !! | TATTATACTTATACTAAGCT+TGG | - | chr2_1:1788436-1788455 | Msa0187040:intron | 20.0% |
| !!! | CATAACTTATTTAGTTTTCA+AGG | + | chr2_1:1788631-1788650 | None:intergenic | 20.0% |
| !! | GATCAATTAAACATAGAAAA+TGG | + | chr2_1:1788701-1788720 | None:intergenic | 20.0% |
| !!! | TGTTTAATTGATCCTTTTTA+CGG | - | chr2_1:1788708-1788727 | Msa0187040:CDS | 20.0% |
| !!! | TAAGACAAATTTAAAGCTAA+TGG | + | chr2_1:1789548-1789567 | None:intergenic | 20.0% |
| !! | ACAAAAATTGATAAAAGGAA+TGG | + | chr2_1:1789580-1789599 | None:intergenic | 20.0% |
| !! | TAAAAACATAACTAAAGACA+GGG | + | chr2_1:1790225-1790244 | None:intergenic | 20.0% |
| !! | ATTACTTGAATAGTACATTA+TGG | + | chr2_1:1790328-1790347 | None:intergenic | 20.0% |
| !! | ATAATGTACTATTCAAGTAA+TGG | - | chr2_1:1790327-1790346 | Msa0187040:five_prime_UTR | 20.0% |
| !! | GTAATGGTTATAATAATTAC+CGG | - | chr2_1:1790343-1790362 | Msa0187040:five_prime_UTR | 20.0% |
| !! | TAATGGTTATAATAATTACC+GGG | - | chr2_1:1790344-1790363 | Msa0187040:five_prime_UTR | 20.0% |
| !! | TTGTTTGTTTGTTACATTAG+AGG | + | chr2_1:1785414-1785433 | None:intergenic | 25.0% |
| ! | CATATTCATTATTTCAGAGA+GGG | + | chr2_1:1785508-1785527 | None:intergenic | 25.0% |
| ! | TCATATTCATTATTTCAGAG+AGG | + | chr2_1:1785509-1785528 | None:intergenic | 25.0% |
| ! | TAATGAAACACATGCAAAAA+CGG | + | chr2_1:1785663-1785682 | None:intergenic | 25.0% |
| ! | GAAGAAGCAATTAACATAAA+AGG | + | chr2_1:1785758-1785777 | None:intergenic | 25.0% |
| ! | ATCCAAAATTAAAGGAAAAG+GGG | + | chr2_1:1785981-1786000 | None:intergenic | 25.0% |
| ! | GTATCCAAAATTAAAGGAAA+AGG | + | chr2_1:1785983-1786002 | None:intergenic | 25.0% |
| ! | AACAGTGTATCCAAAATTAA+AGG | + | chr2_1:1785989-1786008 | None:intergenic | 25.0% |
| ! | ATTAACCCTCTAATTATATG+CGG | - | chr2_1:1786050-1786069 | Msa0187040:intron | 25.0% |
| !! | TACACTGCATTTTATTGTTT+TGG | - | chr2_1:1786097-1786116 | Msa0187040:CDS | 25.0% |
| !! | ACACTGCATTTTATTGTTTT+GGG | - | chr2_1:1786098-1786117 | Msa0187040:CDS | 25.0% |
| ! | AATTTATGTGTGTATATGTG+AGG | - | chr2_1:1786307-1786326 | Msa0187040:intron | 25.0% |
| ! | TTGTTGATATAGTTGAATAC+TGG | + | chr2_1:1786400-1786419 | None:intergenic | 25.0% |
| ! | TAAATTGTACTCAAATGAAG+GGG | - | chr2_1:1786711-1786730 | Msa0187040:CDS | 25.0% |
| ! | CAATTATACTGTAATGATTG+TGG | + | chr2_1:1786865-1786884 | None:intergenic | 25.0% |
| ! | CAATCATTACAGTATAATTG+TGG | - | chr2_1:1786865-1786884 | Msa0187040:intron | 25.0% |
| ! | AAATGAGAAAATGGATAATG+AGG | - | chr2_1:1787353-1787372 | Msa0187040:intron | 25.0% |
| !!! | TATGGCATTTTGTTTTCTTT+TGG | - | chr2_1:1787774-1787793 | Msa0187040:CDS | 25.0% |
| !!! | ATGGCATTTTGTTTTCTTTT+GGG | - | chr2_1:1787775-1787794 | Msa0187040:CDS | 25.0% |
| !! | CAAATTGAAAATTTGACTTC+TGG | - | chr2_1:1788144-1788163 | Msa0187040:intron | 25.0% |
| ! | AATATCATCTGAAAGAGAAT+TGG | - | chr2_1:1788251-1788270 | Msa0187040:intron | 25.0% |
| !! | TTCACTTACCTTTTCTTTTT+GGG | + | chr2_1:1788363-1788382 | None:intergenic | 25.0% |
| ! | ACGAAAAACAGATGAAAAAA+GGG | + | chr2_1:1788560-1788579 | None:intergenic | 25.0% |
| ! | AACGAAAAACAGATGAAAAA+AGG | + | chr2_1:1788561-1788580 | None:intergenic | 25.0% |
| !!! | TTTCATCTGTTTTTCGTTTT+TGG | - | chr2_1:1788563-1788582 | Msa0187040:CDS | 25.0% |
| !!! | TTCATCTGTTTTTCGTTTTT+GGG | - | chr2_1:1788564-1788583 | Msa0187040:CDS | 25.0% |
| ! | GTCATTTAAATTCTACAGAA+TGG | + | chr2_1:1788658-1788677 | None:intergenic | 25.0% |
| !! | GTTTAATTGATCCTTTTTAC+GGG | - | chr2_1:1788709-1788728 | Msa0187040:CDS | 25.0% |
| ! | AGGAAATTAATCAACTGATT+GGG | + | chr2_1:1788896-1788915 | None:intergenic | 25.0% |
| ! | AAGGAAATTAATCAACTGAT+TGG | + | chr2_1:1788897-1788916 | None:intergenic | 25.0% |
| ! | TCAGTTGATTAATTTCCTTA+AGG | - | chr2_1:1788898-1788917 | Msa0187040:CDS | 25.0% |
| ! | AGCATTCACAATATTTCTTT+AGG | + | chr2_1:1789323-1789342 | None:intergenic | 25.0% |
| ! | CATATTATAACTGAAACTTG+AGG | + | chr2_1:1789378-1789397 | None:intergenic | 25.0% |
| !! | TTATGGTAGTTTTCTTTTGA+AGG | - | chr2_1:1789404-1789423 | Msa0187040:CDS | 25.0% |
| !! | TATGGTAGTTTTCTTTTGAA+GGG | - | chr2_1:1789405-1789424 | Msa0187040:CDS | 25.0% |
| ! | CCTGTACAAAAATTGATAAA+AGG | + | chr2_1:1789585-1789604 | None:intergenic | 25.0% |
| !! | CCTTTTATCAATTTTTGTAC+AGG | - | chr2_1:1789582-1789601 | Msa0187040:intron | 25.0% |
| ! | AACTAAGATCAATCAATAAC+GGG | + | chr2_1:1789812-1789831 | None:intergenic | 25.0% |
| ! | GAACTAAGATCAATCAATAA+CGG | + | chr2_1:1789813-1789832 | None:intergenic | 25.0% |
| ! | GAAAATTGTAACCATTCTAA+GGG | + | chr2_1:1790178-1790197 | None:intergenic | 25.0% |
| ! | CTAAAAACATAACTAAAGAC+AGG | + | chr2_1:1790226-1790245 | None:intergenic | 25.0% |
| ! | AATTCCAACTAACTTAATCA+TGG | + | chr2_1:1790410-1790429 | None:intergenic | 25.0% |
| TTGAAGAAGAAAAGGGAAAA+GGG | + | chr2_1:1785632-1785651 | None:intergenic | 30.0% | |
| ATTGAAGAAGAAAAGGGAAA+AGG | + | chr2_1:1785633-1785652 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTTTGCGACTTCT+AGG | - | chr2_1:1785703-1785722 | Msa0187040:CDS | 30.0% |
| !!! | ACACTTCACATTTTTTCCTT+TGG | - | chr2_1:1785939-1785958 | Msa0187040:CDS | 30.0% |
| TCCAAAATTAAAGGAAAAGG+GGG | + | chr2_1:1785980-1785999 | None:intergenic | 30.0% | |
| CAAATCCGCATATAATTAGA+GGG | + | chr2_1:1786058-1786077 | None:intergenic | 30.0% | |
| TCAAATCCGCATATAATTAG+AGG | + | chr2_1:1786059-1786078 | None:intergenic | 30.0% | |
| !! | CACTGCATTTTATTGTTTTG+GGG | - | chr2_1:1786099-1786118 | Msa0187040:CDS | 30.0% |
| !! | AATTGATTTTGCTCTTGAGT+AGG | - | chr2_1:1786130-1786149 | Msa0187040:CDS | 30.0% |
| AATCCTGCATACATAACAAA+GGG | + | chr2_1:1786375-1786394 | None:intergenic | 30.0% | |
| ! | AATTGAAGCAGAAGCTTTTA+AGG | - | chr2_1:1787107-1787126 | Msa0187040:intron | 30.0% |
| ! | ATTGAAGCAGAAGCTTTTAA+GGG | - | chr2_1:1787108-1787127 | Msa0187040:intron | 30.0% |
| TGATGATCAGAAGATTTACA+TGG | - | chr2_1:1787206-1787225 | Msa0187040:intron | 30.0% | |
| ! | AAGATTTACATGGTTGATTC+AGG | - | chr2_1:1787216-1787235 | Msa0187040:intron | 30.0% |
| TGGCAATTCAAATGAGAAAA+TGG | - | chr2_1:1787344-1787363 | Msa0187040:CDS | 30.0% | |
| AGAAAATGGATAATGAGGTA+AGG | - | chr2_1:1787358-1787377 | Msa0187040:intron | 30.0% | |
| GTTCTGTTACAATCATTTCT+AGG | - | chr2_1:1787455-1787474 | Msa0187040:intron | 30.0% | |
| TCATGGAAAAACACAATTAC+AGG | + | chr2_1:1787495-1787514 | None:intergenic | 30.0% | |
| ! | CCAAACAGAAGCATAATTTA+GGG | + | chr2_1:1787736-1787755 | None:intergenic | 30.0% |
| ! | TCCAAACAGAAGCATAATTT+AGG | + | chr2_1:1787737-1787756 | None:intergenic | 30.0% |
| AAGTGTGTTGTAATGTTGTA+TGG | - | chr2_1:1787756-1787775 | Msa0187040:CDS | 30.0% | |
| !!! | TGGCATTTTGTTTTCTTTTG+GGG | - | chr2_1:1787776-1787795 | Msa0187040:CDS | 30.0% |
| GAATTCATTATTTCAGACTG+TGG | + | chr2_1:1788006-1788025 | None:intergenic | 30.0% | |
| ! | TCACTTACCTTTTCTTTTTG+GGG | + | chr2_1:1788362-1788381 | None:intergenic | 30.0% |
| ! | CTTCACTTACCTTTTCTTTT+TGG | + | chr2_1:1788364-1788383 | None:intergenic | 30.0% |
| TTTGAAGAACAGTATCTTCA+TGG | + | chr2_1:1789066-1789085 | None:intergenic | 30.0% | |
| GAAATATTGTGAATGCTATC+AGG | - | chr2_1:1789326-1789345 | Msa0187040:CDS | 30.0% | |
| AACTTGAGGTAAACATGATA+TGG | + | chr2_1:1789364-1789383 | None:intergenic | 30.0% | |
| AGCTGACAAACAAAACATTT+GGG | + | chr2_1:1789769-1789788 | None:intergenic | 30.0% | |
| TAGCTGACAAACAAAACATT+TGG | + | chr2_1:1789770-1789789 | None:intergenic | 30.0% | |
| ATCAAAACTTCATCTCCAAA+TGG | - | chr2_1:1790044-1790063 | Msa0187040:intron | 30.0% | |
| GGAAAATTGTAACCATTCTA+AGG | + | chr2_1:1790179-1790198 | None:intergenic | 30.0% | |
| ! | ACATTGAGTTTGTTTCAGTA+TGG | - | chr2_1:1790281-1790300 | Msa0187040:CDS | 30.0% |
| GGAAAACTTAAGATTAATCC+CGG | + | chr2_1:1790365-1790384 | None:intergenic | 30.0% | |
| ! | AAGTTTTCCTGTTGTGATTT+TGG | - | chr2_1:1790376-1790395 | Msa0187040:five_prime_UTR | 30.0% |
| TTAGGATGATGAGAAGAAGA+AGG | + | chr2_1:1785384-1785403 | None:intergenic | 35.0% | |
| TACATTAGAGGATGAGGATT+AGG | + | chr2_1:1785402-1785421 | None:intergenic | 35.0% | |
| ! | GTTTGTTACATTAGAGGATG+AGG | + | chr2_1:1785408-1785427 | None:intergenic | 35.0% |
| !! | TCCCCCTTTTCCTTTAATTT+TGG | - | chr2_1:1785976-1785995 | Msa0187040:intron | 35.0% |
| ! | ATACCCTTTGTTATGTATGC+AGG | - | chr2_1:1786369-1786388 | Msa0187040:CDS | 35.0% |
| GAATCCTGCATACATAACAA+AGG | + | chr2_1:1786376-1786395 | None:intergenic | 35.0% | |
| !! | GCAGATTTAACTGGCTTTAT+AGG | + | chr2_1:1786430-1786449 | None:intergenic | 35.0% |
| GTAATGTGAGCAGATTTAAC+TGG | + | chr2_1:1786439-1786458 | None:intergenic | 35.0% | |
| TAGGAATCTAGATTCCTTGA+GGG | + | chr2_1:1786527-1786546 | None:intergenic | 35.0% | |
| TTTAACTAGACATAACCAGC+CGG | - | chr2_1:1786651-1786670 | Msa0187040:intron | 35.0% | |
| ! | TCTTTAGCCTTTGATTCTTC+CGG | + | chr2_1:1786673-1786692 | None:intergenic | 35.0% |
| ! | TGATGAGGATAACACACTTT+TGG | - | chr2_1:1786918-1786937 | Msa0187040:intron | 35.0% |
| !!! | AACACACTTTTGGAATTGTC+TGG | - | chr2_1:1786928-1786947 | Msa0187040:intron | 35.0% |
| TGAAAGTTCAGACTGTGATT+GGG | - | chr2_1:1787053-1787072 | Msa0187040:intron | 35.0% | |
| AATCTTCTGATCATCATTCC+TGG | + | chr2_1:1787202-1787221 | None:intergenic | 35.0% | |
| ATGTAGTTGTATGTTTCCCT+GGG | - | chr2_1:1787424-1787443 | Msa0187040:intron | 35.0% | |
| ! | ACTGTGATTTGTAGTCAATC+AGG | - | chr2_1:1787690-1787709 | Msa0187040:CDS | 35.0% |
| ! | CTGTGATTTGTAGTCAATCA+GGG | - | chr2_1:1787691-1787710 | Msa0187040:CDS | 35.0% |
| CCCTAAATTATGCTTCTGTT+TGG | - | chr2_1:1787733-1787752 | Msa0187040:CDS | 35.0% | |
| ! | AATTTGCGTTACGTTTTGCA+GGG | + | chr2_1:1788050-1788069 | None:intergenic | 35.0% |
| TTTGCCTTTGTGATCCTTTA+CGG | + | chr2_1:1788124-1788143 | None:intergenic | 35.0% | |
| !! | GGAATTTTCAAGCATAAAGC+AGG | + | chr2_1:1788398-1788417 | None:intergenic | 35.0% |
| TATACTAAGCTTGGATATGC+AGG | - | chr2_1:1788445-1788464 | Msa0187040:intron | 35.0% | |
| ATAATATGCAGCCCGTAAAA+AGG | + | chr2_1:1788723-1788742 | None:intergenic | 35.0% | |
| GCTAGGACAAGAAAAACTAA+TGG | + | chr2_1:1788755-1788774 | None:intergenic | 35.0% | |
| AACCTGGCTGAAAAAAACTT+TGG | + | chr2_1:1788844-1788863 | None:intergenic | 35.0% | |
| !!! | TTTCAGCCAGGTTTTTTTAC+CGG | - | chr2_1:1788851-1788870 | Msa0187040:CDS | 35.0% |
| CAATGCTGCATATAACCTTA+AGG | + | chr2_1:1788916-1788935 | None:intergenic | 35.0% | |
| GGTTAATTTCAGTACCAGTA+TGG | + | chr2_1:1788951-1788970 | None:intergenic | 35.0% | |
| AGAACAGTATCTTCATGGAT+AGG | + | chr2_1:1789061-1789080 | None:intergenic | 35.0% | |
| GAGGTAAACATGATATGGTA+AGG | + | chr2_1:1789359-1789378 | None:intergenic | 35.0% | |
| AGAAACAGAAACTAGTGACA+AGG | - | chr2_1:1789641-1789660 | Msa0187040:intron | 35.0% | |
| GAAACAGAAACTAGTGACAA+GGG | - | chr2_1:1789642-1789661 | Msa0187040:intron | 35.0% | |
| AAACATTTGGGTATCAAACC+TGG | + | chr2_1:1789757-1789776 | None:intergenic | 35.0% | |
| ! | TTGATCTTAGTTCTTGCAAC+AGG | - | chr2_1:1789820-1789839 | Msa0187040:intron | 35.0% |
| GTTGTAACAAAAGATCTTGG+TGG | + | chr2_1:1789882-1789901 | None:intergenic | 35.0% | |
| AGGGTTGTAACAAAAGATCT+TGG | + | chr2_1:1789885-1789904 | None:intergenic | 35.0% | |
| TTGCGAAACCAAATTCTCTT+TGG | - | chr2_1:1789937-1789956 | Msa0187040:intron | 35.0% | |
| GATTGAGACCAAAGAGAATT+TGG | + | chr2_1:1789948-1789967 | None:intergenic | 35.0% | |
| !! | ATTTCTGGCATTTCATCATC+TGG | + | chr2_1:1789990-1790009 | None:intergenic | 35.0% |
| !! | GAAGTTTTGATGCATGCAAT+AGG | + | chr2_1:1790035-1790054 | None:intergenic | 35.0% |
| ACATAACTAAAGACAGGGAA+CGG | + | chr2_1:1790220-1790239 | None:intergenic | 35.0% | |
| GAAATGTCCAAAATCACAAC+AGG | + | chr2_1:1790386-1790405 | None:intergenic | 35.0% | |
| TTCGCCATGATTAAGTTAGT+TGG | - | chr2_1:1790403-1790422 | Msa0187040:five_prime_UTR | 35.0% | |
| AGAAGAAAAGGGAAAAGGGA+GGG | + | chr2_1:1785628-1785647 | None:intergenic | 40.0% | |
| AAGAAGAAAAGGGAAAAGGG+AGG | + | chr2_1:1785629-1785648 | None:intergenic | 40.0% | |
| AGATCTAGAAGAGTGAGGTA+TGG | + | chr2_1:1785849-1785868 | None:intergenic | 40.0% | |
| TGCATGATTACAGAGAGAAG+AGG | + | chr2_1:1786169-1786188 | None:intergenic | 40.0% | |
| GTAGGAATCTAGATTCCTTG+AGG | + | chr2_1:1786528-1786547 | None:intergenic | 40.0% | |
| CAGTATAATTGTGGTAGTCC+TGG | - | chr2_1:1786874-1786893 | Msa0187040:intron | 40.0% | |
| CAAAGTGTAGGATCATAACC+AGG | + | chr2_1:1786895-1786914 | None:intergenic | 40.0% | |
| GGTTATGATCCTACACTTTG+TGG | - | chr2_1:1786895-1786914 | Msa0187040:intron | 40.0% | |
| AGCATATGCATCATCCGATA+CGG | + | chr2_1:1786959-1786978 | None:intergenic | 40.0% | |
| AACTAGTCAGATCGATCGAA+AGG | - | chr2_1:1787029-1787048 | Msa0187040:intron | 40.0% | |
| ACTAGTCAGATCGATCGAAA+GGG | - | chr2_1:1787030-1787049 | Msa0187040:intron | 40.0% | |
| GTGAAAGTTCAGACTGTGAT+TGG | - | chr2_1:1787052-1787071 | Msa0187040:intron | 40.0% | |
| ACAAAATCGCTGAGTCGTAT+AGG | + | chr2_1:1787159-1787178 | None:intergenic | 40.0% | |
| CATGTAGTTGTATGTTTCCC+TGG | - | chr2_1:1787423-1787442 | Msa0187040:intron | 40.0% | |
| AACAGAACTCTCTAAACCCA+GGG | + | chr2_1:1787443-1787462 | None:intergenic | 40.0% | |
| TAACAGAACTCTCTAAACCC+AGG | + | chr2_1:1787444-1787463 | None:intergenic | 40.0% | |
| TTTCCATGAGTTTATCCCAC+AGG | - | chr2_1:1787506-1787525 | Msa0187040:CDS | 40.0% | |
| TAGGCAATGAGTATGAGTAC+AGG | - | chr2_1:1787538-1787557 | Msa0187040:CDS | 40.0% | |
| ! | GAATTTGCGTTACGTTTTGC+AGG | + | chr2_1:1788051-1788070 | None:intergenic | 40.0% |
| TTCAAGTGTAAACCGATACC+CGG | + | chr2_1:1788090-1788109 | None:intergenic | 40.0% | |
| TCAGTAGCCATGTAAGCTAT+AGG | + | chr2_1:1788321-1788340 | None:intergenic | 40.0% | |
| AGAACAGCCCCAAAAAGAAA+AGG | - | chr2_1:1788352-1788371 | Msa0187040:intron | 40.0% | |
| ! | AGAGTACAAGACTGGTTGAA+GGG | + | chr2_1:1788597-1788616 | None:intergenic | 40.0% |
| ! | GATACAAGAGAGTACAAGAC+TGG | + | chr2_1:1788605-1788624 | None:intergenic | 40.0% |
| !! | TTTTTCTTGTCCTAGCCTTC+CGG | - | chr2_1:1788759-1788778 | Msa0187040:CDS | 40.0% |
| GGACCTAGTAATCCAAACTT+TGG | - | chr2_1:1788796-1788815 | Msa0187040:CDS | 40.0% | |
| TGGCCAAAGTTTGGATTACT+AGG | + | chr2_1:1788802-1788821 | None:intergenic | 40.0% | |
| TGAACTCCGGTAAAAAAACC+TGG | + | chr2_1:1788860-1788879 | None:intergenic | 40.0% | |
| CTCAAGTGGTTAATGAACTC+CGG | + | chr2_1:1788873-1788892 | None:intergenic | 40.0% | |
| TGACTTGAAGATGACCATAC+TGG | - | chr2_1:1788934-1788953 | Msa0187040:CDS | 40.0% | |
| ! | TATTGTGAGTGTTTTGCTGC+TGG | - | chr2_1:1788989-1789008 | Msa0187040:CDS | 40.0% |
| ! | TTTGTTGAAGCATTCCTGAC+AGG | + | chr2_1:1789038-1789057 | None:intergenic | 40.0% |
| ! | CTTTAGGAGCAAATGCAAGA+GGG | + | chr2_1:1789114-1789133 | None:intergenic | 40.0% |
| ! | ACTTTAGGAGCAAATGCAAG+AGG | + | chr2_1:1789115-1789134 | None:intergenic | 40.0% |
| TATCTTCTAACCCCAGTTTC+AGG | + | chr2_1:1789160-1789179 | None:intergenic | 40.0% | |
| !!! | CTGAAGCTGGAGTTTTGTTT+GGG | + | chr2_1:1789260-1789279 | None:intergenic | 40.0% |
| ! | TGCAGTTGCATCCTCTTTTA+TGG | + | chr2_1:1789287-1789306 | None:intergenic | 40.0% |
| !! | GGTAGTTTTCTTTTGAAGGG+TGG | - | chr2_1:1789408-1789427 | Msa0187040:CDS | 40.0% |
| !! | TTTCTTTTGAAGGGTGGTGT+TGG | - | chr2_1:1789414-1789433 | Msa0187040:CDS | 40.0% |
| CAAGAACGCATTTGGTAGAA+AGG | - | chr2_1:1789467-1789486 | Msa0187040:intron | 40.0% | |
| AACGCATTTGGTAGAAAGGA+TGG | - | chr2_1:1789471-1789490 | Msa0187040:intron | 40.0% | |
| TACCATGGTCTGCAATGTAA+GGG | + | chr2_1:1789505-1789524 | None:intergenic | 40.0% | |
| TTAAAGCTAATGGCCCTGAT+TGG | + | chr2_1:1789538-1789557 | None:intergenic | 40.0% | |
| TGTACAGGTTCTGCTTCTAT+AGG | - | chr2_1:1789597-1789616 | Msa0187040:intron | 40.0% | |
| GTACAGGTTCTGCTTCTATA+GGG | - | chr2_1:1789598-1789617 | Msa0187040:intron | 40.0% | |
| TCTGCTTCTATAGGGATAGA+AGG | - | chr2_1:1789606-1789625 | Msa0187040:intron | 40.0% | |
| AAGATCATCCTGATTCTGCT+GGG | - | chr2_1:1789709-1789728 | Msa0187040:intron | 40.0% | |
| TGGCTTTCCCTTTGATGAAA+AGG | + | chr2_1:1789862-1789881 | None:intergenic | 40.0% | |
| ! | TCTTTTGTTACAACCCTCAC+TGG | - | chr2_1:1789888-1789907 | Msa0187040:intron | 40.0% |
| CAAATATCCAGAACCAGTGA+GGG | + | chr2_1:1789904-1789923 | None:intergenic | 40.0% | |
| CTTCATCTCCAAATGGCAAA+AGG | - | chr2_1:1790051-1790070 | Msa0187040:intron | 40.0% | |
| ! | GAAGAGATCCTTTTGCCATT+TGG | + | chr2_1:1790062-1790081 | None:intergenic | 40.0% |
| TCTTCGCCTAACTGTGAAAT+GGG | - | chr2_1:1790077-1790096 | Msa0187040:intron | 40.0% | |
| TCAACATGGATACACCAGAG+AGG | - | chr2_1:1785538-1785557 | Msa0187040:three_prime_UTR | 45.0% | |
| !! | TAGAGAGAGTGGTGTTGATC+TGG | + | chr2_1:1785566-1785585 | None:intergenic | 45.0% |
| AGCAGAGATCTAGAAGAGTG+AGG | + | chr2_1:1785854-1785873 | None:intergenic | 45.0% | |
| GAATCTAGATTCCTTGAGGG+AGG | + | chr2_1:1786524-1786543 | None:intergenic | 45.0% | |
| AGGAATCTAGATTCCTACGC+AGG | - | chr2_1:1786530-1786549 | Msa0187040:CDS | 45.0% | |
| CTCGAGTTTATTACCTGCGT+AGG | + | chr2_1:1786546-1786565 | None:intergenic | 45.0% | |
| TAACCAGCCGGAAGAATCAA+AGG | - | chr2_1:1786663-1786682 | Msa0187040:intron | 45.0% | |
| ! | GAATTAAGACGCGAAAGCGT+AGG | + | chr2_1:1786748-1786767 | None:intergenic | 45.0% |
| GCTTTCGCGTCTTAATTCCA+GGG | - | chr2_1:1786750-1786769 | Msa0187040:CDS | 45.0% | |
| AGCACTTTCATGCAATTCCC+TGG | + | chr2_1:1786770-1786789 | None:intergenic | 45.0% | |
| ! | GCTGAGCAACTGATTTCAGT+AGG | - | chr2_1:1786787-1786806 | Msa0187040:CDS | 45.0% |
| ! | TCCTACACTTTGTGGTGATG+AGG | - | chr2_1:1786903-1786922 | Msa0187040:intron | 45.0% |
| TCCTCATCACCACAAAGTGT+AGG | + | chr2_1:1786907-1786926 | None:intergenic | 45.0% | |
| ATTGTCTGGTGAAGCCGTAT+CGG | - | chr2_1:1786942-1786961 | Msa0187040:intron | 45.0% | |
| ATCGGATGATGCATATGCTC+AGG | - | chr2_1:1786960-1786979 | Msa0187040:intron | 45.0% | |
| GATGATGCATATGCTCAGGA+AGG | - | chr2_1:1786964-1786983 | Msa0187040:intron | 45.0% | |
| TTGTGTGACAGATTCAGTCG+AGG | - | chr2_1:1786987-1787006 | Msa0187040:intron | 45.0% | |
| GAGGCTGAATTGCATCTTCA+AGG | - | chr2_1:1787006-1787025 | Msa0187040:intron | 45.0% | |
| AGTTCAGACTGTGATTGGGA+TGG | - | chr2_1:1787057-1787076 | Msa0187040:intron | 45.0% | |
| GGTCTGATGCAGAAATCATC+AGG | - | chr2_1:1787129-1787148 | Msa0187040:intron | 45.0% | |
| TGGTACATTGTTGTAGCAGG+GGG | + | chr2_1:1787182-1787201 | None:intergenic | 45.0% | |
| CTGGTACATTGTTGTAGCAG+GGG | + | chr2_1:1787183-1787202 | None:intergenic | 45.0% | |
| CCTGGTACATTGTTGTAGCA+GGG | + | chr2_1:1787184-1787203 | None:intergenic | 45.0% | |
| TCCTGGTACATTGTTGTAGC+AGG | + | chr2_1:1787185-1787204 | None:intergenic | 45.0% | |
| TAGCAAGATTGTCCTGTGCA+CGG | + | chr2_1:1787308-1787327 | None:intergenic | 45.0% | |
| GCACAGGACAATCTTGCTAA+TGG | - | chr2_1:1787309-1787328 | Msa0187040:CDS | 45.0% | |
| GCTAATGGTTCTTCGATGAC+TGG | - | chr2_1:1787324-1787343 | Msa0187040:CDS | 45.0% | |
| ATGCCTGTGGGATAAACTCA+TGG | + | chr2_1:1787512-1787531 | None:intergenic | 45.0% | |
| ATCCCACAGGCATGATTTCT+AGG | - | chr2_1:1787519-1787538 | Msa0187040:CDS | 45.0% | |
| TGCCTAGAAATCATGCCTGT+GGG | + | chr2_1:1787524-1787543 | None:intergenic | 45.0% | |
| TTGCCTAGAAATCATGCCTG+TGG | + | chr2_1:1787525-1787544 | None:intergenic | 45.0% | |
| AGACTGTGGTGTACTAGAGT+TGG | + | chr2_1:1787992-1788011 | None:intergenic | 45.0% | |
| ! | TACGTTTTGCAGGGAGCAAT+TGG | + | chr2_1:1788041-1788060 | None:intergenic | 45.0% |
| TTCGCAAAGATGCATGTTGC+CGG | - | chr2_1:1788068-1788087 | Msa0187040:intron | 45.0% | |
| ! | GAATGCACTTGCTACCGTAA+AGG | - | chr2_1:1788107-1788126 | Msa0187040:intron | 45.0% |
| GCTACCGTAAAGGATCACAA+AGG | - | chr2_1:1788117-1788136 | Msa0187040:intron | 45.0% | |
| GAGTAGCAATGATGTAGAGC+TGG | + | chr2_1:1788187-1788206 | None:intergenic | 45.0% | |
| CCAAGAACATCAGCATCTCT+CGG | - | chr2_1:1788215-1788234 | Msa0187040:intron | 45.0% | |
| AATTGGACCCATCCGACAAT+GGG | - | chr2_1:1788268-1788287 | Msa0187040:intron | 45.0% | |
| AGCCATGTAAGCTATAGGCT+GGG | + | chr2_1:1788316-1788335 | None:intergenic | 45.0% | |
| TAGCCATGTAAGCTATAGGC+TGG | + | chr2_1:1788317-1788336 | None:intergenic | 45.0% | |
| ! | GAGAGTACAAGACTGGTTGA+AGG | + | chr2_1:1788598-1788617 | None:intergenic | 45.0% |
| ! | GAAAATGGTCGCAAAGTGCT+TGG | + | chr2_1:1788686-1788705 | None:intergenic | 45.0% |
| CTTGTCTCTTGGCCAAAGTT+TGG | + | chr2_1:1788811-1788830 | None:intergenic | 45.0% | |
| GCCAAGAGACAAGTAAACTC+TGG | - | chr2_1:1788818-1788837 | Msa0187040:CDS | 45.0% | |
| GCCAGAGTTTACTTGTCTCT+TGG | + | chr2_1:1788822-1788841 | None:intergenic | 45.0% | |
| !!! | GGCCAAAGTTTTTTTCAGCC+AGG | - | chr2_1:1788839-1788858 | Msa0187040:CDS | 45.0% |
| ATCAACTGATTGGGCTCAAG+TGG | + | chr2_1:1788887-1788906 | None:intergenic | 45.0% | |
| CATAGAACCTTGTTCCTGTC+AGG | - | chr2_1:1789021-1789040 | Msa0187040:CDS | 45.0% | |
| AAGCATTCCTGACAGGAACA+AGG | + | chr2_1:1789031-1789050 | None:intergenic | 45.0% | |
| TCAGCACTTCGGATGACTTT+AGG | + | chr2_1:1789130-1789149 | None:intergenic | 45.0% | |
| !!! | GCTGAAGCTGGAGTTTTGTT+TGG | + | chr2_1:1789261-1789280 | None:intergenic | 45.0% |
| TCCATTAGCTGCAGATGTGA+AGG | - | chr2_1:1789441-1789460 | Msa0187040:intron | 45.0% | |
| CCATTAGCTGCAGATGTGAA+GGG | - | chr2_1:1789442-1789461 | Msa0187040:intron | 45.0% | |
| TTCCCTTACATTGCAGACCA+TGG | - | chr2_1:1789500-1789519 | Msa0187040:intron | 45.0% | |
| CTACCATGGTCTGCAATGTA+AGG | + | chr2_1:1789506-1789525 | None:intergenic | 45.0% | |
| AGAAACTAGTGACAAGGGTG+TGG | - | chr2_1:1789647-1789666 | Msa0187040:intron | 45.0% | |
| GAAGATCATCCTGATTCTGC+TGG | - | chr2_1:1789708-1789727 | Msa0187040:intron | 45.0% | |
| AGATCATCCTGATTCTGCTG+GGG | - | chr2_1:1789710-1789729 | Msa0187040:intron | 45.0% | |
| TCAAACCTGGAAAGCCGTAA+AGG | + | chr2_1:1789744-1789763 | None:intergenic | 45.0% | |
| CCAAATATCCAGAACCAGTG+AGG | + | chr2_1:1789905-1789924 | None:intergenic | 45.0% | |
| !! | CCTCACTGGTTCTGGATATT+TGG | - | chr2_1:1789902-1789921 | Msa0187040:intron | 45.0% |
| ! | TGGTTTCGCAAGCTTTTGAC+TGG | + | chr2_1:1789928-1789947 | None:intergenic | 45.0% |
| GAAATGCCAGAAATTCTCCG+TGG | - | chr2_1:1789996-1790015 | Msa0187040:intron | 45.0% | |
| CTCTTCGCCTAACTGTGAAA+TGG | - | chr2_1:1790076-1790095 | Msa0187040:intron | 45.0% | |
| GACGATCCCATTTCACAGTT+AGG | + | chr2_1:1790086-1790105 | None:intergenic | 45.0% | |
| TGTGTGAGAGAAGGAAACGA+TGG | + | chr2_1:1790152-1790171 | None:intergenic | 45.0% | |
| TAAGGGTGATGTGTGAGAGA+AGG | + | chr2_1:1790161-1790180 | None:intergenic | 45.0% | |
| CTCACACATCACCCTTAGAA+TGG | - | chr2_1:1790164-1790183 | Msa0187040:intron | 45.0% | |
| ! | CGGATGATGGCTAACATACA+GGG | + | chr2_1:1790200-1790219 | None:intergenic | 45.0% |
| ! | ACGGATGATGGCTAACATAC+AGG | + | chr2_1:1790201-1790220 | None:intergenic | 45.0% |
| TAAAGACAGGGAACGGATGA+TGG | + | chr2_1:1790213-1790232 | None:intergenic | 45.0% | |
| !! | AATATAAGTATAATTAAATT+GGG | + | chr2_1:1786349-1786368 | None:intergenic | 5.0% |
| !! | TAATATAAGTATAATTAAAT+TGG | + | chr2_1:1786350-1786369 | None:intergenic | 5.0% |
| ! | GTGTTGATCTGGTTCCTCTC+TGG | + | chr2_1:1785555-1785574 | None:intergenic | 50.0% |
| CACCACTCTCTCTAAGTTCG+AGG | - | chr2_1:1785572-1785591 | Msa0187040:three_prime_UTR | 50.0% | |
| GACCTCGAACTTAGAGAGAG+TGG | + | chr2_1:1785577-1785596 | None:intergenic | 50.0% | |
| TAGCCTTTGATTCTTCCGGC+TGG | + | chr2_1:1786669-1786688 | None:intergenic | 50.0% | |
| CGCTTTCGCGTCTTAATTCC+AGG | - | chr2_1:1786749-1786768 | Msa0187040:CDS | 50.0% | |
| CCCTGCTACAACAATGTACC+AGG | - | chr2_1:1787181-1787200 | Msa0187040:intron | 50.0% | |
| !! | CTTGTTTCTGTCACACACCG+TGG | - | chr2_1:1787895-1787914 | Msa0187040:CDS | 50.0% |
| ! | GCGCTGTCTTGACTTTGAGA+TGG | - | chr2_1:1787927-1787946 | Msa0187040:intron | 50.0% |
| TCGCAAAGATGCATGTTGCC+GGG | - | chr2_1:1788069-1788088 | Msa0187040:intron | 50.0% | |
| AGATGCATGTTGCCGGGTAT+CGG | - | chr2_1:1788075-1788094 | Msa0187040:intron | 50.0% | |
| GCAATGATGTAGAGCTGGTC+AGG | + | chr2_1:1788182-1788201 | None:intergenic | 50.0% | |
| CCGAGAGATGCTGATGTTCT+TGG | + | chr2_1:1788218-1788237 | None:intergenic | 50.0% | |
| GAATTGGACCCATCCGACAA+TGG | - | chr2_1:1788267-1788286 | Msa0187040:intron | 50.0% | |
| ATTGGACCCATCCGACAATG+GGG | - | chr2_1:1788269-1788288 | Msa0187040:intron | 50.0% | |
| AGTAGGCTGAACCCCATTGT+CGG | + | chr2_1:1788283-1788302 | None:intergenic | 50.0% | |
| TCCCCAGCCTATAGCTTACA+TGG | - | chr2_1:1788311-1788330 | Msa0187040:intron | 50.0% | |
| GCCATGTAAGCTATAGGCTG+GGG | + | chr2_1:1788315-1788334 | None:intergenic | 50.0% | |
| AGAGCCAGTCGGAGAAATTG+AGG | - | chr2_1:1788476-1788495 | Msa0187040:CDS | 50.0% | |
| GAGCCAGTCGGAGAAATTGA+GGG | - | chr2_1:1788477-1788496 | Msa0187040:CDS | 50.0% | |
| CATCCCTCAATTTCTCCGAC+TGG | + | chr2_1:1788483-1788502 | None:intergenic | 50.0% | |
| CCTTCCGGTTCTCAAAGGAA+GGG | - | chr2_1:1788774-1788793 | Msa0187040:CDS | 50.0% | |
| CTTCCGGTTCTCAAAGGAAG+GGG | - | chr2_1:1788775-1788794 | Msa0187040:CDS | 50.0% | |
| CTGACTCTGTGCCTGAAACT+GGG | - | chr2_1:1789146-1789165 | Msa0187040:CDS | 50.0% | |
| TGACTCTGTGCCTGAAACTG+GGG | - | chr2_1:1789147-1789166 | Msa0187040:CDS | 50.0% | |
| CCCTTCACATCTGCAGCTAA+TGG | + | chr2_1:1789445-1789464 | None:intergenic | 50.0% | |
| ! | GAAGGGTGCAAGAACGCATT+TGG | - | chr2_1:1789459-1789478 | Msa0187040:intron | 50.0% |
| CATTGCAGACCATGGTAGCT+TGG | - | chr2_1:1789508-1789527 | Msa0187040:intron | 50.0% | |
| ATTGGCGTTCCAAGCTACCA+TGG | + | chr2_1:1789520-1789539 | None:intergenic | 50.0% | |
| GTAGCTTGGAACGCCAATCA+GGG | - | chr2_1:1789522-1789541 | Msa0187040:intron | 50.0% | |
| ! | AACTAGTGACAAGGGTGTGG+AGG | - | chr2_1:1789650-1789669 | Msa0187040:intron | 50.0% |
| CTGGGGTCTCAACACCTTTA+CGG | - | chr2_1:1789727-1789746 | Msa0187040:intron | 50.0% | |
| CAACACCTTTACGGCTTTCC+AGG | - | chr2_1:1789736-1789755 | Msa0187040:intron | 50.0% | |
| !! | GTTACAACCCTCACTGGTTC+TGG | - | chr2_1:1789894-1789913 | Msa0187040:intron | 50.0% |
| ATGCCAGAAATTCTCCGTGG+TGG | - | chr2_1:1789999-1790018 | Msa0187040:intron | 50.0% | |
| TCACCACCACGGAGAATTTC+TGG | + | chr2_1:1790005-1790024 | None:intergenic | 50.0% | |
| TAGGAGAGCTATCACCACCA+CGG | + | chr2_1:1790016-1790035 | None:intergenic | 50.0% | |
| TGAGGCGACGCGAAAACAGA+CGG | + | chr2_1:1786496-1786515 | None:intergenic | 55.0% | |
| TCCTTGAGGGAGGTGACATG+AGG | + | chr2_1:1786514-1786533 | None:intergenic | 55.0% | |
| TTCCGAGCTAGTAGCCGCAA+CGG | - | chr2_1:1787275-1787294 | Msa0187040:intron | 55.0% | |
| CTGTCACACACCGTGGCATT+CGG | - | chr2_1:1787902-1787921 | Msa0187040:CDS | 55.0% | |
| TTGAGATGGCCAGTGTGCGA+AGG | - | chr2_1:1787941-1787960 | Msa0187040:intron | 55.0% | |
| TGCGATCTTCCTTCGCACAC+TGG | + | chr2_1:1787953-1787972 | None:intergenic | 55.0% | |
| GCTGAACCCCATTGTCGGAT+GGG | + | chr2_1:1788278-1788297 | None:intergenic | 55.0% | |
| GGCTGGGGACAATCTTCAGT+AGG | + | chr2_1:1788300-1788319 | None:intergenic | 55.0% | |
| AGGCGTAAGTCAGAGCCAGT+CGG | - | chr2_1:1788465-1788484 | Msa0187040:CDS | 55.0% | |
| ! | CCTTTGAGAACCGGAAGGCT+AGG | + | chr2_1:1788772-1788791 | None:intergenic | 55.0% |
| ! | CCTAGCCTTCCGGTTCTCAA+AGG | - | chr2_1:1788769-1788788 | Msa0187040:CDS | 55.0% |
| GCCTTCCGGTTCTCAAAGGA+AGG | - | chr2_1:1788773-1788792 | Msa0187040:CDS | 55.0% | |
| ! | CCCTTCCTTTGAGAACCGGA+AGG | + | chr2_1:1788777-1788796 | None:intergenic | 55.0% |
| ! | GGTCCCCTTCCTTTGAGAAC+CGG | + | chr2_1:1788781-1788800 | None:intergenic | 55.0% |
| CAGGCACAGAGTCAGCACTT+CGG | + | chr2_1:1789141-1789160 | None:intergenic | 55.0% | |
| ! | GCTGACTCTGTGCCTGAAAC+TGG | - | chr2_1:1789145-1789164 | Msa0187040:CDS | 55.0% |
| ! | CTTTTATGGCGCGCTGAAGC+TGG | + | chr2_1:1789273-1789292 | None:intergenic | 55.0% |
| GCTTCAGCGCGCCATAAAAG+AGG | - | chr2_1:1789273-1789292 | Msa0187040:intron | 55.0% | |
| GGTAGCTTGGAACGCCAATC+AGG | - | chr2_1:1789521-1789540 | Msa0187040:intron | 55.0% | |
| GTTGAGACCCCAGCAGAATC+AGG | + | chr2_1:1789720-1789739 | None:intergenic | 55.0% | |
| GCCTCATGTCACCTCCCTCA+AGG | - | chr2_1:1786510-1786529 | Msa0187040:CDS | 60.0% | |
| GTCCGTTGCGGCTACTAGCT+CGG | + | chr2_1:1787280-1787299 | None:intergenic | 60.0% | |
| TGCACGGTCAGTGTCCGTTG+CGG | + | chr2_1:1787292-1787311 | None:intergenic | 60.0% | |
| AACGGACACTGACCGTGCAC+AGG | - | chr2_1:1787293-1787312 | Msa0187040:CDS | 60.0% | |
| TCACACACCGTGGCATTCGG+AGG | - | chr2_1:1787905-1787924 | Msa0187040:CDS | 60.0% | |
| GGCTGAACCCCATTGTCGGA+TGG | + | chr2_1:1788279-1788298 | None:intergenic | 60.0% | |
| GGATCGTCTCCTAGTCGCAG+AGG | - | chr2_1:1790098-1790117 | Msa0187040:intron | 60.0% | |
| TCGTCTCCTAGTCGCAGAGG+TGG | - | chr2_1:1790101-1790120 | Msa0187040:intron | 60.0% | |
| TTCCTGCCACCTCTGCGACT+AGG | + | chr2_1:1790110-1790129 | None:intergenic | 60.0% | |
| GGCGACGCGAAAACAGACGG+AGG | + | chr2_1:1786493-1786512 | None:intergenic | 65.0% | |
| GACAGCGCCTCCGAATGCCA+CGG | + | chr2_1:1787915-1787934 | None:intergenic | 65.0% | |
| CTCCTAGTCGCAGAGGTGGC+AGG | - | chr2_1:1790105-1790124 | Msa0187040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 1785359 | 1790474 | 1785359 | ID=Msa0187040;Name=Msa0187040 |
| chr2_1 | mRNA | 1785359 | 1790474 | 1785359 | ID=Msa0187040-mRNA-1;Parent=Msa0187040;Name=Msa0187040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=160|1|1|1|1|1|10|293|780 |
| chr2_1 | exon | 1785359 | 1785991 | 1785359 | ID=Msa0187040-mRNA-1:exon:821;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1786076 | 1786229 | 1786076 | ID=Msa0187040-mRNA-1:exon:820;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1786341 | 1786407 | 1786341 | ID=Msa0187040-mRNA-1:exon:819;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1786486 | 1786581 | 1786486 | ID=Msa0187040-mRNA-1:exon:818;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1786665 | 1786845 | 1786665 | ID=Msa0187040-mRNA-1:exon:817;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1787292 | 1787366 | 1787292 | ID=Msa0187040-mRNA-1:exon:816;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1787460 | 1787938 | 1787460 | ID=Msa0187040-mRNA-1:exon:815;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1788459 | 1789173 | 1788459 | ID=Msa0187040-mRNA-1:exon:814;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1789282 | 1789442 | 1789282 | ID=Msa0187040-mRNA-1:exon:813;Parent=Msa0187040-mRNA-1 |
| chr2_1 | exon | 1790240 | 1790474 | 1790240 | ID=Msa0187040-mRNA-1:exon:812;Parent=Msa0187040-mRNA-1 |
| chr2_1 | five_prime_UTR | 1790315 | 1790474 | 1790315 | ID=Msa0187040-mRNA-1:five_prime_utr;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1790240 | 1790314 | 1790240 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1789282 | 1789442 | 1789282 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1788459 | 1789173 | 1788459 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1787460 | 1787938 | 1787460 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1787292 | 1787366 | 1787292 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1786665 | 1786845 | 1786665 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1786486 | 1786581 | 1786486 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1786341 | 1786407 | 1786341 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1786076 | 1786229 | 1786076 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | CDS | 1785652 | 1785991 | 1785652 | ID=Msa0187040-mRNA-1:cds;Parent=Msa0187040-mRNA-1 |
| chr2_1 | three_prime_UTR | 1785359 | 1785651 | 1785359 | ID=Msa0187040-mRNA-1:three_prime_utr;Parent=Msa0187040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
